AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0689800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0689800 MtrunA17_Chr5g0403961 63.077 65 14 2 1 65 1 55 8.51e-19 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 84 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTGTTCGTCTTGGTTTC+TGG 0.084390 4_4:-57006931 Msa0689800:CDS
CATATCGTTCAACCGTTTCT+AGG 0.229849 4_4:-57007260 Msa0689800:five_prime_UTR
AGAGTGCAATGAAGCAATTT+TGG 0.237788 4_4:-57005713 Msa0689800:three_prime_UTR
GATGAAGATTGGAAGGTCTT+TGG 0.239623 4_4:-57006660 Msa0689800:three_prime_UTR
TACATGATCTACTAATTTCT+TGG 0.278933 4_4:+57005845 None:intergenic
ATGAAGATTGGAAGGTCTTT+GGG 0.296306 4_4:-57006659 Msa0689800:three_prime_UTR
GTAAATCCGGTGTTGAAATA+TGG 0.311391 4_4:-57006817 Msa0689800:CDS
TGGATGTAGGATATAACTTT+AGG 0.315945 4_4:-57006624 Msa0689800:three_prime_UTR
TAGATCTCAGCGGTGAATTA+TGG 0.318563 4_4:-57006747 Msa0689800:three_prime_UTR
TAGTTTGATTGATTTACTAA+TGG 0.324398 4_4:-57005114 Msa0689800:three_prime_UTR
TTCTTTATTCATACTGTGTA+TGG 0.326693 4_4:-57005361 Msa0689800:three_prime_UTR
TATTAATCTTGAATCAATAA+AGG 0.333488 4_4:+57007171 None:intergenic
GTCAGGTGCGCTTGCTTGGC+AGG 0.350358 4_4:-57006526 Msa0689800:three_prime_UTR
AACGGTTGAACGATATGAAT+TGG 0.363820 4_4:+57007266 None:intergenic
TATGTTTATATGATGAAGAT+TGG 0.365484 4_4:-57006671 Msa0689800:three_prime_UTR
CCATGTCAGGTGCGCTTGCT+TGG 0.370305 4_4:-57006530 Msa0689800:three_prime_UTR
TTTGTTCAAAATGCAAATAC+AGG 0.372836 4_4:+57005249 None:intergenic
CTCTCTTCCATTCCTCCCAT+TGG 0.378687 4_4:+57005732 None:intergenic
CATTATTGTGATTAATACTA+AGG 0.393137 4_4:-57005657 Msa0689800:three_prime_UTR
AAATTAGTAGATCATGTATC+AGG 0.402589 4_4:-57005840 Msa0689800:three_prime_UTR
CATCCGACCTTTGCCATGTC+AGG 0.416093 4_4:-57006543 Msa0689800:three_prime_UTR
CAAAATCCATTATAAAAGAA+AGG 0.431202 4_4:-57007300 Msa0689800:five_prime_UTR
GATTCAGATGTTTCAGATCT+CGG 0.432678 4_4:-57006704 Msa0689800:three_prime_UTR
TGTAAATTCATCAAGGGACT+TGG 0.453964 4_4:-57005807 Msa0689800:three_prime_UTR
GACGAACAAGTTCACACCTC+TGG 0.455850 4_4:+57006942 None:intergenic
ATTGAAGGAAAGAAGGAAGA+AGG 0.460468 4_4:+57007225 None:intergenic
CCAAGCAAGCGCACCTGACA+TGG 0.466895 4_4:+57006530 None:intergenic
ACTAAGGTGAAGATGACTTC+GGG 0.472109 4_4:-57005641 Msa0689800:three_prime_UTR
TTGAAGGAAAGAAGGAAGAA+GGG 0.479770 4_4:+57007226 None:intergenic
AAAATCCATTATAAAAGAAA+GGG 0.480170 4_4:-57007299 Msa0689800:five_prime_UTR
TAGACGAGATCTGAGATTGA+AGG 0.485194 4_4:+57007210 None:intergenic
AGGTGTGAACTTGTTCGTCT+TGG 0.490491 4_4:-57006938 Msa0689800:CDS
ATCTGAGATTGAAGGAAAGA+AGG 0.501636 4_4:+57007218 None:intergenic
AATCTTGAATCAATAAAGGT+TGG 0.501834 4_4:+57007175 None:intergenic
CCTTGAGGAGATCGTAAATC+CGG 0.503329 4_4:-57006830 Msa0689800:CDS
AAATGCAAATACAGGTTCTC+CGG 0.505366 4_4:+57005257 None:intergenic
ATATCGTTCAACCGTTTCTA+GGG 0.506871 4_4:-57007259 Msa0689800:five_prime_UTR
GTCATCCTCTTCATCCATTG+AGG 0.527772 4_4:-57005495 Msa0689800:three_prime_UTR
GCTGAGATTAGTTGTGTTGA+CGG 0.528897 4_4:+57007335 None:intergenic
ATTTATCGACTAGCACCAAT+GGG 0.529092 4_4:-57005747 Msa0689800:three_prime_UTR
TTTATATGATGAAGATTGGA+AGG 0.545648 4_4:-57006667 Msa0689800:three_prime_UTR
TAGCTTCGATGAATCCGTCC+GGG 0.547769 4_4:+57006346 None:intergenic
TTGAATCAATAAAGGTTGGA+AGG 0.550125 4_4:+57007179 None:intergenic
CACACACGAGAGAAGATCCC+GGG 0.550552 4_4:+57006443 None:intergenic
TTAGCTTCGATGAATCCGTC+CGG 0.551236 4_4:+57006345 None:intergenic
ACTAGCACCAATGGGAGGAA+TGG 0.553780 4_4:-57005739 Msa0689800:three_prime_UTR
CCATTGAGGAAAAGATGACT+AGG 0.555063 4_4:-57005481 Msa0689800:three_prime_UTR
GGGTGGGATATAATGGATGT+AGG 0.555185 4_4:-57006637 Msa0689800:three_prime_UTR
AATCACAATAATGATTGAAG+AGG 0.555949 4_4:+57005667 None:intergenic
