AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0783980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0783980 MtrunA17_Chr5g0437601 99.063 427 4 0 1 427 1 427 0.0 888
Msa0783980 MtrunA17_Chr3g0114101 74.596 433 101 5 4 427 1 433 0.0 659
Msa0783980 MtrunA17_Chr7g0243301 52.011 348 161 3 83 425 64 410 5.32e-133 388
Msa0783980 MtrunA17_Chr4g0005491 51.289 349 164 3 83 426 62 409 8.86e-133 388
Msa0783980 MtrunA17_Chr4g0005481 53.079 341 157 2 81 421 106 443 4.60e-130 382
Msa0783980 MtrunA17_Chr4g0006991 48.986 345 174 2 81 424 84 427 1.81e-128 377
Msa0783980 MtrunA17_Chr8g0360521 50.432 347 167 3 80 425 68 410 2.76e-128 377
Msa0783980 MtrunA17_Chr3g0113671 51.576 349 163 4 80 424 103 449 1.71e-127 376
Msa0783980 MtrunA17_Chr7g0242701 41.882 425 237 4 10 424 3 427 1.59e-119 355
Msa0783980 MtrunA17_Chr5g0437291 48.286 350 176 3 81 425 163 512 2.53e-118 355
Msa0783980 MtrunA17_Chr3g0105301 36.667 360 202 8 76 426 36 378 8.25e-77 243
Msa0783980 MtrunA17_Chr5g0430371 36.675 379 207 9 64 426 40 401 8.28e-77 244
Msa0783980 MtrunA17_Chr1g0210771 38.617 347 185 10 83 424 59 382 2.41e-75 239
Msa0783980 MtrunA17_Chr4g0041011 34.351 393 225 9 32 424 4 363 2.69e-75 239
Msa0783980 MtrunA17_Chr5g0413271 36.932 352 206 8 77 425 139 477 4.62e-75 242
Msa0783980 MtrunA17_Chr2g0325481 37.318 343 190 7 83 425 50 367 8.88e-75 238
Msa0783980 MtrunA17_Chr1g0175671 36.723 354 200 8 83 425 170 510 4.62e-73 238
Msa0783980 MtrunA17_Chr7g0258851 37.255 357 194 9 83 425 248 588 1.36e-72 239
Msa0783980 MtrunA17_Chr1g0171171 34.673 398 230 11 27 424 8 375 2.46e-72 232
Msa0783980 MtrunA17_Chr3g0097891 35.127 353 203 8 75 425 23 351 2.55e-72 231
Msa0783980 MtrunA17_Chr7g0259711 31.757 444 265 14 2 425 8 433 7.85e-71 230
Msa0783980 MtrunA17_Chr4g0071391 36.857 350 201 8 83 424 109 446 9.88e-71 230
Msa0783980 MtrunA17_Chr2g0287901 36.389 360 202 11 76 422 90 435 1.37e-69 227
Msa0783980 MtrunA17_Chr2g0283581 35.176 398 210 11 27 424 9 358 8.83e-69 222
Msa0783980 MtrunA17_Chr2g0314801 36.286 350 192 8 77 421 27 350 1.08e-68 221
Msa0783980 MtrunA17_Chr3g0085081 36.103 349 189 10 81 424 29 348 3.20e-68 220
Msa0783980 MtrunA17_Chr7g0269991 37.006 354 188 10 83 424 137 467 5.60e-68 223
Msa0783980 MtrunA17_Chr5g0413851 37.752 347 188 10 80 424 39 359 1.55e-67 219
Msa0783980 MtrunA17_Chr4g0045941 33.903 351 208 8 75 425 25 351 4.22e-67 217
Msa0783980 MtrunA17_Chr3g0085071 36.103 349 189 10 81 424 44 363 6.34e-67 217
Msa0783980 MtrunA17_Chr1g0213281 35.311 354 210 9 82 426 174 517 2.20e-66 221
Msa0783980 MtrunA17_Chr4g0068111 33.994 353 211 7 83 425 114 454 4.31e-66 218
Msa0783980 MtrunA17_Chr3g0091031 35.530 349 191 10 81 424 29 348 5.07e-66 214
Msa0783980 MtrunA17_Chr8g0368461 33.333 372 213 10 76 425 171 529 8.00e-63 211
Msa0783980 MtrunA17_Chr4g0045951 33.908 348 206 8 78 425 40 363 1.09e-62 206
Msa0783980 MtrunA17_Chr2g0314791 35.393 356 185 13 80 425 26 346 1.97e-60 200
Msa0783980 MtrunA17_Chr8g0384151 28.440 436 260 13 5 425 19 417 8.08e-55 187
Msa0783980 MtrunA17_Chr3g0126021 29.692 357 218 8 80 425 126 460 8.40e-52 180
Msa0783980 MtrunA17_Chr6g0456681 31.389 360 218 10 81 424 62 408 2.83e-44 159
Msa0783980 MtrunA17_Chr1g0209921 34.043 235 143 6 81 313 42 266 1.86e-42 150
Msa0783980 MtrunA17_Chr6g0456691 28.111 434 259 16 16 424 14 419 4.22e-40 148
Msa0783980 MtrunA17_Chr1g0178081 29.261 352 180 9 81 425 53 342 5.91e-40 146
Msa0783980 MtrunA17_Chr8g0347321 28.852 357 227 12 83 424 95 439 1.12e-39 147
Msa0783980 MtrunA17_Chr1g0188191 27.889 398 254 16 43 421 195 578 1.30e-39 149
Msa0783980 MtrunA17_Chr8g0384421 30.137 365 215 13 79 424 129 472 3.94e-38 144
Msa0783980 MtrunA17_Chr6g0476041 28.011 357 231 14 81 421 165 511 5.92e-37 141
Msa0783980 MtrunA17_Chr6g0451321 28.302 371 228 14 73 424 106 457 1.04e-36 140
Msa0783980 MtrunA17_Chr8g0391481 29.076 368 221 15 79 424 23 372 7.28e-36 135
Msa0783980 MtrunA17_Chr5g0414061 27.887 355 227 12 83 421 94 435 3.28e-35 135
Msa0783980 MtrunA17_Chr2g0283851 28.453 362 213 15 84 420 56 396 7.03e-35 133
Msa0783980 MtrunA17_Chr5g0414091 28.142 366 226 12 76 420 78 427 2.73e-34 132
Msa0783980 MtrunA17_Chr3g0140371 28.333 360 223 13 80 421 15 357 6.46e-33 127
Msa0783980 MtrunA17_Chr7g0226991 27.348 362 227 14 80 421 54 399 9.52e-33 127
Msa0783980 MtrunA17_Chr5g0414051 25.613 367 227 13 80 421 72 417 1.95e-32 127
Msa0783980 MtrunA17_Chr8g0387921 26.479 355 231 12 83 420 74 415 3.92e-32 126
Msa0783980 MtrunA17_Chr5g0414041 28.571 357 224 12 83 421 87 430 2.41e-31 124
Msa0783980 MtrunA17_Chr4g0049421 26.997 363 218 16 83 420 48 388 6.95e-30 119
Msa0783980 MtrunA17_Chr6g0455901 26.703 367 231 12 79 424 67 416 2.09e-29 119
Msa0783980 MtrunA17_Chr4g0070341 27.704 379 202 16 81 424 130 471 2.07e-27 113
Msa0783980 MtrunA17_Chr7g0221271 40.769 130 76 1 81 210 77 205 8.67e-27 106
Msa0783980 MtrunA17_Chr7g0221291 48.387 93 47 1 83 175 79 170 4.00e-25 100
Msa0783980 MtrunA17_Chr2g0287931 36.134 119 66 4 143 252 1 118 1.92e-15 72.8
