Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0229990 | AES89414.1 | 98.834 | 343 | 4 | 0 | 8 | 350 | 608 | 950 | 0.0 | 678 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0229990 | sp|P36428|SYA_ARATH | 71.802 | 344 | 96 | 1 | 8 | 350 | 660 | 1003 | 7.06e-152 | 455 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0229990 | A0A396IBC8 | 98.834 | 343 | 4 | 0 | 8 | 350 | 647 | 989 | 0.0 | 678 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020930 | Msa0229990 | 0.832369 | 9.833479e-56 | -8.615850e-47 |
| Msa0021510 | Msa0229990 | 0.822719 | 2.038021e-53 | -8.615850e-47 |
| Msa0029270 | Msa0229990 | 0.816117 | 6.522882e-52 | -8.615850e-47 |
| Msa0032090 | Msa0229990 | 0.813215 | 2.864507e-51 | -8.615850e-47 |
| Msa0032430 | Msa0229990 | 0.824788 | 6.677610e-54 | -8.615850e-47 |
| Msa0037570 | Msa0229990 | -0.811199 | 7.890701e-51 | -8.615850e-47 |
| Msa0045790 | Msa0229990 | 0.804328 | 2.276960e-49 | -8.615850e-47 |
| Msa0046160 | Msa0229990 | 0.808117 | 3.626104e-50 | -8.615850e-47 |
| Msa0054480 | Msa0229990 | 0.814657 | 1.377912e-51 | -8.615850e-47 |
| Msa0079380 | Msa0229990 | 0.829035 | 6.449087e-55 | -8.615850e-47 |
| Msa0086760 | Msa0229990 | 0.805016 | 1.636443e-49 | -8.615850e-47 |
| Msa0114060 | Msa0229990 | 0.833764 | 4.420812e-56 | -8.615850e-47 |
| Msa0116770 | Msa0229990 | 0.815250 | 1.017726e-51 | -8.615850e-47 |
| Msa0119960 | Msa0229990 | 0.811308 | 7.472635e-51 | -8.615850e-47 |
| Msa0127050 | Msa0229990 | 0.823623 | 1.254045e-53 | -8.615850e-47 |
| Msa0159930 | Msa0229990 | 0.818528 | 1.869944e-52 | -8.615850e-47 |
| Msa0160550 | Msa0229990 | 0.803185 | 3.932123e-49 | -8.615850e-47 |
| Msa0165210 | Msa0229990 | 0.819219 | 1.302939e-52 | -8.615850e-47 |
| Msa0165220 | Msa0229990 | 0.801486 | 8.803761e-49 | -8.615850e-47 |
| Msa0169310 | Msa0229990 | 0.815682 | 8.159541e-52 | -8.615850e-47 |
| Msa0172070 | Msa0229990 | 0.826441 | 2.708754e-54 | -8.615850e-47 |
| Msa0220580 | Msa0229990 | 0.807367 | 5.232101e-50 | -8.615850e-47 |
| Msa0222890 | Msa0229990 | 0.816765 | 4.670567e-52 | -8.615850e-47 |
| Msa0229990 | Msa0260680 | 0.807568 | 4.744412e-50 | -8.615850e-47 |
| Msa0229990 | Msa0262510 | 0.810623 | 1.051551e-50 | -8.615850e-47 |
| Msa0229990 | Msa0267150 | 0.825563 | 4.378190e-54 | -8.615850e-47 |
| Msa0229990 | Msa0280090 | 0.831005 | 2.132212e-55 | -8.615850e-47 |
| Msa0229990 | Msa0283450 | 0.802068 | 6.685726e-49 | -8.615850e-47 |
| Msa0229990 | Msa0309770 | 0.843204 | 1.617920e-58 | -8.615850e-47 |
| Msa0229990 | Msa0318980 | 0.811794 | 5.858242e-51 | -8.615850e-47 |
| Msa0229990 | Msa0333030 | 0.811578 | 6.526876e-51 | -8.615850e-47 |
| Msa0229990 | Msa0340470 | 0.813190 | 2.901014e-51 | -8.615850e-47 |
| Msa0229990 | Msa0366240 | 0.808354 | 3.227434e-50 | -8.615850e-47 |
| Msa0229990 | Msa0383800 | 0.804607 | 1.991563e-49 | -8.615850e-47 |
| Msa0229990 | Msa0386090 | 0.800079 | 1.705066e-48 | -8.615850e-47 |
| Msa0229990 | Msa0397750 | 0.819297 | 1.250553e-52 | -8.615850e-47 |
| Msa0229990 | Msa0402290 | 0.805049 | 1.610041e-49 | -8.615850e-47 |
| Msa0229990 | Msa0410650 | 0.809160 | 2.171087e-50 | -8.615850e-47 |
| Msa0229990 | Msa0424790 | 0.803453 | 3.461237e-49 | -8.615850e-47 |
| Msa0229990 | Msa0428080 | 0.800929 | 1.144376e-48 | -8.615850e-47 |
| Msa0229990 | Msa0433640 | 0.802008 | 6.878169e-49 | -8.615850e-47 |
| Msa0229990 | Msa0440750 | 0.812827 | 3.484909e-51 | -8.615850e-47 |
| Msa0229990 | Msa0470690 | 0.811938 | 5.450326e-51 | -8.615850e-47 |
| Msa0229990 | Msa0479970 | 0.810288 | 1.241849e-50 | -8.615850e-47 |
| Msa0229990 | Msa0484780 | 0.804996 | 1.652012e-49 | -8.615850e-47 |
| Msa0229990 | Msa0487800 | 0.824089 | 9.750332e-54 | -8.615850e-47 |
| Msa0229990 | Msa0507680 | 0.806928 | 6.482637e-50 | -8.615850e-47 |
| Msa0229990 | Msa0510350 | 0.805934 | 1.050251e-49 | -8.615850e-47 |
| Msa0229990 | Msa0521500 | 0.808177 | 3.520819e-50 | -8.615850e-47 |
| Msa0229990 | Msa0532350 | 0.803997 | 2.668105e-49 | -8.615850e-47 |
| Msa0229990 | Msa0545210 | 0.803697 | 3.080033e-49 | -8.615850e-47 |
| Msa0229990 | Msa0548170 | 0.801701 | 7.952533e-49 | -8.615850e-47 |
| Msa0229990 | Msa0560870 | 0.823266 | 1.519690e-53 | -8.615850e-47 |
| Msa0229990 | Msa0569200 | 0.806881 | 6.631331e-50 | -8.615850e-47 |
| Msa0229990 | Msa0571630 | 0.803107 | 4.082663e-49 | -8.615850e-47 |
| Msa0229990 | Msa0593650 | 0.801214 | 1.000758e-48 | -8.615850e-47 |
| Msa0229990 | Msa0602390 | 0.810683 | 1.020147e-50 | -8.615850e-47 |
| Msa0229990 | Msa0607050 | 0.801208 | 1.003640e-48 | -8.615850e-47 |
| Msa0229990 | Msa0610430 | 0.835905 | 1.277989e-56 | -8.615850e-47 |
| Msa0229990 | Msa0616160 | 0.805837 | 1.100722e-49 | -8.615850e-47 |
| Msa0229990 | Msa0623080 | 0.803068 | 4.159284e-49 | -8.615850e-47 |
| Msa0229990 | Msa0641670 | 0.800178 | 1.627645e-48 | -8.615850e-47 |
| Msa0229990 | Msa0643180 | 0.807876 | 4.079742e-50 | -8.615850e-47 |