ATAGCTCTGTAAATTCATCA+AGG 0.557269 4_4:-57005814 Msa0689800:three_prime_UTR
GATTTATCGACTAGCACCAA+TGG 0.559545 4_4:-57005748 Msa0689800:three_prime_UTR
CGCTCTACTCACAATAGCCC+CGG 0.565882 4_4:-57006364 Msa0689800:three_prime_UTR
CAAGATTAATATAGATCCGA+TGG 0.566520 4_4:-57007159 Msa0689800:exon
TACTAAGGTGAAGATGACTT+CGG 0.568061 4_4:-57005642 Msa0689800:three_prime_UTR
GAATCGTGAAACCCTAGAAA+CGG 0.568617 4_4:+57007248 None:intergenic
CGGATGACAAGATCACTCTC+AGG 0.573514 4_4:+57006560 None:intergenic
TTGATGCGCTGAGCGTATGA+AGG 0.575533 4_4:-57006590 Msa0689800:three_prime_UTR
TTCATACGCTCAGCGCATCA+AGG 0.578674 4_4:+57006592 None:intergenic
TGAAGATTGGAAGGTCTTTG+GGG 0.582578 4_4:-57006658 Msa0689800:three_prime_UTR
ACAATAATGATTGAAGAGGA+TGG 0.583973 4_4:+57005671 None:intergenic
ATCAGCATGTAGATCTCCAT+CGG 0.587084 4_4:+57007143 None:intergenic
ATAAGGAAAGGAACAAGGCA+AGG 0.588509 4_4:+57006412 None:intergenic
ACACACACGAGAGAAGATCC+CGG 0.591246 4_4:+57006442 None:intergenic
GAATCGCCATATTTCAACAC+CGG 0.591959 4_4:+57006811 None:intergenic
TTCCTAAGTCAAGGCTCTGG+AGG 0.594153 4_4:-57006880 Msa0689800:intron
GGGATCTTCTCTCGTGTGTG+TGG 0.604344 4_4:-57006440 Msa0689800:three_prime_UTR
CACCGCTGAGATCTACAACT+CGG 0.618056 4_4:+57006755 None:intergenic
GAAGATTGGAAGGTCTTTGG+GGG 0.627741 4_4:-57006657 Msa0689800:three_prime_UTR
AAGCGCACCTGACATGGCAA+AGG 0.629352 4_4:+57006536 None:intergenic
TAGCTCTGTAAATTCATCAA+GGG 0.634789 4_4:-57005813 Msa0689800:three_prime_UTR
GATTAGTTGTGTTGACGGTG+TGG 0.639961 4_4:+57007340 None:intergenic
CCGGATTTACGATCTCCTCA+AGG 0.641807 4_4:+57006830 None:intergenic
AAAGAATAAGGAAAGGAACA+AGG 0.645363 4_4:+57006407 None:intergenic
GATGGAGATCTACATGCTGA+TGG 0.646240 4_4:-57007141 Msa0689800:CDS
GCACCTGACATGGCAAAGGT+CGG 0.647464 4_4:+57006540 None:intergenic
AGCTTCGATGAATCCGTCCG+GGG 0.673406 4_4:+57006347 None:intergenic
GCATCAGATCTACGATCCAG+AGG 0.674565 4_4:-57006958 Msa0689800:CDS
CTACTCACAATAGCCCCGGA+CGG 0.678589 4_4:-57006360 Msa0689800:three_prime_UTR
AATCTCAAGACTCAATAACA+AGG 0.690550 4_4:-57006324 Msa0689800:intron
TGTGAGTAGAGCGAGATGCG+TGG 0.699112 4_4:+57006374 None:intergenic
GGAGATCTACATGCTGATGG+TGG 0.705213 4_4:-57007138 Msa0689800:CDS
TATCGACTAGCACCAATGGG+AGG 0.705230 4_4:-57005744 Msa0689800:three_prime_UTR
GGTATGGTGGTGGATCCTTG+AGG 0.722075 4_4:-57006845 Msa0689800:CDS
TTCCGAGTTGTAGATCTCAG+CGG 0.734183 4_4:-57006757 Msa0689800:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATAAAAAAAGTTTTGT+TGG - chr4_4:57005951-57005970 Msa0689800:intron 10.0%
!! AAAATATTGCAAAATAAATT+AGG + chr4_4:57006246-57006265 None:intergenic 10.0%
!!! TTTTGCAATATTTTTTAATA+AGG - chr4_4:57006252-57006271 Msa0689800:intron 10.0%
!! AAATTAGATTCAATATAATT+TGG + chr4_4:57006401-57006420 None:intergenic 10.0%
!!! AATAATAAAAAAAGTTTTGT+TGG - chr4_4:57005951-57005970 Msa0689800:intron 10.0%
!! AAAATATTGCAAAATAAATT+AGG + chr4_4:57006246-57006265 None:intergenic 10.0%
!!! TTTTGCAATATTTTTTAATA+AGG - chr4_4:57006252-57006271 Msa0689800:intron 10.0%
!! AAATTAGATTCAATATAATT+TGG + chr4_4:57006401-57006420 None:intergenic 10.0%
!! AAAATCCATTATAAAAGAAA+GGG - chr4_4:57005146-57005165 Msa0689800:three_prime_UTR 15.0%
!! TATTAATCTTGAATCAATAA+AGG + chr4_4:57005277-57005296 None:intergenic 15.0%
!! TAAATAAAAAGAATAAGGAA+AGG + chr4_4:57006048-57006067 None:intergenic 15.0%
!! GGTAATAAATAAAAAGAATA+AGG + chr4_4:57006053-57006072 None:intergenic 15.0%
!!! TTAGTTTTTAAATTAAGTTC+AGG - chr4_4:57007238-57007257 Msa0689800:five_prime_UTR 15.0%
!! AAAATCCATTATAAAAGAAA+GGG - chr4_4:57005146-57005165 Msa0689800:three_prime_UTR 15.0%
!! TATTAATCTTGAATCAATAA+AGG + chr4_4:57005277-57005296 None:intergenic 15.0%
!! TAAATAAAAAGAATAAGGAA+AGG + chr4_4:57006048-57006067 None:intergenic 15.0%
!! GGTAATAAATAAAAAGAATA+AGG + chr4_4:57006053-57006072 None:intergenic 15.0%