Msa0783980 MtrunA17_Chr3g0085101 38.318 107 62 3 280 385 5 108 5.51e-13 65.5
Msa0783980 MtrunA17_Chr7g0221281 25.311 241 155 10 197 424 8 236 6.74e-12 65.5
Msa0783980 MtrunA17_Chr2g0287911 42.188 64 29 2 76 139 54 109 1.48e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0783980 AT2G40320.1 78.293 410 87 1 17 426 17 424 0.0 686
Msa0783980 AT3G11030.1 62.500 448 138 4 8 427 6 451 0.0 586
Msa0783980 AT5G01620.2 50.571 350 169 2 73 421 100 446 3.34e-130 383
Msa0783980 AT5G01620.1 50.571 350 169 2 73 421 100 446 3.34e-130 383
Msa0783980 AT5G01620.3 50.571 350 169 2 73 421 108 454 7.45e-130 382
Msa0783980 AT3G55990.1 53.009 349 158 3 81 425 138 484 1.04e-128 380
Msa0783980 AT5G01360.2 48.986 345 175 1 81 424 34 378 1.71e-127 374
Msa0783980 AT1G73140.1 44.444 378 193 3 49 425 45 406 4.21e-127 374
Msa0783980 AT5G01360.1 48.986 345 175 1 81 424 90 434 7.76e-127 374
Msa0783980 AT2G40150.1 51.977 354 158 3 81 424 69 420 2.18e-126 372
Msa0783980 AT2G38320.1 45.135 370 197 3 61 425 37 405 3.97e-117 348
Msa0783980 AT2G40160.1 40.821 414 229 7 23 426 18 425 3.90e-108 326
Msa0783980 AT2G40160.2 41.176 408 224 7 23 420 18 419 1.13e-107 325
Msa0783980 AT2G38320.2 47.500 320 162 3 111 425 4 322 3.49e-106 317
Msa0783980 AT3G12060.1 38.259 379 204 9 61 425 174 536 8.62e-82 262
Msa0783980 AT5G06700.1 38.547 358 192 10 81 425 253 595 1.97e-78 254
Msa0783980 AT3G62390.1 37.430 358 198 9 78 426 133 473 4.72e-76 244
Msa0783980 AT1G78710.1 35.714 350 198 8 78 425 33 357 9.79e-76 240
Msa0783980 AT5G20590.1 36.639 363 209 8 72 425 130 480 7.54e-75 242
Msa0783980 AT2G40160.3 39.799 299 166 5 23 313 18 310 1.03e-74 236
Msa0783980 AT3G14850.2 37.572 346 185 7 81 421 32 351 4.67e-73 233
Msa0783980 AT5G19160.1 34.186 430 239 14 20 422 30 442 1.56e-72 235
Msa0783980 AT2G30900.1 35.714 350 194 10 83 426 43 367 1.01e-71 230
Msa0783980 AT1G29050.1 35.159 347 201 6 78 424 56 378 2.05e-71 230
Msa0783980 AT5G58600.1 35.411 353 203 7 83 426 66 402 1.53e-70 228
Msa0783980 AT5G49340.1 35.854 357 211 8 78 425 95 442 3.12e-70 229
Msa0783980 AT2G30010.1 35.309 388 214 10 54 426 33 398 3.18e-70 227
Msa0783980 AT2G34070.1 34.758 351 198 8 78 424 60 383 3.68e-70 227
Msa0783980 AT2G42570.1 34.409 372 216 9 54 425 22 365 3.87e-70 226
Msa0783980 AT2G30010.2 35.309 388 214 10 54 426 76 441 9.88e-70 227
Msa0783980 AT3G06080.2 32.118 439 247 12 15 422 25 443 1.02e-69 228
Msa0783980 AT2G31110.2 36.337 344 191 9 83 424 45 362 2.22e-69 224
Msa0783980 AT1G60790.1 34.551 356 212 9 81 425 188 533 3.93e-68 226
Msa0783980 AT3G54260.1 36.578 339 195 8 83 420 51 370 3.90e-67 219
Msa0783980 AT5G06230.2 34.699 366 195 11 83 425 21 365 9.33e-62 204
Msa0783980 AT5G06230.1 34.699 366 195 11 83 425 62 406 2.78e-61 204
Msa0783980 AT1G48880.1 29.858 422 233 14 23 425 63 440 3.56e-56 192
Msa0783980 AT1G78710.2 31.034 348 164 8 78 425 26 297 6.09e-56 187
Msa0783980 AT3G11570.1 33.828 337 198 7 100 425 98 420 2.29e-54 187
Msa0783980 AT5G19160.2 33.866 313 188 8 20 317 30 338 4.54e-53 181
Msa0783980 AT3G62390.2 38.554 249 138 6 78 317 133 375 1.87e-52 181
Msa0783980 AT5G20590.2 37.450 251 144 5 72 313 130 376 3.91e-50 174
Msa0783980 AT3G06080.1 35.743 249 146 5 76 313 93 338 3.29e-49 171
Msa0783980 AT2G30900.2 36.134 238 135 7 83 315 43 268 1.81e-46 161
Msa0783980 AT2G31110.3 35.526 228 134 5 83 308 45 261 5.74e-45 157
Msa0783980 AT1G70230.1 29.775 356 219 11 80 424 76 411 1.22e-43 158
Msa0783980 AT5G58600.2 33.473 239 140 5 83 315 66 291 8.76e-43 152
Msa0783980 AT2G34070.2 32.364 275 156 7 154 424 1 249 2.14e-42 150
Msa0783980 AT3G28150.1 28.235 425 244 16 18 422 25 408 4.10e-42 154
Msa0783980 AT3G14850.1 34.066 273 150 6 154 421 1 248 5.86e-42 149
Msa0783980 AT5G06230.3 34.921 252 133 7 83 313 62 303 2.74e-41 149
Msa0783980 AT5G15900.1 29.592 392 245 12 50 424 32 409 8.46e-41 150
Msa0783980 AT5G15900.2 29.592 392 245 12 50 424 51 428 1.03e-40 150
Msa0783980 AT5G15890.1 28.933 356 219 10 80 421 184 519 5.88e-39 147
Msa0783980 AT5G64470.3 30.199 351 217 13 83 420 55 390 3.60e-38 142
Msa0783980 AT3G02440.1 27.809 356 229 12 83 424 127 468 7.20e-38 143
Msa0783980 AT3G02440.2 27.528 356 230 11 83 424 135 476 9.01e-38 143
Msa0783980 AT5G64020.1 29.301 372 213 16 83 424 57 408 1.08e-37 141
Msa0783980 AT5G64470.2 29.775 356 218 12 83 420 55 396 3.88e-37 140
Msa0783980 AT1G01430.1 29.944 354 223 12 83 420 99 443 2.49e-36 139
Msa0783980 AT4G23790.1 25.059 427 276 17 21 424 22 427 2.28e-35 135
Msa0783980 AT4G25360.1 26.630 368 226 13 80 421 172 521 2.33e-35 137
Msa0783980 AT4G25360.2 26.630 368 226 13 80 421 172 521 2.33e-35 137
Msa0783980 AT4G01080.1 29.429 350 221 14 83 420 91 426 4.85e-34 132
Msa0783980 AT5G51640.1 27.174 368 225 15 80 421 135 485 5.83e-34 133
Msa0783980 AT2G14530.1 26.519 362 229 10 83 424 62 406 6.27e-34 131
Msa0783980 AT2G37720.1 28.804 368 208 16 83 424 143 482 7.94e-34 132
Msa0783980 AT2G31110.1 33.621 232 127 8 195 424 8 214 6.63e-31 118