| Msa0229990 | Msa0649490 | 0.803784 | 2.955579e-49 | -8.615850e-47 |
| Msa0229990 | Msa0657970 | 0.808822 | 2.563488e-50 | -8.615850e-47 |
| Msa0229990 | Msa0661650 | 0.823400 | 1.414042e-53 | -8.615850e-47 |
| Msa0229990 | Msa0663390 | 0.807683 | 4.483199e-50 | -8.615850e-47 |
| Msa0229990 | Msa0663810 | 0.811595 | 6.472474e-51 | -8.615850e-47 |
| Msa0229990 | Msa0672570 | 0.814651 | 1.381952e-51 | -8.615850e-47 |
| Msa0229990 | Msa0673460 | 0.800123 | 1.670145e-48 | -8.615850e-47 |
| Msa0229990 | Msa0681250 | 0.804617 | 1.982559e-49 | -8.615850e-47 |
| Msa0229990 | Msa0681270 | 0.818286 | 2.122345e-52 | -8.615850e-47 |
| Msa0229990 | Msa0692950 | 0.820631 | 6.193365e-53 | -8.615850e-47 |
| Msa0229990 | Msa0693380 | 0.805643 | 1.209130e-49 | -8.615850e-47 |
| Msa0229990 | Msa0698400 | 0.829573 | 4.771684e-55 | -8.615850e-47 |
| Msa0229990 | Msa0711780 | 0.817437 | 3.299847e-52 | -8.615850e-47 |
| Msa0229990 | Msa0716840 | 0.821662 | 3.583721e-53 | -8.615850e-47 |
| Msa0229990 | Msa0735170 | 0.817663 | 2.934086e-52 | -8.615850e-47 |
| Msa0229990 | Msa0737560 | 0.802878 | 4.551382e-49 | -8.615850e-47 |
| Msa0229990 | Msa0745790 | 0.800548 | 1.368942e-48 | -8.615850e-47 |
| Msa0229990 | Msa0769920 | 0.813601 | 2.356354e-51 | -8.615850e-47 |
| Msa0229990 | Msa0775190 | 0.803560 | 3.288142e-49 | -8.615850e-47 |
| Msa0229990 | Msa0779320 | 0.816186 | 6.295662e-52 | -8.615850e-47 |
| Msa0229990 | Msa0794670 | 0.812613 | 3.882852e-51 | -8.615850e-47 |
| Msa0229990 | Msa0808270 | 0.815520 | 8.864332e-52 | -8.615850e-47 |
| Msa0229990 | Msa0816700 | 0.810476 | 1.130862e-50 | -8.615850e-47 |
| Msa0229990 | Msa0820120 | 0.806316 | 8.729038e-50 | -8.615850e-47 |
| Msa0229990 | Msa0820850 | 0.802100 | 6.586328e-49 | -8.615850e-47 |
| Msa0229990 | Msa0825340 | 0.802022 | 6.833844e-49 | -8.615850e-47 |
| Msa0229990 | Msa0856910 | 0.811066 | 8.429174e-51 | -8.615850e-47 |
| Msa0229990 | Msa0861130 | 0.804248 | 2.365751e-49 | -8.615850e-47 |
| Msa0229990 | Msa0871270 | 0.818679 | 1.728652e-52 | -8.615850e-47 |
| Msa0229990 | Msa0876190 | 0.801497 | 8.756561e-49 | -8.615850e-47 |
| Msa0229990 | Msa0876200 | 0.803566 | 3.278654e-49 | -8.615850e-47 |
| Msa0229990 | Msa0878500 | 0.801478 | 8.834974e-49 | -8.615850e-47 |
| Msa0229990 | Msa0880950 | 0.800696 | 1.276835e-48 | -8.615850e-47 |
| Msa0229990 | Msa0895120 | 0.829760 | 4.298876e-55 | -8.615850e-47 |
| Msa0229990 | Msa0938220 | 0.829475 | 5.043102e-55 | -8.615850e-47 |
| Msa0229990 | Msa0945970 | 0.826092 | 3.279294e-54 | -8.615850e-47 |
| Msa0229990 | Msa0975340 | 0.805008 | 1.642513e-49 | -8.615850e-47 |
| Msa0229990 | Msa1003620 | 0.803040 | 4.214324e-49 | -8.615850e-47 |
| Msa0229990 | Msa1004840 | 0.807556 | 4.770881e-50 | -8.615850e-47 |
| Msa0229990 | Msa1014540 | 0.824576 | 7.490865e-54 | -8.615850e-47 |
| Msa0229990 | Msa1061680 | 0.807090 | 5.990196e-50 | -8.615850e-47 |
| Msa0229990 | Msa1075650 | 0.838048 | 3.624869e-57 | -8.615850e-47 |
| Msa0229990 | Msa1081980 | 0.831253 | 1.853751e-55 | -8.615850e-47 |
| Msa0229990 | Msa1082500 | 0.820490 | 6.671666e-53 | -8.615850e-47 |
| Msa0229990 | Msa1082810 | 0.807243 | 5.560000e-50 | -8.615850e-47 |
| Msa0229990 | Msa1083300 | 0.813507 | 2.471494e-51 | -8.615850e-47 |
| Msa0229990 | Msa1085200 | 0.812044 | 5.168555e-51 | -8.615850e-47 |
| Msa0229990 | Msa1100050 | 0.815647 | 8.305380e-52 | -8.615850e-47 |
| Msa0229990 | Msa1117170 | 0.833481 | 5.203179e-56 | -8.615850e-47 |
| Msa0229990 | Msa1162270 | 0.809080 | 2.257579e-50 | -8.615850e-47 |
| Msa0229990 | Msa1170410 | 0.841316 | 5.116482e-58 | -8.615850e-47 |
| Msa0229990 | Msa1228590 | 0.811463 | 6.915277e-51 | -8.615850e-47 |
| Msa0229990 | Msa1247750 | 0.807124 | 5.890854e-50 | -8.615850e-47 |
| Msa0229990 | Msa1284680 | 0.804990 | 1.657059e-49 | -8.615850e-47 |
| Msa0229990 | Msa1288550 | 0.825036 | 5.835973e-54 | -8.615850e-47 |
| Msa0229990 | Msa1296760 | 0.836318 | 1.003634e-56 | -8.615850e-47 |
| Msa0229990 | Msa1309030 | 0.801123 | 1.044744e-48 | -8.615850e-47 |
| Msa0229990 | Msa1314630 | 0.806391 | 8.414705e-50 | -8.615850e-47 |
| Msa0229990 | Msa1331000 | 0.801667 | 8.081317e-49 | -8.615850e-47 |
| Msa0229990 | Msa1359040 | 0.815584 | 8.580102e-52 | -8.615850e-47 |
| Msa0229990 | Msa1372760 | 0.803044 | 4.206945e-49 | -8.615850e-47 |
| Msa0229990 | Msa1373030 | 0.832873 | 7.370978e-56 | -8.615850e-47 |
| Msa0229990 | Msa1389800 | 0.805598 | 1.235375e-49 | -8.615850e-47 |
| Msa0229990 | Msa1392240 | 0.813607 | 2.349291e-51 | -8.615850e-47 |
| Msa0229990 | Msa1409700 | 0.800813 | 1.208457e-48 | -8.615850e-47 |
| Msa0229990 | Msa1424750 | 0.810862 | 9.331817e-51 | -8.615850e-47 |
| Msa0229990 | Msa1426030 | 0.861094 | 1.305508e-63 | -8.615850e-47 |
| Msa0229990 | Msa1427230 | 0.810186 | 1.306594e-50 | -8.615850e-47 |
| Msa0229990 | Msa1440560 | 0.809829 | 1.559305e-50 | -8.615850e-47 |
| Msa0229990 | Msa1452240 | 0.814272 | 1.676501e-51 | -8.615850e-47 |
