AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0114540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0114540 MtrunA17_Chr1g0192211 98.222 225 3 1 1 225 205 428 8.64e-156 438
Msa0114540 MtrunA17_Chr7g0272281 64.000 225 75 3 1 225 194 412 4.02e-76 235
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0114540 AT3G05545.1 40.385 208 84 12 1 189 213 399 1.08e-15 75.5

Find 126 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCCAACAACTTTCGTTTA+AGG 0.128049 1_3:+31744383 Msa0114540:CDS
GCTTTGGCGCTTTGGCCTTT+TGG 0.215443 1_3:+31744529 Msa0114540:three_prime_UTR
TGAGGTATGGTACTACTATT+AGG 0.266157 1_3:-31744928 None:intergenic
TACATATTGCTTTGGCGCTT+TGG 0.295553 1_3:+31744521 Msa0114540:three_prime_UTR
CTTATCCCGTCAAGTTCTTC+AGG 0.313291 1_3:+31744211 Msa0114540:CDS
TTTATGCATCCCTTTCTTGT+TGG 0.343718 1_3:+31743665 Msa0114540:CDS
CCGCTAGTCAAAGGCCAGTC+AGG 0.344997 1_3:+31743612 Msa0114540:CDS
GGTATCTTGTTCGGAAAATC+AGG 0.345039 1_3:+31744684 Msa0114540:three_prime_UTR
AGCCAAGGTGATAGAGATTC+AGG 0.356744 1_3:+31744313 Msa0114540:CDS
TGATACAGCTCCGCCTGAAT+TGG 0.357890 1_3:-31743420 None:intergenic
GCCCGCATTGTGGTTGAGTT+AGG 0.363848 1_3:-31744088 None:intergenic
CCATTCCAATGGTTGAAGTT+AGG 0.374138 1_3:-31743449 None:intergenic
TACCGAGTCGCTTTCATGCT+TGG 0.381590 1_3:+31744260 Msa0114540:CDS
AGAAATGTTACATATTGCTT+TGG 0.391120 1_3:+31744513 Msa0114540:three_prime_UTR
CTGAAGAACTTGACGGGATA+AGG 0.393601 1_3:-31744210 None:intergenic
ACCGAGTCGCTTTCATGCTT+GGG 0.399672 1_3:+31744261 Msa0114540:CDS
ATGCCTTAAACGAAAGTTGT+TGG 0.400097 1_3:-31744386 None:intergenic
TGCCAGAGCGGGTAGCTCAA+TGG 0.400451 1_3:+31743973 Msa0114540:CDS
TTATATAATCTGGCTGGCCT+TGG 0.403366 1_3:+31744576 Msa0114540:three_prime_UTR
ACCGTGACTGCTGGCTCGTC+GGG 0.419567 1_3:-31744128 None:intergenic
AAATAAGATGGTATCTTGTT+CGG 0.419994 1_3:+31744675 Msa0114540:three_prime_UTR
CGAGCATTGCTGCCAGGATA+AGG 0.421117 1_3:-31744013 None:intergenic
AAGTTGTTGGATCTGGTACT+TGG 0.422418 1_3:-31744373 None:intergenic
GCCAGAGCGGGTAGCTCAAT+GGG 0.423509 1_3:+31743974 Msa0114540:CDS
TAAACGAAAGTTGTTGGATC+TGG 0.424569 1_3:-31744380 None:intergenic
GGTACATACATTATATAATC+TGG 0.424685 1_3:+31744566 Msa0114540:three_prime_UTR
GCCCATTGAGCTACCCGCTC+TGG 0.428870 1_3:-31743975 None:intergenic
GGTCTGACCGGTTCGCGGAT+TGG 0.435931 1_3:-31744351 None:intergenic
CATGAAAGCGACTCGGTAGA+TGG 0.436397 1_3:-31744255 None:intergenic
TGCAGTTCTGCTGCCAGAGC+GGG 0.437404 1_3:+31743962 Msa0114540:intron
CGTCGGGCAACAGAAGAAAC+GGG 0.438022 1_3:-31744112 None:intergenic
ATCCCTTTCTTGTTGGCCAC+AGG 0.440114 1_3:+31743672 Msa0114540:CDS
CTCAAAATAATTATAGTTCA+AGG 0.440359 1_3:+31744947 Msa0114540:three_prime_UTR
ATCTGGTACTTGGGTCTGAC+CGG 0.441514 1_3:-31744363 None:intergenic
CACCGTGACTGCTGGCTCGT+CGG 0.445484 1_3:-31744129 None:intergenic
TGCATAAAAGATCCTGATCT+TGG 0.455989 1_3:-31743650 None:intergenic
TCACTGGCCAACGCCTTAAG+AGG 0.457326 1_3:-31744863 None:intergenic
TGATAGAGTCCAAGCACTTC+AGG 0.468635 1_3:+31744042 Msa0114540:CDS
GAAAATAATGGTTTATCAAG+TGG 0.472223 1_3:+31744978 Msa0114540:three_prime_UTR
GTACCTGTGGCCAACAAGAA+AGG 0.477874 1_3:-31743675 None:intergenic
TACAGCTCCGCCTGAATTGG+AGG 0.479399 1_3:-31743417 None:intergenic
TCAATGATCCCTCCTTATCC+TGG 0.480471 1_3:+31744001 Msa0114540:CDS
ACATCTGAACCACCCCTGAC+TGG 0.484638 1_3:-31743626 None:intergenic
GCAAGAACTGAGCGAGGGTA+TGG 0.485106 1_3:+31744901 Msa0114540:three_prime_UTR
TGGATCTTCATTATCACAGT+TGG 0.490022 1_3:+31743519 Msa0114540:CDS
TGATCTGGTGATGTGGCCAC+TGG 0.492315 1_3:-31744172 None:intergenic
AGTTGAACCACCGTGACTGC+TGG 0.492769 1_3:-31744137 None:intergenic
GGTTCAGATGTACCAAGATC+AGG 0.493227 1_3:+31743638 Msa0114540:CDS
CGGTTCGCGGATTGGTGGTA+CGG 0.495953 1_3:-31744343 None:intergenic
CGCTAGTCAAAGGCCAGTCA+GGG 0.497658 1_3:+31743613 Msa0114540:CDS
AACAACTTTCGTTTAAGGCA+TGG 0.500049 1_3:+31744388 Msa0114540:CDS
GGATCTTCATTATCACAGTT+GGG 0.502373 1_3:+31743520 Msa0114540:CDS
TCGTCGGGCAACAGAAGAAA+CGG 0.505670 1_3:-31744113 None:intergenic
CGACTGCTTGCAGTAGAGAA+AGG 0.511891 1_3:-31743557 None:intergenic
CGTACCACCAATCCGCGAAC+CGG 0.515657 1_3:+31744344 Msa0114540:CDS
CACAACAGTTTACAAATCAC+TGG 0.517440 1_3:-31744879 None:intergenic
GCAGGAAATGTGTAGGAAGC+TGG 0.521105 1_3:-31743494 None:intergenic
CGGGCACGAGCATTGCTGCC+AGG 0.522313 1_3:-31744019 None:intergenic
GCCCGACGAGCCAGCAGTCA+CGG 0.526696 1_3:+31744127 Msa0114540:CDS
