AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0071880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0071880 MtrunA17_Chr1g0186981 89.333 375 28 3 55 429 309 671 0.0 687
Msa0071880 MtrunA17_Chr1g0187001 63.342 371 116 8 55 423 286 638 9.38e-166 480
Msa0071880 MtrunA17_Chr1g0186991 54.521 376 150 6 55 426 314 672 8.70e-145 428
Msa0071880 MtrunA17_Chr1g0165791 49.865 371 171 6 50 420 322 677 2.52e-123 374
Msa0071880 MtrunA17_Chr1g0186841 35.356 379 211 11 51 426 321 668 4.43e-60 207
Msa0071880 MtrunA17_Chr1g0186851 31.250 384 230 12 45 426 315 666 1.37e-50 181
Msa0071880 MtrunA17_Chr1g0187041 31.662 379 219 13 51 423 321 665 5.83e-50 179
Msa0071880 MtrunA17_Chr1g0186911 31.217 378 226 11 45 420 215 560 9.19e-50 177
Msa0071880 MtrunA17_Chr1g0186861 31.217 378 226 11 45 420 317 662 1.31e-49 178
Msa0071880 MtrunA17_Chr7g0226571 28.030 396 233 16 55 422 341 712 5.37e-31 125
Msa0071880 MtrunA17_Chr8g0381301 26.303 403 243 17 47 419 324 702 9.63e-22 98.2
Msa0071880 MtrunA17_Chr3g0116601 25.641 390 238 16 55 419 342 704 4.13e-21 96.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0071880 AT3G01680.1 25.954 393 247 15 57 420 351 728 3.24e-25 108
Msa0071880 AT3G01670.2 23.573 403 236 14 55 419 476 844 1.63e-21 97.8
Msa0071880 AT3G01670.1 23.573 403 236 14 55 419 452 820 1.68e-21 97.8

Find 101 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAACCGTGTTCCAAGTTTC+TGG 0.231135 1_2:-44188038 Msa0071880:CDS
TTATGTAATAGCCCTTTAAA+TGG 0.231499 1_2:-44187465 Msa0071880:three_prime_UTR
ATCACACACTACATAGTATT+TGG 0.239931 1_2:+44187490 None:intergenic
TCATTGTAGCCTATTAATTC+TGG 0.252536 1_2:+44188753 None:intergenic
TTTGCATGAACCGCCCTTTC+GGG 0.255519 1_2:+44189702 None:intergenic
GCATAGAAGCATTCCCATTT+AGG 0.255874 1_2:-44188650 Msa0071880:CDS
CCAACTCAAGTGTGAAATCT+TGG 0.257534 1_2:+44188136 None:intergenic
TAAAGAGTATTATGAGATTA+AGG 0.261690 1_2:-44187779 Msa0071880:CDS
GACTGTGGATTGCGAGATTC+AGG 0.273949 1_2:-44187974 Msa0071880:CDS
GGACATAACATTAAACTTCT+TGG 0.288405 1_2:-44187889 Msa0071880:CDS
AGTTGAAGTGGAGCTGGCTT+TGG 0.302256 1_2:-44188605 Msa0071880:CDS
GGGTTGAACACTGGGATAAT+AGG 0.303798 1_2:+44188723 None:intergenic
AGCCTTACCTGGCTGTTTCC+AGG 0.309456 1_2:+44188365 None:intergenic
CTTTGGTTGAGTTTCAGAAT+TGG 0.315143 1_2:-44187843 Msa0071880:CDS
ACACGTCCACACATAGGATT+TGG 0.331012 1_2:+44187673 None:intergenic
AATCCGAAAGAACCAATAAA+AGG 0.336470 1_2:-44188930 Msa0071880:CDS
AATCAAGCACCAAGGTTGTT+TGG 0.341815 1_2:+44187604 None:intergenic
CAGAAACTTGGAACACGGTT+AGG 0.346769 1_2:+44188039 None:intergenic
ATAAAAGATCCAGAATTAAT+AGG 0.348273 1_2:-44188762 Msa0071880:CDS
GACAGATACATCTTTATCTA+TGG 0.353153 1_2:-44188180 Msa0071880:CDS
CAAGTCCATAGCATCTTCAT+TGG 0.391630 1_2:+44188686 None:intergenic
TTTATTCTCGCCCATTTAAA+GGG 0.400310 1_2:+44187454 None:intergenic
ACTTCTTGGTCACGGTGAAC+CGG 0.408117 1_2:-44187875 Msa0071880:CDS
CCAAGATTTCACACTTGAGT+TGG 0.414566 1_2:-44188136 Msa0071880:CDS
GCAAATCACCATCACCCCTT+GGG 0.418407 1_2:-44189642 Msa0071880:CDS
AAGAGCAACTCCTGGTATAC+AGG 0.418681 1_2:-44188571 Msa0071880:intron
ATGGAGGTACCAACAAGAAA+TGG 0.425568 1_2:-44188161 Msa0071880:CDS
ACCTATAGTTCAAATGTTAT+AGG 0.425924 1_2:-44187709 Msa0071880:CDS
TTCCTTTAGGGTTGAACACT+GGG 0.427856 1_2:+44188715 None:intergenic
TCATCCCACTTGTTCACAAT+GGG 0.429462 1_2:+44188873 None:intergenic
ATCTTGGATCCATTTCTTGT+TGG 0.434085 1_2:+44188152 None:intergenic
GTTGAAGTGGAGCTGGCTTT+GGG 0.443006 1_2:-44188604 Msa0071880:CDS
AAAAGACAAGTAACTACATC+TGG 0.443181 1_2:-44189664 Msa0071880:CDS
TCTATACCCATCCAGAAACT+TGG 0.447489 1_2:+44188027 None:intergenic
ACCTATAACATTTGAACTAT+AGG 0.448924 1_2:+44187708 None:intergenic
TATGTAATAGCCCTTTAAAT+GGG 0.450660 1_2:-44187464 Msa0071880:three_prime_UTR
AAGGTCACGGGTTCAAGTCC+TGG 0.451424 1_2:-44188383 Msa0071880:CDS
TATTATAACGTCTGCACGCT+TGG 0.452880 1_2:+44188089 None:intergenic
TCCTCAAGTTGAAGTGGAGC+TGG 0.462888 1_2:-44188611 Msa0071880:CDS
TTTCACACTTGAGTTGGAAA+AGG 0.472700 1_2:-44188130 Msa0071880:CDS
GGCAAATCACCATCACCCCT+TGG 0.475637 1_2:-44189643 Msa0071880:CDS
GACAAAGTGTTGGAGAAAGC+AGG 0.481405 1_2:-44187817 Msa0071880:CDS
CACGTCCACACATAGGATTT+GGG 0.484874 1_2:+44187674 None:intergenic
CATTGAAGAGTGGCATCAAA+TGG 0.486152 1_2:-44188827 Msa0071880:CDS
TGAACCGGCTTATCAAACTT+TGG 0.489587 1_2:-44187860 Msa0071880:CDS
CAAAACCAATGAAGATGCTA+TGG 0.494017 1_2:-44188691 Msa0071880:CDS
TCTCATCTTGAATGCTATCA+AGG 0.496200 1_2:+44188991 None:intergenic
ATTCCTTTAGGGTTGAACAC+TGG 0.496497 1_2:+44188714 None:intergenic
ATCCCAGTGTTCAACCCTAA+AGG 0.500863 1_2:-44188717 Msa0071880:CDS