Msa0783980 AT5G20680.6 26.053 380 207 16 81 424 116 457 3.63e-29 119
Msa0783980 AT5G20680.2 26.053 380 207 16 81 424 192 533 5.08e-29 119
Msa0783980 AT5G20680.4 26.053 380 207 16 81 424 210 551 6.54e-29 119
Msa0783980 AT5G20680.1 26.053 380 207 16 81 424 210 551 6.54e-29 119
Msa0783980 AT5G20680.3 26.053 380 207 16 81 424 210 551 6.54e-29 119
Msa0783980 AT5G20680.5 26.053 380 207 16 81 424 210 551 6.54e-29 119
Msa0783980 AT4G11090.1 23.040 421 288 15 23 421 16 422 2.37e-27 113
Msa0783980 AT5G64470.1 28.358 268 177 9 83 340 55 317 4.88e-24 102
Msa0783980 AT5G64470.4 28.090 267 177 9 83 339 55 316 1.80e-23 100

Find 126 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACACATTTGTTCAAAATAA+AGG 0.185985 5_2:+68320726 Msa0783980:three_prime_UTR
TACCTGGTCTTCAAGATAAT+TGG 0.191574 5_2:+68320661 Msa0783980:CDS
TTGGAAAGGTGTTGACATTT+TGG 0.194283 5_2:+68319418 Msa0783980:CDS
TGATTAATAATTCAACATAT+TGG 0.211688 5_2:+68320433 Msa0783980:CDS
GATTAATAATTCAACATATT+GGG 0.228551 5_2:+68320434 Msa0783980:CDS
TAAATAAACATGGTAGAAAT+TGG 0.238597 5_2:+68319399 Msa0783980:CDS
ATCATATATTGTTGTTATCT+TGG 0.250127 5_2:+68320750 Msa0783980:three_prime_UTR
ATGCAACAATTGAGTTCTAT+TGG 0.254941 5_2:+68319297 Msa0783980:CDS
GAATTTGGTATTTCAGTTAT+AGG 0.257936 5_2:-68320975 None:intergenic
TTGAAGTGTGTGCATCTTTA+CGG 0.287806 5_2:-68320557 None:intergenic
ACCAACTGTGTATAAGTAAT+AGG 0.302621 5_2:+68317443 Msa0783980:five_prime_UTR
GAAGATTTCATGTGCATCTT+TGG 0.320970 5_2:+68317815 Msa0783980:CDS
GTGATGTTAAGAAATGTAAT+TGG 0.337450 5_2:-68320519 None:intergenic
TATTCAGTGGAAGGTGGGTT+TGG 0.341404 5_2:+68318173 Msa0783980:CDS
TGGTATTCAACACTTATCTT+TGG 0.343420 5_2:+68319438 Msa0783980:CDS
ACACATTTGTTCAAAATAAA+GGG 0.356138 5_2:+68320727 Msa0783980:three_prime_UTR
TGCTGTCTTAATGTTTGTTT+AGG 0.363185 5_2:+68317486 Msa0783980:five_prime_UTR
TATCTTGGATCATGGACTCT+TGG 0.374121 5_2:+68320765 Msa0783980:three_prime_UTR
TCCCTCTTCCCCACCGCAAA+TGG 0.376164 5_2:-68318136 None:intergenic
ATTGTTGTTATCTTGGATCA+TGG 0.380509 5_2:+68320757 Msa0783980:three_prime_UTR
ACACAATCAGCATAGCTTAC+AGG 0.384710 5_2:-68320627 None:intergenic
ATTCAGTGGAAGGTGGGTTT+GGG 0.387148 5_2:+68318174 Msa0783980:CDS
CGGACAATGCTGTTGTTCAT+AGG 0.387335 5_2:+68319345 Msa0783980:CDS
ACGACCTTTGCTTCTTAGAA+TGG 0.393423 5_2:-68317732 None:intergenic
CGAAAAGAATGAAAGCTAGA+AGG 0.399537 5_2:-68317775 None:intergenic
GGCAAATTAATAAAAGTAGA+TGG 0.402717 5_2:-68317344 None:intergenic
CCAATGCTGGTAATCTTTGT+CGG 0.410377 5_2:-68318278 None:intergenic
CTATGAAAAGTATGCTTAGA+TGG 0.410597 5_2:+68319673 Msa0783980:CDS
TGCCATTTGCGGTGGGGAAG+AGG 0.414389 5_2:+68318134 Msa0783980:CDS
TGCAACAATTGAGTTCTATT+GGG 0.419007 5_2:+68319298 Msa0783980:CDS
GGTATTTCAGTTATAGGAAA+GGG 0.419698 5_2:-68320969 None:intergenic
TGTGTTGCCCGTGCGTCGCA+CGG 0.420022 5_2:+68317545 Msa0783980:five_prime_UTR
ATCTTGGATCATGGACTCTT+GGG 0.423135 5_2:+68320766 Msa0783980:three_prime_UTR
CAGTACAGTCGTGATGTTAT+CGG 0.424342 5_2:-68321102 None:intergenic
TATTCAACACTTATCTTTGG+TGG 0.424745 5_2:+68319441 Msa0783980:CDS
TAGGTCTTGCGCCTTCGCTT+TGG 0.427402 5_2:+68317505 Msa0783980:five_prime_UTR
TATATGGCAGGAGTATAGAT+TGG 0.431306 5_2:+68320370 Msa0783980:intron
ACTTATCTTTGGTGGATGAC+TGG 0.435500 5_2:+68319449 Msa0783980:CDS
ATATGGCAGGAGTATAGATT+GGG 0.440954 5_2:+68320371 Msa0783980:intron
TAAATAATAGTGAGTTGAGT+TGG 0.441530 5_2:+68317662 Msa0783980:five_prime_UTR
GCGGTGGGGAAGAGGGAGGA+AGG 0.447569 5_2:+68318142 Msa0783980:CDS
CATCCTCAGGAATGAGTTGA+TGG 0.449717 5_2:-68318514 None:intergenic
ATAGTGAGTTGAGTTGGATT+TGG 0.450733 5_2:+68317668 Msa0783980:five_prime_UTR
TCCATGGATTTAGCATCCTC+AGG 0.455663 5_2:-68318527 None:intergenic
GCTAGAAGGGTGAAAAGGTA+AGG 0.463485 5_2:-68317761 None:intergenic
TGAAAGCTAGAAGGGTGAAA+AGG 0.463624 5_2:-68317766 None:intergenic
TCTGATAGAATTGTAAGAAA+AGG 0.475990 5_2:+68319371 Msa0783980:CDS
TGTGTACATTGGTGTTTACC+TGG 0.477328 5_2:+68320645 Msa0783980:CDS
TGGAAGGTGGGTTTGGGACG+AGG 0.477341 5_2:+68318180 Msa0783980:CDS
GCGACCGTTGTACGAGGAAT+CGG 0.479634 5_2:+68318207 Msa0783980:CDS
GTGTTGCCCGTGCGTCGCAC+GGG 0.480785 5_2:+68317546 Msa0783980:five_prime_UTR
AAAAGTATAATGCAAGTGAT+TGG 0.480921 5_2:+68320471 Msa0783980:CDS
GCCATTTGCGGTGGGGAAGA+GGG 0.482239 5_2:+68318135 Msa0783980:CDS
TGATATATTCAGTGGAAGGT+GGG 0.487169 5_2:+68318168 Msa0783980:CDS
CAATGCTGGTAATCTTTGTC+GGG 0.488343 5_2:-68318277 None:intergenic
TGATTAATCTTTGTTTGCAA+AGG 0.491547 5_2:+68320831 Msa0783980:three_prime_UTR
GGAAAGAGGATGATGTTTGT+TGG 0.493089 5_2:+68318446 Msa0783980:CDS
TCATTGTAACAACTTCCTCC+TGG 0.493394 5_2:-68320402 None:intergenic
GCAGATCAAGGTGCCATTTG+CGG 0.494304 5_2:+68318123 Msa0783980:CDS
GTCAATTGTGGTTGTATGTA+CGG 0.495060 5_2:-68318235 None:intergenic
AGTACAGTCGTGATGTTATC+GGG 0.496058 5_2:-68321101 None:intergenic
TCTTTGGTGGATGACTGGCT+TGG 0.496770 5_2:+68319454 Msa0783980:CDS
GAGTTTGATTCTAGAAGAAA+AGG 0.501756 5_2:-68319323 None:intergenic
AACTGAAGATGCTTATCGTA+TGG 0.502726 5_2:+68319650 Msa0783980:CDS
