Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1242370 | XP_013445262.1 | 82.063 | 446 | 42 | 3 | 1 | 443 | 1 | 411 | 0.0 | 683 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1242370 | sp|D9UC01|RTM2D_ARATH | 37.113 | 97 | 61 | 0 | 24 | 120 | 16 | 112 | 2.58e-16 | 83.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1242370 | A0A072TR16 | 82.063 | 446 | 42 | 3 | 1 | 443 | 1 | 411 | 0.0 | 683 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0071880 | Msa1242370 | 0.807121 | 5.899851e-50 | -8.615850e-47 |
| Msa0726690 | Msa1242370 | 0.804998 | 1.650066e-49 | -8.615850e-47 |
| Msa0783530 | Msa1242370 | 0.816165 | 6.363919e-52 | -8.615850e-47 |
| Msa0783980 | Msa1242370 | 0.839270 | 1.751811e-57 | -8.615850e-47 |
| Msa0829300 | Msa1242370 | 0.800297 | 1.539491e-48 | -8.615850e-47 |
| Msa0174450 | Msa1242370 | 0.804355 | 2.247581e-49 | -8.615850e-47 |
| Msa0186920 | Msa1242370 | 0.805190 | 1.504429e-49 | -8.615850e-47 |
| Msa0191020 | Msa1242370 | 0.806813 | 6.856318e-50 | -8.615850e-47 |
| Msa0233320 | Msa1242370 | 0.805510 | 1.289197e-49 | -8.615850e-47 |
| Msa1242370 | Msa1284120 | 0.893828 | 4.367454e-75 | -8.615850e-47 |
| Msa0415610 | Msa1242370 | 0.803092 | 4.110893e-49 | -8.615850e-47 |
| Msa0460630 | Msa1242370 | 0.813520 | 2.454939e-51 | -8.615850e-47 |
| Msa0462070 | Msa1242370 | 0.810403 | 1.172607e-50 | -8.615850e-47 |
| Msa0465400 | Msa1242370 | 0.811984 | 5.325586e-51 | -8.615850e-47 |
| Msa0298470 | Msa1242370 | 0.801173 | 1.020200e-48 | -8.615850e-47 |
| Msa1113800 | Msa1242370 | 0.818767 | 1.650504e-52 | -8.615850e-47 |
| Msa1160500 | Msa1242370 | 0.821763 | 3.396510e-53 | -8.615850e-47 |
| Msa0528570 | Msa1242370 | 0.802160 | 6.401792e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1242370 | MtrunA17_Chr8g0356011 | 82.063 | 446 | 42 | 3 | 1 | 443 | 1 | 411 | 0.0 | 683 |
| Msa1242370 | MtrunA17_Chr3g0078561 | 36.345 | 476 | 196 | 24 | 1 | 443 | 1 | 402 | 5.20e-46 | 164 |
| Msa1242370 | MtrunA17_Chr5g0440291 | 35.417 | 96 | 61 | 1 | 22 | 117 | 12 | 106 | 3.24e-13 | 69.3 |
| Msa1242370 | MtrunA17_Chr5g0440321 | 32.520 | 123 | 78 | 3 | 15 | 135 | 4 | 123 | 7.59e-13 | 68.6 |
| Msa1242370 | MtrunA17_Chr5g0440311 | 33.333 | 117 | 71 | 2 | 15 | 125 | 4 | 119 | 4.24e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1242370 | AT5G04890.1 | 37.113 | 97 | 61 | 0 | 24 | 120 | 16 | 112 | 4.12e-17 | 83.2 |
| Msa1242370 | AT2G27140.1 | 38.889 | 90 | 54 | 1 | 22 | 111 | 12 | 100 | 1.23e-16 | 79.3 |
| Msa1242370 | AT5G20970.1 | 36.458 | 96 | 60 | 1 | 16 | 111 | 2 | 96 | 1.54e-13 | 70.9 |
Find 68 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTCATGTTTATCTTCC+TGG | 0.169791 | 8_2:+26643134 | Msa1242370:CDS |
| GAGAGTTCCTTGTTCAAATT+TGG | 0.170610 | 8_2:-26643540 | None:intergenic |
| GTCTTGTTTCAAATTCTTCT+TGG | 0.195325 | 8_2:-26643925 | None:intergenic |
| TATTTACTCTAAAGTTATTA+TGG | 0.210860 | 8_2:+26642995 | Msa1242370:exon |
| CATTTAGAGCACCAACTTTC+CGG | 0.225720 | 8_2:+26643036 | Msa1242370:CDS |
| TCCATTCTTCCCTTCTTGAT+TGG | 0.243777 | 8_2:-26644401 | None:intergenic |
| GCATTTGTATAACTACAATT+TGG | 0.268441 | 8_2:+26642955 | None:intergenic |
| GTTCTAGTTATTGCTGCATT+TGG | 0.274465 | 8_2:+26644526 | Msa1242370:CDS |
| CCATTCTTCCCTTCTTGATT+GGG | 0.284831 | 8_2:-26644400 | None:intergenic |
| TCATTGCTAATTGTTTCTTT+AGG | 0.292280 | 8_2:-26643809 | None:intergenic |