TCAACCAAAGTTTGATAAGC+CGG 0.505369 1_2:+44187856 None:intergenic
TTGAGTTGGAAAAGGTCAAA+AGG 0.509353 1_2:-44188122 Msa0071880:CDS
CCGTGTTCCAAGTTTCTGGA+TGG 0.510982 1_2:-44188034 Msa0071880:CDS
TCCTATGTGTGGACGTGTGA+TGG 0.515222 1_2:-44187668 Msa0071880:CDS
TATAATAGAGAATTATCAAG+TGG 0.519025 1_2:-44188073 Msa0071880:CDS
ACAACAAAAGCAAGTTAACT+AGG 0.529735 1_2:+44187562 None:intergenic
AGAAACTTGGAACACGGTTA+GGG 0.531778 1_2:+44188040 None:intergenic
GCTGAGATTGTACGCAACTC+AGG 0.533611 1_2:-44189754 Msa0071880:CDS
GATGAGCCGAAAACCCGAAA+GGG 0.538889 1_2:-44189715 Msa0071880:CDS
TTCAAGTCCTGGAAACAGCC+AGG 0.550923 1_2:-44188372 Msa0071880:intron
AACATTAAACTTCTTGGTCA+CGG 0.554079 1_2:-44187883 Msa0071880:CDS
GTACTCTCCTCAAGTTGAAG+TGG 0.556679 1_2:-44188617 Msa0071880:CDS
GACAGTTGCAGATGCCCCAA+GGG 0.557066 1_2:+44189627 None:intergenic
CGTGTTCCAAGTTTCTGGAT+GGG 0.560177 1_2:-44188033 Msa0071880:CDS
TGATGTGATTCAGGTGAAAG+TGG 0.562041 1_2:-44188202 Msa0071880:intron
CGTGATGAGCCAAACAACCT+TGG 0.566875 1_2:-44187613 Msa0071880:CDS
GAATTGGAAAGACAAAGTGT+TGG 0.576068 1_2:-44187827 Msa0071880:CDS
ACAAAGTGTTGGAGAAAGCA+GGG 0.576612 1_2:-44187816 Msa0071880:CDS
AAGAAGACTTCAAGATTCTG+TGG 0.578055 1_2:-44188899 Msa0071880:CDS
ATCATCCCACTTGTTCACAA+TGG 0.581732 1_2:+44188872 None:intergenic
GCAGATGCCCCAAGGGGTGA+TGG 0.582871 1_2:+44189634 None:intergenic
CTTAGAATAAACCATCCTTG+TGG 0.583984 1_2:+44187916 None:intergenic
GGATGGTTTATTCTAAGCAA+AGG 0.584169 1_2:-44187910 Msa0071880:CDS
GCCAGCTCCACTTCAACTTG+AGG 0.587791 1_2:+44188610 None:intergenic
GTCATCAAAAGAGCAACTCC+TGG 0.591771 1_2:-44188579 Msa0071880:CDS
CGATGAGCCGAAAACCCGAA+AGG 0.596023 1_2:-44189716 Msa0071880:CDS
TTCCCATTTAGGAAAAGTGA+TGG 0.598584 1_2:-44188639 Msa0071880:CDS
TGACAGTTGCAGATGCCCCA+AGG 0.599734 1_2:+44189626 None:intergenic
TGGCATCAAATGGTATGTAG+TGG 0.600710 1_2:-44188817 Msa0071880:CDS
TCATGTGACTGAAAGGTCAC+GGG 0.602542 1_2:-44188395 Msa0071880:intron
ATCCTTGTGGATCACGTCTG+AGG 0.611100 1_2:+44187929 None:intergenic
CAAGAAGCATCAAGAGACTG+TGG 0.617134 1_2:-44187989 Msa0071880:CDS
GGAATGCTTCTATGCCCCAT+TGG 0.617439 1_2:+44188658 None:intergenic
ATAATAGAGAATTATCAAGT+GGG 0.621818 1_2:-44188072 Msa0071880:CDS
TCATGCCCAAATCCTATGTG+TGG 0.622369 1_2:-44187679 Msa0071880:CDS
AATGGGCGAGAATAAAAGAG+TGG 0.625239 1_2:-44187447 Msa0071880:three_prime_UTR
CAAATCACCATCACCCCTTG+GGG 0.625821 1_2:-44189641 Msa0071880:CDS
AATTTCAAAACATTGAAGAG+TGG 0.627666 1_2:-44188837 Msa0071880:CDS
TGCCTCAGACGTGATCCACA+AGG 0.631014 1_2:-44187931 Msa0071880:CDS
GAGCCGAAAACCCGAAAGGG+CGG 0.644443 1_2:-44189712 Msa0071880:CDS
CCATCCAGAAACTTGGAACA+CGG 0.647174 1_2:+44188034 None:intergenic
GGATCCCCATTGTGAACAAG+TGG 0.649592 1_2:-44188878 Msa0071880:CDS
AGATACATCTTTATCTATGG+AGG 0.650594 1_2:-44188177 Msa0071880:CDS
TCCATCACACGTCCACACAT+AGG 0.651294 1_2:+44187667 None:intergenic
TCAGACGTGATCCACAAGGA+TGG 0.655320 1_2:-44187927 Msa0071880:CDS
GGTTGTTTGGCTCATCACGA+TGG 0.661653 1_2:+44187617 None:intergenic
GTCACTTGAATCAAGCACCA+AGG 0.680192 1_2:+44187596 None:intergenic
TATGTGTGGACGTGTGATGG+AGG 0.691965 1_2:-44187665 Msa0071880:CDS
TCAACATTAAGAACTTCACA+TGG 0.707918 1_2:+44187733 None:intergenic
CATCCCACTTGTTCACAATG+GGG 0.719744 1_2:+44188874 None:intergenic
ACAGTTGCAGATGCCCCAAG+GGG 0.733932 1_2:+44189628 None:intergenic
GATCCCCATTGTGAACAAGT+GGG 0.735559 1_2:-44188877 Msa0071880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTGAATAATTTTGATATA+TGG - chr1_2:44188598-44188617 Msa0071880:CDS 10.0%
!! TATAAAAATTATAAACAATG+TGG - chr1_2:44188637-44188656 Msa0071880:CDS 10.0%
!!! ATTTGAATAATTTTGATATA+TGG - chr1_2:44188598-44188617 Msa0071880:CDS 10.0%
!! TATAAAAATTATAAACAATG+TGG - chr1_2:44188637-44188656 Msa0071880:CDS 10.0%
!!! TCATTTTACTTCTTTTTAAT+TGG + chr1_2:44188665-44188684 None:intergenic 15.0%
!!! TCATTTTACTTCTTTTTAAT+TGG + chr1_2:44188665-44188684 None:intergenic 15.0%
!! AAAATTTCTATGAAATGTAG+CGG - chr1_2:44187569-44187588 Msa0071880:three_prime_UTR 20.0%
!!! AAAATGGTAATTTTATTGGT+TGG + chr1_2:44187615-44187634 None:intergenic 20.0%
!!! TTGGAAAATGGTAATTTTAT+TGG + chr1_2:44187619-44187638 None:intergenic 20.0%
!! TTCATTTATGTAATATTGCA+GGG - chr1_2:44188074-44188093 Msa0071880:CDS 20.0%
!! ATAAAAGATCCAGAATTAAT+AGG - chr1_2:44188371-44188390 Msa0071880:intron 20.0%
!! TCAAAATTATTCAAATTGTG+AGG + chr1_2:44188594-44188613 None:intergenic 20.0%
!!! ATGATTATTTTCTGATCAAT+TGG - chr1_2:44188681-44188700 Msa0071880:CDS 20.0%
!! AGACATTATAACCAATTAAA+GGG + chr1_2:44188866-44188885 None:intergenic 20.0%