ATTAATAATTCAACATATTG+GGG 0.506141 5_2:+68320435 Msa0783980:CDS
GTGATATATTCAGTGGAAGG+TGG 0.512281 5_2:+68318167 Msa0783980:CDS
GACAAATTCTTCTCCACACC+TGG 0.515054 5_2:+68317866 Msa0783980:CDS
GAGTGAATCAAAGGTTTCCA+TGG 0.517129 5_2:-68318543 None:intergenic
ACTAGCATGTCACCTTCTCA+TGG 0.524451 5_2:+68319738 Msa0783980:CDS
GCCTATTACTTATACACAGT+TGG 0.525579 5_2:-68317444 None:intergenic
ATAGATTGGGGAGGTGAACC+AGG 0.527383 5_2:+68320384 Msa0783980:CDS
TCCTGAGGATGCTAAATCCA+TGG 0.527655 5_2:+68318526 Msa0783980:CDS
TTCCAATTATCTTGAAGACC+AGG 0.528264 5_2:-68320663 None:intergenic
CTAGAAGGGTGAAAAGGTAA+GGG 0.530481 5_2:-68317760 None:intergenic
AGAATGGAAGAAGGTGAGAA+TGG 0.531203 5_2:-68317716 None:intergenic
CACTCCGATTCCTCGTACAA+CGG 0.532914 5_2:-68318211 None:intergenic
GAAAAGAATGAAAGCTAGAA+GGG 0.532958 5_2:-68317774 None:intergenic
TGTGTAACCCGTGCGACGCA+CGG 0.537678 5_2:-68317553 None:intergenic
ACAAAGATTACCAGCATTGG+AGG 0.541102 5_2:+68318281 Msa0783980:CDS
TTGCTTCTTAGAATGGAAGA+AGG 0.542128 5_2:-68317725 None:intergenic
CTTCAATCTATAAGAAGCAA+TGG 0.542329 5_2:+68320574 Msa0783980:CDS
TGGTATTTCAGTTATAGGAA+AGG 0.542790 5_2:-68320970 None:intergenic
GAAAACAGTGAGTGAATCAA+AGG 0.543530 5_2:-68318552 None:intergenic
TTACTTTACTCTAAAAGACT+TGG 0.544232 5_2:-68317617 None:intergenic
CCGACAAAGATTACCAGCAT+TGG 0.545925 5_2:+68318278 Msa0783980:CDS
GAGGGTGAAGAAGCAGATCA+AGG 0.550519 5_2:+68318111 Msa0783980:CDS
GTGGTTGCCACCTCCAATGC+TGG 0.551099 5_2:-68318291 None:intergenic
TGAAGTAAACAGTGCACCAC+AGG 0.553380 5_2:-68317365 None:intergenic
CGGTGGGGAAGAGGGAGGAA+GGG 0.553994 5_2:+68318143 Msa0783980:CDS
GTGTAACCCGTGCGACGCAC+GGG 0.555815 5_2:-68317552 None:intergenic
ATCAAGGTGCCATTTGCGGT+GGG 0.557278 5_2:+68318127 Msa0783980:CDS
GTGACACTTTCATTTGTACA+AGG 0.563222 5_2:+68320790 Msa0783980:three_prime_UTR
TAGAAGGGTGAAAAGGTAAG+GGG 0.565912 5_2:-68317759 None:intergenic
GATCAAGGTGCCATTTGCGG+TGG 0.568008 5_2:+68318126 Msa0783980:CDS
AAGAATCAAAGAAACGAATG+AGG 0.568461 5_2:+68320875 Msa0783980:three_prime_UTR
AACAATGAACTCACCAGGTG+TGG 0.570501 5_2:-68317879 None:intergenic
GTATTTCAGTTATAGGAAAG+GGG 0.570896 5_2:-68320968 None:intergenic
GTGTGGAGAAGAATTTGTCT+TGG 0.571094 5_2:-68317862 None:intergenic
TTGAAACACTACGTGGAAAG+AGG 0.579791 5_2:+68318432 Msa0783980:CDS
GAAGGGTGTGATATATTCAG+TGG 0.582934 5_2:+68318160 Msa0783980:CDS
TATTTCAGTTATAGGAAAGG+GGG 0.584658 5_2:-68320967 None:intergenic
AAGATTACCAGCATTGGAGG+TGG 0.592214 5_2:+68318284 Msa0783980:CDS
TATACTCACTTTCCATGAGA+AGG 0.592451 5_2:-68319750 None:intergenic
TCTTCCATTCTAAGAAGCAA+AGG 0.595126 5_2:+68317728 Msa0783980:CDS
ATGGAAGAAGGTGAGAATGG+TGG 0.608866 5_2:-68317713 None:intergenic
GTTGGAGACTCTCTCAATCG+TGG 0.612428 5_2:+68318464 Msa0783980:CDS
AAACATGGTAGAAATTGGAA+AGG 0.614486 5_2:+68319404 Msa0783980:CDS
TATGAAAAGTATGCTTAGAT+GGG 0.615716 5_2:+68319674 Msa0783980:CDS
GGATATATGTGATGATAACA+AGG 0.617841 5_2:+68320852 Msa0783980:three_prime_UTR
GGTGTGATATATTCAGTGGA+AGG 0.619090 5_2:+68318164 Msa0783980:CDS
TCAAGGTGCCATTTGCGGTG+GGG 0.620684 5_2:+68318128 Msa0783980:CDS
TATGGCAGGAGTATAGATTG+GGG 0.621719 5_2:+68320372 Msa0783980:intron
AAAGTATGCTTAGATGGGTG+AGG 0.645663 5_2:+68319679 Msa0783980:CDS
TCTCCATCAACTCATTCCTG+AGG 0.645953 5_2:+68318511 Msa0783980:CDS
CATTGGAGGTGGCAACCACA+CGG 0.646522 5_2:+68318295 Msa0783980:CDS
GATTAACAACACCAAAGCGA+AGG 0.649759 5_2:-68317516 None:intergenic
ATTTGCGGTGGGGAAGAGGG+AGG 0.654696 5_2:+68318138 Msa0783980:CDS
GCTATGCTGATTGTGTACAT+TGG 0.671303 5_2:+68320634 Msa0783980:CDS
TCACAACAACGATACTAATG+TGG 0.676019 5_2:-68317413 None:intergenic
AAAGGATCAATAAATAAACA+TGG 0.682166 5_2:+68319389 Msa0783980:CDS
GGCAGGAGTATAGATTGGGG+AGG 0.697427 5_2:+68320375 Msa0783980:intron
TTAGGAAGATCGCAACCGTG+TGG 0.699752 5_2:-68318310 None:intergenic
GGATACGCGACCGTTGTACG+AGG 0.706535 5_2:+68318201 Msa0783980:CDS
GATTGGGGAGGTGAACCAGG+AGG 0.722699 5_2:+68320387 Msa0783980:CDS
AAATATAGCATACAAACACG+CGG 0.759018 5_2:-68317321 None:intergenic
TTGATGCTTGAAACACTACG+TGG 0.805901 5_2:+68318425 Msa0783980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAATTATTACATTAAAG+TGG - chr5_2:68318834-68318853 None:intergenic 10.0%
!! ACAAAAATAATTATATTTAG+TGG - chr5_2:68319167-68319186 None:intergenic 10.0%
!!! TATTATTGATCATTTTAAAT+AGG - chr5_2:68319863-68319882 None:intergenic 10.0%
!!! ATTTAAAATGATCAATAATA+TGG + chr5_2:68319863-68319882 Msa0783980:intron 10.0%
!! TAATATATCAACAAAATATA+TGG + chr5_2:68320354-68320373 Msa0783980:intron 10.0%
!! TATATTAAAATCTTATGAGT+CGG - chr5_2:68318004-68318023 None:intergenic 15.0%
!!! AATATATTATGCCTTTTTTA+TGG + chr5_2:68318043-68318062 Msa0783980:intron 15.0%
!!! TTATTTGATGTTTTTGTATT+TGG + chr5_2:68318067-68318086 Msa0783980:intron 15.0%
!!! TATTTGATGTTTTTGTATTT+GGG + chr5_2:68318068-68318087 Msa0783980:intron 15.0%
!! AAATAAATAAACACTTACTT+AGG - chr5_2:68318331-68318350 None:intergenic 15.0%
!! TTCATAACAATAATTAAGAT+TGG - chr5_2:68318605-68318624 None:intergenic 15.0%