!!! TTAGTTTTTAAATTAAGTTC+AGG - chr4_4:57007238-57007257 Msa0689800:five_prime_UTR 15.0%
!!! CTTTCTTTTATAATGGATTT+TGG + chr4_4:57005147-57005166 None:intergenic 20.0%
!! CAAAATCCATTATAAAAGAA+AGG - chr4_4:57005145-57005164 Msa0689800:three_prime_UTR 20.0%
!! TATGTTTATATGATGAAGAT+TGG - chr4_4:57005774-57005793 Msa0689800:three_prime_UTR 20.0%
!!! TATTTTTTAATAAGGAATCG+TGG - chr4_4:57006260-57006279 Msa0689800:intron 20.0%
!! CATTATTGTGATTAATACTA+AGG - chr4_4:57006788-57006807 Msa0689800:exon 20.0%
!! CACAAAAAAAATGTAATCAA+GGG + chr4_4:57007116-57007135 None:intergenic 20.0%
!!! TAGTTTGATTGATTTACTAA+TGG - chr4_4:57007331-57007350 Msa0689800:five_prime_UTR 20.0%
!!! CTTTCTTTTATAATGGATTT+TGG + chr4_4:57005147-57005166 None:intergenic 20.0%
!! CAAAATCCATTATAAAAGAA+AGG - chr4_4:57005145-57005164 Msa0689800:three_prime_UTR 20.0%
!! TATGTTTATATGATGAAGAT+TGG - chr4_4:57005774-57005793 Msa0689800:three_prime_UTR 20.0%
!!! TATTTTTTAATAAGGAATCG+TGG - chr4_4:57006260-57006279 Msa0689800:intron 20.0%
!! CATTATTGTGATTAATACTA+AGG - chr4_4:57006788-57006807 Msa0689800:exon 20.0%
!! CACAAAAAAAATGTAATCAA+GGG + chr4_4:57007116-57007135 None:intergenic 20.0%
!!! TAGTTTGATTGATTTACTAA+TGG - chr4_4:57007331-57007350 Msa0689800:five_prime_UTR 20.0%
!!! TATAATGGATTTTGGTAGAA+TGG + chr4_4:57005139-57005158 None:intergenic 25.0%
! AATCTTGAATCAATAAAGGT+TGG + chr4_4:57005273-57005292 None:intergenic 25.0%
! AAAGAAATATGATCGAAAAC+AGG + chr4_4:57005349-57005368 None:intergenic 25.0%
! TCGAATGAATTATCTAGAAA+CGG + chr4_4:57005542-57005561 None:intergenic 25.0%
! TTTATATGATGAAGATTGGA+AGG - chr4_4:57005778-57005797 Msa0689800:three_prime_UTR 25.0%
! TTGTACACTATCATTCTTAA+TGG - chr4_4:57006489-57006508 Msa0689800:three_prime_UTR 25.0%
! TACATGATCTACTAATTTCT+TGG + chr4_4:57006603-57006622 None:intergenic 25.0%
! AAATTAGTAGATCATGTATC+AGG - chr4_4:57006605-57006624 Msa0689800:three_prime_UTR 25.0%
! AATCACAATAATGATTGAAG+AGG + chr4_4:57006781-57006800 None:intergenic 25.0%
! TTCTTTATTCATACTGTGTA+TGG - chr4_4:57007084-57007103 Msa0689800:intron 25.0%
! AAAAAAATGTAATCAAGGGA+GGG + chr4_4:57007112-57007131 None:intergenic 25.0%
! AAAAAAAATGTAATCAAGGG+AGG + chr4_4:57007113-57007132 None:intergenic 25.0%
! CCACAAAAAAAATGTAATCA+AGG + chr4_4:57007117-57007136 None:intergenic 25.0%
!!! CCTTGATTACATTTTTTTTG+TGG - chr4_4:57007114-57007133 Msa0689800:intron 25.0%
!! GAATGCATTTTATGTTTTAC+CGG - chr4_4:57007169-57007188 Msa0689800:five_prime_UTR 25.0%
! TTTGTTCAAAATGCAAATAC+AGG + chr4_4:57007199-57007218 None:intergenic 25.0%
!! ATTTTGAACAAATACACAAG+CGG - chr4_4:57007207-57007226 Msa0689800:five_prime_UTR 25.0%
!!! TATAATGGATTTTGGTAGAA+TGG + chr4_4:57005139-57005158 None:intergenic 25.0%
! AATCTTGAATCAATAAAGGT+TGG + chr4_4:57005273-57005292 None:intergenic 25.0%
! AAAGAAATATGATCGAAAAC+AGG + chr4_4:57005349-57005368 None:intergenic 25.0%
! TCGAATGAATTATCTAGAAA+CGG + chr4_4:57005542-57005561 None:intergenic 25.0%
! TTTATATGATGAAGATTGGA+AGG - chr4_4:57005778-57005797 Msa0689800:three_prime_UTR 25.0%
! TTGTACACTATCATTCTTAA+TGG - chr4_4:57006489-57006508 Msa0689800:three_prime_UTR 25.0%
! TACATGATCTACTAATTTCT+TGG + chr4_4:57006603-57006622 None:intergenic 25.0%
! AAATTAGTAGATCATGTATC+AGG - chr4_4:57006605-57006624 Msa0689800:three_prime_UTR 25.0%
! AATCACAATAATGATTGAAG+AGG + chr4_4:57006781-57006800 None:intergenic 25.0%
! TTCTTTATTCATACTGTGTA+TGG - chr4_4:57007084-57007103 Msa0689800:intron 25.0%
! AAAAAAATGTAATCAAGGGA+GGG + chr4_4:57007112-57007131 None:intergenic 25.0%
! AAAAAAAATGTAATCAAGGG+AGG + chr4_4:57007113-57007132 None:intergenic 25.0%
! CCACAAAAAAAATGTAATCA+AGG + chr4_4:57007117-57007136 None:intergenic 25.0%
!!! CCTTGATTACATTTTTTTTG+TGG - chr4_4:57007114-57007133 Msa0689800:intron 25.0%