!! TATAATAGAGAATTATCAAG+TGG - chr1_2:44189060-44189079 Msa0071880:intron 20.0%
!! ATAATAGAGAATTATCAAGT+GGG - chr1_2:44189061-44189080 Msa0071880:intron 20.0%
!!! TAAAGAGTATTATGAGATTA+AGG - chr1_2:44189354-44189373 Msa0071880:intron 20.0%
!! AAAATTTCTATGAAATGTAG+CGG - chr1_2:44187569-44187588 Msa0071880:three_prime_UTR 20.0%
!!! AAAATGGTAATTTTATTGGT+TGG + chr1_2:44187615-44187634 None:intergenic 20.0%
!!! TTGGAAAATGGTAATTTTAT+TGG + chr1_2:44187619-44187638 None:intergenic 20.0%
!! TTCATTTATGTAATATTGCA+GGG - chr1_2:44188074-44188093 Msa0071880:CDS 20.0%
!! ATAAAAGATCCAGAATTAAT+AGG - chr1_2:44188371-44188390 Msa0071880:intron 20.0%
!! TCAAAATTATTCAAATTGTG+AGG + chr1_2:44188594-44188613 None:intergenic 20.0%
!!! ATGATTATTTTCTGATCAAT+TGG - chr1_2:44188681-44188700 Msa0071880:CDS 20.0%
!! AGACATTATAACCAATTAAA+GGG + chr1_2:44188866-44188885 None:intergenic 20.0%
!! TATAATAGAGAATTATCAAG+TGG - chr1_2:44189060-44189079 Msa0071880:intron 20.0%
!! ATAATAGAGAATTATCAAGT+GGG - chr1_2:44189061-44189080 Msa0071880:intron 20.0%
!!! TAAAGAGTATTATGAGATTA+AGG - chr1_2:44189354-44189373 Msa0071880:intron 20.0%
! TAGAGTTTCAAACAATAGAA+AGG + chr1_2:44187703-44187722 None:intergenic 25.0%
!!! ATAAAGCATTGAAAGTAGAA+AGG + chr1_2:44187729-44187748 None:intergenic 25.0%
! ATTAACATTATCAATCGGAA+AGG + chr1_2:44187763-44187782 None:intergenic 25.0%
! CAGACATTAACATTATCAAT+CGG + chr1_2:44187768-44187787 None:intergenic 25.0%
! GTTCATTTATGTAATATTGC+AGG - chr1_2:44188073-44188092 Msa0071880:CDS 25.0%
!!! AAACCTTTTATTGGTTCTTT+CGG + chr1_2:44188209-44188228 None:intergenic 25.0%
!! TCTTTCTTGAAACCTTTTAT+TGG + chr1_2:44188218-44188237 None:intergenic 25.0%
!!! ATGTTTTGAAATTTTCTCTC+TGG + chr1_2:44188289-44188308 None:intergenic 25.0%
! AATTTCAAAACATTGAAGAG+TGG - chr1_2:44188296-44188315 Msa0071880:intron 25.0%
! ATCAATTGGTTATACTATCT+TGG - chr1_2:44188695-44188714 Msa0071880:CDS 25.0%
! CAGACATTATAACCAATTAA+AGG + chr1_2:44188867-44188886 None:intergenic 25.0%
! ACCTATAGTTCAAATGTTAT+AGG - chr1_2:44189424-44189443 Msa0071880:intron 25.0%
! ACCTATAACATTTGAACTAT+AGG + chr1_2:44189428-44189447 None:intergenic 25.0%
! TTATGTAATAGCCCTTTAAA+TGG - chr1_2:44189668-44189687 Msa0071880:CDS 25.0%
! TATGTAATAGCCCTTTAAAT+GGG - chr1_2:44189669-44189688 Msa0071880:CDS 25.0%
! TAGAGTTTCAAACAATAGAA+AGG + chr1_2:44187703-44187722 None:intergenic 25.0%
!!! ATAAAGCATTGAAAGTAGAA+AGG + chr1_2:44187729-44187748 None:intergenic 25.0%
! ATTAACATTATCAATCGGAA+AGG + chr1_2:44187763-44187782 None:intergenic 25.0%
! CAGACATTAACATTATCAAT+CGG + chr1_2:44187768-44187787 None:intergenic 25.0%
! GTTCATTTATGTAATATTGC+AGG - chr1_2:44188073-44188092 Msa0071880:CDS 25.0%
!!! AAACCTTTTATTGGTTCTTT+CGG + chr1_2:44188209-44188228 None:intergenic 25.0%
!! TCTTTCTTGAAACCTTTTAT+TGG + chr1_2:44188218-44188237 None:intergenic 25.0%
!!! ATGTTTTGAAATTTTCTCTC+TGG + chr1_2:44188289-44188308 None:intergenic 25.0%
! AATTTCAAAACATTGAAGAG+TGG - chr1_2:44188296-44188315 Msa0071880:intron 25.0%
! ATCAATTGGTTATACTATCT+TGG - chr1_2:44188695-44188714 Msa0071880:CDS 25.0%
! CAGACATTATAACCAATTAA+AGG + chr1_2:44188867-44188886 None:intergenic 25.0%
! ACCTATAGTTCAAATGTTAT+AGG - chr1_2:44189424-44189443 Msa0071880:intron 25.0%
! ACCTATAACATTTGAACTAT+AGG + chr1_2:44189428-44189447 None:intergenic 25.0%
! TTATGTAATAGCCCTTTAAA+TGG - chr1_2:44189668-44189687 Msa0071880:CDS 25.0%
! TATGTAATAGCCCTTTAAAT+GGG - chr1_2:44189669-44189688 Msa0071880:CDS 25.0%
AAAAGACAAGTAACTACATC+TGG - chr1_2:44187469-44187488 Msa0071880:three_prime_UTR 30.0%
GATTTACAAAGCTTGGAAAA+TGG + chr1_2:44187631-44187650 None:intergenic 30.0%
AATCCGAAAGAACCAATAAA+AGG - chr1_2:44188203-44188222 Msa0071880:intron 30.0%
! TCTTTTATTATCTTGAGACC+TGG + chr1_2:44188359-44188378 None:intergenic 30.0%
TCATTGTAGCCTATTAATTC+TGG + chr1_2:44188383-44188402 None:intergenic 30.0%
!!! CATTGGTTTTGATTCCTTTA+GGG + chr1_2:44188433-44188452 None:intergenic 30.0%
!!! TCATTGGTTTTGATTCCTTT+AGG + chr1_2:44188434-44188453 None:intergenic 30.0%
! TATGGACTTGATTTTCCAAT+GGG - chr1_2:44188460-44188479 Msa0071880:intron 30.0%
!! TACCATCACTTTTCCTAAAT+GGG + chr1_2:44188499-44188518 None:intergenic 30.0%
TCCATTTAATGATGTGATTC+AGG - chr1_2:44188922-44188941 Msa0071880:CDS 30.0%
ACCTGAATCACATCATTAAA+TGG + chr1_2:44188926-44188945 None:intergenic 30.0%
GACAGATACATCTTTATCTA+TGG - chr1_2:44188953-44188972 Msa0071880:CDS 30.0%
AGATACATCTTTATCTATGG+AGG - chr1_2:44188956-44188975 Msa0071880:CDS 30.0%
GGACATAACATTAAACTTCT+TGG - chr1_2:44189244-44189263 Msa0071880:intron 30.0%
AACATTAAACTTCTTGGTCA+CGG - chr1_2:44189250-44189269 Msa0071880:intron 30.0%
