AlfalfaGEDB | Msa1251470

M. sativa cultivar zhongmu-4 / Msa1251470

KEGG: K05543
GO: GO:0001932 GO:0001933 GO:0002943 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004857 GO:0004860 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006469 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009892 GO:0009987 GO:0010467 GO:0010563 GO:0010605 GO:0010941 GO:0016070 GO:0016491 GO:0016627 GO:0017150 GO:0019207 GO:0019210 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033673 GO:0034470 GO:0034641 GO:0034660 GO:0042325 GO:0042326 GO:0043086 GO:0043170 GO:0043412 GO:0043549 GO:0044092 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045936 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0055114 GO:0060255 GO:0060548 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0098772 GO:0140098 GO:0140101 GO:1901360 GO:1901363
PFAM: PF01207.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1251470	AET03306.2	98.020	303	6	0	1	303	1	303	0.0	616

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1251470	sp\|Q9NX74\|DUS2L_HUMAN	52.632	304	137	3	3	302	10	310	1.31e-100	306

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1251470	A0A396GKI1	98.020	303	6	0	1	303	1	303	0.0	616

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0071550	Msa1251470	0.812401	4.318358e-51	-8.615850e-47
Msa0223290	Msa1251470	0.803969	2.704262e-49	-8.615850e-47
Msa0223380	Msa1251470	0.829786	4.236875e-55	-8.615850e-47
Msa0389810	Msa1251470	0.818595	1.805997e-52	-8.615850e-47
Msa0468130	Msa1251470	0.808437	3.099315e-50	-8.615850e-47
Msa0473240	Msa1251470	0.807978	3.880589e-50	-8.615850e-47
Msa0581920	Msa1251470	0.811925	5.486407e-51	-8.615850e-47
Msa0982270	Msa1251470	0.817524	3.153383e-52	-8.615850e-47
Msa1077670	Msa1251470	0.821015	5.054652e-53	-8.615850e-47
Msa1095480	Msa1251470	0.801003	1.105126e-48	-8.615850e-47

Showing 1 to 10 of 11 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1251470	MtrunA17_Chr8g0366841	98.020	303	6	0	1	303	1	303	0.0	616
Msa1251470	MtrunA17_Chr4g0053271	34.979	243	138	4	4	243	68	293	1.64e-34	129
Msa1251470	MtrunA17_Chr8g0335201	97.674	43	1	0	183	225	34	76	9.46e-23	91.3
Msa1251470	MtrunA17_Chr3g0145331	29.200	250	154	7	1	243	334	567	1.93e-22	97.4

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1251470	AT3G49640.4	71.947	303	85	0	1	303	1	303	3.41e-169	471
Msa1251470	AT3G49640.1	71.947	303	85	0	1	303	1	303	2.75e-168	470
Msa1251470	AT3G49640.5	71.200	250	72	0	54	303	15	264	4.04e-135	384
Msa1251470	AT3G49640.2	71.200	250	72	0	54	303	15	264	2.39e-134	382
Msa1251470	AT3G49640.3	77.391	230	52	0	1	230	1	230	4.37e-133	378
Msa1251470	AT5G67220.1	34.568	243	139	4	4	243	87	312	3.02e-34	129
Msa1251470	AT4G38890.1	28.667	300	179	11	1	281	334	617	2.71e-22	97.4

Showing 1 to 7 of 7 entries

Previous1Next

Find 110 sgRNAs with CRISPR-Local

Find 620 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAAAACAGCCTGACT+AGG	0.554623	8_2:+47569134	None:intergenic
AAAATCAGTAAGTTCCTTAG+GGG	0.619097	8_2:-47569180	Msa1251470:three_prime_UTR
AAAATTACCGCATGATACAG+TGG	0.653849	8_2:-47573363	Msa1251470:CDS
AAACTCACAACGCGAACCAT+AGG	0.535701	8_2:+47577005	None:intergenic
AAAGAATTTCTCTCCAACTC+AGG	0.518637	8_2:-47568881	Msa1251470:three_prime_UTR
AAATGCGAACGCCGAATCAA+CGG	0.555297	8_2:-47576797	Msa1251470:intron
AACATATATCACAAGGATAA+AGG	0.375147	8_2:+47569310	None:intergenic
AACTTACGCTATCTCTGCTG+TGG	0.623296	8_2:+47569350	None:intergenic
AAGCACCAAGCATACATTAA+GGG	0.492478	8_2:-47569436	Msa1251470:CDS
AATGAATTGAATATCGAGAT+GGG	0.473794	8_2:+47577103	None:intergenic