| Msa0229990 | Msa1453910 | 0.803688 | 3.093038e-49 | -8.615850e-47 |
| Msa0229990 | Msa1457980 | 0.816366 | 5.738602e-52 | -8.615850e-47 |
| Msa0229990 | Msa1460050 | 0.813791 | 2.140877e-51 | -8.615850e-47 |
| Msa0229990 | Msa1460830 | 0.804423 | 2.175832e-49 | -8.615850e-47 |
| Msa0229990 | Msa1466540 | 0.803270 | 3.777085e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0229990 | MtrunA17_Chr4g0038011 | 98.834 | 343 | 4 | 0 | 8 | 350 | 647 | 989 | 0.0 | 678 |
| Msa0229990 | MtrunA17_Chr4g0038031 | 81.579 | 190 | 35 | 0 | 160 | 349 | 445 | 634 | 3.41e-87 | 275 |
| Msa0229990 | MtrunA17_Chr3g0145961 | 33.333 | 204 | 116 | 3 | 7 | 210 | 671 | 854 | 1.42e-24 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0229990 | AT1G50200.1 | 71.802 | 344 | 96 | 1 | 8 | 350 | 660 | 1003 | 7.17e-153 | 455 |
| Msa0229990 | AT1G50200.2 | 70.170 | 352 | 96 | 2 | 8 | 350 | 660 | 1011 | 5.14e-150 | 448 |
| Msa0229990 | AT5G22800.2 | 33.333 | 207 | 112 | 4 | 8 | 205 | 694 | 883 | 5.23e-21 | 95.1 |
| Msa0229990 | AT5G22800.1 | 41.007 | 139 | 64 | 3 | 8 | 145 | 669 | 790 | 5.74e-21 | 94.7 |
Find 83 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCAGATTAATAAATTAAT+TGG | 0.176205 | 2_2:-1747675 | None:intergenic |
| GAAGAACAATAGATCCTTTC+TGG | 0.199149 | 2_2:-1744168 | None:intergenic |
| CATTACAGAGTGTGCTTTGA+TGG | 0.251134 | 2_2:+1747742 | Msa0229990:three_prime_UTR |
| TTCCAATTAATTTATTAATC+TGG | 0.264222 | 2_2:+1747673 | Msa0229990:three_prime_UTR |
| TGAGCAAATTCAAGCTGAAT+TGG | 0.318288 | 2_2:+1744345 | Msa0229990:CDS |
| CCTCTCGTGTGTTTGAGATA+TGG | 0.330074 | 2_2:-1744709 | None:intergenic |
| ACTGGATTGATTGAATTAGA+AGG | 0.332992 | 2_2:+1747816 | Msa0229990:three_prime_UTR |
| CTGTTGATGCTGATTCATTA+AGG | 0.342518 | 2_2:+1744302 | Msa0229990:CDS |
| CCCCTTCTAGTTCAATTTCA+CGG | 0.349356 | 2_2:-1747640 | None:intergenic |
| GACCAAGATTGCCCTACTTC+AGG | 0.355901 | 2_2:+1746087 | Msa0229990:CDS |
| TGTTCAAGTGTAATAGCAAC+TGG | 0.375428 | 2_2:+1747798 | Msa0229990:three_prime_UTR |
| TGCTTCTGATGCAATGAAAA+TGG | 0.378251 | 2_2:+1744808 | Msa0229990:CDS |
| AGAATGGCTGAGTAATGCTT+TGG | 0.394510 | 2_2:+1746708 | Msa0229990:CDS |
| ATCCGTGAAATTGAACTAGA+AGG | 0.401585 | 2_2:+1747638 | Msa0229990:exon |
| GAATGGCTGAGTAATGCTTT+GGG | 0.404215 | 2_2:+1746709 | Msa0229990:CDS |
| CCAACTGACACAACTCTAAC+CGG | 0.410379 | 2_2:-1744525 | None:intergenic |
| TACCTGAAGTAGGGCAATCT+TGG | 0.411861 | 2_2:-1746089 | None:intergenic |
| CTCTCGTGTGTTTGAGATAT+GGG | 0.417253 | 2_2:-1744708 | None:intergenic |
| CTTAATGAATCAGCATCAAC+AGG | 0.436466 | 2_2:-1744301 | None:intergenic |
| ATTTCAGCTTTCTTAGCTGC+AGG | 0.437519 | 2_2:-1746061 | None:intergenic |
| GATGAAGCGGCTAAGCTAGA+AGG | 0.439209 | 2_2:+1744854 | Msa0229990:CDS |
| GACACAACTCTAACCGGATC+AGG | 0.445491 | 2_2:-1744519 | None:intergenic |
| CATCATATAATACCTGAAGT+AGG | 0.455474 | 2_2:-1746099 | None:intergenic |
| AGAAGGAAGTTTGCTGGAAG+AGG | 0.463523 | 2_2:+1744871 | Msa0229990:CDS |
| GTGCCGGAGAAAGGAGATAA+AGG | 0.472153 | 2_2:+1746670 | Msa0229990:CDS |
| GGAAAAGGAGGTCTTGCAAC+GGG | 0.472528 | 2_2:+1746757 | Msa0229990:CDS |
| GGGAGATGTGGTAAAGGAAA+AGG | 0.476017 | 2_2:+1746742 | Msa0229990:CDS |
| TGCCGATGCCAAGCGTATCA+AGG | 0.478205 | 2_2:+1744393 | Msa0229990:CDS |
| AATGTAGGTCTATCCTGATC+CGG | 0.487244 | 2_2:+1744506 | Msa0229990:intron |
| ATGCTTTGGGGCCACTGAAA+GGG | 0.487479 | 2_2:+1746722 | Msa0229990:CDS |
| TAAGCTAGAAGGAAGTTTGC+TGG | 0.488518 | 2_2:+1744865 | Msa0229990:CDS |
| TCCGTGAAATTGAACTAGAA+GGG | 0.488876 | 2_2:+1747639 | Msa0229990:exon |
| TGATTTCATATGACGAATGC+AGG | 0.491087 | 2_2:+1744121 | None:intergenic |
| TGTAGTGTGTGCTGGGGTGC+CGG | 0.494475 | 2_2:+1746654 | Msa0229990:CDS |
| TTACCTTTATCTCCTTTCTC+CGG | 0.495540 | 2_2:-1746673 | None:intergenic |
| TGCATATCTCACGTTAATGT+TGG | 0.495561 | 2_2:+1746358 | Msa0229990:CDS |
| TTGTGACAGCTGTTATTCTA+CGG | 0.496737 | 2_2:-1744778 | None:intergenic |
| GCTGAGGAGGGAATTGCTAA+AGG | 0.500043 | 2_2:+1744752 | Msa0229990:CDS |
| TGTGCTGGGGTGCCGGAGAA+AGG | 0.514670 | 2_2:+1746661 | Msa0229990:CDS |
| AACAAAGCTGTAGTGTGTGC+TGG | 0.518252 | 2_2:+1746646 | Msa0229990:CDS |
| CTGGATTGATTGAATTAGAA+GGG | 0.518891 | 2_2:+1747817 | Msa0229990:three_prime_UTR |
| ACGAATGCAGGAAGTACTCT+TGG | 0.521228 | 2_2:+1744133 | Msa0229990:CDS |
| AGGAGGTCTTGCAACGGGAC+AGG | 0.521507 | 2_2:+1746762 | Msa0229990:CDS |
| CAGAGTGTGCTTTGATGGCA+AGG | 0.522222 | 2_2:+1747747 | Msa0229990:three_prime_UTR |
| GAAAGGAGATAAAGGTAAGC+TGG | 0.527245 | 2_2:+1746678 | Msa0229990:CDS |
| ACCCTTGATACGCTTGGCAT+CGG | 0.527787 | 2_2:-1744395 | None:intergenic |
| CCGGTTAGAGTTGTGTCAGT+TGG | 0.528364 | 2_2:+1744525 | Msa0229990:CDS |
| TACAAAAGTCATTGATCAGA+AGG | 0.530377 | 2_2:+1746411 | Msa0229990:CDS |
| AATGCTTTGGGGCCACTGAA+AGG | 0.530573 | 2_2:+1746721 | Msa0229990:CDS |
| ATCATATAATACCTGAAGTA+GGG | 0.532869 | 2_2:-1746098 | None:intergenic |