TCAACATTAAGAACTTCACA+TGG + chr1_2:44189403-44189422 None:intergenic 30.0%
ACAACAAAAGCAAGTTAACT+AGG + chr1_2:44189574-44189593 None:intergenic 30.0%
ATCACACACTACATAGTATT+TGG + chr1_2:44189646-44189665 None:intergenic 30.0%
TTTATTCTCGCCCATTTAAA+GGG + chr1_2:44189682-44189701 None:intergenic 30.0%
! TTTTATTCTCGCCCATTTAA+AGG + chr1_2:44189683-44189702 None:intergenic 30.0%
AAAAGACAAGTAACTACATC+TGG - chr1_2:44187469-44187488 Msa0071880:three_prime_UTR 30.0%
GATTTACAAAGCTTGGAAAA+TGG + chr1_2:44187631-44187650 None:intergenic 30.0%
AATCCGAAAGAACCAATAAA+AGG - chr1_2:44188203-44188222 Msa0071880:intron 30.0%
! TCTTTTATTATCTTGAGACC+TGG + chr1_2:44188359-44188378 None:intergenic 30.0%
TCATTGTAGCCTATTAATTC+TGG + chr1_2:44188383-44188402 None:intergenic 30.0%
!!! CATTGGTTTTGATTCCTTTA+GGG + chr1_2:44188433-44188452 None:intergenic 30.0%
!!! TCATTGGTTTTGATTCCTTT+AGG + chr1_2:44188434-44188453 None:intergenic 30.0%
! TATGGACTTGATTTTCCAAT+GGG - chr1_2:44188460-44188479 Msa0071880:intron 30.0%
!! TACCATCACTTTTCCTAAAT+GGG + chr1_2:44188499-44188518 None:intergenic 30.0%
TCCATTTAATGATGTGATTC+AGG - chr1_2:44188922-44188941 Msa0071880:CDS 30.0%
ACCTGAATCACATCATTAAA+TGG + chr1_2:44188926-44188945 None:intergenic 30.0%
GACAGATACATCTTTATCTA+TGG - chr1_2:44188953-44188972 Msa0071880:CDS 30.0%
AGATACATCTTTATCTATGG+AGG - chr1_2:44188956-44188975 Msa0071880:CDS 30.0%
GGACATAACATTAAACTTCT+TGG - chr1_2:44189244-44189263 Msa0071880:intron 30.0%
AACATTAAACTTCTTGGTCA+CGG - chr1_2:44189250-44189269 Msa0071880:intron 30.0%
TCAACATTAAGAACTTCACA+TGG + chr1_2:44189403-44189422 None:intergenic 30.0%
ACAACAAAAGCAAGTTAACT+AGG + chr1_2:44189574-44189593 None:intergenic 30.0%
ATCACACACTACATAGTATT+TGG + chr1_2:44189646-44189665 None:intergenic 30.0%
TTTATTCTCGCCCATTTAAA+GGG + chr1_2:44189682-44189701 None:intergenic 30.0%
! TTTTATTCTCGCCCATTTAA+AGG + chr1_2:44189683-44189702 None:intergenic 30.0%
TCAATGATCATCTTCATCAG+AGG - chr1_2:44187527-44187546 Msa0071880:three_prime_UTR 35.0%
! CTCAGGTTTGCTTTCAAAAT+AGG + chr1_2:44187828-44187847 None:intergenic 35.0%
TCTCATCTTGAATGCTATCA+AGG + chr1_2:44188145-44188164 None:intergenic 35.0%
AAGAAGACTTCAAGATTCTG+TGG - chr1_2:44188234-44188253 Msa0071880:intron 35.0%
CAAAACCAATGAAGATGCTA+TGG - chr1_2:44188442-44188461 Msa0071880:intron 35.0%
! CTATGGACTTGATTTTCCAA+TGG - chr1_2:44188459-44188478 Msa0071880:intron 35.0%
! ATGGACTTGATTTTCCAATG+GGG - chr1_2:44188461-44188480 Msa0071880:intron 35.0%
TTCCCATTTAGGAAAAGTGA+TGG - chr1_2:44188494-44188513 Msa0071880:intron 35.0%
!! GTACCATCACTTTTCCTAAA+TGG + chr1_2:44188500-44188519 None:intergenic 35.0%
TTATACTATCTTGGCGCAAT+TGG - chr1_2:44188704-44188723 Msa0071880:CDS 35.0%
TAACCAATTAAAGGGCAATC+TGG + chr1_2:44188858-44188877 None:intergenic 35.0%
ATCTTGGATCCATTTCTTGT+TGG + chr1_2:44188984-44189003 None:intergenic 35.0%
!! TTTCACACTTGAGTTGGAAA+AGG - chr1_2:44189003-44189022 Msa0071880:CDS 35.0%
!! TTGAGTTGGAAAAGGTCAAA+AGG - chr1_2:44189011-44189030 Msa0071880:CDS 35.0%
CTTAGAATAAACCATCCTTG+TGG + chr1_2:44189220-44189239 None:intergenic 35.0%
GGATGGTTTATTCTAAGCAA+AGG - chr1_2:44189223-44189242 Msa0071880:intron 35.0%
TCAACCAAAGTTTGATAAGC+CGG + chr1_2:44189280-44189299 None:intergenic 35.0%
CTTTGGTTGAGTTTCAGAAT+TGG - chr1_2:44189290-44189309 Msa0071880:intron 35.0%
GAATTGGAAAGACAAAGTGT+TGG - chr1_2:44189306-44189325 Msa0071880:intron 35.0%
TCAATGATCATCTTCATCAG+AGG - chr1_2:44187527-44187546 Msa0071880:three_prime_UTR 35.0%
! CTCAGGTTTGCTTTCAAAAT+AGG + chr1_2:44187828-44187847 None:intergenic 35.0%
TCTCATCTTGAATGCTATCA+AGG + chr1_2:44188145-44188164 None:intergenic 35.0%
AAGAAGACTTCAAGATTCTG+TGG - chr1_2:44188234-44188253 Msa0071880:intron 35.0%
CAAAACCAATGAAGATGCTA+TGG - chr1_2:44188442-44188461 Msa0071880:intron 35.0%
! CTATGGACTTGATTTTCCAA+TGG - chr1_2:44188459-44188478 Msa0071880:intron 35.0%
! ATGGACTTGATTTTCCAATG+GGG - chr1_2:44188461-44188480 Msa0071880:intron 35.0%
TTCCCATTTAGGAAAAGTGA+TGG - chr1_2:44188494-44188513 Msa0071880:intron 35.0%
!! GTACCATCACTTTTCCTAAA+TGG + chr1_2:44188500-44188519 None:intergenic 35.0%
TTATACTATCTTGGCGCAAT+TGG - chr1_2:44188704-44188723 Msa0071880:CDS 35.0%
TAACCAATTAAAGGGCAATC+TGG + chr1_2:44188858-44188877 None:intergenic 35.0%
ATCTTGGATCCATTTCTTGT+TGG + chr1_2:44188984-44189003 None:intergenic 35.0%
!! TTTCACACTTGAGTTGGAAA+AGG - chr1_2:44189003-44189022 Msa0071880:CDS 35.0%
!! TTGAGTTGGAAAAGGTCAAA+AGG - chr1_2:44189011-44189030 Msa0071880:CDS 35.0%
CTTAGAATAAACCATCCTTG+TGG + chr1_2:44189220-44189239 None:intergenic 35.0%