| TCAAAATGGTAAAGAGGATT+TGG | 0.306061 | 8_2:+26644063 | Msa1242370:CDS |
| TCACGAAAGTTGAGGGTTAC+AGG | 0.325893 | 8_2:+26643431 | Msa1242370:CDS |
| GTGTCTATGGATGTTGGTTT+TGG | 0.330660 | 8_2:-26643866 | None:intergenic |
| CATTATAGTTCTCCCTTAAG+AGG | 0.334811 | 8_2:-26644572 | None:intergenic |
| CTCCATTTGTTAACTGGAAT+CGG | 0.348473 | 8_2:-26643461 | None:intergenic |
| TCTAAATCTTTATTATTTGA+AGG | 0.357574 | 8_2:-26643635 | None:intergenic |
| AACAAATGAAAAGGCTCAAA+AGG | 0.366924 | 8_2:+26644123 | Msa1242370:CDS |
| TTGGAGCCTATGTGTCATAT+TGG | 0.385338 | 8_2:+26644545 | Msa1242370:CDS |
| TGATTCTTGCTTGACTCATA+AGG | 0.387472 | 8_2:-26644289 | None:intergenic |
| GGTTACCAAAGAAAATTTAG+AGG | 0.391549 | 8_2:+26644183 | Msa1242370:CDS |
| TCAAATGAAGATTGAGTTGC+TGG | 0.398349 | 8_2:+26643403 | Msa1242370:CDS |
| ATAGATGAAAAGCCTCAAAA+TGG | 0.404493 | 8_2:+26644049 | Msa1242370:CDS |
| AATTAGCTGCTACATCTTCT+CGG | 0.408973 | 8_2:+26644431 | Msa1242370:CDS |
| AATTTAGAGGAAAAGATAGT+AGG | 0.419722 | 8_2:+26644196 | Msa1242370:CDS |
| ACATGAAGAAGGTAAGCTTC+AGG | 0.423364 | 8_2:-26643122 | None:intergenic |
| ACTTGTGATGATTGTGAAGT+TGG | 0.436730 | 8_2:-26643584 | None:intergenic |
| GTTTCTTTCATCTCTGATAG+AGG | 0.440166 | 8_2:-26643098 | None:intergenic |
| CAATGACAATAACCCTCAAA+AGG | 0.440997 | 8_2:+26643826 | Msa1242370:CDS |
| TTGGCTCTCTCTATTGATGT+TGG | 0.446110 | 8_2:-26643947 | None:intergenic |
| TTGGTTCTCTCTATGGATGT+TGG | 0.448014 | 8_2:-26644019 | None:intergenic |
| AATAGATGAAAAGCCTCAAA+AGG | 0.448744 | 8_2:+26643901 | Msa1242370:CDS |
| GACCGATTCCAGTTAACAAA+TGG | 0.451924 | 8_2:+26643459 | Msa1242370:CDS |
| GCCTCAAAATGGTCAAGTAT+TGG | 0.452760 | 8_2:+26643988 | Msa1242370:CDS |
| ATAGATGAAAAGCCTCAAAA+TGG | 0.459211 | 8_2:+26643977 | Msa1242370:CDS |
| CCCAATCAAGAAGGGAAGAA+TGG | 0.459931 | 8_2:+26644400 | Msa1242370:CDS |
| TTGGTTCTCTCTGTGGATGT+TGG | 0.461455 | 8_2:-26644094 | None:intergenic |
| CTGAAGATGCTGAGAAAGAA+AGG | 0.464414 | 8_2:+26644227 | Msa1242370:CDS |
| TTCTTCCCTTCTTGATTGGG+AGG | 0.466684 | 8_2:-26644397 | None:intergenic |
| TTGGTTGTGTCTATGGATGT+TGG | 0.475530 | 8_2:-26643872 | None:intergenic |
| TGCTCCAAATGTTCCAGAGA+AGG | 0.484905 | 8_2:+26644351 | Msa1242370:CDS |
| CAAAACACAAACAAATGAAA+AGG | 0.491199 | 8_2:+26644114 | Msa1242370:CDS |
| TCAATGCTTTGAGAAATTTG+AGG | 0.508380 | 8_2:-26643746 | None:intergenic |
| AAATGTTCCAGAGAAGGAAA+AGG | 0.521289 | 8_2:+26644357 | Msa1242370:CDS |
| GAAAGTTGCGACCGGAAAGT+TGG | 0.529825 | 8_2:-26643047 | None:intergenic |
| CAGGAAGATAAACATGAAGA+AGG | 0.535239 | 8_2:-26643133 | None:intergenic |
| AATGACAATAACCCTCAAAA+GGG | 0.540210 | 8_2:+26643827 | Msa1242370:CDS |
| TTTCTGGAACAGGATATGCT+TGG | 0.540621 | 8_2:-26643493 | None:intergenic |
| GAAAGAAAGGAACTCAAAGA+AGG | 0.547668 | 8_2:+26644240 | Msa1242370:CDS |
| ACAAATGAAAAGGCTCAAAA+GGG | 0.550919 | 8_2:+26644124 | Msa1242370:CDS |
| AAAGCCTCAAAATGGTAAAG+AGG | 0.553368 | 8_2:+26644057 | Msa1242370:CDS |
| GGACATGTCACGAAAGTTGA+GGG | 0.556517 | 8_2:+26643424 | Msa1242370:CDS |
| TAAAGATTTAGATGAAGCAA+AGG | 0.558689 | 8_2:+26643646 | Msa1242370:CDS |
| AGAATTCCTCCCAATCAAGA+AGG | 0.561804 | 8_2:+26644391 | Msa1242370:CDS |
| AGACATTTAGCTGAAAATGT+AGG | 0.570668 | 8_2:+26644496 | Msa1242370:CDS |
| GGAAAACCAATATGACACAT+AGG | 0.573601 | 8_2:-26644551 | None:intergenic |