| GCTGATCTAGCTGTTTCAGA+TGG | 0.536347 | 2_2:+1746325 | Msa0229990:CDS |
| ACAAAGCTGTAGTGTGTGCT+GGG | 0.548423 | 2_2:+1746647 | Msa0229990:CDS |
| TCGCAGACCCTTGATACGCT+TGG | 0.548676 | 2_2:-1744401 | None:intergenic |
| TTACCACATCTCCCTTTCAG+TGG | 0.549551 | 2_2:-1746733 | None:intergenic |
| ATTGATTGAATTAGAAGGGA+AGG | 0.556021 | 2_2:+1747821 | Msa0229990:three_prime_UTR |
| CTGATCTAGCTGTTTCAGAT+GGG | 0.557727 | 2_2:+1746326 | Msa0229990:CDS |
| CTGAAAGGGAGATGTGGTAA+AGG | 0.558294 | 2_2:+1746736 | Msa0229990:CDS |
| TGTAACGTTAACAGCTGAGA+AGG | 0.569754 | 2_2:+1746303 | Msa0229990:CDS |
| GCCGATGCCAAGCGTATCAA+GGG | 0.570608 | 2_2:+1744394 | Msa0229990:CDS |
| GGCAATCATGTAGACCAGAA+AGG | 0.580152 | 2_2:+1744154 | Msa0229990:CDS |
| TCTATTTCATCTGAATTGTG+TGG | 0.581871 | 2_2:+1744597 | Msa0229990:CDS |
| CTCACACGTAAATGAGGCTA+TGG | 0.583114 | 2_2:+1747596 | Msa0229990:CDS |
| AGATGCCTCACACGTAAATG+AGG | 0.584387 | 2_2:+1747590 | Msa0229990:CDS |
| TGAATTGGATGTAAATGCAA+AGG | 0.585842 | 2_2:+1744360 | Msa0229990:CDS |
| AGATGTGGTAAAGGAAAAGG+AGG | 0.595385 | 2_2:+1746745 | Msa0229990:CDS |
| CCGTGAAATTGAACTAGAAG+GGG | 0.601451 | 2_2:+1747640 | Msa0229990:exon |
| CGATGTTGCAGCAGTTCGTG+AGG | 0.602573 | 2_2:+1746384 | Msa0229990:CDS |
| TTCATCTTTGAAAAGCAATG+TGG | 0.602709 | 2_2:+1746024 | Msa0229990:CDS |
| AATGGCTGAGTAATGCTTTG+GGG | 0.604194 | 2_2:+1746710 | Msa0229990:CDS |
| TTTCGTTATCAGGGTCAGCA+AGG | 0.608732 | 2_2:-1744566 | None:intergenic |
| TGAGAAGCAAGTAGATGAAG+CGG | 0.615185 | 2_2:+1744841 | Msa0229990:CDS |
| TAAACAGGGATTGTCAGTGA+TGG | 0.616674 | 2_2:+1746600 | Msa0229990:intron |
| CATAGCCTCATTTACGTGTG+AGG | 0.628945 | 2_2:-1747595 | None:intergenic |
| ATTGGATGTAAATGCAAAGG+AGG | 0.632135 | 2_2:+1744363 | Msa0229990:CDS |
| GTAAGCTGGATGTATCAGAA+TGG | 0.647412 | 2_2:+1746692 | Msa0229990:CDS |
| GGGCCACTGAAAGGGAGATG+TGG | 0.655092 | 2_2:+1746730 | Msa0229990:CDS |
| ATTTCATCTGAATTGTGTGG+TGG | 0.658972 | 2_2:+1744600 | Msa0229990:CDS |
| AGGAAAAGGAGGTCTTGCAA+CGG | 0.669184 | 2_2:+1746756 | Msa0229990:CDS |
| CGTGAAATTGAACTAGAAGG+GGG | 0.678022 | 2_2:+1747641 | Msa0229990:exon |
| CACGAACTGCTGCAACATCG+AGG | 0.683600 | 2_2:-1746381 | None:intergenic |
| CCATATCTCAAACACACGAG+AGG | 0.696552 | 2_2:+1744709 | Msa0229990:CDS |
| GTGAAATTGAACTAGAAGGG+GGG | 0.703753 | 2_2:+1747642 | Msa0229990:exon |
| CAAAGCTGTAGTGTGTGCTG+GGG | 0.725318 | 2_2:+1746648 | Msa0229990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | - | chr2_2:1745084-1745103 | None:intergenic | 0.0% |
| !!! | ATTTAAATAATTTTTATTTT+TGG | + | chr2_2:1745308-1745327 | Msa0229990:intron | 0.0% |
| !! | AGAAATTTAAAAGAAAACAT+TGG | - | chr2_2:1744638-1744657 | None:intergenic | 15.0% |
| !!! | ATGTAATGATCTAAAATTAT+TGG | - | chr2_2:1745719-1745738 | None:intergenic | 15.0% |
| !! | TTTAATATCATAATTCTTGT+AGG | + | chr2_2:1746228-1746247 | Msa0229990:intron | 15.0% |
| !! | AATGACATAATATATGAAAT+GGG | - | chr2_2:1746798-1746817 | None:intergenic | 15.0% |
| !! | TAATGACATAATATATGAAA+TGG | - | chr2_2:1746799-1746818 | None:intergenic | 15.0% |
| !! | ATTTCATATATTATGTCATT+AGG | + | chr2_2:1746798-1746817 | Msa0229990:intron | 15.0% |
| !! | ACACAAAAATATAATTACAT+AGG | + | chr2_2:1746959-1746978 | Msa0229990:intron | 15.0% |
| !!! | TATGAACATGTTTTTTATAT+AGG | + | chr2_2:1747016-1747035 | Msa0229990:intron | 15.0% |
| !!! | TTTTATATTGAAAGAGAAAA+AGG | + | chr2_2:1747201-1747220 | Msa0229990:intron | 15.0% |
| !! | TTTATATTGAAAGAGAAAAA+GGG | + | chr2_2:1747202-1747221 | Msa0229990:intron | 15.0% |
| !!! | ATTATGTTTTGAATTTCTTA+TGG | + | chr2_2:1747405-1747424 | Msa0229990:intron | 15.0% |
| !! | TTCCAATTAATTTATTAATC+TGG | + | chr2_2:1747673-1747692 | Msa0229990:three_prime_UTR | 15.0% |
| !! | ATCCAGATTAATAAATTAAT+TGG | - | chr2_2:1747678-1747697 | None:intergenic | 15.0% |
| !!! | TGTTTAATACATGAATTTTT+AGG | + | chr2_2:1747712-1747731 | Msa0229990:three_prime_UTR | 15.0% |
| !!! | GTTTAATACATGAATTTTTA+GGG | + | chr2_2:1747713-1747732 | Msa0229990:three_prime_UTR | 15.0% |
| !!! | AAATCAAATCTCAATTTTTC+AGG | - | chr2_2:1744193-1744212 | None:intergenic | 20.0% |
| !! | ATTCGTAATAATTAGCAATT+CGG | - | chr2_2:1745033-1745052 | None:intergenic | 20.0% |
| !! | AATTGCTAATTATTACGAAT+AGG | + | chr2_2:1745033-1745052 | Msa0229990:intron | 20.0% |
| !! | AAAATCATGATCTAATATGA+AGG | + | chr2_2:1745121-1745140 | Msa0229990:intron | 20.0% |
| !! | TATAATTGAAGATGTAATGA+GGG | - | chr2_2:1745500-1745519 | None:intergenic | 20.0% |
| !!! | AATGATCTAAAATTATTGGT+GGG | - | chr2_2:1745715-1745734 | None:intergenic | 20.0% |
| !!! | TAATGATCTAAAATTATTGG+TGG | - | chr2_2:1745716-1745735 | None:intergenic | 20.0% |
| !! | GAATTATGATATTAAACTCT+AGG | - | chr2_2:1746224-1746243 | None:intergenic | 20.0% |
| !! | AAATGACATGATATATGAAA+TGG | - | chr2_2:1746847-1746866 | None:intergenic | 20.0% |
| !!! | TTCATATATCATGTCATTTA+AGG | + | chr2_2:1746848-1746867 | Msa0229990:intron | 20.0% |