!! TTAATTATTGTTATGAATCA+TGG + chr5_2:68318608-68318627 Msa0783980:intron 15.0%
!! AATTATTTATAAAAGTGAGT+TGG + chr5_2:68318762-68318781 Msa0783980:intron 15.0%
!! AGAATAAATTATAATACTTG+AGG + chr5_2:68318956-68318975 Msa0783980:intron 15.0%
!! TGAAAATCAACAATAAAAAA+TGG - chr5_2:68319257-68319276 None:intergenic 15.0%
!! CAAATAATAAAAATGGAAAA+GGG - chr5_2:68319544-68319563 None:intergenic 15.0%
!! TCAAATAATAAAAATGGAAA+AGG - chr5_2:68319545-68319564 None:intergenic 15.0%
!!! AATTGTAGAGATTTTTTAAA+GGG - chr5_2:68319961-68319980 None:intergenic 15.0%
!!! AAATTGTAGAGATTTTTTAA+AGG - chr5_2:68319962-68319981 None:intergenic 15.0%
!!! TTAAAAAATCTCTACAATTT+TGG + chr5_2:68319962-68319981 Msa0783980:intron 15.0%
!!! TAAAAAATCTCTACAATTTT+GGG + chr5_2:68319963-68319982 Msa0783980:intron 15.0%
!! TGATTAATAATTCAACATAT+TGG + chr5_2:68320433-68320452 Msa0783980:CDS 15.0%
!! GATTAATAATTCAACATATT+GGG + chr5_2:68320434-68320453 Msa0783980:CDS 15.0%
!! ATTAATAATTCAACATATTG+GGG + chr5_2:68320435-68320454 Msa0783980:CDS 15.0%
!! ATATTAAAATCTTATGAGTC+GGG - chr5_2:68318003-68318022 None:intergenic 20.0%
!! CATCAAATAAACCATAAAAA+AGG - chr5_2:68318057-68318076 None:intergenic 20.0%
!!! ATTTGATGTTTTTGTATTTG+GGG + chr5_2:68318069-68318088 Msa0783980:intron 20.0%
!! TTGATGAAAGAACTAAATAA+TGG + chr5_2:68318727-68318746 Msa0783980:intron 20.0%
!!! ACTAATCTCTTAAATTTTGT+GGG + chr5_2:68319029-68319048 Msa0783980:intron 20.0%
!! TAGAGGAATTAACTAATATA+AGG + chr5_2:68319202-68319221 Msa0783980:intron 20.0%
!!! AAATGGTACATATTTTTATG+TGG - chr5_2:68319240-68319259 None:intergenic 20.0%
!! AAAGGATCAATAAATAAACA+TGG + chr5_2:68319389-68319408 Msa0783980:CDS 20.0%
!! TAAATAAACATGGTAGAAAT+TGG + chr5_2:68319399-68319418 Msa0783980:CDS 20.0%
!! AAGTCTAGAAAATTTGAAAA+GGG - chr5_2:68319589-68319608 None:intergenic 20.0%
!!! AAAACCAAACTATACAATTT+TGG + chr5_2:68319933-68319952 Msa0783980:intron 20.0%
!!! ATTGTAGAGATTTTTTAAAG+GGG - chr5_2:68319960-68319979 None:intergenic 20.0%
!!! AAAAAATCTCTACAATTTTG+GGG + chr5_2:68319964-68319983 Msa0783980:intron 20.0%
!! TAAGCAAAACTTTATTCTTT+AGG + chr5_2:68320048-68320067 Msa0783980:intron 20.0%
!!! ATAAGCAAAAATTCACATTT+TGG - chr5_2:68320275-68320294 None:intergenic 20.0%
!! TACACATTTGTTCAAAATAA+AGG + chr5_2:68320726-68320745 Msa0783980:three_prime_UTR 20.0%
!! ACACATTTGTTCAAAATAAA+GGG + chr5_2:68320727-68320746 Msa0783980:three_prime_UTR 20.0%
!!! ATCATATATTGTTGTTATCT+TGG + chr5_2:68320750-68320769 Msa0783980:three_prime_UTR 20.0%
!!! ATACCAAATTCCAAATTTTT+TGG + chr5_2:68320987-68321006 Msa0783980:three_prime_UTR 20.0%
!! ACAAAAAACTCCAAAAAATT+TGG - chr5_2:68321000-68321019 None:intergenic 20.0%
! GGCAAATTAATAAAAGTAGA+TGG - chr5_2:68317347-68317366 None:intergenic 25.0%
!!! TACTTTTATTAATTTGCCTG+TGG + chr5_2:68317349-68317368 Msa0783980:five_prime_UTR 25.0%
!! TTACTTTACTCTAAAAGACT+TGG - chr5_2:68317620-68317639 None:intergenic 25.0%
!! TAAATAATAGTGAGTTGAGT+TGG + chr5_2:68317662-68317681 Msa0783980:five_prime_UTR 25.0%
!!! TTTTGCATCAAAAAGTATAG+AGG + chr5_2:68317938-68317957 Msa0783980:intron 25.0%
!!! TTTGATGTTTTTGTATTTGG+GGG + chr5_2:68318070-68318089 Msa0783980:intron 25.0%
!! GACTAATCTCTTAAATTTTG+TGG + chr5_2:68319028-68319047 Msa0783980:intron 25.0%
!! TCTAAAATATATCTCAACCT+TGG - chr5_2:68319105-68319124 None:intergenic 25.0%
!! TGATTTTCATGTGTTTAATC+AGG + chr5_2:68319268-68319287 Msa0783980:intron 25.0%
!!! TTTTCTTCTAGAATCAAACT+CGG + chr5_2:68319325-68319344 Msa0783980:CDS 25.0%
! TCTGATAGAATTGTAAGAAA+AGG + chr5_2:68319371-68319390 Msa0783980:CDS 25.0%
! CAAGTCTAGAAAATTTGAAA+AGG - chr5_2:68319590-68319609 None:intergenic 25.0%
!! CTTTTCAAATTTTCTAGACT+TGG + chr5_2:68319588-68319607 Msa0783980:intron 25.0%
!! TATGAAAAGTATGCTTAGAT+GGG + chr5_2:68319674-68319693 Msa0783980:CDS 25.0%
! CATTCAATAAATGATGTATG+TGG + chr5_2:68320133-68320152 Msa0783980:intron 25.0%
! CATTCAATAAATGATGTATG+TGG - chr5_2:68320133-68320152 None:intergenic 25.0%
!! AAATTTCTTACATTTGAGAC+CGG + chr5_2:68320207-68320226 Msa0783980:intron 25.0%
! CATTTAATAAGTGATGTATG+TGG - chr5_2:68320250-68320269 None:intergenic 25.0%
! GATATATTAGAACTTAGAAG+TGG - chr5_2:68320343-68320362 None:intergenic 25.0%
! ATATCAACAAAATATATGGC+AGG + chr5_2:68320358-68320377 Msa0783980:intron 25.0%
!! AAAAGTATAATGCAAGTGAT+TGG + chr5_2:68320471-68320490 Msa0783980:CDS 25.0%
! GTGATGTTAAGAAATGTAAT+TGG - chr5_2:68320522-68320541 None:intergenic 25.0%
!! CTAATTGCTCTTTTGTTAAA+GGG - chr5_2:68320602-68320621 None:intergenic 25.0%
!! ACAAATGTGTACAATTTTCA+AGG - chr5_2:68320717-68320736 None:intergenic 25.0%
!! TGATTAATCTTTGTTTGCAA+AGG + chr5_2:68320831-68320850 Msa0783980:three_prime_UTR 25.0%
! GAATTTGGTATTTCAGTTAT+AGG - chr5_2:68320978-68320997 None:intergenic 25.0%
!! ACTCCAAAAAATTTGGAATT+TGG - chr5_2:68320993-68321012 None:intergenic 25.0%
!! TTATCGGGATAAAAATTTTC+TGG - chr5_2:68321089-68321108 None:intergenic 25.0%
AAATATAGCATACAAACACG+CGG - chr5_2:68317324-68317343 None:intergenic 30.0%