!! GAATGCATTTTATGTTTTAC+CGG - chr4_4:57007169-57007188 Msa0689800:five_prime_UTR 25.0%
! TTTGTTCAAAATGCAAATAC+AGG + chr4_4:57007199-57007218 None:intergenic 25.0%
!! ATTTTGAACAAATACACAAG+CGG - chr4_4:57007207-57007226 Msa0689800:five_prime_UTR 25.0%
! CACAACCCTTTCTTTTATAA+TGG + chr4_4:57005154-57005173 None:intergenic 30.0%
TTGAATCAATAAAGGTTGGA+AGG + chr4_4:57005269-57005288 None:intergenic 30.0%
CAAGATTAATATAGATCCGA+TGG - chr4_4:57005286-57005305 Msa0689800:three_prime_UTR 30.0%
! ATTCGATTTTTCCTAAGTCA+AGG - chr4_4:57005556-57005575 Msa0689800:three_prime_UTR 30.0%
TGGATGTAGGATATAACTTT+AGG - chr4_4:57005821-57005840 Msa0689800:three_prime_UTR 30.0%
AAAGAATAAGGAAAGGAACA+AGG + chr4_4:57006041-57006060 None:intergenic 30.0%
AATCTCAAGACTCAATAACA+AGG - chr4_4:57006121-57006140 Msa0689800:intron 30.0%
! ATCTAAAGCAGAAGTTGTAT+CGG - chr4_4:57006452-57006471 Msa0689800:three_prime_UTR 30.0%
GACAAGCATTTATGAACAAA+AGG + chr4_4:57006518-57006537 None:intergenic 30.0%
TGCTTGTCAAATGTAAACTA+TGG - chr4_4:57006530-57006549 Msa0689800:three_prime_UTR 30.0%
! ATAGCTCTGTAAATTCATCA+AGG - chr4_4:57006631-57006650 Msa0689800:three_prime_UTR 30.0%
! TAGCTCTGTAAATTCATCAA+GGG - chr4_4:57006632-57006651 Msa0689800:three_prime_UTR 30.0%
ACAATAATGATTGAAGAGGA+TGG + chr4_4:57006777-57006796 None:intergenic 30.0%
!! TTTTCACTTGGTTCAAGTTA+AGG - chr4_4:57006989-57007008 Msa0689800:intron 30.0%
AAAAAATGTAATCAAGGGAG+GGG + chr4_4:57007111-57007130 None:intergenic 30.0%
!! TTTTTGTGGATTGAAGTTTG+AGG - chr4_4:57007128-57007147 Msa0689800:CDS 30.0%
!! TTTTGTGGATTGAAGTTTGA+GGG - chr4_4:57007129-57007148 Msa0689800:CDS 30.0%
! CACAACCCTTTCTTTTATAA+TGG + chr4_4:57005154-57005173 None:intergenic 30.0%
TTGAATCAATAAAGGTTGGA+AGG + chr4_4:57005269-57005288 None:intergenic 30.0%
CAAGATTAATATAGATCCGA+TGG - chr4_4:57005286-57005305 Msa0689800:three_prime_UTR 30.0%
! ATTCGATTTTTCCTAAGTCA+AGG - chr4_4:57005556-57005575 Msa0689800:three_prime_UTR 30.0%
TGGATGTAGGATATAACTTT+AGG - chr4_4:57005821-57005840 Msa0689800:three_prime_UTR 30.0%
AAAGAATAAGGAAAGGAACA+AGG + chr4_4:57006041-57006060 None:intergenic 30.0%
AATCTCAAGACTCAATAACA+AGG - chr4_4:57006121-57006140 Msa0689800:intron 30.0%
! ATCTAAAGCAGAAGTTGTAT+CGG - chr4_4:57006452-57006471 Msa0689800:three_prime_UTR 30.0%
GACAAGCATTTATGAACAAA+AGG + chr4_4:57006518-57006537 None:intergenic 30.0%
TGCTTGTCAAATGTAAACTA+TGG - chr4_4:57006530-57006549 Msa0689800:three_prime_UTR 30.0%
! ATAGCTCTGTAAATTCATCA+AGG - chr4_4:57006631-57006650 Msa0689800:three_prime_UTR 30.0%
! TAGCTCTGTAAATTCATCAA+GGG - chr4_4:57006632-57006651 Msa0689800:three_prime_UTR 30.0%
ACAATAATGATTGAAGAGGA+TGG + chr4_4:57006777-57006796 None:intergenic 30.0%
!! TTTTCACTTGGTTCAAGTTA+AGG - chr4_4:57006989-57007008 Msa0689800:intron 30.0%
AAAAAATGTAATCAAGGGAG+GGG + chr4_4:57007111-57007130 None:intergenic 30.0%
!! TTTTTGTGGATTGAAGTTTG+AGG - chr4_4:57007128-57007147 Msa0689800:CDS 30.0%
!! TTTTGTGGATTGAAGTTTGA+GGG - chr4_4:57007129-57007148 Msa0689800:CDS 30.0%
!! ATGGATTTTGGTAGAATGGA+CGG + chr4_4:57005135-57005154 None:intergenic 35.0%
AACGGTTGAACGATATGAAT+TGG + chr4_4:57005182-57005201 None:intergenic 35.0%
ATATCGTTCAACCGTTTCTA+GGG - chr4_4:57005186-57005205 Msa0689800:three_prime_UTR 35.0%
TTGAAGGAAAGAAGGAAGAA+GGG + chr4_4:57005222-57005241 None:intergenic 35.0%
ATTGAAGGAAAGAAGGAAGA+AGG + chr4_4:57005223-57005242 None:intergenic 35.0%
! ATCTGAGATTGAAGGAAAGA+AGG + chr4_4:57005230-57005249 None:intergenic 35.0%
!!! GAGGTATTTTTTTGCAGGTA+TGG - chr4_4:57005584-57005603 Msa0689800:three_prime_UTR 35.0%
!!! GTATTTTTTTGCAGGTATGG+TGG - chr4_4:57005587-57005606 Msa0689800:three_prime_UTR 35.0%
! GTAAATCCGGTGTTGAAATA+TGG - chr4_4:57005628-57005647 Msa0689800:three_prime_UTR 35.0%
GATTCAGATGTTTCAGATCT+CGG - chr4_4:57005741-57005760 Msa0689800:three_prime_UTR 35.0%