CTTCACAGTGAACAAAACAT+AGG 0.527573 1_3:-31744446 None:intergenic
GCAGCCATGTGGCTGTGTGA+TGG 0.531765 1_3:+31744613 Msa0114540:three_prime_UTR
ACTTGGGTCTGACCGGTTCG+CGG 0.531816 1_3:-31744356 None:intergenic
TCCTAACTCAACCACAATGC+GGG 0.531962 1_3:+31744087 Msa0114540:CDS
CGGTGTCACCCGCTAGTCAA+AGG 0.532231 1_3:+31743603 Msa0114540:CDS
AAGAAACCACCACTTTGATC+TGG 0.532283 1_3:-31744187 None:intergenic
TACCTGTGGCCAACAAGAAA+GGG 0.532318 1_3:-31743674 None:intergenic
TGAATGTGATGAATTGTGGT+TGG 0.532800 1_3:+31744761 Msa0114540:three_prime_UTR
TCACACAGCCACATGGCTGC+AGG 0.534190 1_3:-31744610 None:intergenic
AAATTGAATGTGATGAATTG+TGG 0.534397 1_3:+31744757 Msa0114540:three_prime_UTR
CTGACTGGCCTTTGACTAGC+GGG 0.536730 1_3:-31743611 None:intergenic
AGTTGTTGGATCTGGTACTT+GGG 0.541944 1_3:-31744372 None:intergenic
GATAGTATGCCTGAAGTGCT+TGG 0.542324 1_3:-31744051 None:intergenic
CCTTCATTGTCGTTGAGCCA+AGG 0.551844 1_3:+31744298 Msa0114540:CDS
CCGCCTGAATTGGAGGAGGA+TGG 0.555004 1_3:-31743410 None:intergenic
AGTTGGTGCTGATCAGCCCT+CGG 0.555676 1_3:+31743583 Msa0114540:CDS
TTCCTACACATTTCCTGCCG+TGG 0.556162 1_3:+31743499 Msa0114540:CDS
GAAGTGCTTGGACTCTATCA+CGG 0.556300 1_3:-31744039 None:intergenic
TGCTTGCAGTAGAGAAAGGA+GGG 0.557357 1_3:-31743553 None:intergenic
AAGCACCTAACTTCAACCAT+TGG 0.558104 1_3:+31743444 Msa0114540:five_prime_UTR
TTACGTCCTGAAGAACTTGA+CGG 0.561945 1_3:-31744217 None:intergenic
TTGGAGGGCGTAAAATAAGA+TGG 0.563570 1_3:+31744663 Msa0114540:three_prime_UTR
ACTGCAAGCAGTCGTCTAGT+TGG 0.566772 1_3:+31743566 Msa0114540:CDS
CCTTGGCTCAACGACAATGA+AGG 0.567787 1_3:-31744298 None:intergenic
TACGTCCTGAAGAACTTGAC+GGG 0.568123 1_3:-31744216 None:intergenic
TAGGAAGCTGGCATTTCACT+AGG 0.568154 1_3:-31743482 None:intergenic
CTTAACATAACAAACCCAAA+AGG 0.569731 1_3:-31744544 None:intergenic
AAGTGCTTGGACTCTATCAC+GGG 0.574743 1_3:-31744038 None:intergenic
GTGTATTACCGATGTTGTGA+AGG 0.583061 1_3:-31744424 None:intergenic
TCAACGACAATGAAGGTAAG+TGG 0.591021 1_3:-31744291 None:intergenic
TGATAATGAAGATCCACGGC+AGG 0.591704 1_3:-31743512 None:intergenic
CCTGACTGGCCTTTGACTAG+CGG 0.594423 1_3:-31743612 None:intergenic
CATACATTATATAATCTGGC+TGG 0.595424 1_3:+31744570 Msa0114540:three_prime_UTR
TGACTAGCGGGTGACACCGA+GGG 0.598180 1_3:-31743599 None:intergenic
GCATTGCTGCCAGGATAAGG+AGG 0.599766 1_3:-31744010 None:intergenic
AAGGTGATAGAGATTCAGGC+TGG 0.604869 1_3:+31744317 Msa0114540:CDS
AGCCTGAATCTCTATCACCT+TGG 0.605048 1_3:-31744315 None:intergenic
CCTAACTTCAACCATTGGAA+TGG 0.606132 1_3:+31743449 Msa0114540:five_prime_UTR
CTGCAGTTCTGCTGCCAGAG+CGG 0.607367 1_3:+31743961 Msa0114540:intron
AGCTCCGCCTGAATTGGAGG+AGG 0.614129 1_3:-31743414 None:intergenic
TCTGGTGATGTGGCCACTGG+TGG 0.614236 1_3:-31744169 None:intergenic
CTGCTTGCAGTAGAGAAAGG+AGG 0.623199 1_3:-31743554 None:intergenic
TCCCAAGCATGAAAGCGACT+CGG 0.629927 1_3:-31744262 None:intergenic
CTGACCGGTTCGCGGATTGG+TGG 0.629946 1_3:-31744348 None:intergenic
ACCACTTTGATCTGGTGATG+TGG 0.633241 1_3:-31744179 None:intergenic
TTGACTAGCGGGTGACACCG+AGG 0.636852 1_3:-31743600 None:intergenic
AACTCAACTAACACCACCAG+TGG 0.638606 1_3:+31744156 Msa0114540:CDS
ATCCACGGCAGGAAATGTGT+AGG 0.639525 1_3:-31743501 None:intergenic
GAAGCAAACTCTCATTACCA+TGG 0.642368 1_3:+31744465 Msa0114540:three_prime_UTR
GCACAGATGAGCCATTCCAA+TGG 0.642442 1_3:-31743460 None:intergenic
ATGTCCATCACACAGCCACA+TGG 0.651755 1_3:-31744617 None:intergenic
TGTTGTGCAAGAACTGAGCG+AGG 0.654128 1_3:+31744895 Msa0114540:three_prime_UTR
AGTCAAAGGCCAGTCAGGGG+TGG 0.657830 1_3:+31743617 Msa0114540:CDS
CATTGCTGCCAGGATAAGGA+GGG 0.659582 1_3:-31744009 None:intergenic
CCATCCTCCTCCAATTCAGG+CGG 0.664837 1_3:+31743410 Msa0114540:five_prime_UTR
ATAGAATGCCTTCACAACAT+CGG 0.671385 1_3:+31744416 Msa0114540:CDS
ACTGTGATAATGAAGATCCA+CGG 0.675847 1_3:-31743516 None:intergenic
ATCCTAACTCAACCACAATG+CGG 0.678429 1_3:+31744086 Msa0114540:CDS
GTCGGGCAACAGAAGAAACG+GGG 0.684072 1_3:-31744111 None:intergenic
GCTAGTCAAAGGCCAGTCAG+GGG 0.689303 1_3:+31743614 Msa0114540:CDS
ACATCACCAGATCAAAGTGG+TGG 0.698511 1_3:+31744181 Msa0114540:CDS
GCCACATCACCAGATCAAAG+TGG 0.713425 1_3:+31744178 Msa0114540:CDS
GCTTGCAGTAGAGAAAGGAG+GGG 0.719459 1_3:-31743552 None:intergenic
GTTGTGCAAGAACTGAGCGA+GGG 0.721324 1_3:+31744896 Msa0114540:three_prime_UTR
TCGGGCAACAGAAGAAACGG+GGG 0.727112 1_3:-31744110 None:intergenic