| CTTGAAGCCAAATTTGAACA+AGG | 0.579441 | 8_2:+26643533 | Msa1242370:CDS |
| TGGACATGTCACGAAAGTTG+AGG | 0.582103 | 8_2:+26643423 | Msa1242370:CDS |
| AGAAAGGAACTCAAAGAAGG+AGG | 0.597966 | 8_2:+26644243 | Msa1242370:CDS |
| TGTATAACTACAATTTGGTG+AGG | 0.602841 | 8_2:+26642960 | Msa1242370:five_prime_UTR |
| ATAGATGAAAAGCCTCAAAA+GGG | 0.605816 | 8_2:+26643902 | Msa1242370:CDS |
| GACGAACTGAAAGTTGCGAC+CGG | 0.608677 | 8_2:-26643055 | None:intergenic |
| GTTTCTTTAGGAATTTGAGA+TGG | 0.609368 | 8_2:-26643797 | None:intergenic |
| GAATTCCTCCCAATCAAGAA+GGG | 0.614961 | 8_2:+26644392 | Msa1242370:CDS |
| TTTGTGACAAGAATTGCTGA+AGG | 0.617408 | 8_2:+26644454 | Msa1242370:CDS |
| AAAGGCTCAAAAGGGTGAAG+AGG | 0.622355 | 8_2:+26644132 | Msa1242370:CDS |
| TTGTGACAAGAATTGCTGAA+GGG | 0.639092 | 8_2:+26644455 | Msa1242370:CDS |
| TCCTGTTCCAGAAAATAGTG+TGG | 0.670105 | 8_2:+26643502 | Msa1242370:CDS |
| ATTGCTGAAGGGAAATTGAG+TGG | 0.731467 | 8_2:+26644466 | Msa1242370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTACTCTAAAGTTATTA+TGG | + | chr8_2:26642995-26643014 | Msa1242370:exon | 15.0% |
| !! | TCTAAATCTTTATTATTTGA+AGG | - | chr8_2:26643638-26643657 | None:intergenic | 15.0% |
| !!! | TATTTACTCTAAAGTTATTA+TGG | + | chr8_2:26642995-26643014 | Msa1242370:exon | 15.0% |
| !! | TCTAAATCTTTATTATTTGA+AGG | - | chr8_2:26643638-26643657 | None:intergenic | 15.0% |
| !! | TATCATATGAATTGTACTTA+CGG | - | chr8_2:26643195-26643214 | None:intergenic | 20.0% |
| !!! | TCAAAACAGAAATATAGTTT+TGG | - | chr8_2:26643362-26643381 | None:intergenic | 20.0% |
| !!! | TATTTCTGTTTTGATTTTGT+AGG | + | chr8_2:26643368-26643387 | Msa1242370:intron | 20.0% |
| !! | TATCATATGAATTGTACTTA+CGG | - | chr8_2:26643195-26643214 | None:intergenic | 20.0% |
| !!! | TCAAAACAGAAATATAGTTT+TGG | - | chr8_2:26643362-26643381 | None:intergenic | 20.0% |
| !!! | TATTTCTGTTTTGATTTTGT+AGG | + | chr8_2:26643368-26643387 | Msa1242370:intron | 20.0% |
| ! | AAAGTCAAAATTTGTGTGTA+TGG | + | chr8_2:26643319-26643338 | Msa1242370:intron | 25.0% |
| !!! | TTTTGGTTTGATTATATAGC+AGG | - | chr8_2:26643345-26643364 | None:intergenic | 25.0% |
| !! | TGATTTTGTAGGTTTTACAA+AGG | + | chr8_2:26643379-26643398 | Msa1242370:intron | 25.0% |
| !!! | AATTTTCTCCATTTGTTAAC+TGG | - | chr8_2:26643470-26643489 | None:intergenic | 25.0% |
| ! | TAAAGATTTAGATGAAGCAA+AGG | + | chr8_2:26643646-26643665 | Msa1242370:CDS | 25.0% |
| !! | TCATTGCTAATTGTTTCTTT+AGG | - | chr8_2:26643812-26643831 | None:intergenic | 25.0% |
| !!! | CTTTTCATCTATTTGCTTTT+TGG | - | chr8_2:26643894-26643913 | None:intergenic | 25.0% |
| !! | CTTTTCATCTATTTGTGTTT+TGG | - | chr8_2:26643969-26643988 | None:intergenic | 25.0% |
| !! | CTTTTCATCTATTTGTGTTT+TGG | - | chr8_2:26643969-26643988 | None:intergenic | 25.0% |
| !! | CTTTTCATTTGTTTGTGTTT+TGG | - | chr8_2:26644116-26644135 | None:intergenic | 25.0% |
| ! | CAAAACACAAACAAATGAAA+AGG | + | chr8_2:26644114-26644133 | Msa1242370:CDS | 25.0% |
| !! | ACCAATTTCTCTATTGTTTT+TGG | - | chr8_2:26644166-26644185 | None:intergenic | 25.0% |
| !! | CTTTTCCTCTAAATTTTCTT+TGG | - | chr8_2:26644191-26644210 | None:intergenic | 25.0% |
| ! | AATTTAGAGGAAAAGATAGT+AGG | + | chr8_2:26644196-26644215 | Msa1242370:CDS | 25.0% |
| ! | AAAGTCAAAATTTGTGTGTA+TGG | + | chr8_2:26643319-26643338 | Msa1242370:intron | 25.0% |
| !!! | TTTTGGTTTGATTATATAGC+AGG | - | chr8_2:26643345-26643364 | None:intergenic | 25.0% |