ATGAAGATTGGAAGGTCTTT+GGG - chr4_4:57005786-57005805 Msa0689800:three_prime_UTR 35.0%
! TCTAAAGCAGAAGTTGTATC+GGG - chr4_4:57006453-57006472 Msa0689800:three_prime_UTR 35.0%
TGTAAATTCATCAAGGGACT+TGG - chr4_4:57006638-57006657 Msa0689800:three_prime_UTR 35.0%
! ATTTATCGACTAGCACCAAT+GGG - chr4_4:57006698-57006717 Msa0689800:three_prime_UTR 35.0%
! AGAGTGCAATGAAGCAATTT+TGG - chr4_4:57006732-57006751 Msa0689800:three_prime_UTR 35.0%
! GAGTGCAATGAAGCAATTTT+GGG - chr4_4:57006733-57006752 Msa0689800:three_prime_UTR 35.0%
TACTAAGGTGAAGATGACTT+CGG - chr4_4:57006803-57006822 Msa0689800:CDS 35.0%
!!! GATGACTAGGTTTTTTCACT+TGG - chr4_4:57006977-57006996 Msa0689800:CDS 35.0%
AAATGCAAATACAGGTTCTC+CGG + chr4_4:57007191-57007210 None:intergenic 35.0%
!! ATGGATTTTGGTAGAATGGA+CGG + chr4_4:57005135-57005154 None:intergenic 35.0%
AACGGTTGAACGATATGAAT+TGG + chr4_4:57005182-57005201 None:intergenic 35.0%
ATATCGTTCAACCGTTTCTA+GGG - chr4_4:57005186-57005205 Msa0689800:three_prime_UTR 35.0%
TTGAAGGAAAGAAGGAAGAA+GGG + chr4_4:57005222-57005241 None:intergenic 35.0%
ATTGAAGGAAAGAAGGAAGA+AGG + chr4_4:57005223-57005242 None:intergenic 35.0%
! ATCTGAGATTGAAGGAAAGA+AGG + chr4_4:57005230-57005249 None:intergenic 35.0%
!!! GAGGTATTTTTTTGCAGGTA+TGG - chr4_4:57005584-57005603 Msa0689800:three_prime_UTR 35.0%
!!! GTATTTTTTTGCAGGTATGG+TGG - chr4_4:57005587-57005606 Msa0689800:three_prime_UTR 35.0%
! GTAAATCCGGTGTTGAAATA+TGG - chr4_4:57005628-57005647 Msa0689800:three_prime_UTR 35.0%
GATTCAGATGTTTCAGATCT+CGG - chr4_4:57005741-57005760 Msa0689800:three_prime_UTR 35.0%
ATGAAGATTGGAAGGTCTTT+GGG - chr4_4:57005786-57005805 Msa0689800:three_prime_UTR 35.0%
! TCTAAAGCAGAAGTTGTATC+GGG - chr4_4:57006453-57006472 Msa0689800:three_prime_UTR 35.0%
TGTAAATTCATCAAGGGACT+TGG - chr4_4:57006638-57006657 Msa0689800:three_prime_UTR 35.0%
! ATTTATCGACTAGCACCAAT+GGG - chr4_4:57006698-57006717 Msa0689800:three_prime_UTR 35.0%
! AGAGTGCAATGAAGCAATTT+TGG - chr4_4:57006732-57006751 Msa0689800:three_prime_UTR 35.0%
! GAGTGCAATGAAGCAATTTT+GGG - chr4_4:57006733-57006752 Msa0689800:three_prime_UTR 35.0%
TACTAAGGTGAAGATGACTT+CGG - chr4_4:57006803-57006822 Msa0689800:CDS 35.0%
!!! GATGACTAGGTTTTTTCACT+TGG - chr4_4:57006977-57006996 Msa0689800:CDS 35.0%
AAATGCAAATACAGGTTCTC+CGG + chr4_4:57007191-57007210 None:intergenic 35.0%
! GCTGAGATTAGTTGTGTTGA+CGG + chr4_4:57005113-57005132 None:intergenic 40.0%
CATATCGTTCAACCGTTTCT+AGG - chr4_4:57005185-57005204 Msa0689800:three_prime_UTR 40.0%
GAATCGTGAAACCCTAGAAA+CGG + chr4_4:57005200-57005219 None:intergenic 40.0%
! TAGACGAGATCTGAGATTGA+AGG + chr4_4:57005238-57005257 None:intergenic 40.0%
ATCAGCATGTAGATCTCCAT+CGG + chr4_4:57005305-57005324 None:intergenic 40.0%
! AACTTGTTCGTCTTGGTTTC+TGG - chr4_4:57005514-57005533 Msa0689800:three_prime_UTR 40.0%
! TTTTTCCTAAGTCAAGGCTC+TGG - chr4_4:57005562-57005581 Msa0689800:three_prime_UTR 40.0%
!!! CTCTGGAGGTATTTTTTTGC+AGG - chr4_4:57005579-57005598 Msa0689800:three_prime_UTR 40.0%
!!! TTTTTTTGCAGGTATGGTGG+TGG - chr4_4:57005590-57005609 Msa0689800:three_prime_UTR 40.0%
GAATCGCCATATTTCAACAC+CGG + chr4_4:57005637-57005656 None:intergenic 40.0%
TAGATCTCAGCGGTGAATTA+TGG - chr4_4:57005698-57005717 Msa0689800:three_prime_UTR 40.0%
GATGAAGATTGGAAGGTCTT+TGG - chr4_4:57005785-57005804 Msa0689800:three_prime_UTR 40.0%
TGAAGATTGGAAGGTCTTTG+GGG - chr4_4:57005787-57005806 Msa0689800:three_prime_UTR 40.0%
ATAAGGAAAGGAACAAGGCA+AGG + chr4_4:57006036-57006055 None:intergenic 40.0%
CTAAAGCAGAAGTTGTATCG+GGG - chr4_4:57006454-57006473 Msa0689800:three_prime_UTR 40.0%
GTAAACTATGGTTTCCGCTT+TGG - chr4_4:57006542-57006561 Msa0689800:three_prime_UTR 40.0%
ACAAAGTACAACAGCCAAAG+CGG + chr4_4:57006559-57006578 None:intergenic 40.0%