CGACGAGCCAGCAGTCACGG+TGG 0.744778 1_3:+31744130 Msa0114540:CDS
GTTGAGTTAGGATGTTGCTG+CGG 0.749322 1_3:-31744076 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATTATTTATTTAATTT+AGG - chr1_3:31743719-31743738 None:intergenic 0.0%
!!! AAAAATTATTTATTTAATTT+AGG - chr1_3:31743719-31743738 None:intergenic 0.0%
!! AACTAATAGATAAGAAATAA+TGG + chr1_3:31743849-31743868 Msa0114540:intron 15.0%
!! AACTAATAGATAAGAAATAA+TGG + chr1_3:31743849-31743868 Msa0114540:intron 15.0%
!! CATTGAGATATGATAAATTA+CGG - chr1_3:31743783-31743802 None:intergenic 20.0%
!!! ACTATAATTATTTTGAGGTA+TGG - chr1_3:31744944-31744963 None:intergenic 20.0%
!!! CTTGAACTATAATTATTTTG+AGG - chr1_3:31744949-31744968 None:intergenic 20.0%
!! CTCAAAATAATTATAGTTCA+AGG + chr1_3:31744947-31744966 Msa0114540:three_prime_UTR 20.0%
!!! AAGGATGATTTTGAAAATAA+TGG + chr1_3:31744966-31744985 Msa0114540:three_prime_UTR 20.0%
!! CATTGAGATATGATAAATTA+CGG - chr1_3:31743783-31743802 None:intergenic 20.0%
!!! ACTATAATTATTTTGAGGTA+TGG - chr1_3:31744944-31744963 None:intergenic 20.0%
!!! CTTGAACTATAATTATTTTG+AGG - chr1_3:31744949-31744968 None:intergenic 20.0%
!! CTCAAAATAATTATAGTTCA+AGG + chr1_3:31744947-31744966 Msa0114540:three_prime_UTR 20.0%
!!! AAGGATGATTTTGAAAATAA+TGG + chr1_3:31744966-31744985 Msa0114540:three_prime_UTR 20.0%
! AGATATGATAAATTACGGTT+TGG - chr1_3:31743778-31743797 None:intergenic 25.0%
!!! GTTAAGTATGCAATTAGTTT+TGG + chr1_3:31743817-31743836 Msa0114540:intron 25.0%
!! TAATGGATCTCATATCTAAT+TGG + chr1_3:31743866-31743885 Msa0114540:intron 25.0%
!!! AAATAAGTTCTGATTTTCCA+TGG - chr1_3:31744485-31744504 None:intergenic 25.0%
! AGAAATGTTACATATTGCTT+TGG + chr1_3:31744513-31744532 Msa0114540:three_prime_UTR 25.0%
! GGTACATACATTATATAATC+TGG + chr1_3:31744566-31744585 Msa0114540:three_prime_UTR 25.0%
! AAATAAGATGGTATCTTGTT+CGG + chr1_3:31744675-31744694 Msa0114540:three_prime_UTR 25.0%
! AAATTGAATGTGATGAATTG+TGG + chr1_3:31744757-31744776 Msa0114540:three_prime_UTR 25.0%
! GAAAATAATGGTTTATCAAG+TGG + chr1_3:31744978-31744997 Msa0114540:three_prime_UTR 25.0%
! AGATATGATAAATTACGGTT+TGG - chr1_3:31743778-31743797 None:intergenic 25.0%
!!! GTTAAGTATGCAATTAGTTT+TGG + chr1_3:31743817-31743836 Msa0114540:intron 25.0%
!! TAATGGATCTCATATCTAAT+TGG + chr1_3:31743866-31743885 Msa0114540:intron 25.0%
!!! AAATAAGTTCTGATTTTCCA+TGG - chr1_3:31744485-31744504 None:intergenic 25.0%
! AGAAATGTTACATATTGCTT+TGG + chr1_3:31744513-31744532 Msa0114540:three_prime_UTR 25.0%
! GGTACATACATTATATAATC+TGG + chr1_3:31744566-31744585 Msa0114540:three_prime_UTR 25.0%
! AAATAAGATGGTATCTTGTT+CGG + chr1_3:31744675-31744694 Msa0114540:three_prime_UTR 25.0%
! AAATTGAATGTGATGAATTG+TGG + chr1_3:31744757-31744776 Msa0114540:three_prime_UTR 25.0%
! GAAAATAATGGTTTATCAAG+TGG + chr1_3:31744978-31744997 Msa0114540:three_prime_UTR 25.0%
TATCTCAATGTTCGATCTTA+TGG + chr1_3:31743793-31743812 Msa0114540:intron 30.0%
CTTAACATAACAAACCCAAA+AGG - chr1_3:31744547-31744566 None:intergenic 30.0%
!!! CTTTTGGGTTTGTTATGTTA+AGG + chr1_3:31744545-31744564 Msa0114540:three_prime_UTR 30.0%
CATACATTATATAATCTGGC+TGG + chr1_3:31744570-31744589 Msa0114540:three_prime_UTR 30.0%
! TTCGACTATTTTATGTGTCT+TGG + chr1_3:31744644-31744663 Msa0114540:three_prime_UTR 30.0%
! ACTATTTTATGTGTCTTGGA+GGG + chr1_3:31744648-31744667 Msa0114540:three_prime_UTR 30.0%
! TCGAGTAATTTTACCTCTTA+AGG + chr1_3:31744850-31744869 Msa0114540:three_prime_UTR 30.0%
TATCTCAATGTTCGATCTTA+TGG + chr1_3:31743793-31743812 Msa0114540:intron 30.0%
CTTAACATAACAAACCCAAA+AGG - chr1_3:31744547-31744566 None:intergenic 30.0%
!!! CTTTTGGGTTTGTTATGTTA+AGG + chr1_3:31744545-31744564 Msa0114540:three_prime_UTR 30.0%
CATACATTATATAATCTGGC+TGG + chr1_3:31744570-31744589 Msa0114540:three_prime_UTR 30.0%
! TTCGACTATTTTATGTGTCT+TGG + chr1_3:31744644-31744663 Msa0114540:three_prime_UTR 30.0%
! ACTATTTTATGTGTCTTGGA+GGG + chr1_3:31744648-31744667 Msa0114540:three_prime_UTR 30.0%
! TCGAGTAATTTTACCTCTTA+AGG + chr1_3:31744850-31744869 Msa0114540:three_prime_UTR 30.0%
! ACTGTGATAATGAAGATCCA+CGG - chr1_3:31743519-31743538 None:intergenic 35.0%
TGGATCTTCATTATCACAGT+TGG + chr1_3:31743519-31743538 Msa0114540:CDS 35.0%
GGATCTTCATTATCACAGTT+GGG + chr1_3:31743520-31743539 Msa0114540:CDS 35.0%
TGCATAAAAGATCCTGATCT+TGG - chr1_3:31743653-31743672 None:intergenic 35.0%
TTTATGCATCCCTTTCTTGT+TGG + chr1_3:31743665-31743684 Msa0114540:CDS 35.0%
