AlfalfaGEDB | Msa0689800

M. sativa cultivar zhongmu-4 / Msa0689800

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0689800	AES94947.2	72.308	65	17	1	1	65	1	64	2.56e-16	77.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0689800	G7KDJ6	72.308	65	17	1	1	65	1	64	1.22e-16	77.4

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa0689800	-0.812603	3.901870e-51	-8.615850e-47
Msa0006070	Msa0689800	0.816814	4.554295e-52	-8.615850e-47
Msa0011170	Msa0689800	0.859404	4.234892e-63	-8.615850e-47
Msa0014710	Msa0689800	0.817813	2.714111e-52	-8.615850e-47
Msa0015120	Msa0689800	0.809249	2.077359e-50	-8.615850e-47
Msa0015610	Msa0689800	0.830437	2.938715e-55	-8.615850e-47
Msa0017070	Msa0689800	0.802306	5.973052e-49	-8.615850e-47
Msa0017510	Msa0689800	0.816986	4.167550e-52	-8.615850e-47
Msa0020930	Msa0689800	0.836397	9.587709e-57	-8.615850e-47
Msa0023090	Msa0689800	0.832839	7.515534e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0689800	MtrunA17_Chr5g0403961	63.077	65	14	2	1	65	1	55	8.51e-19	73.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 84 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCATTATAAAAGAAA+GGG	0.480170	4_4:-57007299	Msa0689800:five_prime_UTR
AAAGAATAAGGAAAGGAACA+AGG	0.645363	4_4:+57006407	None:intergenic
AAATGCAAATACAGGTTCTC+CGG	0.505366	4_4:+57005257	None:intergenic
AAATTAGTAGATCATGTATC+AGG	0.402589	4_4:-57005840	Msa0689800:three_prime_UTR
AACGGTTGAACGATATGAAT+TGG	0.363820	4_4:+57007266	None:intergenic
AACTTGTTCGTCTTGGTTTC+TGG	0.084390	4_4:-57006931	Msa0689800:CDS
AAGCGCACCTGACATGGCAA+AGG	0.629352	4_4:+57006536	None:intergenic
AATCACAATAATGATTGAAG+AGG	0.555949	4_4:+57005667	None:intergenic
AATCTCAAGACTCAATAACA+AGG	0.690550	4_4:-57006324	Msa0689800:intron
AATCTTGAATCAATAAAGGT+TGG	0.501834	4_4:+57007175	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGAATCAATAAAGGTTGGA+AGG	+	chr4_4:57005269-57005288	None:intergenic	30.0%
CAAGATTAATATAGATCCGA+TGG	-	chr4_4:57005286-57005305	Msa0689800:three_prime_UTR	30.0%
TGGATGTAGGATATAACTTT+AGG	-	chr4_4:57005821-57005840	Msa0689800:three_prime_UTR	30.0%
AAAGAATAAGGAAAGGAACA+AGG	+	chr4_4:57006041-57006060	None:intergenic	30.0%
AATCTCAAGACTCAATAACA+AGG	-	chr4_4:57006121-57006140	Msa0689800:intron	30.0%
GACAAGCATTTATGAACAAA+AGG	+	chr4_4:57006518-57006537	None:intergenic	30.0%
TGCTTGTCAAATGTAAACTA+TGG	-	chr4_4:57006530-57006549	Msa0689800:three_prime_UTR	30.0%
ACAATAATGATTGAAGAGGA+TGG	+	chr4_4:57006777-57006796	None:intergenic	30.0%
AAAAAATGTAATCAAGGGAG+GGG	+	chr4_4:57007111-57007130	None:intergenic	30.0%
TTGAATCAATAAAGGTTGGA+AGG	+	chr4_4:57005269-57005288	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	57005104	57007363	57005104	ID=Msa0689800;Name=Msa0689800
chr4_4	mRNA	57005104	57007363	57005104	ID=Msa0689800-mRNA-1;Parent=Msa0689800;Name=Msa0689800-mRNA-1;_AED=0.12;_eAED=0.12;_QI=201\|0.5\|0.6\|1\|0.25\|0.2\|5\|1241\|66
chr4_4	exon	57005104	57005880	57005104	ID=Msa0689800-mRNA-1:exon:15203;Parent=Msa0689800-mRNA-1
chr4_4	exon	57006325	57006866	57006325	ID=Msa0689800-mRNA-1:exon:15202;Parent=Msa0689800-mRNA-1
chr4_4	exon	57006881	57006889	57006881	ID=Msa0689800-mRNA-1:exon:15201;Parent=Msa0689800-mRNA-1
chr4_4	exon	57006927	57007005	57006927	ID=Msa0689800-mRNA-1:exon:15200;Parent=Msa0689800-mRNA-1
chr4_4	exon	57007128	57007363	57007128	ID=Msa0689800-mRNA-1:exon:15199;Parent=Msa0689800-mRNA-1
chr4_4	five_prime_UTR	57007163	57007363	57007163	ID=Msa0689800-mRNA-1:five_prime_utr;Parent=Msa0689800-mRNA-1
chr4_4	CDS	57007128	57007162	57007128	ID=Msa0689800-mRNA-1:cds;Parent=Msa0689800-mRNA-1
chr4_4	CDS	57006927	57007005	57006927	ID=Msa0689800-mRNA-1:cds;Parent=Msa0689800-mRNA-1
chr4_4	CDS	57006881	57006889	57006881	ID=Msa0689800-mRNA-1:cds;Parent=Msa0689800-mRNA-1
chr4_4	CDS	57006789	57006866	57006789	ID=Msa0689800-mRNA-1:cds;Parent=Msa0689800-mRNA-1
chr4_4	three_prime_UTR	57006325	57006788	57006325	ID=Msa0689800-mRNA-1:three_prime_utr;Parent=Msa0689800-mRNA-1
chr4_4	three_prime_UTR	57005104	57005880	57005104	ID=Msa0689800-mRNA-1:three_prime_utr;Parent=Msa0689800-mRNA-1

Gene Sequence	>Msa0689800 ATGGAGATCTACATGCTGATGGTGGTTTTGTTCAGAAATTTCATAGATCTGAATCTTCGTGCATCAGATCTACGATCCAGAGGTGTGAACTTGTTCGTCTTGGTTTCTGGATCCGCTCTGGAGGTATGGTGGTGGATCCTTGAGGAGATCGTAAATCCGGTGTTGAAATATGGCGATTCAACTGTTGATGATGATTATTGA
Protein sequence	>Msa0689800 MEIYMLMVVLFRNFIDLNLRASDLRSRGVNLFVLVSGSALEVWWWILEEIVNPVLKYGDSTVDDDY*