| !! | AAAACATGTTCATAAAAACA+AGG | - | chr2_2:1747010-1747029 | None:intergenic | 20.0% |
| !!! | AATGATAAAAGTTGTTGTTT+AGG | - | chr2_2:1747044-1747063 | None:intergenic | 20.0% |
| !!! | ATGGTTTTCAAAATTTTGAA+TGG | + | chr2_2:1747111-1747130 | Msa0229990:intron | 20.0% |
| !!! | TTGAGATTTGATTTTTCTCA+CGG | + | chr2_2:1744199-1744218 | Msa0229990:CDS | 25.0% |
| !! | AAAGATTTTATTCACTATGC+TGG | + | chr2_2:1744264-1744283 | Msa0229990:intron | 25.0% |
| ! | TCAATATTCTGCTTTAATGT+AGG | + | chr2_2:1744491-1744510 | Msa0229990:intron | 25.0% |
| !!! | ATAACCATTTTTCGTTATCA+GGG | - | chr2_2:1744578-1744597 | None:intergenic | 25.0% |
| !!! | TCATTTTTACTCGATAATCT+AGG | + | chr2_2:1744683-1744702 | Msa0229990:intron | 25.0% |
| !! | ATGATCTAATATGAAGGTTT+TGG | + | chr2_2:1745127-1745146 | Msa0229990:intron | 25.0% |
| ! | TGTTTACACTGTTAGAATAT+GGG | + | chr2_2:1745333-1745352 | Msa0229990:intron | 25.0% |
| ! | CTATAATTGAAGATGTAATG+AGG | - | chr2_2:1745501-1745520 | None:intergenic | 25.0% |
| ! | AAAATATGATGTGTAACCAT+GGG | - | chr2_2:1745620-1745639 | None:intergenic | 25.0% |
| ! | TAAAATATGATGTGTAACCA+TGG | - | chr2_2:1745621-1745640 | None:intergenic | 25.0% |
| ! | CCTTCAAAAAAGTTACTAAA+CGG | + | chr2_2:1745681-1745700 | Msa0229990:intron | 25.0% |
| ! | ATAACCCACAAATCTTAATA+TGG | + | chr2_2:1745811-1745830 | Msa0229990:intron | 25.0% |
| ! | ACTTCCATATTAAGATTTGT+GGG | - | chr2_2:1745818-1745837 | None:intergenic | 25.0% |
| ! | TACTTCCATATTAAGATTTG+TGG | - | chr2_2:1745819-1745838 | None:intergenic | 25.0% |
| ! | ATCATATAATACCTGAAGTA+GGG | - | chr2_2:1746101-1746120 | None:intergenic | 25.0% |
| !! | AACAACTTTTATCATTCTCT+TGG | + | chr2_2:1747048-1747067 | Msa0229990:intron | 25.0% |
| ! | TTTATCATTCTCTTGGATAT+AGG | + | chr2_2:1747055-1747074 | Msa0229990:intron | 25.0% |
| ! | TATTTGAAAATTGAGCTACT+AGG | - | chr2_2:1747266-1747285 | None:intergenic | 25.0% |
| !! | GACAATCACTTAAATTTTCA+TGG | + | chr2_2:1747295-1747314 | Msa0229990:intron | 25.0% |
| ! | ATTATCACGTACTAATATGT+TGG | + | chr2_2:1747467-1747486 | Msa0229990:intron | 25.0% |
| !! | AATATGTTGGCTATTTATGA+AGG | + | chr2_2:1747480-1747499 | Msa0229990:intron | 25.0% |
| !! | ATATGTTGGCTATTTATGAA+GGG | + | chr2_2:1747481-1747500 | Msa0229990:intron | 25.0% |
| !! | ATTTGATTTTTCTCACGGTA+AGG | + | chr2_2:1744204-1744223 | Msa0229990:intron | 30.0% |
| TGAATTGGATGTAAATGCAA+AGG | + | chr2_2:1744360-1744379 | Msa0229990:CDS | 30.0% | |
| !! | GATAACCATTTTTCGTTATC+AGG | - | chr2_2:1744579-1744598 | None:intergenic | 30.0% |
| TCTATTTCATCTGAATTGTG+TGG | + | chr2_2:1744597-1744616 | Msa0229990:CDS | 30.0% | |
| TTTGTCTAAATTCTGATAGC+AGG | + | chr2_2:1744910-1744929 | Msa0229990:intron | 30.0% | |
| TACTTTCCAGTATGTTGAAT+AGG | - | chr2_2:1745155-1745174 | None:intergenic | 30.0% | |
| CTCTATTGAATTAAAGTGCA+CGG | + | chr2_2:1745197-1745216 | Msa0229990:intron | 30.0% | |
| CATATTCTAACAGTGTAAAC+AGG | - | chr2_2:1745334-1745353 | None:intergenic | 30.0% | |
| CTGTTTACACTGTTAGAATA+TGG | + | chr2_2:1745332-1745351 | Msa0229990:intron | 30.0% | |
| !! | CACACACACATTTTACTTTT+TGG | + | chr2_2:1745579-1745598 | Msa0229990:intron | 30.0% |
| !!! | CCGTTTAGTAACTTTTTTGA+AGG | - | chr2_2:1745684-1745703 | None:intergenic | 30.0% |
| AGAAAAGTCACTTAAGAACT+AGG | - | chr2_2:1745775-1745794 | None:intergenic | 30.0% | |
| GAAACTTTCTGTGACAAAAA+GGG | - | chr2_2:1746007-1746026 | None:intergenic | 30.0% | |
| TGAAACTTTCTGTGACAAAA+AGG | - | chr2_2:1746008-1746027 | None:intergenic | 30.0% | |
| ! | TTCATCTTTGAAAAGCAATG+TGG | + | chr2_2:1746024-1746043 | Msa0229990:CDS | 30.0% |
| CATCATATAATACCTGAAGT+AGG | - | chr2_2:1746102-1746121 | None:intergenic | 30.0% | |
| TACAAAAGTCATTGATCAGA+AGG | + | chr2_2:1746411-1746430 | Msa0229990:CDS | 30.0% | |
| GACAGAAAATATAATTGCCA+AGG | - | chr2_2:1746545-1746564 | None:intergenic | 30.0% | |
| AAACCATTAAACACAATCCA+TGG | - | chr2_2:1747098-1747117 | None:intergenic | 30.0% | |
| AAGAGTTATCTAAGTTTGTG+TGG | + | chr2_2:1747230-1747249 | Msa0229990:intron | 30.0% | |
| !!! | GATCTACTTTGAAATGCTTT+TGG | + | chr2_2:1747356-1747375 | Msa0229990:intron | 30.0% |
| !!! | TTTGCACCATCTTTTTTTTC+AGG | + | chr2_2:1747563-1747582 | Msa0229990:intron | 30.0% |
| !!! | TTGCACCATCTTTTTTTTCA+GGG | + | chr2_2:1747564-1747583 | Msa0229990:intron | 30.0% |
| ACTGGATTGATTGAATTAGA+AGG | + | chr2_2:1747816-1747835 | Msa0229990:three_prime_UTR | 30.0% | |
| CTGGATTGATTGAATTAGAA+GGG | + | chr2_2:1747817-1747836 | Msa0229990:three_prime_UTR | 30.0% | |
| ATTGATTGAATTAGAAGGGA+AGG | + | chr2_2:1747821-1747840 | Msa0229990:three_prime_UTR | 30.0% | |
| GAAGAACAATAGATCCTTTC+TGG | - | chr2_2:1744171-1744190 | None:intergenic | 35.0% | |
| CATAGTTCTTACAGCCTTAA+TGG | - | chr2_2:1744235-1744254 | None:intergenic | 35.0% | |
| CTTAATGAATCAGCATCAAC+AGG | - | chr2_2:1744304-1744323 | None:intergenic | 35.0% | |
| !! | CTGTTGATGCTGATTCATTA+AGG | + | chr2_2:1744302-1744321 | Msa0229990:CDS | 35.0% |