| !! | TGATTTTGTAGGTTTTACAA+AGG | + | chr8_2:26643379-26643398 | Msa1242370:intron | 25.0% |
| !!! | AATTTTCTCCATTTGTTAAC+TGG | - | chr8_2:26643470-26643489 | None:intergenic | 25.0% |
| ! | TAAAGATTTAGATGAAGCAA+AGG | + | chr8_2:26643646-26643665 | Msa1242370:CDS | 25.0% |
| !! | TCATTGCTAATTGTTTCTTT+AGG | - | chr8_2:26643812-26643831 | None:intergenic | 25.0% |
| !!! | CTTTTCATCTATTTGCTTTT+TGG | - | chr8_2:26643894-26643913 | None:intergenic | 25.0% |
| !! | CTTTTCATCTATTTGTGTTT+TGG | - | chr8_2:26643969-26643988 | None:intergenic | 25.0% |
| !! | CTTTTCATCTATTTGTGTTT+TGG | - | chr8_2:26643969-26643988 | None:intergenic | 25.0% |
| !! | CTTTTCATTTGTTTGTGTTT+TGG | - | chr8_2:26644116-26644135 | None:intergenic | 25.0% |
| ! | CAAAACACAAACAAATGAAA+AGG | + | chr8_2:26644114-26644133 | Msa1242370:CDS | 25.0% |
| !! | ACCAATTTCTCTATTGTTTT+TGG | - | chr8_2:26644166-26644185 | None:intergenic | 25.0% |
| !! | CTTTTCCTCTAAATTTTCTT+TGG | - | chr8_2:26644191-26644210 | None:intergenic | 25.0% |
| ! | AATTTAGAGGAAAAGATAGT+AGG | + | chr8_2:26644196-26644215 | Msa1242370:CDS | 25.0% |
| ! | TGTATAACTACAATTTGGTG+AGG | + | chr8_2:26642960-26642979 | Msa1242370:five_prime_UTR | 30.0% |
| !! | ATGCCTTTAACTTGTTTACA+TGG | + | chr8_2:26643160-26643179 | Msa1242370:intron | 30.0% |
| !!! | CTTTTTTCTACTTCTTGTTG+AGG | - | chr8_2:26643614-26643633 | None:intergenic | 30.0% |
| !! | GTTGATTCTTCCAATTTTTG+TGG | - | chr8_2:26643704-26643723 | None:intergenic | 30.0% |
| !! | TCAATGCTTTGAGAAATTTG+AGG | - | chr8_2:26643749-26643768 | None:intergenic | 30.0% |
| ! | GTTTCTTTAGGAATTTGAGA+TGG | - | chr8_2:26643800-26643819 | None:intergenic | 30.0% |
| AATGACAATAACCCTCAAAA+GGG | + | chr8_2:26643827-26643846 | Msa1242370:CDS | 30.0% | |
| AATAGATGAAAAGCCTCAAA+AGG | + | chr8_2:26643901-26643920 | Msa1242370:CDS | 30.0% | |
| ATAGATGAAAAGCCTCAAAA+GGG | + | chr8_2:26643902-26643921 | Msa1242370:CDS | 30.0% | |
| !! | GTCTTGTTTCAAATTCTTCT+TGG | - | chr8_2:26643928-26643947 | None:intergenic | 30.0% |
| ATAGATGAAAAGCCTCAAAA+TGG | + | chr8_2:26643902-26643921 | Msa1242370:CDS | 30.0% | |
| ATAGATGAAAAGCCTCAAAA+TGG | + | chr8_2:26643902-26643921 | Msa1242370:CDS | 30.0% | |
| ! | AAATCCTCTTTACCATTTTG+AGG | - | chr8_2:26644064-26644083 | None:intergenic | 30.0% |
| TCAAAATGGTAAAGAGGATT+TGG | + | chr8_2:26644063-26644082 | Msa1242370:CDS | 30.0% | |
| AACAAATGAAAAGGCTCAAA+AGG | + | chr8_2:26644123-26644142 | Msa1242370:CDS | 30.0% | |
| ACAAATGAAAAGGCTCAAAA+GGG | + | chr8_2:26644124-26644143 | Msa1242370:CDS | 30.0% | |
| GCCAAAAACAATAGAGAAAT+TGG | + | chr8_2:26644162-26644181 | Msa1242370:CDS | 30.0% | |
| GGTTACCAAAGAAAATTTAG+AGG | + | chr8_2:26644183-26644202 | Msa1242370:CDS | 30.0% | |
| AGACATTTAGCTGAAAATGT+AGG | + | chr8_2:26644496-26644515 | Msa1242370:CDS | 30.0% | |
| ! | TGTATAACTACAATTTGGTG+AGG | + | chr8_2:26642960-26642979 | Msa1242370:five_prime_UTR | 30.0% |
| !! | ATGCCTTTAACTTGTTTACA+TGG | + | chr8_2:26643160-26643179 | Msa1242370:intron | 30.0% |
| !!! | CTTTTTTCTACTTCTTGTTG+AGG | - | chr8_2:26643614-26643633 | None:intergenic | 30.0% |
| !! | GTTGATTCTTCCAATTTTTG+TGG | - | chr8_2:26643704-26643723 | None:intergenic | 30.0% |
| !! | TCAATGCTTTGAGAAATTTG+AGG | - | chr8_2:26643749-26643768 | None:intergenic | 30.0% |
| ! | GTTTCTTTAGGAATTTGAGA+TGG | - | chr8_2:26643800-26643819 | None:intergenic | 30.0% |