GGATGGTTTATTCTAAGCAA+AGG - chr1_2:44189223-44189242 Msa0071880:intron 35.0%
TCAACCAAAGTTTGATAAGC+CGG + chr1_2:44189280-44189299 None:intergenic 35.0%
CTTTGGTTGAGTTTCAGAAT+TGG - chr1_2:44189290-44189309 Msa0071880:intron 35.0%
GAATTGGAAAGACAAAGTGT+TGG - chr1_2:44189306-44189325 Msa0071880:intron 35.0%
CTTCACGGATTTACAAAGCT+TGG + chr1_2:44187638-44187657 None:intergenic 40.0%
TCATCCCACTTGTTCACAAT+GGG + chr1_2:44188263-44188282 None:intergenic 40.0%
ATCATCCCACTTGTTCACAA+TGG + chr1_2:44188264-44188283 None:intergenic 40.0%
CATTGAAGAGTGGCATCAAA+TGG - chr1_2:44188306-44188325 Msa0071880:intron 40.0%
TGGCATCAAATGGTATGTAG+TGG - chr1_2:44188316-44188335 Msa0071880:intron 40.0%
! GAGTACTTTTCTGAGTTACC+AGG - chr1_2:44188338-44188357 Msa0071880:intron 40.0%
!! TTCCTTTAGGGTTGAACACT+GGG + chr1_2:44188421-44188440 None:intergenic 40.0%
!! ATTCCTTTAGGGTTGAACAC+TGG + chr1_2:44188422-44188441 None:intergenic 40.0%
CAAGTCCATAGCATCTTCAT+TGG + chr1_2:44188450-44188469 None:intergenic 40.0%
!! GCATAGAAGCATTCCCATTT+AGG - chr1_2:44188483-44188502 Msa0071880:intron 40.0%
! GAGGTTTTTACCTGTATACC+AGG + chr1_2:44188575-44188594 None:intergenic 40.0%
GTTGATGTCATGTGACTGAA+AGG - chr1_2:44188731-44188750 Msa0071880:CDS 40.0%
GCTGCATACAATACACCAAA+TGG - chr1_2:44188788-44188807 Msa0071880:CDS 40.0%
CTAAAACTTCAGCATACGCA+GGG + chr1_2:44188831-44188850 None:intergenic 40.0%
ACTAAAACTTCAGCATACGC+AGG + chr1_2:44188832-44188851 None:intergenic 40.0%
ACACCAGATTGCCCTTTAAT+TGG - chr1_2:44188852-44188871 Msa0071880:CDS 40.0%
TGATGTGATTCAGGTGAAAG+TGG - chr1_2:44188931-44188950 Msa0071880:CDS 40.0%
!! ATGGAGGTACCAACAAGAAA+TGG - chr1_2:44188972-44188991 Msa0071880:CDS 40.0%
CCAACTCAAGTGTGAAATCT+TGG + chr1_2:44189000-44189019 None:intergenic 40.0%
CCAAGATTTCACACTTGAGT+TGG - chr1_2:44188997-44189016 Msa0071880:CDS 40.0%
TATTATAACGTCTGCACGCT+TGG + chr1_2:44189047-44189066 None:intergenic 40.0%
AGAAACTTGGAACACGGTTA+GGG + chr1_2:44189096-44189115 None:intergenic 40.0%
TCTATACCCATCCAGAAACT+TGG + chr1_2:44189109-44189128 None:intergenic 40.0%
! TGAACCGGCTTATCAAACTT+TGG - chr1_2:44189273-44189292 Msa0071880:intron 40.0%
!! ACAAAGTGTTGGAGAAAGCA+GGG - chr1_2:44189317-44189336 Msa0071880:intron 40.0%
AATCAAGCACCAAGGTTGTT+TGG + chr1_2:44189532-44189551 None:intergenic 40.0%
AATGGGCGAGAATAAAAGAG+TGG - chr1_2:44189686-44189705 Msa0071880:CDS 40.0%
CTTCACGGATTTACAAAGCT+TGG + chr1_2:44187638-44187657 None:intergenic 40.0%
TCATCCCACTTGTTCACAAT+GGG + chr1_2:44188263-44188282 None:intergenic 40.0%
ATCATCCCACTTGTTCACAA+TGG + chr1_2:44188264-44188283 None:intergenic 40.0%
CATTGAAGAGTGGCATCAAA+TGG - chr1_2:44188306-44188325 Msa0071880:intron 40.0%
TGGCATCAAATGGTATGTAG+TGG - chr1_2:44188316-44188335 Msa0071880:intron 40.0%
! GAGTACTTTTCTGAGTTACC+AGG - chr1_2:44188338-44188357 Msa0071880:intron 40.0%
!! TTCCTTTAGGGTTGAACACT+GGG + chr1_2:44188421-44188440 None:intergenic 40.0%
!! ATTCCTTTAGGGTTGAACAC+TGG + chr1_2:44188422-44188441 None:intergenic 40.0%
CAAGTCCATAGCATCTTCAT+TGG + chr1_2:44188450-44188469 None:intergenic 40.0%
!! GCATAGAAGCATTCCCATTT+AGG - chr1_2:44188483-44188502 Msa0071880:intron 40.0%
! GAGGTTTTTACCTGTATACC+AGG + chr1_2:44188575-44188594 None:intergenic 40.0%
GTTGATGTCATGTGACTGAA+AGG - chr1_2:44188731-44188750 Msa0071880:CDS 40.0%
GCTGCATACAATACACCAAA+TGG - chr1_2:44188788-44188807 Msa0071880:CDS 40.0%
CTAAAACTTCAGCATACGCA+GGG + chr1_2:44188831-44188850 None:intergenic 40.0%
ACTAAAACTTCAGCATACGC+AGG + chr1_2:44188832-44188851 None:intergenic 40.0%
ACACCAGATTGCCCTTTAAT+TGG - chr1_2:44188852-44188871 Msa0071880:CDS 40.0%
TGATGTGATTCAGGTGAAAG+TGG - chr1_2:44188931-44188950 Msa0071880:CDS 40.0%
!! ATGGAGGTACCAACAAGAAA+TGG - chr1_2:44188972-44188991 Msa0071880:CDS 40.0%
CCAACTCAAGTGTGAAATCT+TGG + chr1_2:44189000-44189019 None:intergenic 40.0%
CCAAGATTTCACACTTGAGT+TGG - chr1_2:44188997-44189016 Msa0071880:CDS 40.0%
TATTATAACGTCTGCACGCT+TGG + chr1_2:44189047-44189066 None:intergenic 40.0%
AGAAACTTGGAACACGGTTA+GGG + chr1_2:44189096-44189115 None:intergenic 40.0%
TCTATACCCATCCAGAAACT+TGG + chr1_2:44189109-44189128 None:intergenic 40.0%
! TGAACCGGCTTATCAAACTT+TGG - chr1_2:44189273-44189292 Msa0071880:intron 40.0%
!! ACAAAGTGTTGGAGAAAGCA+GGG - chr1_2:44189317-44189336 Msa0071880:intron 40.0%
AATCAAGCACCAAGGTTGTT+TGG + chr1_2:44189532-44189551 None:intergenic 40.0%
AATGGGCGAGAATAAAAGAG+TGG - chr1_2:44189686-44189705 Msa0071880:CDS 40.0%
! TTTTGCATGAACCGCCCTTT+CGG + chr1_2:44187435-44187454 None:intergenic 45.0%