| TGAGCAAATTCAAGCTGAAT+TGG | + | chr2_2:1744345-1744364 | Msa0229990:CDS | 35.0% | |
| ATTGGATGTAAATGCAAAGG+AGG | + | chr2_2:1744363-1744382 | Msa0229990:CDS | 35.0% | |
| !!! | TACTTTTTTCTCTAATCCGC+AGG | + | chr2_2:1744458-1744477 | Msa0229990:intron | 35.0% |
| TATTGAAGAATGTGATCCTG+CGG | - | chr2_2:1744477-1744496 | None:intergenic | 35.0% | |
| ATTTCATCTGAATTGTGTGG+TGG | + | chr2_2:1744600-1744619 | Msa0229990:CDS | 35.0% | |
| TTGTGACAGCTGTTATTCTA+CGG | - | chr2_2:1744781-1744800 | None:intergenic | 35.0% | |
| TGCTTCTGATGCAATGAAAA+TGG | + | chr2_2:1744808-1744827 | Msa0229990:CDS | 35.0% | |
| ! | CTTGTGTTTTCCATTCTACT+TGG | + | chr2_2:1744933-1744952 | Msa0229990:intron | 35.0% |
| ! | GTTTTCCATTCTACTTGGTT+TGG | + | chr2_2:1744938-1744957 | Msa0229990:intron | 35.0% |
| TCGCAGTTAATGAATGAAGT+TGG | + | chr2_2:1744996-1745015 | Msa0229990:intron | 35.0% | |
| TTGGAACCTATTCAACATAC+TGG | + | chr2_2:1745146-1745165 | Msa0229990:intron | 35.0% | |
| CGTGCACTTTAATTCAATAG+AGG | - | chr2_2:1745199-1745218 | None:intergenic | 35.0% | |
| ATACATGAAACCCCTTTCTT+GGG | - | chr2_2:1745290-1745309 | None:intergenic | 35.0% | |
| AATACATGAAACCCCTTTCT+TGG | - | chr2_2:1745291-1745310 | None:intergenic | 35.0% | |
| ACTGTTAGAATATGGGTGTT+TGG | + | chr2_2:1745340-1745359 | Msa0229990:intron | 35.0% | |
| ! | GTGTTTGGAATAGCTTATCT+GGG | + | chr2_2:1745355-1745374 | Msa0229990:intron | 35.0% |
| !! | TACTTTTTGGAGATCTCAAG+TGG | + | chr2_2:1745592-1745611 | Msa0229990:intron | 35.0% |
| CTAAAATTATTGGTGGGAGT+GGG | - | chr2_2:1745709-1745728 | None:intergenic | 35.0% | |
| ! | TCTAAAATTATTGGTGGGAG+TGG | - | chr2_2:1745710-1745729 | None:intergenic | 35.0% |
| ! | CTTAAGTGACTTTTCTCCAA+TGG | + | chr2_2:1745779-1745798 | Msa0229990:intron | 35.0% |
| AACAGATAATCGTGTTGTGA+GGG | - | chr2_2:1745881-1745900 | None:intergenic | 35.0% | |
| TAAGGAAATCAGTGTCAATC+AGG | - | chr2_2:1745928-1745947 | None:intergenic | 35.0% | |
| CAATAAGCAACAGACAAAAG+TGG | - | chr2_2:1746165-1746184 | None:intergenic | 35.0% | |
| TGCATATCTCACGTTAATGT+TGG | + | chr2_2:1746358-1746377 | Msa0229990:CDS | 35.0% | |
| CAACTCAACACATAATAACG+AGG | - | chr2_2:1746488-1746507 | None:intergenic | 35.0% | |
| ! | AGCAATGTTTGCTGATAAAC+AGG | + | chr2_2:1746585-1746604 | Msa0229990:intron | 35.0% |
| ! | GCAATGTTTGCTGATAAACA+GGG | + | chr2_2:1746586-1746605 | Msa0229990:intron | 35.0% |
| TTACCTTTATCTCCTTTCTC+CGG | - | chr2_2:1746676-1746695 | None:intergenic | 35.0% | |
| TTGATCATAATGCCCTTGTT+TGG | + | chr2_2:1746932-1746951 | Msa0229990:intron | 35.0% | |
| ! | TTTTGTGTTCGTCCAAACAA+GGG | - | chr2_2:1746947-1746966 | None:intergenic | 35.0% |
| ! | TTTTTGTGTTCGTCCAAACA+AGG | - | chr2_2:1746948-1746967 | None:intergenic | 35.0% |
| ! | TTGAAATGCTTTTGGCCAAA+AGG | + | chr2_2:1747364-1747383 | Msa0229990:intron | 35.0% |
| GCTTCAGTCATAAACATCTT+AGG | + | chr2_2:1747427-1747446 | Msa0229990:intron | 35.0% | |
| CTGTACCCTGAAAAAAAAGA+TGG | - | chr2_2:1747572-1747591 | None:intergenic | 35.0% | |
| ATCCGTGAAATTGAACTAGA+AGG | + | chr2_2:1747638-1747657 | Msa0229990:exon | 35.0% | |
| TCCGTGAAATTGAACTAGAA+GGG | + | chr2_2:1747639-1747658 | Msa0229990:exon | 35.0% | |
| TGTTCAAGTGTAATAGCAAC+TGG | + | chr2_2:1747798-1747817 | Msa0229990:three_prime_UTR | 35.0% | |
| TTCACTATGCTGGAATGAGT+AGG | + | chr2_2:1744274-1744293 | Msa0229990:intron | 40.0% | |
| AATGTAGGTCTATCCTGATC+CGG | + | chr2_2:1744506-1744525 | Msa0229990:intron | 40.0% | |
| ! | CTGACCCTGATAACGAAAAA+TGG | + | chr2_2:1744571-1744590 | Msa0229990:CDS | 40.0% |
| ! | CTCTCGTGTGTTTGAGATAT+GGG | - | chr2_2:1744711-1744730 | None:intergenic | 40.0% |
| !! | AGCTTTTGCACTTTTAGCTG+AGG | + | chr2_2:1744736-1744755 | Msa0229990:CDS | 40.0% |
| !! | TTTTGCACTTTTAGCTGAGG+AGG | + | chr2_2:1744739-1744758 | Msa0229990:CDS | 40.0% |
| !! | TTTGCACTTTTAGCTGAGGA+GGG | + | chr2_2:1744740-1744759 | Msa0229990:CDS | 40.0% |
| TGAGAAGCAAGTAGATGAAG+CGG | + | chr2_2:1744841-1744860 | Msa0229990:CDS | 40.0% | |
| TAAGCTAGAAGGAAGTTTGC+TGG | + | chr2_2:1744865-1744884 | Msa0229990:CDS | 40.0% | |
| TGGAACCAAACCAAGTAGAA+TGG | - | chr2_2:1744946-1744965 | None:intergenic | 40.0% | |
| ! | GGTGTTTGGAATAGCTTATC+TGG | + | chr2_2:1745354-1745373 | Msa0229990:intron | 40.0% |
| CACATTTGTGTAAGTGTCTG+CGG | + | chr2_2:1745394-1745413 | Msa0229990:intron | 40.0% | |
| ! | AAGTGACTTTTCTCCAATGG+TGG | + | chr2_2:1745782-1745801 | Msa0229990:intron | 40.0% |
| AAGTATCCCAATAAGTTCCC+TGG | + | chr2_2:1745834-1745853 | Msa0229990:intron | 40.0% | |
| TATCAAGTCATTCTCCACCA+GGG | - | chr2_2:1745854-1745873 | None:intergenic | 40.0% | |
| CAACAGATAATCGTGTTGTG+AGG | - | chr2_2:1745882-1745901 | None:intergenic | 40.0% | |
| CAATCAGGCAGAGAAAGATA+TGG | - | chr2_2:1745913-1745932 | None:intergenic | 40.0% | |
| GCATATGTCTCTATCTGCTA+AGG | - | chr2_2:1745946-1745965 | None:intergenic | 40.0% | |
| ATTTCAGCTTTCTTAGCTGC+AGG | - | chr2_2:1746064-1746083 | None:intergenic | 40.0% | |
