AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0071550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0071550 MtrunA17_Chr1g0177751 97.849 651 11 3 1 650 1 649 0.0 1319
Msa0071550 MtrunA17_Chr7g0267481 64.841 694 166 23 1 650 1 660 0.0 782
Msa0071550 MtrunA17_Chr4g0025521 46.540 737 281 28 1 650 1 711 1.83e-165 490
Msa0071550 MtrunA17_Chr1g0155681 54.870 308 119 5 142 439 148 445 4.41e-100 318
Msa0071550 MtrunA17_Chr3g0141941 54.266 293 117 6 150 435 148 430 5.71e-95 302
Msa0071550 MtrunA17_Chr5g0403251 46.552 348 160 6 153 477 330 674 1.78e-88 291
Msa0071550 MtrunA17_Chr8g0373801 53.103 290 116 4 157 434 384 665 4.77e-87 290
Msa0071550 MtrunA17_Chr8g0387321 53.558 267 116 3 161 424 185 446 1.55e-79 264
Msa0071550 MtrunA17_Chr4g0028701 44.444 315 118 6 153 419 237 542 2.74e-73 249
Msa0071550 MtrunA17_Chr3g0141931 47.584 269 122 4 160 420 164 421 4.04e-72 239
Msa0071550 MtrunA17_Chr4g0008591 41.617 334 145 7 156 470 191 493 2.26e-70 239
Msa0071550 MtrunA17_Chr7g0240371 45.066 304 128 8 153 443 129 406 8.97e-68 230
Msa0071550 MtrunA17_Chr2g0327021 40.498 321 166 7 112 419 203 511 8.50e-66 227
Msa0071550 MtrunA17_Chr1g0151681 35.211 284 155 5 162 433 244 510 5.45e-49 179
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0071550 AT2G35940.3 50.068 737 224 24 1 650 1 680 0.0 555
Msa0071550 AT2G35940.1 50.068 737 224 24 1 650 1 680 0.0 555
Msa0071550 AT2G35940.2 50.068 737 224 24 1 650 1 680 0.0 555
Msa0071550 AT2G16400.1 54.082 294 115 4 144 435 97 372 2.75e-97 307
Msa0071550 AT4G34610.2 51.543 324 118 7 124 429 94 396 2.47e-92 296
Msa0071550 AT4G34610.4 51.543 324 118 7 124 429 94 396 2.47e-92 296
Msa0071550 AT4G34610.3 51.543 324 118 7 124 429 94 396 2.47e-92 296
Msa0071550 AT4G34610.1 51.543 324 118 7 124 429 94 396 2.47e-92 296
Msa0071550 AT1G75410.1 52.921 291 122 5 156 442 162 441 1.24e-91 294
Msa0071550 AT1G75410.2 52.921 291 122 5 156 442 162 441 1.24e-91 294
Msa0071550 AT1G19700.1 56.679 277 106 7 152 421 156 425 4.96e-91 293
Msa0071550 AT1G19700.3 56.679 277 106 7 152 421 156 425 4.96e-91 293
Msa0071550 AT1G19700.5 56.679 277 106 7 152 421 156 425 4.96e-91 293
Msa0071550 AT1G19700.4 56.679 277 106 7 152 421 156 425 4.96e-91 293
Msa0071550 AT1G19700.2 56.679 277 106 7 152 421 156 425 4.96e-91 293
Msa0071550 AT2G27220.1 47.093 344 138 8 163 496 78 387 6.02e-85 273
Msa0071550 AT2G27220.3 47.093 344 138 8 163 496 78 387 6.02e-85 273
Msa0071550 AT2G27220.2 44.751 362 138 9 163 496 78 405 4.38e-81 264
Msa0071550 AT4G36870.2 50.000 296 126 5 161 443 312 598 3.44e-80 269