AATCCGTGAAGTCATGCCTT+TGG - chr1_2:44187647-44187666 Msa0071880:CDS 45.0%
TGAAAGCAAACCTGAGCAAC+AGG - chr1_2:44187832-44187851 Msa0071880:CDS 45.0%
GAAAGCAAACCTGAGCAACA+GGG - chr1_2:44187833-44187852 Msa0071880:CDS 45.0%
TGAGGTCTAGCGCAAATGAT+TGG + chr1_2:44187983-44188002 None:intergenic 45.0%
TAATGCATGTTGCACCACTG+AGG + chr1_2:44188001-44188020 None:intergenic 45.0%
GATCCCCATTGTGAACAAGT+GGG - chr1_2:44188256-44188275 Msa0071880:intron 45.0%
CATCCCACTTGTTCACAATG+GGG + chr1_2:44188262-44188281 None:intergenic 45.0%
GGGTTGAACACTGGGATAAT+AGG + chr1_2:44188413-44188432 None:intergenic 45.0%
ATCCCAGTGTTCAACCCTAA+AGG - chr1_2:44188416-44188435 Msa0071880:intron 45.0%
!! GTACTCTCCTCAAGTTGAAG+TGG - chr1_2:44188516-44188535 Msa0071880:intron 45.0%
GTCATCAAAAGAGCAACTCC+TGG - chr1_2:44188554-44188573 Msa0071880:intron 45.0%
AAGAGCAACTCCTGGTATAC+AGG - chr1_2:44188562-44188581 Msa0071880:intron 45.0%
GTCATGTGACTGAAAGGTCA+CGG - chr1_2:44188737-44188756 Msa0071880:CDS 45.0%
TCATGTGACTGAAAGGTCAC+GGG - chr1_2:44188738-44188757 Msa0071880:CDS 45.0%
GTATTGTATGCAGCCTTACC+TGG + chr1_2:44188782-44188801 None:intergenic 45.0%
CAGAAACTTGGAACACGGTT+AGG + chr1_2:44189097-44189116 None:intergenic 45.0%
CTAACCGTGTTCCAAGTTTC+TGG - chr1_2:44189095-44189114 Msa0071880:intron 45.0%
CCATCCAGAAACTTGGAACA+CGG + chr1_2:44189102-44189121 None:intergenic 45.0%
! CGTGTTCCAAGTTTCTGGAT+GGG - chr1_2:44189100-44189119 Msa0071880:intron 45.0%
!! CAAGAAGCATCAAGAGACTG+TGG - chr1_2:44189144-44189163 Msa0071880:intron 45.0%
!! GACAAAGTGTTGGAGAAAGC+AGG - chr1_2:44189316-44189335 Msa0071880:intron 45.0%
TCATGCCCAAATCCTATGTG+TGG - chr1_2:44189454-44189473 Msa0071880:intron 45.0%
CACGTCCACACATAGGATTT+GGG + chr1_2:44189462-44189481 None:intergenic 45.0%
ACACGTCCACACATAGGATT+TGG + chr1_2:44189463-44189482 None:intergenic 45.0%
GTCACTTGAATCAAGCACCA+AGG + chr1_2:44189540-44189559 None:intergenic 45.0%
! TTTTGCATGAACCGCCCTTT+CGG + chr1_2:44187435-44187454 None:intergenic 45.0%
AATCCGTGAAGTCATGCCTT+TGG - chr1_2:44187647-44187666 Msa0071880:CDS 45.0%
TGAAAGCAAACCTGAGCAAC+AGG - chr1_2:44187832-44187851 Msa0071880:CDS 45.0%
GAAAGCAAACCTGAGCAACA+GGG - chr1_2:44187833-44187852 Msa0071880:CDS 45.0%
TGAGGTCTAGCGCAAATGAT+TGG + chr1_2:44187983-44188002 None:intergenic 45.0%
TAATGCATGTTGCACCACTG+AGG + chr1_2:44188001-44188020 None:intergenic 45.0%
GATCCCCATTGTGAACAAGT+GGG - chr1_2:44188256-44188275 Msa0071880:intron 45.0%
CATCCCACTTGTTCACAATG+GGG + chr1_2:44188262-44188281 None:intergenic 45.0%
GGGTTGAACACTGGGATAAT+AGG + chr1_2:44188413-44188432 None:intergenic 45.0%
ATCCCAGTGTTCAACCCTAA+AGG - chr1_2:44188416-44188435 Msa0071880:intron 45.0%
!! GTACTCTCCTCAAGTTGAAG+TGG - chr1_2:44188516-44188535 Msa0071880:intron 45.0%
GTCATCAAAAGAGCAACTCC+TGG - chr1_2:44188554-44188573 Msa0071880:intron 45.0%
AAGAGCAACTCCTGGTATAC+AGG - chr1_2:44188562-44188581 Msa0071880:intron 45.0%
GTCATGTGACTGAAAGGTCA+CGG - chr1_2:44188737-44188756 Msa0071880:CDS 45.0%
TCATGTGACTGAAAGGTCAC+GGG - chr1_2:44188738-44188757 Msa0071880:CDS 45.0%
GTATTGTATGCAGCCTTACC+TGG + chr1_2:44188782-44188801 None:intergenic 45.0%
CAGAAACTTGGAACACGGTT+AGG + chr1_2:44189097-44189116 None:intergenic 45.0%
CTAACCGTGTTCCAAGTTTC+TGG - chr1_2:44189095-44189114 Msa0071880:intron 45.0%
CCATCCAGAAACTTGGAACA+CGG + chr1_2:44189102-44189121 None:intergenic 45.0%
! CGTGTTCCAAGTTTCTGGAT+GGG - chr1_2:44189100-44189119 Msa0071880:intron 45.0%
!! CAAGAAGCATCAAGAGACTG+TGG - chr1_2:44189144-44189163 Msa0071880:intron 45.0%
!! GACAAAGTGTTGGAGAAAGC+AGG - chr1_2:44189316-44189335 Msa0071880:intron 45.0%
TCATGCCCAAATCCTATGTG+TGG - chr1_2:44189454-44189473 Msa0071880:intron 45.0%
CACGTCCACACATAGGATTT+GGG + chr1_2:44189462-44189481 None:intergenic 45.0%
ACACGTCCACACATAGGATT+TGG + chr1_2:44189463-44189482 None:intergenic 45.0%
GTCACTTGAATCAAGCACCA+AGG + chr1_2:44189540-44189559 None:intergenic 45.0%
GCTGAGATTGTACGCAACTC+AGG - chr1_2:44187379-44187398 Msa0071880:three_prime_UTR 50.0%
GATGAGCCGAAAACCCGAAA+GGG - chr1_2:44187418-44187437 Msa0071880:three_prime_UTR 50.0%
TTTGCATGAACCGCCCTTTC+GGG + chr1_2:44187434-44187453 None:intergenic 50.0%
GGGCGGTTCATGCAAAAATG+AGG - chr1_2:44187438-44187457 Msa0071880:three_prime_UTR 50.0%
GCAAATCACCATCACCCCTT+GGG - chr1_2:44187491-44187510 Msa0071880:three_prime_UTR 50.0%
CAAATCACCATCACCCCTTG+GGG - chr1_2:44187492-44187511 Msa0071880:three_prime_UTR 50.0%
! CAGCCAAAGGCATGACTTCA+CGG + chr1_2:44187653-44187672 None:intergenic 50.0%
GAAGAGTGAGAGTCAGCCAA+AGG + chr1_2:44187666-44187685 None:intergenic 50.0%
TCATTTGCGCTAGACCTCAG+TGG - chr1_2:44187984-44188003 Msa0071880:CDS 50.0%