| AACAGACAAAAGTGGAACAG+GGG | - | chr2_2:1746157-1746176 | None:intergenic | 40.0% | |
| CAACAGACAAAAGTGGAACA+GGG | - | chr2_2:1746158-1746177 | None:intergenic | 40.0% | |
| TGTAACGTTAACAGCTGAGA+AGG | + | chr2_2:1746303-1746322 | Msa0229990:CDS | 40.0% | |
| ! | CTGATCTAGCTGTTTCAGAT+GGG | + | chr2_2:1746326-1746345 | Msa0229990:CDS | 40.0% |
| AAGGACACATGACAAACTCA+AGG | - | chr2_2:1746526-1746545 | None:intergenic | 40.0% | |
| TTGAGTTTGTCATGTGTCCT+TGG | + | chr2_2:1746525-1746544 | Msa0229990:intron | 40.0% | |
| TAAACAGGGATTGTCAGTGA+TGG | + | chr2_2:1746600-1746619 | Msa0229990:intron | 40.0% | |
| GAAAGGAGATAAAGGTAAGC+TGG | + | chr2_2:1746678-1746697 | Msa0229990:CDS | 40.0% | |
| GTAAGCTGGATGTATCAGAA+TGG | + | chr2_2:1746692-1746711 | Msa0229990:CDS | 40.0% | |
| AGAATGGCTGAGTAATGCTT+TGG | + | chr2_2:1746708-1746727 | Msa0229990:CDS | 40.0% | |
| GAATGGCTGAGTAATGCTTT+GGG | + | chr2_2:1746709-1746728 | Msa0229990:CDS | 40.0% | |
| AATGGCTGAGTAATGCTTTG+GGG | + | chr2_2:1746710-1746729 | Msa0229990:CDS | 40.0% | |
| AGATGTGGTAAAGGAAAAGG+AGG | + | chr2_2:1746745-1746764 | Msa0229990:CDS | 40.0% | |
| CCATTAAACACAATCCATGG+TGG | - | chr2_2:1747095-1747114 | None:intergenic | 40.0% | |
| ! | CCACCATGGATTGTGTTTAA+TGG | + | chr2_2:1747092-1747111 | Msa0229990:intron | 40.0% |
| !! | CCCCTTCTAGTTCAATTTCA+CGG | - | chr2_2:1747643-1747662 | None:intergenic | 40.0% |
| CCGTGAAATTGAACTAGAAG+GGG | + | chr2_2:1747640-1747659 | Msa0229990:exon | 40.0% | |
| CGTGAAATTGAACTAGAAGG+GGG | + | chr2_2:1747641-1747660 | Msa0229990:exon | 40.0% | |
| GTGAAATTGAACTAGAAGGG+GGG | + | chr2_2:1747642-1747661 | Msa0229990:exon | 40.0% | |
| CATTACAGAGTGTGCTTTGA+TGG | + | chr2_2:1747742-1747761 | Msa0229990:three_prime_UTR | 40.0% | |
| !! | ACGAATGCAGGAAGTACTCT+TGG | + | chr2_2:1744133-1744152 | Msa0229990:CDS | 45.0% |
| GGCAATCATGTAGACCAGAA+AGG | + | chr2_2:1744154-1744173 | Msa0229990:CDS | 45.0% | |
| ACGGTAAGGCTTGTCCATTA+AGG | + | chr2_2:1744218-1744237 | Msa0229990:intron | 45.0% | |
| CCAACTGACACAACTCTAAC+CGG | - | chr2_2:1744528-1744547 | None:intergenic | 45.0% | |
| TTTCGTTATCAGGGTCAGCA+AGG | - | chr2_2:1744569-1744588 | None:intergenic | 45.0% | |
| ! | CCTCTCGTGTGTTTGAGATA+TGG | - | chr2_2:1744712-1744731 | None:intergenic | 45.0% |
| CCATATCTCAAACACACGAG+AGG | + | chr2_2:1744709-1744728 | Msa0229990:CDS | 45.0% | |
| !! | AGAAGGAAGTTTGCTGGAAG+AGG | + | chr2_2:1744871-1744890 | Msa0229990:CDS | 45.0% |
| !! | TTGCTGGAAGAGGTTGGTAT+TGG | + | chr2_2:1744881-1744900 | Msa0229990:intron | 45.0% |
| ! | ACAGTTGCTTTCCTGTCCTT+CGG | + | chr2_2:1745262-1745281 | Msa0229990:intron | 45.0% |
| GGGTTATCAAGAACCACCAT+TGG | - | chr2_2:1745798-1745817 | None:intergenic | 45.0% | |
| TATCCCAATAAGTTCCCTGG+TGG | + | chr2_2:1745837-1745856 | Msa0229990:intron | 45.0% | |
| TCTCCACCAGGGAACTTATT+GGG | - | chr2_2:1745843-1745862 | None:intergenic | 45.0% | |
| TTCTCCACCAGGGAACTTAT+TGG | - | chr2_2:1745844-1745863 | None:intergenic | 45.0% | |
| GTATCAAGTCATTCTCCACC+AGG | - | chr2_2:1745855-1745874 | None:intergenic | 45.0% | |
| TACCTGAAGTAGGGCAATCT+TGG | - | chr2_2:1746092-1746111 | None:intergenic | 45.0% | |
| GCAACAGACAAAAGTGGAAC+AGG | - | chr2_2:1746159-1746178 | None:intergenic | 45.0% | |
| ! | GCTGATCTAGCTGTTTCAGA+TGG | + | chr2_2:1746325-1746344 | Msa0229990:CDS | 45.0% |
| AACAAAGCTGTAGTGTGTGC+TGG | + | chr2_2:1746646-1746665 | Msa0229990:CDS | 45.0% | |
| ACAAAGCTGTAGTGTGTGCT+GGG | + | chr2_2:1746647-1746666 | Msa0229990:CDS | 45.0% | |
| TTACCACATCTCCCTTTCAG+TGG | - | chr2_2:1746736-1746755 | None:intergenic | 45.0% | |
| CTGAAAGGGAGATGTGGTAA+AGG | + | chr2_2:1746736-1746755 | Msa0229990:CDS | 45.0% | |
| GGGAGATGTGGTAAAGGAAA+AGG | + | chr2_2:1746742-1746761 | Msa0229990:CDS | 45.0% | |
| AGGAAAAGGAGGTCTTGCAA+CGG | + | chr2_2:1746756-1746775 | Msa0229990:CDS | 45.0% | |
| ! | TGCTTTTGGCCAAAAGGCTT+CGG | + | chr2_2:1747370-1747389 | Msa0229990:intron | 45.0% |
| AGATGCCTCACACGTAAATG+AGG | + | chr2_2:1747590-1747609 | Msa0229990:CDS | 45.0% | |
| CATAGCCTCATTTACGTGTG+AGG | - | chr2_2:1747598-1747617 | None:intergenic | 45.0% | |
| CTCACACGTAAATGAGGCTA+TGG | + | chr2_2:1747596-1747615 | Msa0229990:CDS | 45.0% | |
| AATTGAACTAGAAGGGGGGA+AGG | + | chr2_2:1747646-1747665 | Msa0229990:exon | 45.0% | |
| ACCCTTGATACGCTTGGCAT+CGG | - | chr2_2:1744398-1744417 | None:intergenic | 50.0% | |
| !! | AAGGGTCTGCGAGCTGTTTT+TGG | + | chr2_2:1744412-1744431 | Msa0229990:CDS | 50.0% |
| GACACAACTCTAACCGGATC+AGG | - | chr2_2:1744522-1744541 | None:intergenic | 50.0% | |
| CCGGTTAGAGTTGTGTCAGT+TGG | + | chr2_2:1744525-1744544 | Msa0229990:CDS | 50.0% | |
| GCTGAGGAGGGAATTGCTAA+AGG | + | chr2_2:1744752-1744771 | Msa0229990:CDS | 50.0% | |
| GATGAAGCGGCTAAGCTAGA+AGG | + | chr2_2:1744854-1744873 | Msa0229990:CDS | 50.0% | |
| !! | GGAAGTTTGCTGGAAGAGGT+TGG | + | chr2_2:1744875-1744894 | Msa0229990:intron | 50.0% |