ACCAACTGTGTATAAGTAAT+AGG + chr5_2:68317443-68317462 Msa0783980:five_prime_UTR 30.0%
TGCTGTCTTAATGTTTGTTT+AGG + chr5_2:68317486-68317505 Msa0783980:five_prime_UTR 30.0%
GAAAAGAATGAAAGCTAGAA+GGG - chr5_2:68317777-68317796 None:intergenic 30.0%
! CTTTTCGTTACTATTCTCTA+TGG + chr5_2:68317791-68317810 Msa0783980:CDS 30.0%
!! TTGATGTTTTTGTATTTGGG+GGG + chr5_2:68318071-68318090 Msa0783980:intron 30.0%
GGTGAATTATGAAAAAGAGA+GGG + chr5_2:68318093-68318112 Msa0783980:intron 30.0%
!! AATTGACTTGCCAAAAACAT+GGG + chr5_2:68318251-68318270 Msa0783980:CDS 30.0%
TAAAGTGGATCAATTAGAGT+TGG - chr5_2:68318819-68318838 None:intergenic 30.0%
! TAAATTTTGTGGGACTCAAA+TGG + chr5_2:68319039-68319058 Msa0783980:intron 30.0%
ATGCAACAATTGAGTTCTAT+TGG + chr5_2:68319297-68319316 Msa0783980:CDS 30.0%
TGCAACAATTGAGTTCTATT+GGG + chr5_2:68319298-68319317 Msa0783980:CDS 30.0%
! GAGTTTGATTCTAGAAGAAA+AGG - chr5_2:68319326-68319345 None:intergenic 30.0%
AAACATGGTAGAAATTGGAA+AGG + chr5_2:68319404-68319423 Msa0783980:CDS 30.0%
TGGTATTCAACACTTATCTT+TGG + chr5_2:68319438-68319457 Msa0783980:CDS 30.0%
TATTCAACACTTATCTTTGG+TGG + chr5_2:68319441-68319460 Msa0783980:CDS 30.0%
CTTGTTTGAATAGAAAAGAG+GGG - chr5_2:68319499-68319518 None:intergenic 30.0%
GCTTGTTTGAATAGAAAAGA+GGG - chr5_2:68319500-68319519 None:intergenic 30.0%
TGCTTGTTTGAATAGAAAAG+AGG - chr5_2:68319501-68319520 None:intergenic 30.0%
! CTATGAAAAGTATGCTTAGA+TGG + chr5_2:68319673-68319692 Msa0783980:CDS 30.0%
!!! AAGAAGACTCTAGTTTTCTT+TGG - chr5_2:68319717-68319736 None:intergenic 30.0%
ATACTTATCTTCTCTTTCTC+TGG + chr5_2:68319770-68319789 Msa0783980:intron 30.0%
! ACATGCTAGTTGTTAATTTG+AGG - chr5_2:68320008-68320027 None:intergenic 30.0%
TCAATAAATTATACTCCCTC+CGG + chr5_2:68320076-68320095 Msa0783980:intron 30.0%
! AAGTTTCTTACATTTGAGAC+CGG - chr5_2:68320098-68320117 None:intergenic 30.0%
TTGCTTATAATTGTGAGCAT+TGG + chr5_2:68320287-68320306 Msa0783980:intron 30.0%
TGCTTATAATTGTGAGCATT+GGG + chr5_2:68320288-68320307 Msa0783980:intron 30.0%
CTTCAATCTATAAGAAGCAA+TGG + chr5_2:68320574-68320593 Msa0783980:CDS 30.0%
! GCTAATTGCTCTTTTGTTAA+AGG - chr5_2:68320603-68320622 None:intergenic 30.0%
! ATTGTTGTTATCTTGGATCA+TGG + chr5_2:68320757-68320776 Msa0783980:three_prime_UTR 30.0%
! CAAGGAAAAAAGTATAGCTA+CGG + chr5_2:68320808-68320827 Msa0783980:three_prime_UTR 30.0%
GGATATATGTGATGATAACA+AGG + chr5_2:68320852-68320871 Msa0783980:three_prime_UTR 30.0%
AAGAATCAAAGAAACGAATG+AGG + chr5_2:68320875-68320894 Msa0783980:three_prime_UTR 30.0%
TATTTCAGTTATAGGAAAGG+GGG - chr5_2:68320970-68320989 None:intergenic 30.0%
GTATTTCAGTTATAGGAAAG+GGG - chr5_2:68320971-68320990 None:intergenic 30.0%
GGTATTTCAGTTATAGGAAA+GGG - chr5_2:68320972-68320991 None:intergenic 30.0%
TGGTATTTCAGTTATAGGAA+AGG - chr5_2:68320973-68320992 None:intergenic 30.0%
TCACAACAACGATACTAATG+TGG - chr5_2:68317416-68317435 None:intergenic 35.0%
GCCTATTACTTATACACAGT+TGG - chr5_2:68317447-68317466 None:intergenic 35.0%
!! ATAGTGAGTTGAGTTGGATT+TGG + chr5_2:68317668-68317687 Msa0783980:five_prime_UTR 35.0%
TTGCTTCTTAGAATGGAAGA+AGG - chr5_2:68317728-68317747 None:intergenic 35.0%
! TCTTCCATTCTAAGAAGCAA+AGG + chr5_2:68317728-68317747 Msa0783980:CDS 35.0%
CGAAAAGAATGAAAGCTAGA+AGG - chr5_2:68317778-68317797 None:intergenic 35.0%
GAAGATTTCATGTGCATCTT+TGG + chr5_2:68317815-68317834 Msa0783980:CDS 35.0%
! TTTGAAACAATGAACTCACC+AGG - chr5_2:68317887-68317906 None:intergenic 35.0%
!! TGATGTTTTTGTATTTGGGG+GGG + chr5_2:68318072-68318091 Msa0783980:intron 35.0%
GGGTGAATTATGAAAAAGAG+AGG + chr5_2:68318092-68318111 Msa0783980:intron 35.0%
TGATATATTCAGTGGAAGGT+GGG + chr5_2:68318168-68318187 Msa0783980:CDS 35.0%
GTCAATTGTGGTTGTATGTA+CGG - chr5_2:68318238-68318257 None:intergenic 35.0%
!!! TGTTTTTGGCAAGTCAATTG+TGG - chr5_2:68318250-68318269 None:intergenic 35.0%
!! CAATTGACTTGCCAAAAACA+TGG + chr5_2:68318250-68318269 Msa0783980:CDS 35.0%
GAAAACAGTGAGTGAATCAA+AGG - chr5_2:68318555-68318574 None:intergenic 35.0%
GTTATGAATCATGGAATCGT+AGG + chr5_2:68318617-68318636 Msa0783980:intron 35.0%
ATTAGAGTTGGCTAATGGTT+AGG - chr5_2:68318807-68318826 None:intergenic 35.0%
GATCAATTAGAGTTGGCTAA+TGG - chr5_2:68318812-68318831 None:intergenic 35.0%
GTGTGTATATTTGACACTAG+AGG + chr5_2:68319185-68319204 Msa0783980:intron 35.0%
!!! TTGGAAAGGTGTTGACATTT+TGG + chr5_2:68319418-68319437 Msa0783980:CDS 35.0%
AACTGAAGATGCTTATCGTA+TGG + chr5_2:68319650-68319669 Msa0783980:CDS 35.0%
TATACTCACTTTCCATGAGA+AGG - chr5_2:68319753-68319772 None:intergenic 35.0%
! CTCATTTTCACACACTACAA+TGG + chr5_2:68319799-68319818 Msa0783980:intron 35.0%
AAATAGGCTAATGTGACTTG+AGG - chr5_2:68319847-68319866 None:intergenic 35.0%
GGGTCCAAAATTGTATAGTT+TGG - chr5_2:68319940-68319959 None:intergenic 35.0%
GGTCTATAATATACTTCCTC+CGG - chr5_2:68320229-68320248 None:intergenic 35.0%
! TATATGGCAGGAGTATAGAT+TGG + chr5_2:68320370-68320389 Msa0783980:intron 35.0%
! ATATGGCAGGAGTATAGATT+GGG + chr5_2:68320371-68320390 Msa0783980:intron 35.0%