GGATCCCCATTGTGAACAAG+TGG - chr1_2:44188255-44188274 Msa0071880:intron 50.0%
GGAATGCTTCTATGCCCCAT+TGG + chr1_2:44188478-44188497 None:intergenic 50.0%
!! TCCTCAAGTTGAAGTGGAGC+TGG - chr1_2:44188522-44188541 Msa0071880:intron 50.0%
! AGTTGAAGTGGAGCTGGCTT+TGG - chr1_2:44188528-44188547 Msa0071880:intron 50.0%
!! GTTGAAGTGGAGCTGGCTTT+GGG - chr1_2:44188529-44188548 Msa0071880:intron 50.0%
TTCAAGTCCTGGAAACAGCC+AGG - chr1_2:44188761-44188780 Msa0071880:CDS 50.0%
AACTTCAGCATACGCAGGGT+CGG + chr1_2:44188827-44188846 None:intergenic 50.0%
! CCGTGTTCCAAGTTTCTGGA+TGG - chr1_2:44189099-44189118 Msa0071880:intron 50.0%
! GACTGTGGATTGCGAGATTC+AGG - chr1_2:44189159-44189178 Msa0071880:intron 50.0%
ATCCTTGTGGATCACGTCTG+AGG + chr1_2:44189207-44189226 None:intergenic 50.0%
TCAGACGTGATCCACAAGGA+TGG - chr1_2:44189206-44189225 Msa0071880:intron 50.0%
ACTTCTTGGTCACGGTGAAC+CGG - chr1_2:44189258-44189277 Msa0071880:intron 50.0%
TCCTATGTGTGGACGTGTGA+TGG - chr1_2:44189465-44189484 Msa0071880:intron 50.0%
TCCATCACACGTCCACACAT+AGG + chr1_2:44189469-44189488 None:intergenic 50.0%
TATGTGTGGACGTGTGATGG+AGG - chr1_2:44189468-44189487 Msa0071880:intron 50.0%
! GGTTGTTTGGCTCATCACGA+TGG + chr1_2:44189519-44189538 None:intergenic 50.0%
CGTGATGAGCCAAACAACCT+TGG - chr1_2:44189520-44189539 Msa0071880:intron 50.0%
GCTGAGATTGTACGCAACTC+AGG - chr1_2:44187379-44187398 Msa0071880:three_prime_UTR 50.0%
GATGAGCCGAAAACCCGAAA+GGG - chr1_2:44187418-44187437 Msa0071880:three_prime_UTR 50.0%
TTTGCATGAACCGCCCTTTC+GGG + chr1_2:44187434-44187453 None:intergenic 50.0%
GGGCGGTTCATGCAAAAATG+AGG - chr1_2:44187438-44187457 Msa0071880:three_prime_UTR 50.0%
GCAAATCACCATCACCCCTT+GGG - chr1_2:44187491-44187510 Msa0071880:three_prime_UTR 50.0%
CAAATCACCATCACCCCTTG+GGG - chr1_2:44187492-44187511 Msa0071880:three_prime_UTR 50.0%
! CAGCCAAAGGCATGACTTCA+CGG + chr1_2:44187653-44187672 None:intergenic 50.0%
GAAGAGTGAGAGTCAGCCAA+AGG + chr1_2:44187666-44187685 None:intergenic 50.0%
TCATTTGCGCTAGACCTCAG+TGG - chr1_2:44187984-44188003 Msa0071880:CDS 50.0%
GGATCCCCATTGTGAACAAG+TGG - chr1_2:44188255-44188274 Msa0071880:intron 50.0%
GGAATGCTTCTATGCCCCAT+TGG + chr1_2:44188478-44188497 None:intergenic 50.0%
!! TCCTCAAGTTGAAGTGGAGC+TGG - chr1_2:44188522-44188541 Msa0071880:intron 50.0%
! AGTTGAAGTGGAGCTGGCTT+TGG - chr1_2:44188528-44188547 Msa0071880:intron 50.0%
!! GTTGAAGTGGAGCTGGCTTT+GGG - chr1_2:44188529-44188548 Msa0071880:intron 50.0%
TTCAAGTCCTGGAAACAGCC+AGG - chr1_2:44188761-44188780 Msa0071880:CDS 50.0%
AACTTCAGCATACGCAGGGT+CGG + chr1_2:44188827-44188846 None:intergenic 50.0%
! CCGTGTTCCAAGTTTCTGGA+TGG - chr1_2:44189099-44189118 Msa0071880:intron 50.0%
! GACTGTGGATTGCGAGATTC+AGG - chr1_2:44189159-44189178 Msa0071880:intron 50.0%
ATCCTTGTGGATCACGTCTG+AGG + chr1_2:44189207-44189226 None:intergenic 50.0%
TCAGACGTGATCCACAAGGA+TGG - chr1_2:44189206-44189225 Msa0071880:intron 50.0%
ACTTCTTGGTCACGGTGAAC+CGG - chr1_2:44189258-44189277 Msa0071880:intron 50.0%
TCCTATGTGTGGACGTGTGA+TGG - chr1_2:44189465-44189484 Msa0071880:intron 50.0%
TCCATCACACGTCCACACAT+AGG + chr1_2:44189469-44189488 None:intergenic 50.0%
TATGTGTGGACGTGTGATGG+AGG - chr1_2:44189468-44189487 Msa0071880:intron 50.0%
! GGTTGTTTGGCTCATCACGA+TGG + chr1_2:44189519-44189538 None:intergenic 50.0%
CGTGATGAGCCAAACAACCT+TGG - chr1_2:44189520-44189539 Msa0071880:intron 50.0%
!! TTCGGGTTTTCGGCTCATCG+AGG + chr1_2:44187417-44187436 None:intergenic 55.0%
CGATGAGCCGAAAACCCGAA+AGG - chr1_2:44187417-44187436 Msa0071880:three_prime_UTR 55.0%
!!! GAACCGCCCTTTCGGGTTTT+CGG + chr1_2:44187427-44187446 None:intergenic 55.0%
GGCAAATCACCATCACCCCT+TGG - chr1_2:44187490-44187509 Msa0071880:three_prime_UTR 55.0%
ACAGTTGCAGATGCCCCAAG+GGG + chr1_2:44187508-44187527 None:intergenic 55.0%
GACAGTTGCAGATGCCCCAA+GGG + chr1_2:44187509-44187528 None:intergenic 55.0%
TGACAGTTGCAGATGCCCCA+AGG + chr1_2:44187510-44187529 None:intergenic 55.0%
GCCAGCTCCACTTCAACTTG+AGG + chr1_2:44188526-44188545 None:intergenic 55.0%
AAGGTCACGGGTTCAAGTCC+TGG - chr1_2:44188750-44188769 Msa0071880:CDS 55.0%
GTCCTGGAAACAGCCAGGTA+AGG - chr1_2:44188766-44188785 Msa0071880:CDS 55.0%
! AGCCTTACCTGGCTGTTTCC+AGG + chr1_2:44188771-44188790 None:intergenic 55.0%
GGAGAAGGGGTCTCACCATT+TGG + chr1_2:44188806-44188825 None:intergenic 55.0%
TGCCTCAGACGTGATCCACA+AGG - chr1_2:44189202-44189221 Msa0071880:intron 55.0%
!! TTCGGGTTTTCGGCTCATCG+AGG + chr1_2:44187417-44187436 None:intergenic 55.0%
CGATGAGCCGAAAACCCGAA+AGG - chr1_2:44187417-44187436 Msa0071880:three_prime_UTR 55.0%