!! CACAGGTACATCTTTAGAAT+CGG + chr1_3:31743689-31743708 Msa0114540:intron 35.0%
TAAACGAAAGTTGTTGGATC+TGG - chr1_3:31744383-31744402 None:intergenic 35.0%
GATCCAACAACTTTCGTTTA+AGG + chr1_3:31744383-31744402 Msa0114540:CDS 35.0%
ATGCCTTAAACGAAAGTTGT+TGG - chr1_3:31744389-31744408 None:intergenic 35.0%
! AACAACTTTCGTTTAAGGCA+TGG + chr1_3:31744388-31744407 Msa0114540:CDS 35.0%
ATAGAATGCCTTCACAACAT+CGG + chr1_3:31744416-31744435 Msa0114540:CDS 35.0%
CTTCACAGTGAACAAAACAT+AGG - chr1_3:31744449-31744468 None:intergenic 35.0%
! GACTATTTTATGTGTCTTGG+AGG + chr1_3:31744647-31744666 Msa0114540:three_prime_UTR 35.0%
! TGTTCGGAAAATCAGGTTTT+TGG + chr1_3:31744691-31744710 Msa0114540:three_prime_UTR 35.0%
TGAATGTGATGAATTGTGGT+TGG + chr1_3:31744761-31744780 Msa0114540:three_prime_UTR 35.0%
! AATTTTACCTCTTAAGGCGT+TGG + chr1_3:31744856-31744875 Msa0114540:three_prime_UTR 35.0%
CACAACAGTTTACAAATCAC+TGG - chr1_3:31744882-31744901 None:intergenic 35.0%
TGAGGTATGGTACTACTATT+AGG - chr1_3:31744931-31744950 None:intergenic 35.0%
! ACTGTGATAATGAAGATCCA+CGG - chr1_3:31743519-31743538 None:intergenic 35.0%
TGGATCTTCATTATCACAGT+TGG + chr1_3:31743519-31743538 Msa0114540:CDS 35.0%
GGATCTTCATTATCACAGTT+GGG + chr1_3:31743520-31743539 Msa0114540:CDS 35.0%
TGCATAAAAGATCCTGATCT+TGG - chr1_3:31743653-31743672 None:intergenic 35.0%
TTTATGCATCCCTTTCTTGT+TGG + chr1_3:31743665-31743684 Msa0114540:CDS 35.0%
!! CACAGGTACATCTTTAGAAT+CGG + chr1_3:31743689-31743708 Msa0114540:intron 35.0%
TAAACGAAAGTTGTTGGATC+TGG - chr1_3:31744383-31744402 None:intergenic 35.0%
GATCCAACAACTTTCGTTTA+AGG + chr1_3:31744383-31744402 Msa0114540:CDS 35.0%
ATGCCTTAAACGAAAGTTGT+TGG - chr1_3:31744389-31744408 None:intergenic 35.0%
! AACAACTTTCGTTTAAGGCA+TGG + chr1_3:31744388-31744407 Msa0114540:CDS 35.0%
ATAGAATGCCTTCACAACAT+CGG + chr1_3:31744416-31744435 Msa0114540:CDS 35.0%
CTTCACAGTGAACAAAACAT+AGG - chr1_3:31744449-31744468 None:intergenic 35.0%
! GACTATTTTATGTGTCTTGG+AGG + chr1_3:31744647-31744666 Msa0114540:three_prime_UTR 35.0%
! TGTTCGGAAAATCAGGTTTT+TGG + chr1_3:31744691-31744710 Msa0114540:three_prime_UTR 35.0%
TGAATGTGATGAATTGTGGT+TGG + chr1_3:31744761-31744780 Msa0114540:three_prime_UTR 35.0%
! AATTTTACCTCTTAAGGCGT+TGG + chr1_3:31744856-31744875 Msa0114540:three_prime_UTR 35.0%
CACAACAGTTTACAAATCAC+TGG - chr1_3:31744882-31744901 None:intergenic 35.0%
TGAGGTATGGTACTACTATT+AGG - chr1_3:31744931-31744950 None:intergenic 35.0%
AAGCACCTAACTTCAACCAT+TGG + chr1_3:31743444-31743463 Msa0114540:five_prime_UTR 40.0%
CCATTCCAATGGTTGAAGTT+AGG - chr1_3:31743452-31743471 None:intergenic 40.0%
CCTAACTTCAACCATTGGAA+TGG + chr1_3:31743449-31743468 Msa0114540:five_prime_UTR 40.0%
! CGATTCTAAAGATGTACCTG+TGG - chr1_3:31743691-31743710 None:intergenic 40.0%
! GCTAGTAGAAATTTGCTCGT+TGG + chr1_3:31743888-31743907 Msa0114540:intron 40.0%
ATCCTAACTCAACCACAATG+CGG + chr1_3:31744086-31744105 Msa0114540:CDS 40.0%
AAGAAACCACCACTTTGATC+TGG - chr1_3:31744190-31744209 None:intergenic 40.0%
TTACGTCCTGAAGAACTTGA+CGG - chr1_3:31744220-31744239 None:intergenic 40.0%
! TCGGTAGATGGTTTTCTTCT+TGG - chr1_3:31744246-31744265 None:intergenic 40.0%
TCAACGACAATGAAGGTAAG+TGG - chr1_3:31744294-31744313 None:intergenic 40.0%
AGTTGTTGGATCTGGTACTT+GGG - chr1_3:31744375-31744394 None:intergenic 40.0%
AAGTTGTTGGATCTGGTACT+TGG - chr1_3:31744376-31744395 None:intergenic 40.0%
GTGTATTACCGATGTTGTGA+AGG - chr1_3:31744427-31744446 None:intergenic 40.0%
GAAGCAAACTCTCATTACCA+TGG + chr1_3:31744465-31744484 Msa0114540:three_prime_UTR 40.0%
TACATATTGCTTTGGCGCTT+TGG + chr1_3:31744521-31744540 Msa0114540:three_prime_UTR 40.0%
!! TTATATAATCTGGCTGGCCT+TGG + chr1_3:31744576-31744595 Msa0114540:three_prime_UTR 40.0%
TGCAGGAAAAATCAGTTCCA+AGG - chr1_3:31744596-31744615 None:intergenic 40.0%
! TTGGAGGGCGTAAAATAAGA+TGG + chr1_3:31744663-31744682 Msa0114540:three_prime_UTR 40.0%
GGTATCTTGTTCGGAAAATC+AGG + chr1_3:31744684-31744703 Msa0114540:three_prime_UTR 40.0%
!! CAGGTTTTTGGAAGAAATGC+TGG + chr1_3:31744703-31744722 Msa0114540:three_prime_UTR 40.0%
AAGCACCTAACTTCAACCAT+TGG + chr1_3:31743444-31743463 Msa0114540:five_prime_UTR 40.0%
CCATTCCAATGGTTGAAGTT+AGG - chr1_3:31743452-31743471 None:intergenic 40.0%
CCTAACTTCAACCATTGGAA+TGG + chr1_3:31743449-31743468 Msa0114540:five_prime_UTR 40.0%