| AATGACAATAACCCTCAAAA+GGG | + | chr8_2:26643827-26643846 | Msa1242370:CDS | 30.0% | |
| AATAGATGAAAAGCCTCAAA+AGG | + | chr8_2:26643901-26643920 | Msa1242370:CDS | 30.0% | |
| ATAGATGAAAAGCCTCAAAA+GGG | + | chr8_2:26643902-26643921 | Msa1242370:CDS | 30.0% | |
| !! | GTCTTGTTTCAAATTCTTCT+TGG | - | chr8_2:26643928-26643947 | None:intergenic | 30.0% |
| ATAGATGAAAAGCCTCAAAA+TGG | + | chr8_2:26643902-26643921 | Msa1242370:CDS | 30.0% | |
| ATAGATGAAAAGCCTCAAAA+TGG | + | chr8_2:26643902-26643921 | Msa1242370:CDS | 30.0% | |
| ! | AAATCCTCTTTACCATTTTG+AGG | - | chr8_2:26644064-26644083 | None:intergenic | 30.0% |
| TCAAAATGGTAAAGAGGATT+TGG | + | chr8_2:26644063-26644082 | Msa1242370:CDS | 30.0% | |
| AACAAATGAAAAGGCTCAAA+AGG | + | chr8_2:26644123-26644142 | Msa1242370:CDS | 30.0% | |
| ACAAATGAAAAGGCTCAAAA+GGG | + | chr8_2:26644124-26644143 | Msa1242370:CDS | 30.0% | |
| GCCAAAAACAATAGAGAAAT+TGG | + | chr8_2:26644162-26644181 | Msa1242370:CDS | 30.0% | |
| GGTTACCAAAGAAAATTTAG+AGG | + | chr8_2:26644183-26644202 | Msa1242370:CDS | 30.0% | |
| AGACATTTAGCTGAAAATGT+AGG | + | chr8_2:26644496-26644515 | Msa1242370:CDS | 30.0% | |
| GTTTCTTTCATCTCTGATAG+AGG | - | chr8_2:26643101-26643120 | None:intergenic | 35.0% | |
| CAGGAAGATAAACATGAAGA+AGG | - | chr8_2:26643136-26643155 | None:intergenic | 35.0% | |
| CTTCTTCATGTTTATCTTCC+TGG | + | chr8_2:26643134-26643153 | Msa1242370:CDS | 35.0% | |
| ! | ACAAGTTAAAGGCATATACC+AGG | - | chr8_2:26643155-26643174 | None:intergenic | 35.0% |
| CGACCATGTAAACAAGTTAA+AGG | - | chr8_2:26643166-26643185 | None:intergenic | 35.0% | |
| ! | TCAAATGAAGATTGAGTTGC+TGG | + | chr8_2:26643403-26643422 | Msa1242370:CDS | 35.0% |
| ! | CTCCATTTGTTAACTGGAAT+CGG | - | chr8_2:26643464-26643483 | None:intergenic | 35.0% |
| CTTGAAGCCAAATTTGAACA+AGG | + | chr8_2:26643533-26643552 | Msa1242370:CDS | 35.0% | |
| GAGAGTTCCTTGTTCAAATT+TGG | - | chr8_2:26643543-26643562 | None:intergenic | 35.0% | |
| ACTTGTGATGATTGTGAAGT+TGG | - | chr8_2:26643587-26643606 | None:intergenic | 35.0% | |
| !!! | TTTTTGTGGTGGTGGAATAT+TGG | - | chr8_2:26643690-26643709 | None:intergenic | 35.0% |
| TATTCCACCACCACAAAAAT+TGG | + | chr8_2:26643691-26643710 | Msa1242370:CDS | 35.0% | |
| ! | GATTCTTCCAATTTTTGTGG+TGG | - | chr8_2:26643701-26643720 | None:intergenic | 35.0% |
| CAATGACAATAACCCTCAAA+AGG | + | chr8_2:26643826-26643845 | Msa1242370:CDS | 35.0% | |
| ! | ATTCTTGTTGACCCTTTTGA+GGG | - | chr8_2:26643841-26643860 | None:intergenic | 35.0% |
| ! | AATTCTTGTTGACCCTTTTG+AGG | - | chr8_2:26643842-26643861 | None:intergenic | 35.0% |
| !!! | TTGCTTTTTGGTTGTGTCTA+TGG | - | chr8_2:26643882-26643901 | None:intergenic | 35.0% |
| ! | TCCAATACTTGACCATTTTG+AGG | - | chr8_2:26643992-26644011 | None:intergenic | 35.0% |
| !!! | TTGTGTTTTGGTTCTCTCTA+TGG | - | chr8_2:26644029-26644048 | None:intergenic | 35.0% |
| AAAGCCTCAAAATGGTAAAG+AGG | + | chr8_2:26644057-26644076 | Msa1242370:CDS | 35.0% | |
| GAAAGAAAGGAACTCAAAGA+AGG | + | chr8_2:26644240-26644259 | Msa1242370:CDS | 35.0% | |
| TGATTCTTGCTTGACTCATA+AGG | - | chr8_2:26644292-26644311 | None:intergenic | 35.0% | |
| !!! | TTTTCCTTCTCTGGAACATT+TGG | - | chr8_2:26644358-26644377 | None:intergenic | 35.0% |
| AAATGTTCCAGAGAAGGAAA+AGG | + | chr8_2:26644357-26644376 | Msa1242370:CDS | 35.0% | |