Msa0071550 AT4G36870.1 50.000 296 126 5 161 443 312 598 3.44e-80 269
Msa0071550 AT2G23760.2 51.673 269 112 4 155 414 232 491 8.45e-78 260
Msa0071550 AT2G23760.1 51.673 269 112 4 155 414 232 491 8.45e-78 260
Msa0071550 AT2G23760.3 51.673 269 112 4 155 414 232 491 8.45e-78 260
Msa0071550 AT1G75410.3 53.498 243 98 5 156 394 162 393 1.02e-73 243
Msa0071550 AT5G41410.1 45.985 274 132 3 164 423 196 467 1.30e-72 246
Msa0071550 AT2G23760.4 43.302 321 112 5 155 414 232 543 5.77e-68 235
Msa0071550 AT1G75430.1 42.123 292 148 7 155 438 10 288 7.94e-65 216
Msa0071550 AT4G36870.4 49.180 244 106 4 161 395 312 546 1.05e-63 220
Msa0071550 AT5G02030.1 40.979 327 153 6 100 417 123 418 1.07e-63 221
Msa0071550 AT4G36870.3 48.760 242 106 4 161 393 312 544 1.59e-62 218
Msa0071550 AT4G32980.1 36.728 324 169 8 119 426 147 450 1.40e-54 194
Msa0071550 AT4G32980.2 36.728 324 169 8 119 426 147 450 1.40e-54 194
Msa0071550 AT2G27990.1 37.117 326 158 7 107 419 205 496 1.99e-52 190
Msa0071550 AT1G75430.2 37.885 227 125 6 155 373 10 228 6.12e-36 137
Msa0071550 AT2G27990.2 30.357 280 148 7 107 373 205 450 3.51e-26 112

Find 209 sgRNAs with CRISPR-Local

Find 397 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCAAACGGCTGTGTTTC+GGG 0.133801 1_2:-43602598 Msa0071550:CDS
GAACAAATTTCAATGAAATT+TGG 0.179649 1_2:-43599778 Msa0071550:CDS
GATTCACGCGCCGCTGAATT+AGG 0.199035 1_2:+43602712 None:intergenic
TCTTATTCGCAGCTCTAATT+TGG 0.208590 1_2:+43600833 None:intergenic
CCTCATTGTGACACATTATC+AGG 0.219156 1_2:-43599589 Msa0071550:CDS
TGCTTCAAACGGCTGTGTTT+CGG 0.238102 1_2:-43602599 Msa0071550:CDS
GTGGTGGAGGGAAGTGTTGC+CGG 0.239922 1_2:+43602882 None:intergenic
GATGAAGTTGTTAATGTTAA+TGG 0.243321 1_2:-43602520 Msa0071550:CDS
TAAAAGAAAGTGGTAATAAT+TGG 0.245416 1_2:+43598874 None:intergenic
TTCTTCCTAGTTGAATGTTT+TGG 0.253546 1_2:+43599542 None:intergenic
GAAATCTATGTGTTTACTTC+GGG 0.256611 1_2:-43599165 Msa0071550:three_prime_UTR
CATAGGGATTTGAAAGTATA+TGG 0.277303 1_2:-43599046 Msa0071550:three_prime_UTR
TAAATGCTCGAGTTCGTCTT+TGG 0.292125 1_2:-43600161 Msa0071550:CDS
AATTGTGCGGCAAACCTCTT+TGG 0.296812 1_2:+43599448 None:intergenic
TAATGTTAATGGTGGGATTA+AGG 0.300957 1_2:-43602509 Msa0071550:CDS
TAGAGCTGCGAATAAGAGTT+TGG 0.301506 1_2:-43600827 Msa0071550:CDS
ACTAATTTCATTGCTGGTTT+CGG 0.310210 1_2:-43599709 Msa0071550:CDS
AACCAAACTAATTTCATTGC+TGG 0.316269 1_2:-43599715 Msa0071550:CDS
AACCAGCAATGAAATTAGTT+TGG 0.317050 1_2:+43599713 None:intergenic
ATTATTAGTTGTTGTTTCAT+TGG 0.321824 1_2:+43599801 None:intergenic