! CGATTCTAAAGATGTACCTG+TGG - chr1_3:31743691-31743710 None:intergenic 40.0%
! GCTAGTAGAAATTTGCTCGT+TGG + chr1_3:31743888-31743907 Msa0114540:intron 40.0%
ATCCTAACTCAACCACAATG+CGG + chr1_3:31744086-31744105 Msa0114540:CDS 40.0%
AAGAAACCACCACTTTGATC+TGG - chr1_3:31744190-31744209 None:intergenic 40.0%
TTACGTCCTGAAGAACTTGA+CGG - chr1_3:31744220-31744239 None:intergenic 40.0%
! TCGGTAGATGGTTTTCTTCT+TGG - chr1_3:31744246-31744265 None:intergenic 40.0%
TCAACGACAATGAAGGTAAG+TGG - chr1_3:31744294-31744313 None:intergenic 40.0%
AGTTGTTGGATCTGGTACTT+GGG - chr1_3:31744375-31744394 None:intergenic 40.0%
AAGTTGTTGGATCTGGTACT+TGG - chr1_3:31744376-31744395 None:intergenic 40.0%
GTGTATTACCGATGTTGTGA+AGG - chr1_3:31744427-31744446 None:intergenic 40.0%
GAAGCAAACTCTCATTACCA+TGG + chr1_3:31744465-31744484 Msa0114540:three_prime_UTR 40.0%
TACATATTGCTTTGGCGCTT+TGG + chr1_3:31744521-31744540 Msa0114540:three_prime_UTR 40.0%
!! TTATATAATCTGGCTGGCCT+TGG + chr1_3:31744576-31744595 Msa0114540:three_prime_UTR 40.0%
TGCAGGAAAAATCAGTTCCA+AGG - chr1_3:31744596-31744615 None:intergenic 40.0%
! TTGGAGGGCGTAAAATAAGA+TGG + chr1_3:31744663-31744682 Msa0114540:three_prime_UTR 40.0%
GGTATCTTGTTCGGAAAATC+AGG + chr1_3:31744684-31744703 Msa0114540:three_prime_UTR 40.0%
!! CAGGTTTTTGGAAGAAATGC+TGG + chr1_3:31744703-31744722 Msa0114540:three_prime_UTR 40.0%
TAGGAAGCTGGCATTTCACT+AGG - chr1_3:31743485-31743504 None:intergenic 45.0%
! TGATAATGAAGATCCACGGC+AGG - chr1_3:31743515-31743534 None:intergenic 45.0%
TGCTTGCAGTAGAGAAAGGA+GGG - chr1_3:31743556-31743575 None:intergenic 45.0%
GGTTCAGATGTACCAAGATC+AGG + chr1_3:31743638-31743657 Msa0114540:CDS 45.0%
TACCTGTGGCCAACAAGAAA+GGG - chr1_3:31743677-31743696 None:intergenic 45.0%
TCAATGATCCCTCCTTATCC+TGG + chr1_3:31744001-31744020 Msa0114540:CDS 45.0%
AAGTGCTTGGACTCTATCAC+GGG - chr1_3:31744041-31744060 None:intergenic 45.0%
! GAAGTGCTTGGACTCTATCA+CGG - chr1_3:31744042-31744061 None:intergenic 45.0%
TGATAGAGTCCAAGCACTTC+AGG + chr1_3:31744042-31744061 Msa0114540:CDS 45.0%
! GATAGTATGCCTGAAGTGCT+TGG - chr1_3:31744054-31744073 None:intergenic 45.0%
GTTGAGTTAGGATGTTGCTG+CGG - chr1_3:31744079-31744098 None:intergenic 45.0%
TCCTAACTCAACCACAATGC+GGG + chr1_3:31744087-31744106 Msa0114540:CDS 45.0%
AACTCAACTAACACCACCAG+TGG + chr1_3:31744156-31744175 Msa0114540:CDS 45.0%
! ACCACTTTGATCTGGTGATG+TGG - chr1_3:31744182-31744201 None:intergenic 45.0%
ACATCACCAGATCAAAGTGG+TGG + chr1_3:31744181-31744200 Msa0114540:CDS 45.0%
CTGAAGAACTTGACGGGATA+AGG - chr1_3:31744213-31744232 None:intergenic 45.0%
CTTATCCCGTCAAGTTCTTC+AGG + chr1_3:31744211-31744230 Msa0114540:CDS 45.0%
TACGTCCTGAAGAACTTGAC+GGG - chr1_3:31744219-31744238 None:intergenic 45.0%
AGCCAAGGTGATAGAGATTC+AGG + chr1_3:31744313-31744332 Msa0114540:CDS 45.0%
AGCCTGAATCTCTATCACCT+TGG - chr1_3:31744318-31744337 None:intergenic 45.0%
AAGGTGATAGAGATTCAGGC+TGG + chr1_3:31744317-31744336 Msa0114540:CDS 45.0%
! TGATTTTTCCTGCAGCCATG+TGG + chr1_3:31744602-31744621 Msa0114540:three_prime_UTR 45.0%
TAGGAAGCTGGCATTTCACT+AGG - chr1_3:31743485-31743504 None:intergenic 45.0%
! TGATAATGAAGATCCACGGC+AGG - chr1_3:31743515-31743534 None:intergenic 45.0%
TGCTTGCAGTAGAGAAAGGA+GGG - chr1_3:31743556-31743575 None:intergenic 45.0%
GGTTCAGATGTACCAAGATC+AGG + chr1_3:31743638-31743657 Msa0114540:CDS 45.0%
TACCTGTGGCCAACAAGAAA+GGG - chr1_3:31743677-31743696 None:intergenic 45.0%
TCAATGATCCCTCCTTATCC+TGG + chr1_3:31744001-31744020 Msa0114540:CDS 45.0%
AAGTGCTTGGACTCTATCAC+GGG - chr1_3:31744041-31744060 None:intergenic 45.0%
! GAAGTGCTTGGACTCTATCA+CGG - chr1_3:31744042-31744061 None:intergenic 45.0%
TGATAGAGTCCAAGCACTTC+AGG + chr1_3:31744042-31744061 Msa0114540:CDS 45.0%
! GATAGTATGCCTGAAGTGCT+TGG - chr1_3:31744054-31744073 None:intergenic 45.0%
GTTGAGTTAGGATGTTGCTG+CGG - chr1_3:31744079-31744098 None:intergenic 45.0%
TCCTAACTCAACCACAATGC+GGG + chr1_3:31744087-31744106 Msa0114540:CDS 45.0%
AACTCAACTAACACCACCAG+TGG + chr1_3:31744156-31744175 Msa0114540:CDS 45.0%
! ACCACTTTGATCTGGTGATG+TGG - chr1_3:31744182-31744201 None:intergenic 45.0%
ACATCACCAGATCAAAGTGG+TGG + chr1_3:31744181-31744200 Msa0114540:CDS 45.0%
CTGAAGAACTTGACGGGATA+AGG - chr1_3:31744213-31744232 None:intergenic 45.0%
CTTATCCCGTCAAGTTCTTC+AGG + chr1_3:31744211-31744230 Msa0114540:CDS 45.0%
TACGTCCTGAAGAACTTGAC+GGG - chr1_3:31744219-31744238 None:intergenic 45.0%