Showing 1 to 10 of 110 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATGAATTGAATATCGAGATG+GGG	+	chr8_2:47568891-47568910	None:intergenic	30.0%
GAATGAATTGAATATCGAGA+TGG	+	chr8_2:47568893-47568912	None:intergenic	30.0%
GAAGTTATAAACTAATTGCG+AGG	-	chr8_2:47569634-47569653	Msa1251470:CDS	30.0%
AGTTATAAACTAATTGCGAG+GGG	-	chr8_2:47569636-47569655	Msa1251470:CDS	30.0%
AGTTGGATATGAATATGCAA+AGG	-	chr8_2:47569769-47569788	Msa1251470:intron	30.0%
ATGTAATGTAATGGTCTGTT+TGG	-	chr8_2:47569876-47569895	Msa1251470:intron	30.0%
AAAACCCTCTAACTTCAATA+TGG	+	chr8_2:47570015-47570034	None:intergenic	30.0%
ATCTATCTGTAATGATTGAC+TGG	+	chr8_2:47570440-47570459	None:intergenic	30.0%
CTGACCAAGAAATAAGATAA+TGG	+	chr8_2:47570628-47570647	None:intergenic	30.0%
GATAGAGTTGTGTTTCAAAT+AGG	-	chr8_2:47570722-47570741	Msa1251470:intron	30.0%

Showing 1 to 10 of 620 entries

Previous1 2 3 4 5…62Next

Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	47568869	47577145	47568869	ID=Msa1251470;Name=Msa1251470
chr8_2	mRNA	47568869	47577145	47568869	ID=Msa1251470-mRNA-1;Parent=Msa1251470;Name=Msa1251470-mRNA-1;_AED=0.18;_eAED=0.18;_QI=88\|1\|1\|1\|1\|1\|8\|484\|303
chr8_2	exon	47568869	47569484	47568869	ID=Msa1251470-mRNA-1:exon:14387;Parent=Msa1251470-mRNA-1
chr8_2	exon	47569619	47569725	47569619	ID=Msa1251470-mRNA-1:exon:14386;Parent=Msa1251470-mRNA-1
chr8_2	exon	47572352	47572488	47572352	ID=Msa1251470-mRNA-1:exon:14385;Parent=Msa1251470-mRNA-1
chr8_2	exon	47573308	47573444	47573308	ID=Msa1251470-mRNA-1:exon:14384;Parent=Msa1251470-mRNA-1
chr8_2	exon	47573700	47573808	47573700	ID=Msa1251470-mRNA-1:exon:14383;Parent=Msa1251470-mRNA-1
chr8_2	exon	47575228	47575366	47575228	ID=Msa1251470-mRNA-1:exon:14382;Parent=Msa1251470-mRNA-1
chr8_2	exon	47576798	47576903	47576798	ID=Msa1251470-mRNA-1:exon:14381;Parent=Msa1251470-mRNA-1
chr8_2	exon	47577013	47577145	47577013	ID=Msa1251470-mRNA-1:exon:14380;Parent=Msa1251470-mRNA-1
chr8_2	five_prime_UTR	47577058	47577145	47577058	ID=Msa1251470-mRNA-1:five_prime_utr;Parent=Msa1251470-mRNA-1
chr8_2	CDS	47577013	47577057	47577013	ID=Msa1251470-mRNA-1:cds;Parent=Msa1251470-mRNA-1
chr8_2	CDS	47576798	47576903	47576798	ID=Msa1251470-mRNA-1:cds;Parent=Msa1251470-mRNA-1
chr8_2	CDS	47575228	47575366	47575228	ID=Msa1251470-mRNA-1:cds;Parent=Msa1251470-mRNA-1
chr8_2	CDS	47573700	47573808	47573700	ID=Msa1251470-mRNA-1:cds;Parent=Msa1251470-mRNA-1
chr8_2	CDS	47573308	47573444	47573308	ID=Msa1251470-mRNA-1:cds;Parent=Msa1251470-mRNA-1
chr8_2	CDS	47572352	47572488	47572352	ID=Msa1251470-mRNA-1:cds;Parent=Msa1251470-mRNA-1
chr8_2	CDS	47569619	47569725	47569619	ID=Msa1251470-mRNA-1:cds;Parent=Msa1251470-mRNA-1
chr8_2	CDS	47569353	47569484	47569353	ID=Msa1251470-mRNA-1:cds;Parent=Msa1251470-mRNA-1
chr8_2	three_prime_UTR	47568869	47569352	47568869	ID=Msa1251470-mRNA-1:three_prime_utr;Parent=Msa1251470-mRNA-1