! GATTTATCGACTAGCACCAA+TGG - chr4_4:57006697-57006716 Msa0689800:three_prime_UTR 40.0%
ACTAAGGTGAAGATGACTTC+GGG - chr4_4:57006804-57006823 Msa0689800:CDS 40.0%
! CTTTTCCTCAATGGATGAAG+AGG + chr4_4:57006958-57006977 None:intergenic 40.0%
! CCTAGTCATCTTTTCCTCAA+TGG + chr4_4:57006967-57006986 None:intergenic 40.0%
CCATTGAGGAAAAGATGACT+AGG - chr4_4:57006964-57006983 Msa0689800:CDS 40.0%
! GCTGAGATTAGTTGTGTTGA+CGG + chr4_4:57005113-57005132 None:intergenic 40.0%
CATATCGTTCAACCGTTTCT+AGG - chr4_4:57005185-57005204 Msa0689800:three_prime_UTR 40.0%
GAATCGTGAAACCCTAGAAA+CGG + chr4_4:57005200-57005219 None:intergenic 40.0%
! TAGACGAGATCTGAGATTGA+AGG + chr4_4:57005238-57005257 None:intergenic 40.0%
ATCAGCATGTAGATCTCCAT+CGG + chr4_4:57005305-57005324 None:intergenic 40.0%
! AACTTGTTCGTCTTGGTTTC+TGG - chr4_4:57005514-57005533 Msa0689800:three_prime_UTR 40.0%
! TTTTTCCTAAGTCAAGGCTC+TGG - chr4_4:57005562-57005581 Msa0689800:three_prime_UTR 40.0%
!!! CTCTGGAGGTATTTTTTTGC+AGG - chr4_4:57005579-57005598 Msa0689800:three_prime_UTR 40.0%
!!! TTTTTTTGCAGGTATGGTGG+TGG - chr4_4:57005590-57005609 Msa0689800:three_prime_UTR 40.0%
GAATCGCCATATTTCAACAC+CGG + chr4_4:57005637-57005656 None:intergenic 40.0%
TAGATCTCAGCGGTGAATTA+TGG - chr4_4:57005698-57005717 Msa0689800:three_prime_UTR 40.0%
GATGAAGATTGGAAGGTCTT+TGG - chr4_4:57005785-57005804 Msa0689800:three_prime_UTR 40.0%
TGAAGATTGGAAGGTCTTTG+GGG - chr4_4:57005787-57005806 Msa0689800:three_prime_UTR 40.0%
ATAAGGAAAGGAACAAGGCA+AGG + chr4_4:57006036-57006055 None:intergenic 40.0%
CTAAAGCAGAAGTTGTATCG+GGG - chr4_4:57006454-57006473 Msa0689800:three_prime_UTR 40.0%
GTAAACTATGGTTTCCGCTT+TGG - chr4_4:57006542-57006561 Msa0689800:three_prime_UTR 40.0%
ACAAAGTACAACAGCCAAAG+CGG + chr4_4:57006559-57006578 None:intergenic 40.0%
! GATTTATCGACTAGCACCAA+TGG - chr4_4:57006697-57006716 Msa0689800:three_prime_UTR 40.0%
ACTAAGGTGAAGATGACTTC+GGG - chr4_4:57006804-57006823 Msa0689800:CDS 40.0%
! CTTTTCCTCAATGGATGAAG+AGG + chr4_4:57006958-57006977 None:intergenic 40.0%
! CCTAGTCATCTTTTCCTCAA+TGG + chr4_4:57006967-57006986 None:intergenic 40.0%
CCATTGAGGAAAAGATGACT+AGG - chr4_4:57006964-57006983 Msa0689800:CDS 40.0%
! GATTAGTTGTGTTGACGGTG+TGG + chr4_4:57005108-57005127 None:intergenic 45.0%
GATGGAGATCTACATGCTGA+TGG - chr4_4:57005304-57005323 Msa0689800:three_prime_UTR 45.0%
!!! TGCTGATGGTGGTTTTGTTC+AGG - chr4_4:57005318-57005337 Msa0689800:three_prime_UTR 45.0%
! AGGTGTGAACTTGTTCGTCT+TGG - chr4_4:57005507-57005526 Msa0689800:three_prime_UTR 45.0%
CCTTGAGGAGATCGTAAATC+CGG - chr4_4:57005615-57005634 Msa0689800:three_prime_UTR 45.0%
TTCCGAGTTGTAGATCTCAG+CGG - chr4_4:57005688-57005707 Msa0689800:three_prime_UTR 45.0%
GAAGATTGGAAGGTCTTTGG+GGG - chr4_4:57005788-57005807 Msa0689800:three_prime_UTR 45.0%
! TCTTTGGGGGTGGGATATAA+TGG - chr4_4:57005801-57005820 Msa0689800:three_prime_UTR 45.0%
!! GGGTGGGATATAATGGATGT+AGG - chr4_4:57005808-57005827 Msa0689800:three_prime_UTR 45.0%
!!! TGGTTTTGAGAGAGATCGCA+CGG - chr4_4:57005971-57005990 Msa0689800:intron 45.0%
TTAGCTTCGATGAATCCGTC+CGG + chr4_4:57006103-57006122 None:intergenic 45.0%
GTCATCCTCTTCATCCATTG+AGG - chr4_4:57006950-57006969 Msa0689800:CDS 45.0%
! GATTAGTTGTGTTGACGGTG+TGG + chr4_4:57005108-57005127 None:intergenic 45.0%
GATGGAGATCTACATGCTGA+TGG - chr4_4:57005304-57005323 Msa0689800:three_prime_UTR 45.0%
!!! TGCTGATGGTGGTTTTGTTC+AGG - chr4_4:57005318-57005337 Msa0689800:three_prime_UTR 45.0%
! AGGTGTGAACTTGTTCGTCT+TGG - chr4_4:57005507-57005526 Msa0689800:three_prime_UTR 45.0%
CCTTGAGGAGATCGTAAATC+CGG - chr4_4:57005615-57005634 Msa0689800:three_prime_UTR 45.0%
TTCCGAGTTGTAGATCTCAG+CGG - chr4_4:57005688-57005707 Msa0689800:three_prime_UTR 45.0%
GAAGATTGGAAGGTCTTTGG+GGG - chr4_4:57005788-57005807 Msa0689800:three_prime_UTR 45.0%