| TGGTTCCATCACTTGAGCCT+TGG | + | chr2_2:1744958-1744977 | Msa0229990:intron | 50.0% | |
| TCCATCACTTGAGCCTTGGA+AGG | + | chr2_2:1744962-1744981 | Msa0229990:intron | 50.0% | |
| ACCTTCCAAGGCTCAAGTGA+TGG | - | chr2_2:1744966-1744985 | None:intergenic | 50.0% | |
| ! | CAGTTGCTTTCCTGTCCTTC+GGG | + | chr2_2:1745263-1745282 | Msa0229990:intron | 50.0% |
| GAGATCTCAAGTGGATCCCA+TGG | + | chr2_2:1745601-1745620 | Msa0229990:intron | 50.0% | |
| GACCAAGATTGCCCTACTTC+AGG | + | chr2_2:1746087-1746106 | Msa0229990:CDS | 50.0% | |
| CAAAGCTGTAGTGTGTGCTG+GGG | + | chr2_2:1746648-1746667 | Msa0229990:CDS | 50.0% | |
| GTGCCGGAGAAAGGAGATAA+AGG | + | chr2_2:1746670-1746689 | Msa0229990:CDS | 50.0% | |
| !! | AATGCTTTGGGGCCACTGAA+AGG | + | chr2_2:1746721-1746740 | Msa0229990:CDS | 50.0% |
| !! | ATGCTTTGGGGCCACTGAAA+GGG | + | chr2_2:1746722-1746741 | Msa0229990:CDS | 50.0% |
| GGAAAAGGAGGTCTTGCAAC+GGG | + | chr2_2:1746757-1746776 | Msa0229990:CDS | 50.0% | |
| AGAATCTTCCTGCTCCACCA+TGG | + | chr2_2:1747078-1747097 | Msa0229990:intron | 50.0% | |
| ! | AACACAATCCATGGTGGAGC+AGG | - | chr2_2:1747089-1747108 | None:intergenic | 50.0% |
| ! | GCTGTATCTCCGAAGCCTTT+TGG | - | chr2_2:1747382-1747401 | None:intergenic | 50.0% |
| ! | CAGAGTGTGCTTTGATGGCA+AGG | + | chr2_2:1747747-1747766 | Msa0229990:three_prime_UTR | 50.0% |
| TGCCGATGCCAAGCGTATCA+AGG | + | chr2_2:1744393-1744412 | Msa0229990:CDS | 55.0% | |
| GCCGATGCCAAGCGTATCAA+GGG | + | chr2_2:1744394-1744413 | Msa0229990:CDS | 55.0% | |
| TCGCAGACCCTTGATACGCT+TGG | - | chr2_2:1744404-1744423 | None:intergenic | 55.0% | |
| CACTTGAGCCTTGGAAGGTC+TGG | + | chr2_2:1744967-1744986 | Msa0229990:intron | 55.0% | |
| GAACCAAGCCAGACCTTCCA+AGG | - | chr2_2:1744978-1744997 | None:intergenic | 55.0% | |
| TTTCTTGGGACCCGAAGGAC+AGG | - | chr2_2:1745276-1745295 | None:intergenic | 55.0% | |
| TGTCCTTCGGGTCCCAAGAA+AGG | + | chr2_2:1745275-1745294 | Msa0229990:intron | 55.0% | |
| GTCCTTCGGGTCCCAAGAAA+GGG | + | chr2_2:1745276-1745295 | Msa0229990:intron | 55.0% | |
| TCCTTCGGGTCCCAAGAAAG+GGG | + | chr2_2:1745277-1745296 | Msa0229990:intron | 55.0% | |
| CACGAACTGCTGCAACATCG+AGG | - | chr2_2:1746384-1746403 | None:intergenic | 55.0% | |
| CGATGTTGCAGCAGTTCGTG+AGG | + | chr2_2:1746384-1746403 | Msa0229990:CDS | 55.0% | |
| GAGCCTTGGAAGGTCTGGCT+TGG | + | chr2_2:1744972-1744991 | Msa0229990:intron | 60.0% | |
| ACCCCTTTCTTGGGACCCGA+AGG | - | chr2_2:1745281-1745300 | None:intergenic | 60.0% | |
| TGTAGTGTGTGCTGGGGTGC+CGG | + | chr2_2:1746654-1746673 | Msa0229990:CDS | 60.0% | |
| GGGCCACTGAAAGGGAGATG+TGG | + | chr2_2:1746730-1746749 | Msa0229990:CDS | 60.0% | |
| AGGAGGTCTTGCAACGGGAC+AGG | + | chr2_2:1746762-1746781 | Msa0229990:CDS | 60.0% | |
| !! | TGTGCTGGGGTGCCGGAGAA+AGG | + | chr2_2:1746661-1746680 | Msa0229990:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 1744130 | 1747922 | 1744130 | ID=Msa0229990;Name=Msa0229990 |
| chr2_2 | mRNA | 1744130 | 1747922 | 1744130 | ID=Msa0229990-mRNA-1;Parent=Msa0229990;Name=Msa0229990-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|1|0.87|1|1|1|8|266|350 |
| chr2_2 | exon | 1744130 | 1744220 | 1744130 | ID=Msa0229990-mRNA-1:exon:726;Parent=Msa0229990-mRNA-1 |
| chr2_2 | exon | 1744296 | 1744438 | 1744296 | ID=Msa0229990-mRNA-1:exon:727;Parent=Msa0229990-mRNA-1 |
| chr2_2 | exon | 1744513 | 1744621 | 1744513 | ID=Msa0229990-mRNA-1:exon:728;Parent=Msa0229990-mRNA-1 |
| chr2_2 | exon | 1744705 | 1744892 | 1744705 | ID=Msa0229990-mRNA-1:exon:729;Parent=Msa0229990-mRNA-1 |
| chr2_2 | exon | 1746019 | 1746108 | 1746019 | ID=Msa0229990-mRNA-1:exon:730;Parent=Msa0229990-mRNA-1 |
| chr2_2 | exon | 1746250 | 1746432 | 1746250 | ID=Msa0229990-mRNA-1:exon:731;Parent=Msa0229990-mRNA-1 |
| chr2_2 | exon | 1746607 | 1746783 | 1746607 | ID=Msa0229990-mRNA-1:exon:732;Parent=Msa0229990-mRNA-1 |
| chr2_2 | exon | 1747585 | 1747922 | 1747585 | ID=Msa0229990-mRNA-1:exon:733;Parent=Msa0229990-mRNA-1 |
| chr2_2 | CDS | 1744130 | 1744220 | 1744130 | ID=Msa0229990-mRNA-1:cds;Parent=Msa0229990-mRNA-1 |
| chr2_2 | CDS | 1744296 | 1744438 | 1744296 | ID=Msa0229990-mRNA-1:cds;Parent=Msa0229990-mRNA-1 |
| chr2_2 | CDS | 1744513 | 1744621 | 1744513 | ID=Msa0229990-mRNA-1:cds;Parent=Msa0229990-mRNA-1 |
| chr2_2 | CDS | 1744705 | 1744892 | 1744705 | ID=Msa0229990-mRNA-1:cds;Parent=Msa0229990-mRNA-1 |
| chr2_2 | CDS | 1746019 | 1746108 | 1746019 | ID=Msa0229990-mRNA-1:cds;Parent=Msa0229990-mRNA-1 |
| chr2_2 | CDS | 1746250 | 1746432 | 1746250 | ID=Msa0229990-mRNA-1:cds;Parent=Msa0229990-mRNA-1 |
| chr2_2 | CDS | 1746607 | 1746783 | 1746607 | ID=Msa0229990-mRNA-1:cds;Parent=Msa0229990-mRNA-1 |
| chr2_2 | CDS | 1747585 | 1747656 | 1747585 | ID=Msa0229990-mRNA-1:cds;Parent=Msa0229990-mRNA-1 |
| chr2_2 | three_prime_UTR | 1747657 | 1747922 | 1747657 | ID=Msa0229990-mRNA-1:three_prime_utr;Parent=Msa0229990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