AGCCAAGGTGATAGAGATTC+AGG + chr1_3:31744313-31744332 Msa0114540:CDS 45.0%
AGCCTGAATCTCTATCACCT+TGG - chr1_3:31744318-31744337 None:intergenic 45.0%
AAGGTGATAGAGATTCAGGC+TGG + chr1_3:31744317-31744336 Msa0114540:CDS 45.0%
! TGATTTTTCCTGCAGCCATG+TGG + chr1_3:31744602-31744621 Msa0114540:three_prime_UTR 45.0%
CATCCATCCTCCTCCAATTC+AGG + chr1_3:31743407-31743426 Msa0114540:five_prime_UTR 50.0%
TGATACAGCTCCGCCTGAAT+TGG - chr1_3:31743423-31743442 None:intergenic 50.0%
GCACAGATGAGCCATTCCAA+TGG - chr1_3:31743463-31743482 None:intergenic 50.0%
GCAGGAAATGTGTAGGAAGC+TGG - chr1_3:31743497-31743516 None:intergenic 50.0%
TTCCTACACATTTCCTGCCG+TGG + chr1_3:31743499-31743518 Msa0114540:CDS 50.0%
ATCCACGGCAGGAAATGTGT+AGG - chr1_3:31743504-31743523 None:intergenic 50.0%
GCTTGCAGTAGAGAAAGGAG+GGG - chr1_3:31743555-31743574 None:intergenic 50.0%
CTGCTTGCAGTAGAGAAAGG+AGG - chr1_3:31743557-31743576 None:intergenic 50.0%
CGACTGCTTGCAGTAGAGAA+AGG - chr1_3:31743560-31743579 None:intergenic 50.0%
ACTGCAAGCAGTCGTCTAGT+TGG + chr1_3:31743566-31743585 Msa0114540:CDS 50.0%
ATCCCTTTCTTGTTGGCCAC+AGG + chr1_3:31743672-31743691 Msa0114540:CDS 50.0%
GTACCTGTGGCCAACAAGAA+AGG - chr1_3:31743678-31743697 None:intergenic 50.0%
CATTGCTGCCAGGATAAGGA+GGG - chr1_3:31744012-31744031 None:intergenic 50.0%
TCGTCGGGCAACAGAAGAAA+CGG - chr1_3:31744116-31744135 None:intergenic 50.0%
GCCACATCACCAGATCAAAG+TGG + chr1_3:31744178-31744197 Msa0114540:CDS 50.0%
!! CATGAAAGCGACTCGGTAGA+TGG - chr1_3:31744258-31744277 None:intergenic 50.0%
! TACCGAGTCGCTTTCATGCT+TGG + chr1_3:31744260-31744279 Msa0114540:CDS 50.0%
! ACCGAGTCGCTTTCATGCTT+GGG + chr1_3:31744261-31744280 Msa0114540:CDS 50.0%
TCCCAAGCATGAAAGCGACT+CGG - chr1_3:31744265-31744284 None:intergenic 50.0%
CCTTGGCTCAACGACAATGA+AGG - chr1_3:31744301-31744320 None:intergenic 50.0%
CCTTCATTGTCGTTGAGCCA+AGG + chr1_3:31744298-31744317 Msa0114540:CDS 50.0%
ATCTGGTACTTGGGTCTGAC+CGG - chr1_3:31744366-31744385 None:intergenic 50.0%
!! CTTTGGCGCTTTGGCCTTTT+GGG + chr1_3:31744530-31744549 Msa0114540:three_prime_UTR 50.0%
ATGTCCATCACACAGCCACA+TGG - chr1_3:31744620-31744639 None:intergenic 50.0%
TGTTGTGCAAGAACTGAGCG+AGG + chr1_3:31744895-31744914 Msa0114540:three_prime_UTR 50.0%
GTTGTGCAAGAACTGAGCGA+GGG + chr1_3:31744896-31744915 Msa0114540:three_prime_UTR 50.0%
CATCCATCCTCCTCCAATTC+AGG + chr1_3:31743407-31743426 Msa0114540:five_prime_UTR 50.0%
TGATACAGCTCCGCCTGAAT+TGG - chr1_3:31743423-31743442 None:intergenic 50.0%
GCACAGATGAGCCATTCCAA+TGG - chr1_3:31743463-31743482 None:intergenic 50.0%
GCAGGAAATGTGTAGGAAGC+TGG - chr1_3:31743497-31743516 None:intergenic 50.0%
TTCCTACACATTTCCTGCCG+TGG + chr1_3:31743499-31743518 Msa0114540:CDS 50.0%
ATCCACGGCAGGAAATGTGT+AGG - chr1_3:31743504-31743523 None:intergenic 50.0%
GCTTGCAGTAGAGAAAGGAG+GGG - chr1_3:31743555-31743574 None:intergenic 50.0%
CTGCTTGCAGTAGAGAAAGG+AGG - chr1_3:31743557-31743576 None:intergenic 50.0%
CGACTGCTTGCAGTAGAGAA+AGG - chr1_3:31743560-31743579 None:intergenic 50.0%
ACTGCAAGCAGTCGTCTAGT+TGG + chr1_3:31743566-31743585 Msa0114540:CDS 50.0%
ATCCCTTTCTTGTTGGCCAC+AGG + chr1_3:31743672-31743691 Msa0114540:CDS 50.0%
GTACCTGTGGCCAACAAGAA+AGG - chr1_3:31743678-31743697 None:intergenic 50.0%
CATTGCTGCCAGGATAAGGA+GGG - chr1_3:31744012-31744031 None:intergenic 50.0%
TCGTCGGGCAACAGAAGAAA+CGG - chr1_3:31744116-31744135 None:intergenic 50.0%
GCCACATCACCAGATCAAAG+TGG + chr1_3:31744178-31744197 Msa0114540:CDS 50.0%
!! CATGAAAGCGACTCGGTAGA+TGG - chr1_3:31744258-31744277 None:intergenic 50.0%
! TACCGAGTCGCTTTCATGCT+TGG + chr1_3:31744260-31744279 Msa0114540:CDS 50.0%
! ACCGAGTCGCTTTCATGCTT+GGG + chr1_3:31744261-31744280 Msa0114540:CDS 50.0%
TCCCAAGCATGAAAGCGACT+CGG - chr1_3:31744265-31744284 None:intergenic 50.0%
CCTTGGCTCAACGACAATGA+AGG - chr1_3:31744301-31744320 None:intergenic 50.0%
CCTTCATTGTCGTTGAGCCA+AGG + chr1_3:31744298-31744317 Msa0114540:CDS 50.0%
ATCTGGTACTTGGGTCTGAC+CGG - chr1_3:31744366-31744385 None:intergenic 50.0%
!! CTTTGGCGCTTTGGCCTTTT+GGG + chr1_3:31744530-31744549 Msa0114540:three_prime_UTR 50.0%
ATGTCCATCACACAGCCACA+TGG - chr1_3:31744620-31744639 None:intergenic 50.0%
TGTTGTGCAAGAACTGAGCG+AGG + chr1_3:31744895-31744914 Msa0114540:three_prime_UTR 50.0%
GTTGTGCAAGAACTGAGCGA+GGG + chr1_3:31744896-31744915 Msa0114540:three_prime_UTR 50.0%
CCATCCTCCTCCAATTCAGG+CGG + chr1_3:31743410-31743429 Msa0114540:five_prime_UTR 55.0%