| AATTAGCTGCTACATCTTCT+CGG | + | chr8_2:26644431-26644450 | Msa1242370:CDS | 35.0% | |
| TTTGTGACAAGAATTGCTGA+AGG | + | chr8_2:26644454-26644473 | Msa1242370:CDS | 35.0% | |
| TTGTGACAAGAATTGCTGAA+GGG | + | chr8_2:26644455-26644474 | Msa1242370:CDS | 35.0% | |
| ! | GTTCTAGTTATTGCTGCATT+TGG | + | chr8_2:26644526-26644545 | Msa1242370:CDS | 35.0% |
| GGAAAACCAATATGACACAT+AGG | - | chr8_2:26644554-26644573 | None:intergenic | 35.0% | |
| GTTTCTTTCATCTCTGATAG+AGG | - | chr8_2:26643101-26643120 | None:intergenic | 35.0% | |
| CAGGAAGATAAACATGAAGA+AGG | - | chr8_2:26643136-26643155 | None:intergenic | 35.0% | |
| CTTCTTCATGTTTATCTTCC+TGG | + | chr8_2:26643134-26643153 | Msa1242370:CDS | 35.0% | |
| ! | ACAAGTTAAAGGCATATACC+AGG | - | chr8_2:26643155-26643174 | None:intergenic | 35.0% |
| CGACCATGTAAACAAGTTAA+AGG | - | chr8_2:26643166-26643185 | None:intergenic | 35.0% | |
| ! | TCAAATGAAGATTGAGTTGC+TGG | + | chr8_2:26643403-26643422 | Msa1242370:CDS | 35.0% |
| ! | CTCCATTTGTTAACTGGAAT+CGG | - | chr8_2:26643464-26643483 | None:intergenic | 35.0% |
| CTTGAAGCCAAATTTGAACA+AGG | + | chr8_2:26643533-26643552 | Msa1242370:CDS | 35.0% | |
| GAGAGTTCCTTGTTCAAATT+TGG | - | chr8_2:26643543-26643562 | None:intergenic | 35.0% | |
| ACTTGTGATGATTGTGAAGT+TGG | - | chr8_2:26643587-26643606 | None:intergenic | 35.0% | |
| !!! | TTTTTGTGGTGGTGGAATAT+TGG | - | chr8_2:26643690-26643709 | None:intergenic | 35.0% |
| TATTCCACCACCACAAAAAT+TGG | + | chr8_2:26643691-26643710 | Msa1242370:CDS | 35.0% | |
| ! | GATTCTTCCAATTTTTGTGG+TGG | - | chr8_2:26643701-26643720 | None:intergenic | 35.0% |
| CAATGACAATAACCCTCAAA+AGG | + | chr8_2:26643826-26643845 | Msa1242370:CDS | 35.0% | |
| ! | ATTCTTGTTGACCCTTTTGA+GGG | - | chr8_2:26643841-26643860 | None:intergenic | 35.0% |
| ! | AATTCTTGTTGACCCTTTTG+AGG | - | chr8_2:26643842-26643861 | None:intergenic | 35.0% |
| !!! | TTGCTTTTTGGTTGTGTCTA+TGG | - | chr8_2:26643882-26643901 | None:intergenic | 35.0% |
| ! | TCCAATACTTGACCATTTTG+AGG | - | chr8_2:26643992-26644011 | None:intergenic | 35.0% |
| !!! | TTGTGTTTTGGTTCTCTCTA+TGG | - | chr8_2:26644029-26644048 | None:intergenic | 35.0% |
| AAAGCCTCAAAATGGTAAAG+AGG | + | chr8_2:26644057-26644076 | Msa1242370:CDS | 35.0% | |
| GAAAGAAAGGAACTCAAAGA+AGG | + | chr8_2:26644240-26644259 | Msa1242370:CDS | 35.0% | |
| TGATTCTTGCTTGACTCATA+AGG | - | chr8_2:26644292-26644311 | None:intergenic | 35.0% | |
| !!! | TTTTCCTTCTCTGGAACATT+TGG | - | chr8_2:26644358-26644377 | None:intergenic | 35.0% |
| AAATGTTCCAGAGAAGGAAA+AGG | + | chr8_2:26644357-26644376 | Msa1242370:CDS | 35.0% | |
| AATTAGCTGCTACATCTTCT+CGG | + | chr8_2:26644431-26644450 | Msa1242370:CDS | 35.0% | |
| TTTGTGACAAGAATTGCTGA+AGG | + | chr8_2:26644454-26644473 | Msa1242370:CDS | 35.0% | |
| TTGTGACAAGAATTGCTGAA+GGG | + | chr8_2:26644455-26644474 | Msa1242370:CDS | 35.0% | |
| ! | GTTCTAGTTATTGCTGCATT+TGG | + | chr8_2:26644526-26644545 | Msa1242370:CDS | 35.0% |
| GGAAAACCAATATGACACAT+AGG | - | chr8_2:26644554-26644573 | None:intergenic | 35.0% | |
| ! | CATTTAGAGCACCAACTTTC+CGG | + | chr8_2:26643036-26643055 | Msa1242370:CDS | 40.0% |
| ACATGAAGAAGGTAAGCTTC+AGG | - | chr8_2:26643125-26643144 | None:intergenic | 40.0% | |
| ! | GACCGATTCCAGTTAACAAA+TGG | + | chr8_2:26643459-26643478 | Msa1242370:CDS | 40.0% |
| !! | TTTCTGGAACAGGATATGCT+TGG | - | chr8_2:26643496-26643515 | None:intergenic | 40.0% |