!!! GAACCGCCCTTTCGGGTTTT+CGG + chr1_2:44187427-44187446 None:intergenic 55.0%
GGCAAATCACCATCACCCCT+TGG - chr1_2:44187490-44187509 Msa0071880:three_prime_UTR 55.0%
ACAGTTGCAGATGCCCCAAG+GGG + chr1_2:44187508-44187527 None:intergenic 55.0%
GACAGTTGCAGATGCCCCAA+GGG + chr1_2:44187509-44187528 None:intergenic 55.0%
TGACAGTTGCAGATGCCCCA+AGG + chr1_2:44187510-44187529 None:intergenic 55.0%
GCCAGCTCCACTTCAACTTG+AGG + chr1_2:44188526-44188545 None:intergenic 55.0%
AAGGTCACGGGTTCAAGTCC+TGG - chr1_2:44188750-44188769 Msa0071880:CDS 55.0%
GTCCTGGAAACAGCCAGGTA+AGG - chr1_2:44188766-44188785 Msa0071880:CDS 55.0%
! AGCCTTACCTGGCTGTTTCC+AGG + chr1_2:44188771-44188790 None:intergenic 55.0%
GGAGAAGGGGTCTCACCATT+TGG + chr1_2:44188806-44188825 None:intergenic 55.0%
TGCCTCAGACGTGATCCACA+AGG - chr1_2:44189202-44189221 Msa0071880:intron 55.0%
GAGCCGAAAACCCGAAAGGG+CGG - chr1_2:44187421-44187440 Msa0071880:three_prime_UTR 60.0%
CATACGCAGGGTCGGAGAAG+GGG + chr1_2:44188819-44188838 None:intergenic 60.0%
GCATACGCAGGGTCGGAGAA+GGG + chr1_2:44188820-44188839 None:intergenic 60.0%
AGCATACGCAGGGTCGGAGA+AGG + chr1_2:44188821-44188840 None:intergenic 60.0%
GAGCCGAAAACCCGAAAGGG+CGG - chr1_2:44187421-44187440 Msa0071880:three_prime_UTR 60.0%
CATACGCAGGGTCGGAGAAG+GGG + chr1_2:44188819-44188838 None:intergenic 60.0%
GCATACGCAGGGTCGGAGAA+GGG + chr1_2:44188820-44188839 None:intergenic 60.0%
AGCATACGCAGGGTCGGAGA+AGG + chr1_2:44188821-44188840 None:intergenic 60.0%
GCAGATGCCCCAAGGGGTGA+TGG + chr1_2:44187502-44187521 None:intergenic 65.0%
GCAGATGCCCCAAGGGGTGA+TGG + chr1_2:44187502-44187521 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 44187361 44189794 44187361 ID=Msa0071880;Name=Msa0071880
chr1_2 mRNA 44187361 44189794 44187361 ID=Msa0071880-mRNA-1;Parent=Msa0071880;Name=Msa0071880-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0.25|0.5|1|1|4|245|429
chr1_2 exon 44187361 44188211 44187361 ID=Msa0071880-mRNA-1:exon:13358;Parent=Msa0071880-mRNA-1
chr1_2 exon 44188373 44188402 44188373 ID=Msa0071880-mRNA-1:exon:13357;Parent=Msa0071880-mRNA-1
chr1_2 exon 44188572 44189060 44188572 ID=Msa0071880-mRNA-1:exon:13356;Parent=Msa0071880-mRNA-1
chr1_2 exon 44189630 44189794 44189630 ID=Msa0071880-mRNA-1:exon:13355;Parent=Msa0071880-mRNA-1
chr1_2 CDS 44189630 44189794 44189630 ID=Msa0071880-mRNA-1:cds;Parent=Msa0071880-mRNA-1
chr1_2 CDS 44188572 44189060 44188572 ID=Msa0071880-mRNA-1:cds;Parent=Msa0071880-mRNA-1
chr1_2 CDS 44188373 44188402 44188373 ID=Msa0071880-mRNA-1:cds;Parent=Msa0071880-mRNA-1
chr1_2 CDS 44187606 44188211 44187606 ID=Msa0071880-mRNA-1:cds;Parent=Msa0071880-mRNA-1
chr1_2 three_prime_UTR 44187361 44187605 44187361 ID=Msa0071880-mRNA-1:three_prime_utr;Parent=Msa0071880-mRNA-1
Gene Sequence

>Msa0071880

ATGAATATGAAAAAGCTCGCTGAGATTGTACGCAACTCAGGCAAGAATGAGCGCCTCGATGAGCCGAAAACCCGAAAGGGCGGTTCATGCAAAAATGAGGTTAACAATAAAAGACAAGTAACTACATCTGGCAAATCACCATCACCCCTTGGGGCATCTGCAACTGGTCTTGATATTTTTAAGCAGAAACATGTGTTGCTATTCATTTCAAGCCTTGATAGCATTCAAGATGAGATCACACTTTTGAATTCAATCTATGAAAGATTGCAAGAAAATCCGAAAGAACCAATAAAAGGTTTCAAGAAAGAAGACTTCAAGATTCTGTGGATCCCCATTGTGAACAAGTGGGATGATATCCAGAGAGAAAATTTCAAAACATTGAAGAGTGGCATCAAATGGTATGTAGTGGAGTACTTTTCTGAGTTACCAGGTCTCAAGATAATAAAAGATCCAGAATTAATAGGCTACAATGATGATAAGCCTATTATCCCAGTGTTCAACCCTAAAGGAATCAAAACCAATGAAGATGCTATGGACTTGATTTTCCAATGGGGCATAGAAGCATTCCCATTTAGGAAAAGTGATGGTACTCTCCTCAAGTTGAAGTGGAGCTGGCTTTGGGATGTCATCAAAAGAGCAACTCCTGGTATACAGGTCACGGGTTCAAGTCCTGGAAACAGCCAGGTGAAAGTGGACAGATACATCTTTATCTATGGAGGTACCAACAAGAAATGGATCCAAGATTTCACACTTGAGTTGGAAAAGGTCAAAAGGCACGAGACTACCAAGCGTGCAGACGTTATAATAGAGAATTATCAAGTGGGCAAAGATGACCCTAACCGTGTTCCAAGTTTCTGGATGGGTATAGAAAGAAAGAAACAAAACAAGAAGCATCAAGAGACTGTGGATTGCGAGATTCAGGAAATAGTGAAAGAGTTGTTTTGCCTCAGACGTGATCCACAAGGATGGTTTATTCTAAGCAAAGGACATAACATTAAACTTCTTGGTCACGGTGAACCGGCTTATCAAACTTTGGTTGAGTTTCAGAATTGGAAAGACAAAGTGTTGGAGAAAGCAGGGTTTGATATTGCATTTAAAGAGTATTATGAGATTAAGGCTAAAGAGATATCTGATCGTGAACCATGTGAAGTTCTTAATGTTGATACCTATAGTTCAAATGTTATAGGTACTATATCATGCCCAAATCCTATGTGTGGACGTGTGATGGAGGTTAGTTCTATTCATTACAAGTGCTGCCATCGTGATGAGCCAAACAACCTTGGTGCTTGA

Protein sequence

>Msa0071880

MNMKKLAEIVRNSGKNERLDEPKTRKGGSCKNEVNNKRQVTTSGKSPSPLGASATGLDIFKQKHVLLFISSLDSIQDEITLLNSIYERLQENPKEPIKGFKKEDFKILWIPIVNKWDDIQRENFKTLKSGIKWYVVEYFSELPGLKIIKDPELIGYNDDKPIIPVFNPKGIKTNEDAMDLIFQWGIEAFPFRKSDGTLLKLKWSWLWDVIKRATPGIQVTGSSPGNSQVKVDRYIFIYGGTNKKWIQDFTLELEKVKRHETTKRADVIIENYQVGKDDPNRVPSFWMGIERKKQNKKHQETVDCEIQEIVKELFCLRRDPQGWFILSKGHNIKLLGHGEPAYQTLVEFQNWKDKVLEKAGFDIAFKEYYEIKAKEISDREPCEVLNVDTYSSNVIGTISCPNPMCGRVMEVSSIHYKCCHRDEPNNLGA*