TACAGCTCCGCCTGAATTGG+AGG - chr1_3:31743420-31743439 None:intergenic 55.0%
!! AGTTGGTGCTGATCAGCCCT+CGG + chr1_3:31743583-31743602 Msa0114540:CDS 55.0%
!! CTGACTGGCCTTTGACTAGC+GGG - chr1_3:31743614-31743633 None:intergenic 55.0%
!! CCTGACTGGCCTTTGACTAG+CGG - chr1_3:31743615-31743634 None:intergenic 55.0%
CGCTAGTCAAAGGCCAGTCA+GGG + chr1_3:31743613-31743632 Msa0114540:CDS 55.0%
GCTAGTCAAAGGCCAGTCAG+GGG + chr1_3:31743614-31743633 Msa0114540:CDS 55.0%
ACATCTGAACCACCCCTGAC+TGG - chr1_3:31743629-31743648 None:intergenic 55.0%
GCATTGCTGCCAGGATAAGG+AGG - chr1_3:31744013-31744032 None:intergenic 55.0%
! CGAGCATTGCTGCCAGGATA+AGG - chr1_3:31744016-31744035 None:intergenic 55.0%
GCCCGCATTGTGGTTGAGTT+AGG - chr1_3:31744091-31744110 None:intergenic 55.0%
TCGGGCAACAGAAGAAACGG+GGG - chr1_3:31744113-31744132 None:intergenic 55.0%
GTCGGGCAACAGAAGAAACG+GGG - chr1_3:31744114-31744133 None:intergenic 55.0%
CGTCGGGCAACAGAAGAAAC+GGG - chr1_3:31744115-31744134 None:intergenic 55.0%
AGTTGAACCACCGTGACTGC+TGG - chr1_3:31744140-31744159 None:intergenic 55.0%
! TGATCTGGTGATGTGGCCAC+TGG - chr1_3:31744175-31744194 None:intergenic 55.0%
!! GCTTTGGCGCTTTGGCCTTT+TGG + chr1_3:31744529-31744548 Msa0114540:three_prime_UTR 55.0%
TCACTGGCCAACGCCTTAAG+AGG - chr1_3:31744866-31744885 None:intergenic 55.0%
GCAAGAACTGAGCGAGGGTA+TGG + chr1_3:31744901-31744920 Msa0114540:three_prime_UTR 55.0%
CCATCCTCCTCCAATTCAGG+CGG + chr1_3:31743410-31743429 Msa0114540:five_prime_UTR 55.0%
TACAGCTCCGCCTGAATTGG+AGG - chr1_3:31743420-31743439 None:intergenic 55.0%
!! AGTTGGTGCTGATCAGCCCT+CGG + chr1_3:31743583-31743602 Msa0114540:CDS 55.0%
!! CTGACTGGCCTTTGACTAGC+GGG - chr1_3:31743614-31743633 None:intergenic 55.0%
!! CCTGACTGGCCTTTGACTAG+CGG - chr1_3:31743615-31743634 None:intergenic 55.0%
CGCTAGTCAAAGGCCAGTCA+GGG + chr1_3:31743613-31743632 Msa0114540:CDS 55.0%
GCTAGTCAAAGGCCAGTCAG+GGG + chr1_3:31743614-31743633 Msa0114540:CDS 55.0%
ACATCTGAACCACCCCTGAC+TGG - chr1_3:31743629-31743648 None:intergenic 55.0%
GCATTGCTGCCAGGATAAGG+AGG - chr1_3:31744013-31744032 None:intergenic 55.0%
! CGAGCATTGCTGCCAGGATA+AGG - chr1_3:31744016-31744035 None:intergenic 55.0%
GCCCGCATTGTGGTTGAGTT+AGG - chr1_3:31744091-31744110 None:intergenic 55.0%
TCGGGCAACAGAAGAAACGG+GGG - chr1_3:31744113-31744132 None:intergenic 55.0%
GTCGGGCAACAGAAGAAACG+GGG - chr1_3:31744114-31744133 None:intergenic 55.0%
CGTCGGGCAACAGAAGAAAC+GGG - chr1_3:31744115-31744134 None:intergenic 55.0%
AGTTGAACCACCGTGACTGC+TGG - chr1_3:31744140-31744159 None:intergenic 55.0%
! TGATCTGGTGATGTGGCCAC+TGG - chr1_3:31744175-31744194 None:intergenic 55.0%
!! GCTTTGGCGCTTTGGCCTTT+TGG + chr1_3:31744529-31744548 Msa0114540:three_prime_UTR 55.0%
TCACTGGCCAACGCCTTAAG+AGG - chr1_3:31744866-31744885 None:intergenic 55.0%
GCAAGAACTGAGCGAGGGTA+TGG + chr1_3:31744901-31744920 Msa0114540:three_prime_UTR 55.0%
CCGCCTGAATTGGAGGAGGA+TGG - chr1_3:31743413-31743432 None:intergenic 60.0%
AGCTCCGCCTGAATTGGAGG+AGG - chr1_3:31743417-31743436 None:intergenic 60.0%
! TGACTAGCGGGTGACACCGA+GGG - chr1_3:31743602-31743621 None:intergenic 60.0%
! TTGACTAGCGGGTGACACCG+AGG - chr1_3:31743603-31743622 None:intergenic 60.0%
!! CGGTGTCACCCGCTAGTCAA+AGG + chr1_3:31743603-31743622 Msa0114540:CDS 60.0%
CCGCTAGTCAAAGGCCAGTC+AGG + chr1_3:31743612-31743631 Msa0114540:CDS 60.0%
AGTCAAAGGCCAGTCAGGGG+TGG + chr1_3:31743617-31743636 Msa0114540:CDS 60.0%
CTGCAGTTCTGCTGCCAGAG+CGG + chr1_3:31743961-31743980 Msa0114540:intron 60.0%
TGCAGTTCTGCTGCCAGAGC+GGG + chr1_3:31743962-31743981 Msa0114540:intron 60.0%
TGCCAGAGCGGGTAGCTCAA+TGG + chr1_3:31743973-31743992 Msa0114540:CDS 60.0%
GCCAGAGCGGGTAGCTCAAT+GGG + chr1_3:31743974-31743993 Msa0114540:CDS 60.0%
! TCTGGTGATGTGGCCACTGG+TGG - chr1_3:31744172-31744191 None:intergenic 60.0%
!! CGGTTCGCGGATTGGTGGTA+CGG - chr1_3:31744346-31744365 None:intergenic 60.0%
CGTACCACCAATCCGCGAAC+CGG + chr1_3:31744344-31744363 Msa0114540:CDS 60.0%
!! ACTTGGGTCTGACCGGTTCG+CGG - chr1_3:31744359-31744378 None:intergenic 60.0%
TCACACAGCCACATGGCTGC+AGG - chr1_3:31744613-31744632 None:intergenic 60.0%
GCAGCCATGTGGCTGTGTGA+TGG + chr1_3:31744613-31744632 Msa0114540:three_prime_UTR 60.0%
CCGCCTGAATTGGAGGAGGA+TGG - chr1_3:31743413-31743432 None:intergenic 60.0%
AGCTCCGCCTGAATTGGAGG+AGG - chr1_3:31743417-31743436 None:intergenic 60.0%