TTGAAGTGTGTGCATCTTTA+CGG - chr5_2:68320560-68320579 None:intergenic 35.0%
! TACCTGGTCTTCAAGATAAT+TGG + chr5_2:68320661-68320680 Msa0783980:CDS 35.0%
TTCCAATTATCTTGAAGACC+AGG - chr5_2:68320666-68320685 None:intergenic 35.0%
GTGACACTTTCATTTGTACA+AGG + chr5_2:68320790-68320809 Msa0783980:three_prime_UTR 35.0%
GATTAACAACACCAAAGCGA+AGG - chr5_2:68317519-68317538 None:intergenic 40.0%
AGAATGGAAGAAGGTGAGAA+TGG - chr5_2:68317719-68317738 None:intergenic 40.0%
ACGACCTTTGCTTCTTAGAA+TGG - chr5_2:68317735-68317754 None:intergenic 40.0%
TAGAAGGGTGAAAAGGTAAG+GGG - chr5_2:68317762-68317781 None:intergenic 40.0%
CTAGAAGGGTGAAAAGGTAA+GGG - chr5_2:68317763-68317782 None:intergenic 40.0%
TGAAAGCTAGAAGGGTGAAA+AGG - chr5_2:68317769-68317788 None:intergenic 40.0%
GTGTGGAGAAGAATTTGTCT+TGG - chr5_2:68317865-68317884 None:intergenic 40.0%
! GAAGGGTGTGATATATTCAG+TGG + chr5_2:68318160-68318179 Msa0783980:CDS 40.0%
GGTGTGATATATTCAGTGGA+AGG + chr5_2:68318164-68318183 Msa0783980:CDS 40.0%
GTGATATATTCAGTGGAAGG+TGG + chr5_2:68318167-68318186 Msa0783980:CDS 40.0%
CAATGCTGGTAATCTTTGTC+GGG - chr5_2:68318280-68318299 None:intergenic 40.0%
CCAATGCTGGTAATCTTTGT+CGG - chr5_2:68318281-68318300 None:intergenic 40.0%
! ACAAAGATTACCAGCATTGG+AGG + chr5_2:68318281-68318300 Msa0783980:CDS 40.0%
TTGATGCTTGAAACACTACG+TGG + chr5_2:68318425-68318444 Msa0783980:CDS 40.0%
TTGAAACACTACGTGGAAAG+AGG + chr5_2:68318432-68318451 Msa0783980:CDS 40.0%
GGAAAGAGGATGATGTTTGT+TGG + chr5_2:68318446-68318465 Msa0783980:CDS 40.0%
GAGTGAATCAAAGGTTTCCA+TGG - chr5_2:68318546-68318565 None:intergenic 40.0%
! ACTCACTGTTTTCACAGCAA+AGG + chr5_2:68318562-68318581 Msa0783980:CDS 40.0%
! TTTTGTGGGACTCAAATGGA+CGG + chr5_2:68319043-68319062 Msa0783980:intron 40.0%
GCAACGACGTTAAAACTCTT+TGG - chr5_2:68319078-68319097 None:intergenic 40.0%
! ACTTATCTTTGGTGGATGAC+TGG + chr5_2:68319449-68319468 Msa0783980:CDS 40.0%
AAAGTATGCTTAGATGGGTG+AGG + chr5_2:68319679-68319698 Msa0783980:CDS 40.0%
CAACTAGCATGTACACTCTA+TGG + chr5_2:68320016-68320035 Msa0783980:intron 40.0%
! TTCTTACATTTGAGACCGGA+GGG - chr5_2:68320211-68320230 None:intergenic 40.0%
! TTTCTTACATTTGAGACCGG+AGG - chr5_2:68320210-68320229 None:intergenic 40.0%
! TTTCTTACATTTGAGACCGG+AGG + chr5_2:68320210-68320229 Msa0783980:intron 40.0%
! TATGGCAGGAGTATAGATTG+GGG + chr5_2:68320372-68320391 Msa0783980:intron 40.0%
TCATTGTAACAACTTCCTCC+TGG - chr5_2:68320405-68320424 None:intergenic 40.0%
ACACAATCAGCATAGCTTAC+AGG - chr5_2:68320630-68320649 None:intergenic 40.0%
! GCTATGCTGATTGTGTACAT+TGG + chr5_2:68320634-68320653 Msa0783980:CDS 40.0%
! TGTGTACATTGGTGTTTACC+TGG + chr5_2:68320645-68320664 Msa0783980:CDS 40.0%
TATCTTGGATCATGGACTCT+TGG + chr5_2:68320765-68320784 Msa0783980:three_prime_UTR 40.0%
ATCTTGGATCATGGACTCTT+GGG + chr5_2:68320766-68320785 Msa0783980:three_prime_UTR 40.0%
TGAAGTAAACAGTGCACCAC+AGG - chr5_2:68317368-68317387 None:intergenic 45.0%
ATGGAAGAAGGTGAGAATGG+TGG - chr5_2:68317716-68317735 None:intergenic 45.0%
GCTAGAAGGGTGAAAAGGTA+AGG - chr5_2:68317764-68317783 None:intergenic 45.0%
GACAAATTCTTCTCCACACC+TGG + chr5_2:68317866-68317885 Msa0783980:CDS 45.0%
AACAATGAACTCACCAGGTG+TGG - chr5_2:68317882-68317901 None:intergenic 45.0%
GCGAGTTCGAACTCTCTTAT+GGG - chr5_2:68317979-68317998 None:intergenic 45.0%
! TATTCAGTGGAAGGTGGGTT+TGG + chr5_2:68318173-68318192 Msa0783980:CDS 45.0%
! ATTCAGTGGAAGGTGGGTTT+GGG + chr5_2:68318174-68318193 Msa0783980:CDS 45.0%
CCGACAAAGATTACCAGCAT+TGG + chr5_2:68318278-68318297 Msa0783980:CDS 45.0%
! AAGATTACCAGCATTGGAGG+TGG + chr5_2:68318284-68318303 Msa0783980:CDS 45.0%
TCTCCATCAACTCATTCCTG+AGG + chr5_2:68318511-68318530 Msa0783980:CDS 45.0%
! CATCCTCAGGAATGAGTTGA+TGG - chr5_2:68318517-68318536 None:intergenic 45.0%
TCCTGAGGATGCTAAATCCA+TGG + chr5_2:68318526-68318545 Msa0783980:CDS 45.0%
TCCATGGATTTAGCATCCTC+AGG - chr5_2:68318530-68318549 None:intergenic 45.0%
TGGCTAATGGTTAGGTAGCT+AGG - chr5_2:68318799-68318818 None:intergenic 45.0%
TTAACGTCGTTGCATGTCCA+AGG + chr5_2:68319085-68319104 Msa0783980:intron 45.0%
CGGACAATGCTGTTGTTCAT+AGG + chr5_2:68319345-68319364 Msa0783980:CDS 45.0%
ACTAGCATGTCACCTTCTCA+TGG + chr5_2:68319738-68319757 Msa0783980:CDS 45.0%
!!! TAATTTTCAAATAATAAAAA+TGG - chr5_2:68319551-68319570 None:intergenic 5.0%
CGCGAGTTCGAACTCTCTTA+TGG - chr5_2:68317980-68317999 None:intergenic 50.0%
GAGGGTGAAGAAGCAGATCA+AGG + chr5_2:68318111-68318130 Msa0783980:CDS 50.0%
!! GCAGATCAAGGTGCCATTTG+CGG + chr5_2:68318123-68318142 Msa0783980:CDS 50.0%
!! ATCAAGGTGCCATTTGCGGT+GGG + chr5_2:68318127-68318146 Msa0783980:CDS 50.0%
CACTCCGATTCCTCGTACAA+CGG - chr5_2:68318214-68318233 None:intergenic 50.0%
! TGTCGGGTCTCCCATGTTTT+TGG - chr5_2:68318264-68318283 None:intergenic 50.0%
TTAGGAAGATCGCAACCGTG+TGG - chr5_2:68318313-68318332 None:intergenic 50.0%
GTTGGAGACTCTCTCAATCG+TGG + chr5_2:68318464-68318483 Msa0783980:CDS 50.0%
! TCTTTGGTGGATGACTGGCT+TGG + chr5_2:68319454-68319473 Msa0783980:CDS 50.0%
ATAGATTGGGGAGGTGAACC+AGG + chr5_2:68320384-68320403 Msa0783980:CDS 50.0%