Gene Sequence

>Msa1251470

ATGGATTACCGTAACAAAAAGATTCTTGCTCCTATGGTTCGCGTTGGCACTCTTCCACTTAGATTACTAGCTGCTGAATATGGTGCAGATATCACTTACGGTGAAGAAATTGTTGACCACAAAATTATCAAATGCGAACGCCGAATCAACGAACATCTTGGATCCACTGATTTTGTGGAGAAAGGGACGGAAAGTGTCGTGTTTAGAACCTGTGATCAAGAAAAAGATAGAGTTGTGTTTCAAATAGGCACATCTGATGCCGTGAGGGCCCTAACTGCTGCTCAGTTAGTGTGTAATGATGTTGCTGCAATAGATATTAACATGGGATGCCCCAAGGCATTTTCTTTGAGTGGTGGGATGGGTGCTGCTCTGTTGTCCAAACCAGAGCTTATCAGTGATATCTTAACAACATTACGGAGGAATTTGAGCCTACCTGTAACATGTAAGATTCGACTTCTAAAATTACCGCATGATACAGTGGAGCTTGCCAGGCGAATTGAGAAAACTGGTGTTGATGCTCTTGCAGTCCATGGAAGATATGTCTTAGATAGGCCCAGAGATCCGGCAAAGTGGAGTGGAATTGCCGATGTTGTGTCAGCACTATCTATTCCAGTTATAGCAAATGGTGATGTCTTTGAGTATGACGATTTCCAACGCATTAAATCTGCTACAGGTGCTTCGTCGGTGATGGCTGCAAGAGGGGCACTGTGGAATCCTTCAATATTTTCACCTGAAGGCGAAGTTTCTTATGAGGTTACACAAAAAGAATATATTAGGAAGTGCATCTTGTGGGATAATGATATTAGAAGCACCAAGCATACATTAAGGGATATGAAGTCACATTATTCCTCTCTTGAAGTCCCTGAATGGAGGGCCGTGGTCAAATCCGAGACCACAGCAGAGATAGCGTAA

Protein sequence

>Msa1251470

MDYRNKKILAPMVRVGTLPLRLLAAEYGADITYGEEIVDHKIIKCERRINEHLGSTDFVEKGTESVVFRTCDQEKDRVVFQIGTSDAVRALTAAQLVCNDVAAIDINMGCPKAFSLSGGMGAALLSKPELISDILTTLRRNLSLPVTCKIRLLKLPHDTVELARRIEKTGVDALAVHGRYVLDRPRDPAKWSGIADVVSALSIPVIANGDVFEYDDFQRIKSATGASSVMAARGALWNPSIFSPEGEVSYEVTQKEYIRKCILWDNDIRSTKHTLRDMKSHYSSLEVPEWRAVVKSETTAEIA*