! TGACTAGCGGGTGACACCGA+GGG - chr1_3:31743602-31743621 None:intergenic 60.0%
! TTGACTAGCGGGTGACACCG+AGG - chr1_3:31743603-31743622 None:intergenic 60.0%
!! CGGTGTCACCCGCTAGTCAA+AGG + chr1_3:31743603-31743622 Msa0114540:CDS 60.0%
CCGCTAGTCAAAGGCCAGTC+AGG + chr1_3:31743612-31743631 Msa0114540:CDS 60.0%
AGTCAAAGGCCAGTCAGGGG+TGG + chr1_3:31743617-31743636 Msa0114540:CDS 60.0%
CTGCAGTTCTGCTGCCAGAG+CGG + chr1_3:31743961-31743980 Msa0114540:intron 60.0%
TGCAGTTCTGCTGCCAGAGC+GGG + chr1_3:31743962-31743981 Msa0114540:intron 60.0%
TGCCAGAGCGGGTAGCTCAA+TGG + chr1_3:31743973-31743992 Msa0114540:CDS 60.0%
GCCAGAGCGGGTAGCTCAAT+GGG + chr1_3:31743974-31743993 Msa0114540:CDS 60.0%
! TCTGGTGATGTGGCCACTGG+TGG - chr1_3:31744172-31744191 None:intergenic 60.0%
!! CGGTTCGCGGATTGGTGGTA+CGG - chr1_3:31744346-31744365 None:intergenic 60.0%
CGTACCACCAATCCGCGAAC+CGG + chr1_3:31744344-31744363 Msa0114540:CDS 60.0%
!! ACTTGGGTCTGACCGGTTCG+CGG - chr1_3:31744359-31744378 None:intergenic 60.0%
TCACACAGCCACATGGCTGC+AGG - chr1_3:31744613-31744632 None:intergenic 60.0%
GCAGCCATGTGGCTGTGTGA+TGG + chr1_3:31744613-31744632 Msa0114540:three_prime_UTR 60.0%
GCCCATTGAGCTACCCGCTC+TGG - chr1_3:31743978-31743997 None:intergenic 65.0%
AGAAACGGGGGCCCGCATTG+TGG - chr1_3:31744101-31744120 None:intergenic 65.0%
!! ACCGTGACTGCTGGCTCGTC+GGG - chr1_3:31744131-31744150 None:intergenic 65.0%
!! CACCGTGACTGCTGGCTCGT+CGG - chr1_3:31744132-31744151 None:intergenic 65.0%
!! CTGACCGGTTCGCGGATTGG+TGG - chr1_3:31744351-31744370 None:intergenic 65.0%
!! GGTCTGACCGGTTCGCGGAT+TGG - chr1_3:31744354-31744373 None:intergenic 65.0%
GCCCATTGAGCTACCCGCTC+TGG - chr1_3:31743978-31743997 None:intergenic 65.0%
AGAAACGGGGGCCCGCATTG+TGG - chr1_3:31744101-31744120 None:intergenic 65.0%
!! ACCGTGACTGCTGGCTCGTC+GGG - chr1_3:31744131-31744150 None:intergenic 65.0%
!! CACCGTGACTGCTGGCTCGT+CGG - chr1_3:31744132-31744151 None:intergenic 65.0%
!! CTGACCGGTTCGCGGATTGG+TGG - chr1_3:31744351-31744370 None:intergenic 65.0%
!! GGTCTGACCGGTTCGCGGAT+TGG - chr1_3:31744354-31744373 None:intergenic 65.0%
! CGGGCACGAGCATTGCTGCC+AGG - chr1_3:31744022-31744041 None:intergenic 70.0%
GCCCGACGAGCCAGCAGTCA+CGG + chr1_3:31744127-31744146 Msa0114540:CDS 70.0%
CGACGAGCCAGCAGTCACGG+TGG + chr1_3:31744130-31744149 Msa0114540:CDS 70.0%
! CGGGCACGAGCATTGCTGCC+AGG - chr1_3:31744022-31744041 None:intergenic 70.0%
GCCCGACGAGCCAGCAGTCA+CGG + chr1_3:31744127-31744146 Msa0114540:CDS 70.0%
CGACGAGCCAGCAGTCACGG+TGG + chr1_3:31744130-31744149 Msa0114540:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 31743405 31745005 31743405 ID=Msa0114540;Name=Msa0114540
chr1_3 mRNA 31743405 31745005 31743405 ID=Msa0114540-mRNA-1;Parent=Msa0114540;Name=Msa0114540-mRNA-1;_AED=0.01;_eAED=0.01;_QI=86|1|1|1|1|1|2|564|225
chr1_3 exon 31743405 31743693 31743405 ID=Msa0114540-mRNA-1:exon:10316;Parent=Msa0114540-mRNA-1
chr1_3 exon 31743967 31745005 31743967 ID=Msa0114540-mRNA-1:exon:10317;Parent=Msa0114540-mRNA-1
chr1_3 five_prime_UTR 31743405 31743490 31743405 ID=Msa0114540-mRNA-1:five_prime_utr;Parent=Msa0114540-mRNA-1
chr1_3 CDS 31743491 31743693 31743491 ID=Msa0114540-mRNA-1:cds;Parent=Msa0114540-mRNA-1
chr1_3 CDS 31743967 31744441 31743967 ID=Msa0114540-mRNA-1:cds;Parent=Msa0114540-mRNA-1
chr1_3 three_prime_UTR 31744442 31745005 31744442 ID=Msa0114540-mRNA-1:three_prime_utr;Parent=Msa0114540-mRNA-1
Gene Sequence

>Msa0114540

ATGCCAGCTTCCTACACATTTCCTGCCGTGGATCTTCATTATCACAGTTGGGAGCATCATACCCCTCCTTTCTCTACTGCAAGCAGTCGTCTAGTTGGTGCTGATCAGCCCTCGGTGTCACCCGCTAGTCAAAGGCCAGTCAGGGGTGGTTCAGATGTACCAAGATCAGGATCTTTTATGCATCCCTTTCTTGTTGGCCACAGTTCTGCTGCCAGAGCGGGTAGCTCAATGGGCTCATCAATGATCCCTCCTTATCCTGGCAGCAATGCTCGTGCCCGTGATAGAGTCCAAGCACTTCAGGCATACTATCAACCGCAGCAACATCCTAACTCAACCACAATGCGGGCCCCCGTTTCTTCTGTTGCCCGACGAGCCAGCAGTCACGGTGGTTCAACTCAACTAACACCACCAGTGGCCACATCACCAGATCAAAGTGGTGGTTTCTTCCTTATCCCGTCAAGTTCTTCAGGACGTAATTTCCAAGAAGAAAACCATCTACCGAGTCGCTTTCATGCTTGGGAAAGAGACCACTTACCTTCATTGTCGTTGAGCCAAGGTGATAGAGATTCAGGCTGGAGACCGTACCACCAATCCGCGAACCGGTCAGACCCAAGTACCAGATCCAACAACTTTCGTTTAAGGCATGGATCAGATAGAATGCCTTCACAACATCGGTAA

Protein sequence

>Msa0114540

MPASYTFPAVDLHYHSWEHHTPPFSTASSRLVGADQPSVSPASQRPVRGGSDVPRSGSFMHPFLVGHSSAARAGSSMGSSMIPPYPGSNARARDRVQALQAYYQPQQHPNSTTMRAPVSSVARRASSHGGSTQLTPPVATSPDQSGGFFLIPSSSSGRNFQEENHLPSRFHAWERDHLPSLSLSQGDRDSGWRPYHQSANRSDPSTRSNNFRLRHGSDRMPSQHR*