! TCTTTGGGGGTGGGATATAA+TGG - chr4_4:57005801-57005820 Msa0689800:three_prime_UTR 45.0%
!! GGGTGGGATATAATGGATGT+AGG - chr4_4:57005808-57005827 Msa0689800:three_prime_UTR 45.0%
!!! TGGTTTTGAGAGAGATCGCA+CGG - chr4_4:57005971-57005990 Msa0689800:intron 45.0%
TTAGCTTCGATGAATCCGTC+CGG + chr4_4:57006103-57006122 None:intergenic 45.0%
GTCATCCTCTTCATCCATTG+AGG - chr4_4:57006950-57006969 Msa0689800:CDS 45.0%
GGAGATCTACATGCTGATGG+TGG - chr4_4:57005307-57005326 Msa0689800:three_prime_UTR 50.0%
GCATCAGATCTACGATCCAG+AGG - chr4_4:57005487-57005506 Msa0689800:three_prime_UTR 50.0%
GACGAACAAGTTCACACCTC+TGG + chr4_4:57005506-57005525 None:intergenic 50.0%
! TTCCTAAGTCAAGGCTCTGG+AGG - chr4_4:57005565-57005584 Msa0689800:three_prime_UTR 50.0%
TACCTCCAGAGCCTTGACTT+AGG + chr4_4:57005570-57005589 None:intergenic 50.0%
CCGGATTTACGATCTCCTCA+AGG + chr4_4:57005618-57005637 None:intergenic 50.0%
CACCGCTGAGATCTACAACT+CGG + chr4_4:57005693-57005712 None:intergenic 50.0%
! ATTGGAAGGTCTTTGGGGGT+GGG - chr4_4:57005792-57005811 Msa0689800:three_prime_UTR 50.0%
TTCATACGCTCAGCGCATCA+AGG + chr4_4:57005856-57005875 None:intergenic 50.0%
TTGATGCGCTGAGCGTATGA+AGG - chr4_4:57005855-57005874 Msa0689800:three_prime_UTR 50.0%
CGGATGACAAGATCACTCTC+AGG + chr4_4:57005888-57005907 None:intergenic 50.0%
!!! GGTTTTGAGAGAGATCGCAC+GGG - chr4_4:57005972-57005991 Msa0689800:intron 50.0%
!!! GTTTTGAGAGAGATCGCACG+GGG - chr4_4:57005973-57005992 Msa0689800:intron 50.0%
ACACACACGAGAGAAGATCC+CGG + chr4_4:57006006-57006025 None:intergenic 50.0%
TAGCTTCGATGAATCCGTCC+GGG + chr4_4:57006102-57006121 None:intergenic 50.0%
! TATCGACTAGCACCAATGGG+AGG - chr4_4:57006701-57006720 Msa0689800:three_prime_UTR 50.0%
ACTAGCACCAATGGGAGGAA+TGG - chr4_4:57006706-57006725 Msa0689800:three_prime_UTR 50.0%
CTCTCTTCCATTCCTCCCAT+TGG + chr4_4:57006716-57006735 None:intergenic 50.0%
GGAGATCTACATGCTGATGG+TGG - chr4_4:57005307-57005326 Msa0689800:three_prime_UTR 50.0%
GCATCAGATCTACGATCCAG+AGG - chr4_4:57005487-57005506 Msa0689800:three_prime_UTR 50.0%
GACGAACAAGTTCACACCTC+TGG + chr4_4:57005506-57005525 None:intergenic 50.0%
! TTCCTAAGTCAAGGCTCTGG+AGG - chr4_4:57005565-57005584 Msa0689800:three_prime_UTR 50.0%
TACCTCCAGAGCCTTGACTT+AGG + chr4_4:57005570-57005589 None:intergenic 50.0%
CCGGATTTACGATCTCCTCA+AGG + chr4_4:57005618-57005637 None:intergenic 50.0%
CACCGCTGAGATCTACAACT+CGG + chr4_4:57005693-57005712 None:intergenic 50.0%
! ATTGGAAGGTCTTTGGGGGT+GGG - chr4_4:57005792-57005811 Msa0689800:three_prime_UTR 50.0%
TTCATACGCTCAGCGCATCA+AGG + chr4_4:57005856-57005875 None:intergenic 50.0%
TTGATGCGCTGAGCGTATGA+AGG - chr4_4:57005855-57005874 Msa0689800:three_prime_UTR 50.0%
CGGATGACAAGATCACTCTC+AGG + chr4_4:57005888-57005907 None:intergenic 50.0%
!!! GGTTTTGAGAGAGATCGCAC+GGG - chr4_4:57005972-57005991 Msa0689800:intron 50.0%
!!! GTTTTGAGAGAGATCGCACG+GGG - chr4_4:57005973-57005992 Msa0689800:intron 50.0%
ACACACACGAGAGAAGATCC+CGG + chr4_4:57006006-57006025 None:intergenic 50.0%
TAGCTTCGATGAATCCGTCC+GGG + chr4_4:57006102-57006121 None:intergenic 50.0%
! TATCGACTAGCACCAATGGG+AGG - chr4_4:57006701-57006720 Msa0689800:three_prime_UTR 50.0%
ACTAGCACCAATGGGAGGAA+TGG - chr4_4:57006706-57006725 Msa0689800:three_prime_UTR 50.0%
CTCTCTTCCATTCCTCCCAT+TGG + chr4_4:57006716-57006735 None:intergenic 50.0%
!! GGTATGGTGGTGGATCCTTG+AGG - chr4_4:57005600-57005619 Msa0689800:three_prime_UTR 55.0%
! GATTGGAAGGTCTTTGGGGG+TGG - chr4_4:57005791-57005810 Msa0689800:three_prime_UTR 55.0%
CATCCGACCTTTGCCATGTC+AGG - chr4_4:57005902-57005921 Msa0689800:intron 55.0%
GCACCTGACATGGCAAAGGT+CGG + chr4_4:57005908-57005927 None:intergenic 55.0%
AAGCGCACCTGACATGGCAA+AGG + chr4_4:57005912-57005931 None:intergenic 55.0%
CACACACGAGAGAAGATCCC+GGG + chr4_4:57006005-57006024 None:intergenic 55.0%