| TCCTGTTCCAGAAAATAGTG+TGG | + | chr8_2:26643502-26643521 | Msa1242370:CDS | 40.0% | |
| ! | TTCTCTGCCACACTATTTTC+TGG | - | chr8_2:26643512-26643531 | None:intergenic | 40.0% |
| ! | TCTTCCAATTTTTGTGGTGG+TGG | - | chr8_2:26643698-26643717 | None:intergenic | 40.0% |
| !!! | GTGTCTATGGATGTTGGTTT+TGG | - | chr8_2:26643869-26643888 | None:intergenic | 40.0% |
| TTGGTTGTGTCTATGGATGT+TGG | - | chr8_2:26643875-26643894 | None:intergenic | 40.0% | |
| ! | AATTCTTCTTGGCCCTTTTG+AGG | - | chr8_2:26643917-26643936 | None:intergenic | 40.0% |
| ! | TTGGCTCTCTCTATTGATGT+TGG | - | chr8_2:26643950-26643969 | None:intergenic | 40.0% |
| GCCTCAAAATGGTCAAGTAT+TGG | + | chr8_2:26643988-26644007 | Msa1242370:CDS | 40.0% | |
| ! | TTGGTTCTCTCTATGGATGT+TGG | - | chr8_2:26644022-26644041 | None:intergenic | 40.0% |
| !!! | TTGTGTTTTGGTTCTCTCTG+TGG | - | chr8_2:26644104-26644123 | None:intergenic | 40.0% |
| CTGAAGATGCTGAGAAAGAA+AGG | + | chr8_2:26644227-26644246 | Msa1242370:CDS | 40.0% | |
| AGAAAGGAACTCAAAGAAGG+AGG | + | chr8_2:26644243-26644262 | Msa1242370:CDS | 40.0% | |
| AGAATTCCTCCCAATCAAGA+AGG | + | chr8_2:26644391-26644410 | Msa1242370:CDS | 40.0% | |
| GAATTCCTCCCAATCAAGAA+GGG | + | chr8_2:26644392-26644411 | Msa1242370:CDS | 40.0% | |
| CCATTCTTCCCTTCTTGATT+GGG | - | chr8_2:26644403-26644422 | None:intergenic | 40.0% | |
| TCCATTCTTCCCTTCTTGAT+TGG | - | chr8_2:26644404-26644423 | None:intergenic | 40.0% | |
| ATTGCTGAAGGGAAATTGAG+TGG | + | chr8_2:26644466-26644485 | Msa1242370:CDS | 40.0% | |
| TTGGAGCCTATGTGTCATAT+TGG | + | chr8_2:26644545-26644564 | Msa1242370:CDS | 40.0% | |
| ! | CATTTAGAGCACCAACTTTC+CGG | + | chr8_2:26643036-26643055 | Msa1242370:CDS | 40.0% |
| ACATGAAGAAGGTAAGCTTC+AGG | - | chr8_2:26643125-26643144 | None:intergenic | 40.0% | |
| ! | GACCGATTCCAGTTAACAAA+TGG | + | chr8_2:26643459-26643478 | Msa1242370:CDS | 40.0% |
| !! | TTTCTGGAACAGGATATGCT+TGG | - | chr8_2:26643496-26643515 | None:intergenic | 40.0% |
| TCCTGTTCCAGAAAATAGTG+TGG | + | chr8_2:26643502-26643521 | Msa1242370:CDS | 40.0% | |
| ! | TTCTCTGCCACACTATTTTC+TGG | - | chr8_2:26643512-26643531 | None:intergenic | 40.0% |
| ! | TCTTCCAATTTTTGTGGTGG+TGG | - | chr8_2:26643698-26643717 | None:intergenic | 40.0% |
| !!! | GTGTCTATGGATGTTGGTTT+TGG | - | chr8_2:26643869-26643888 | None:intergenic | 40.0% |
| TTGGTTGTGTCTATGGATGT+TGG | - | chr8_2:26643875-26643894 | None:intergenic | 40.0% | |
| ! | AATTCTTCTTGGCCCTTTTG+AGG | - | chr8_2:26643917-26643936 | None:intergenic | 40.0% |
| ! | TTGGCTCTCTCTATTGATGT+TGG | - | chr8_2:26643950-26643969 | None:intergenic | 40.0% |
| GCCTCAAAATGGTCAAGTAT+TGG | + | chr8_2:26643988-26644007 | Msa1242370:CDS | 40.0% | |
| ! | TTGGTTCTCTCTATGGATGT+TGG | - | chr8_2:26644022-26644041 | None:intergenic | 40.0% |
| !!! | TTGTGTTTTGGTTCTCTCTG+TGG | - | chr8_2:26644104-26644123 | None:intergenic | 40.0% |
| CTGAAGATGCTGAGAAAGAA+AGG | + | chr8_2:26644227-26644246 | Msa1242370:CDS | 40.0% | |
| AGAAAGGAACTCAAAGAAGG+AGG | + | chr8_2:26644243-26644262 | Msa1242370:CDS | 40.0% | |
| AGAATTCCTCCCAATCAAGA+AGG | + | chr8_2:26644391-26644410 | Msa1242370:CDS | 40.0% | |
| GAATTCCTCCCAATCAAGAA+GGG | + | chr8_2:26644392-26644411 | Msa1242370:CDS | 40.0% | |
| CCATTCTTCCCTTCTTGATT+GGG | - | chr8_2:26644403-26644422 | None:intergenic | 40.0% | |
| TCCATTCTTCCCTTCTTGAT+TGG | - | chr8_2:26644404-26644423 | None:intergenic | 40.0% | |