TAGGTCTTGCGCCTTCGCTT+TGG + chr5_2:68317505-68317524 Msa0783980:five_prime_UTR 55.0%
!! GATCAAGGTGCCATTTGCGG+TGG + chr5_2:68318126-68318145 Msa0783980:CDS 55.0%
!! TCAAGGTGCCATTTGCGGTG+GGG + chr5_2:68318128-68318147 Msa0783980:CDS 55.0%
GCGACCGTTGTACGAGGAAT+CGG + chr5_2:68318207-68318226 Msa0783980:CDS 55.0%
CATTGGAGGTGGCAACCACA+CGG + chr5_2:68318295-68318314 Msa0783980:CDS 55.0%
! GGCAGGAGTATAGATTGGGG+AGG + chr5_2:68320375-68320394 Msa0783980:intron 55.0%
TGTGTAACCCGTGCGACGCA+CGG - chr5_2:68317556-68317575 None:intergenic 60.0%
! TGCCATTTGCGGTGGGGAAG+AGG + chr5_2:68318134-68318153 Msa0783980:CDS 60.0%
GCCATTTGCGGTGGGGAAGA+GGG + chr5_2:68318135-68318154 Msa0783980:CDS 60.0%
TCCCTCTTCCCCACCGCAAA+TGG - chr5_2:68318139-68318158 None:intergenic 60.0%
ATTTGCGGTGGGGAAGAGGG+AGG + chr5_2:68318138-68318157 Msa0783980:CDS 60.0%
! TGGAAGGTGGGTTTGGGACG+AGG + chr5_2:68318180-68318199 Msa0783980:CDS 60.0%
GGATACGCGACCGTTGTACG+AGG + chr5_2:68318201-68318220 Msa0783980:CDS 60.0%
GTGGTTGCCACCTCCAATGC+TGG - chr5_2:68318294-68318313 None:intergenic 60.0%
GATTGGGGAGGTGAACCAGG+AGG + chr5_2:68320387-68320406 Msa0783980:CDS 60.0%
TGTGTTGCCCGTGCGTCGCA+CGG + chr5_2:68317545-68317564 Msa0783980:five_prime_UTR 65.0%
GTGTAACCCGTGCGACGCAC+GGG - chr5_2:68317555-68317574 None:intergenic 65.0%
CGGTGGGGAAGAGGGAGGAA+GGG + chr5_2:68318143-68318162 Msa0783980:CDS 65.0%
GTGTTGCCCGTGCGTCGCAC+GGG + chr5_2:68317546-68317565 Msa0783980:five_prime_UTR 70.0%
GCGGTGGGGAAGAGGGAGGA+AGG + chr5_2:68318142-68318161 Msa0783980:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 68317319 68321119 68317319 ID=Msa0783980;Name=Msa0783980
chr5_2 mRNA 68317319 68321119 68317319 ID=Msa0783980-mRNA-1;Parent=Msa0783980;Name=Msa0783980-mRNA-1;_AED=0.02;_eAED=0.02;_QI=379|1|1|1|1|1|6|400|427
chr5_2 exon 68317319 68317887 68317319 ID=Msa0783980-mRNA-1:exon:20457;Parent=Msa0783980-mRNA-1
chr5_2 exon 68318110 68318332 68318110 ID=Msa0783980-mRNA-1:exon:20458;Parent=Msa0783980-mRNA-1
chr5_2 exon 68318412 68318583 68318412 ID=Msa0783980-mRNA-1:exon:20459;Parent=Msa0783980-mRNA-1
chr5_2 exon 68319290 68319489 68319290 ID=Msa0783980-mRNA-1:exon:20460;Parent=Msa0783980-mRNA-1
chr5_2 exon 68319605 68319763 68319605 ID=Msa0783980-mRNA-1:exon:20461;Parent=Msa0783980-mRNA-1
chr5_2 exon 68320380 68321119 68320380 ID=Msa0783980-mRNA-1:exon:20462;Parent=Msa0783980-mRNA-1
chr5_2 five_prime_UTR 68317319 68317697 68317319 ID=Msa0783980-mRNA-1:five_prime_utr;Parent=Msa0783980-mRNA-1
chr5_2 CDS 68317698 68317887 68317698 ID=Msa0783980-mRNA-1:cds;Parent=Msa0783980-mRNA-1
chr5_2 CDS 68318110 68318332 68318110 ID=Msa0783980-mRNA-1:cds;Parent=Msa0783980-mRNA-1
chr5_2 CDS 68318412 68318583 68318412 ID=Msa0783980-mRNA-1:cds;Parent=Msa0783980-mRNA-1
chr5_2 CDS 68319290 68319489 68319290 ID=Msa0783980-mRNA-1:cds;Parent=Msa0783980-mRNA-1
chr5_2 CDS 68319605 68319763 68319605 ID=Msa0783980-mRNA-1:cds;Parent=Msa0783980-mRNA-1
chr5_2 CDS 68320380 68320719 68320380 ID=Msa0783980-mRNA-1:cds;Parent=Msa0783980-mRNA-1
chr5_2 three_prime_UTR 68320720 68321119 68320720 ID=Msa0783980-mRNA-1:three_prime_utr;Parent=Msa0783980-mRNA-1
Gene Sequence

>Msa0783980

ATGCAAATAATGAAGCCACCATTCTCACCTTCTTCCATTCTAAGAAGCAAAGGTCGTTTCTCCCCTTACCTTTTCACCCTTCTAGCTTTCATTCTTTTCGTTACTATTCTCTATGGTGAAGATTTCATGTGCATCTTTGGTGAACAACTCTATAACTACTCTAACCAAGACAAATTCTTCTCCACACCTGAGAGGGTGAAGAAGCAGATCAAGGTGCCATTTGCGGTGGGGAAGAGGGAGGAAGGGTGTGATATATTCAGTGGAAGGTGGGTTTGGGACGAGGATACGCGACCGTTGTACGAGGAATCGGAGTGTCCGTACATACAACCACAATTGACTTGCCAAAAACATGGGAGACCCGACAAAGATTACCAGCATTGGAGGTGGCAACCACACGGTTGCGATCTTCCTAAATTCAATGCTAGCTTGATGCTTGAAACACTACGTGGAAAGAGGATGATGTTTGTTGGAGACTCTCTCAATCGTGGTCAATATGTTTCTTTTGTATGTCTTCTCCATCAACTCATTCCTGAGGATGCTAAATCCATGGAAACCTTTGATTCACTCACTGTTTTCACAGCAAAGGAATACAATGCAACAATTGAGTTCTATTGGGCACCTTTTCTTCTAGAATCAAACTCGGACAATGCTGTTGTTCATAGGATATCTGATAGAATTGTAAGAAAAGGATCAATAAATAAACATGGTAGAAATTGGAAAGGTGTTGACATTTTGGTATTCAACACTTATCTTTGGTGGATGACTGGCTTGGAGATGAAAATTTTACTTGGATCTTTTGATGATGAAGTAAAAGAGATTGTCACAATTTCAACTGAAGATGCTTATCGTATGGCTATGAAAAGTATGCTTAGATGGGTGAGGTTGAACATGAATCCAAAGAAAACTAGAGTCTTCTTCACTAGCATGTCACCTTCTCATGGAAAGAGTATAGATTGGGGAGGTGAACCAGGAGGAAGTTGTTACAATGAAACAACTTTGATTAATAATTCAACATATTGGGGTTCTGATTGTAGAAAAAGTATAATGCAAGTGATTGGTGAAGTGTTAAGCAAAACAAAAGTTCCAATTACATTTCTTAACATCACACAACTTTCAAGTTACCGTAAAGATGCACACACTTCAATCTATAAGAAGCAATGGAGCCCTTTAACAAAAGAGCAATTAGCTAATCCTGTAAGCTATGCTGATTGTGTACATTGGTGTTTACCTGGTCTTCAAGATAATTGGAATGAACTTTTGTTTGCTAAGTTGTTTTATCCTTGA
Protein sequence

>Msa0783980

MQIMKPPFSPSSILRSKGRFSPYLFTLLAFILFVTILYGEDFMCIFGEQLYNYSNQDKFFSTPERVKKQIKVPFAVGKREEGCDIFSGRWVWDEDTRPLYEESECPYIQPQLTCQKHGRPDKDYQHWRWQPHGCDLPKFNASLMLETLRGKRMMFVGDSLNRGQYVSFVCLLHQLIPEDAKSMETFDSLTVFTAKEYNATIEFYWAPFLLESNSDNAVVHRISDRIVRKGSINKHGRNWKGVDILVFNTYLWWMTGLEMKILLGSFDDEVKEIVTISTEDAYRMAMKSMLRWVRLNMNPKKTRVFFTSMSPSHGKSIDWGGEPGGSCYNETTLINNSTYWGSDCRKSIMQVIGEVLSKTKVPITFLNITQLSSYRKDAHTSIYKKQWSPLTKEQLANPVSYADCVHWCLPGLQDNWNELLFAKLFYP*