GGGATCTTCTCTCGTGTGTG+TGG - chr4_4:57006005-57006024 Msa0689800:intron 55.0%
TGTGAGTAGAGCGAGATGCG+TGG + chr4_4:57006074-57006093 None:intergenic 55.0%
CGCTCTACTCACAATAGCCC+CGG - chr4_4:57006081-57006100 Msa0689800:intron 55.0%
CTACTCACAATAGCCCCGGA+CGG - chr4_4:57006085-57006104 Msa0689800:intron 55.0%
AGCTTCGATGAATCCGTCCG+GGG + chr4_4:57006101-57006120 None:intergenic 55.0%
!! GGTATGGTGGTGGATCCTTG+AGG - chr4_4:57005600-57005619 Msa0689800:three_prime_UTR 55.0%
! GATTGGAAGGTCTTTGGGGG+TGG - chr4_4:57005791-57005810 Msa0689800:three_prime_UTR 55.0%
CATCCGACCTTTGCCATGTC+AGG - chr4_4:57005902-57005921 Msa0689800:intron 55.0%
GCACCTGACATGGCAAAGGT+CGG + chr4_4:57005908-57005927 None:intergenic 55.0%
AAGCGCACCTGACATGGCAA+AGG + chr4_4:57005912-57005931 None:intergenic 55.0%
CACACACGAGAGAAGATCCC+GGG + chr4_4:57006005-57006024 None:intergenic 55.0%
GGGATCTTCTCTCGTGTGTG+TGG - chr4_4:57006005-57006024 Msa0689800:intron 55.0%
TGTGAGTAGAGCGAGATGCG+TGG + chr4_4:57006074-57006093 None:intergenic 55.0%
CGCTCTACTCACAATAGCCC+CGG - chr4_4:57006081-57006100 Msa0689800:intron 55.0%
CTACTCACAATAGCCCCGGA+CGG - chr4_4:57006085-57006104 Msa0689800:intron 55.0%
AGCTTCGATGAATCCGTCCG+GGG + chr4_4:57006101-57006120 None:intergenic 55.0%
CCAAGCAAGCGCACCTGACA+TGG + chr4_4:57005918-57005937 None:intergenic 60.0%
CCATGTCAGGTGCGCTTGCT+TGG - chr4_4:57005915-57005934 Msa0689800:intron 60.0%
! GATCGCACGGGGTTTTTGCC+CGG - chr4_4:57005984-57006003 Msa0689800:intron 60.0%
! ATCGCACGGGGTTTTTGCCC+GGG - chr4_4:57005985-57006004 Msa0689800:intron 60.0%
CCAAGCAAGCGCACCTGACA+TGG + chr4_4:57005918-57005937 None:intergenic 60.0%
CCATGTCAGGTGCGCTTGCT+TGG - chr4_4:57005915-57005934 Msa0689800:intron 60.0%
! GATCGCACGGGGTTTTTGCC+CGG - chr4_4:57005984-57006003 Msa0689800:intron 60.0%
! ATCGCACGGGGTTTTTGCCC+GGG - chr4_4:57005985-57006004 Msa0689800:intron 60.0%
GTCAGGTGCGCTTGCTTGGC+AGG - chr4_4:57005919-57005938 Msa0689800:intron 65.0%
GTCAGGTGCGCTTGCTTGGC+AGG - chr4_4:57005919-57005938 Msa0689800:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 57005104 57007363 57005104 ID=Msa0689800;Name=Msa0689800
chr4_4 mRNA 57005104 57007363 57005104 ID=Msa0689800-mRNA-1;Parent=Msa0689800;Name=Msa0689800-mRNA-1;_AED=0.12;_eAED=0.12;_QI=201|0.5|0.6|1|0.25|0.2|5|1241|66
chr4_4 exon 57005104 57005880 57005104 ID=Msa0689800-mRNA-1:exon:15203;Parent=Msa0689800-mRNA-1
chr4_4 exon 57006325 57006866 57006325 ID=Msa0689800-mRNA-1:exon:15202;Parent=Msa0689800-mRNA-1
chr4_4 exon 57006881 57006889 57006881 ID=Msa0689800-mRNA-1:exon:15201;Parent=Msa0689800-mRNA-1
chr4_4 exon 57006927 57007005 57006927 ID=Msa0689800-mRNA-1:exon:15200;Parent=Msa0689800-mRNA-1
chr4_4 exon 57007128 57007363 57007128 ID=Msa0689800-mRNA-1:exon:15199;Parent=Msa0689800-mRNA-1
chr4_4 five_prime_UTR 57007163 57007363 57007163 ID=Msa0689800-mRNA-1:five_prime_utr;Parent=Msa0689800-mRNA-1
chr4_4 CDS 57007128 57007162 57007128 ID=Msa0689800-mRNA-1:cds;Parent=Msa0689800-mRNA-1
chr4_4 CDS 57006927 57007005 57006927 ID=Msa0689800-mRNA-1:cds;Parent=Msa0689800-mRNA-1
chr4_4 CDS 57006881 57006889 57006881 ID=Msa0689800-mRNA-1:cds;Parent=Msa0689800-mRNA-1
chr4_4 CDS 57006789 57006866 57006789 ID=Msa0689800-mRNA-1:cds;Parent=Msa0689800-mRNA-1
chr4_4 three_prime_UTR 57006325 57006788 57006325 ID=Msa0689800-mRNA-1:three_prime_utr;Parent=Msa0689800-mRNA-1
chr4_4 three_prime_UTR 57005104 57005880 57005104 ID=Msa0689800-mRNA-1:three_prime_utr;Parent=Msa0689800-mRNA-1
Gene Sequence

>Msa0689800

ATGGAGATCTACATGCTGATGGTGGTTTTGTTCAGAAATTTCATAGATCTGAATCTTCGTGCATCAGATCTACGATCCAGAGGTGTGAACTTGTTCGTCTTGGTTTCTGGATCCGCTCTGGAGGTATGGTGGTGGATCCTTGAGGAGATCGTAAATCCGGTGTTGAAATATGGCGATTCAACTGTTGATGATGATTATTGA

Protein sequence

>Msa0689800

MEIYMLMVVLFRNFIDLNLRASDLRSRGVNLFVLVSGSALEVWWWILEEIVNPVLKYGDSTVDDDY*