| ATTGCTGAAGGGAAATTGAG+TGG | + | chr8_2:26644466-26644485 | Msa1242370:CDS | 40.0% | |
| TTGGAGCCTATGTGTCATAT+TGG | + | chr8_2:26644545-26644564 | Msa1242370:CDS | 40.0% | |
| ! | ACAATGACACAGTTGATGCG+AGG | - | chr8_2:26643266-26643285 | None:intergenic | 45.0% |
| TGGACATGTCACGAAAGTTG+AGG | + | chr8_2:26643423-26643442 | Msa1242370:CDS | 45.0% | |
| GGACATGTCACGAAAGTTGA+GGG | + | chr8_2:26643424-26643443 | Msa1242370:CDS | 45.0% | |
| TCACGAAAGTTGAGGGTTAC+AGG | + | chr8_2:26643431-26643450 | Msa1242370:CDS | 45.0% | |
| !!! | GCCACACTATTTTCTGGAAC+AGG | - | chr8_2:26643506-26643525 | None:intergenic | 45.0% |
| ! | TTGGTTCTCTCTGTGGATGT+TGG | - | chr8_2:26644097-26644116 | None:intergenic | 45.0% |
| AAAGGCTCAAAAGGGTGAAG+AGG | + | chr8_2:26644132-26644151 | Msa1242370:CDS | 45.0% | |
| TGCTCCAAATGTTCCAGAGA+AGG | + | chr8_2:26644351-26644370 | Msa1242370:CDS | 45.0% | |
| ! | CAAGCTTCCTTTTCCTTCTC+TGG | - | chr8_2:26644367-26644386 | None:intergenic | 45.0% |
| TTCTTCCCTTCTTGATTGGG+AGG | - | chr8_2:26644400-26644419 | None:intergenic | 45.0% | |
| CCCAATCAAGAAGGGAAGAA+TGG | + | chr8_2:26644400-26644419 | Msa1242370:CDS | 45.0% | |
| ! | ACAATGACACAGTTGATGCG+AGG | - | chr8_2:26643266-26643285 | None:intergenic | 45.0% |
| TGGACATGTCACGAAAGTTG+AGG | + | chr8_2:26643423-26643442 | Msa1242370:CDS | 45.0% | |
| GGACATGTCACGAAAGTTGA+GGG | + | chr8_2:26643424-26643443 | Msa1242370:CDS | 45.0% | |
| TCACGAAAGTTGAGGGTTAC+AGG | + | chr8_2:26643431-26643450 | Msa1242370:CDS | 45.0% | |
| !!! | GCCACACTATTTTCTGGAAC+AGG | - | chr8_2:26643506-26643525 | None:intergenic | 45.0% |
| ! | TTGGTTCTCTCTGTGGATGT+TGG | - | chr8_2:26644097-26644116 | None:intergenic | 45.0% |
| AAAGGCTCAAAAGGGTGAAG+AGG | + | chr8_2:26644132-26644151 | Msa1242370:CDS | 45.0% | |
| TGCTCCAAATGTTCCAGAGA+AGG | + | chr8_2:26644351-26644370 | Msa1242370:CDS | 45.0% | |
| ! | CAAGCTTCCTTTTCCTTCTC+TGG | - | chr8_2:26644367-26644386 | None:intergenic | 45.0% |
| TTCTTCCCTTCTTGATTGGG+AGG | - | chr8_2:26644400-26644419 | None:intergenic | 45.0% | |
| CCCAATCAAGAAGGGAAGAA+TGG | + | chr8_2:26644400-26644419 | Msa1242370:CDS | 45.0% | |
| GAAAGTTGCGACCGGAAAGT+TGG | - | chr8_2:26643050-26643069 | None:intergenic | 50.0% | |
| GACGAACTGAAAGTTGCGAC+CGG | - | chr8_2:26643058-26643077 | None:intergenic | 50.0% | |
| GAAAGTTGCGACCGGAAAGT+TGG | - | chr8_2:26643050-26643069 | None:intergenic | 50.0% | |
| GACGAACTGAAAGTTGCGAC+CGG | - | chr8_2:26643058-26643077 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 26642956 | 26644579 | 26642956 | ID=Msa1242370;Name=Msa1242370 |
| chr8_2 | mRNA | 26642956 | 26644579 | 26642956 | ID=Msa1242370-mRNA-1;Parent=Msa1242370;Name=Msa1242370-mRNA-1;_AED=0.01;_eAED=0.01;_QI=58|1|0.5|1|1|1|2|0|443 |
| chr8_2 | exon | 26642956 | 26643155 | 26642956 | ID=Msa1242370-mRNA-1:exon:9369;Parent=Msa1242370-mRNA-1 |
| chr8_2 | exon | 26643390 | 26644579 | 26643390 | ID=Msa1242370-mRNA-1:exon:9370;Parent=Msa1242370-mRNA-1 |
| chr8_2 | five_prime_UTR | 26642956 | 26643013 | 26642956 | ID=Msa1242370-mRNA-1:five_prime_utr;Parent=Msa1242370-mRNA-1 |
| chr8_2 | CDS | 26643014 | 26643155 | 26643014 | ID=Msa1242370-mRNA-1:cds;Parent=Msa1242370-mRNA-1 |
| chr8_2 | CDS | 26643390 | 26644579 | 26643390 | ID=Msa1242370-mRNA-1:cds;Parent=Msa1242370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