CTGTTTCTGTTCTTCGTGCT+TGG 0.327008 1_2:-43600660 Msa0071550:CDS
AGTGTTGCCGGGGTGATTGC+CGG 0.333797 1_2:+43602894 None:intergenic
TCTGGTGTTGTTGGTGGTGG+AGG 0.335542 1_2:+43602869 None:intergenic
ATATGGTACAGGTTTCAAAT+TGG 0.342374 1_2:-43600188 Msa0071550:intron
CCGGCGTGTGGCGGCGGTTG+CGG 0.342838 1_2:+43602940 None:intergenic
TTCTCTTACTGCAGGGAATC+TGG 0.343902 1_2:-43599225 Msa0071550:three_prime_UTR
ACAAAGAGCTATTCAACAAT+TGG 0.347219 1_2:-43600734 Msa0071550:CDS
TGGTGGAGGGAAGTGTTGCC+GGG 0.348095 1_2:+43602883 None:intergenic
GTGAATGTTAGAAACAATTC+AGG 0.352767 1_2:-43599916 Msa0071550:CDS
TTTGAACAAGTTGCAGGAAT+TGG 0.356194 1_2:-43600934 Msa0071550:CDS
TCCTCGTTTGAACAAGTTGC+AGG 0.356397 1_2:-43600940 Msa0071550:CDS
TAGAGATGGTTATTGTTTCA+TGG 0.358531 1_2:-43599740 Msa0071550:CDS
TTGTTTGGAATTGAAACTTT+TGG 0.360991 1_2:+43599987 None:intergenic
CTTATTTATGCCACAAAATC+CGG 0.365359 1_2:+43599421 None:intergenic
GTTGGTGGTGGTGATGGAAA+TGG 0.367432 1_2:-43602406 Msa0071550:CDS
GGAACTCTTTCTTGTGGAGT+TGG 0.373552 1_2:+43600027 None:intergenic
AACCATAGGAATGTCTTGTT+TGG 0.375205 1_2:+43599972 None:intergenic
TTTCTAACATTCACACCAAT+AGG 0.376813 1_2:+43599925 None:intergenic
ACACCATCAACTTCACCTAT+TGG 0.384849 1_2:-43599940 Msa0071550:CDS
ATTAGCGAAACAAATGAGTT+TGG 0.384850 1_2:-43599511 Msa0071550:CDS
CTTTCGGGCAATCCTCTTTG+AGG 0.389055 1_2:+43600685 None:intergenic
TGTTTAAAAGATGCAATTAC+CGG 0.390768 1_2:-43600856 Msa0071550:CDS
CAAAACAAACAGGACTTACT+AGG 0.391251 1_2:-43600324 Msa0071550:CDS
GGTTCTGTTGGTGGTGGTGA+TGG 0.395350 1_2:-43602412 Msa0071550:CDS
TTATATATATGATCTATGTT+TGG 0.396100 1_2:+43604121 None:intergenic
TCATGGTTCCTCGTTCGCTT+TGG 0.399272 1_2:+43599853 None:intergenic
ATTCACGCGCCGCTGAATTA+GGG 0.401306 1_2:+43602713 None:intergenic
CATGAGGTTTCTGCTTTGCA+TGG 0.403905 1_2:-43602778 Msa0071550:CDS
AAGAACAGAAACAGATCTTT+CGG 0.408106 1_2:+43600669 None:intergenic
TGTATAAAGAAAGAAGGAAT+TGG 0.408121 1_2:-43599123 Msa0071550:three_prime_UTR
GGAGAAGGTGGTTCTGTTGG+TGG 0.408233 1_2:-43602421 Msa0071550:CDS
TTCAGCTTCACGGAACTTGA+TGG 0.410535 1_2:-43599892 Msa0071550:CDS
GTTTGCCGCACAATTGTTAC+CGG 0.411095 1_2:-43599440 Msa0071550:CDS
TTGGATTCTGTTTCCGAGGT+TGG 0.416477 1_2:+43600006 None:intergenic
TCATTGGACTTCACATGATT+CGG 0.418133 1_2:+43599817 None:intergenic
AGGAAATCACCATCTGCATT+TGG 0.421394 1_2:+43600959 None:intergenic
GCCGCTGAATTAGGGTCGGC+GGG 0.424159 1_2:+43602721 None:intergenic
AGCTTACATGCTCAAGGGTC+AGG 0.425924 1_2:-43602661 Msa0071550:CDS
AGTTCTGGTGTTGTTGGTGG+TGG 0.426204 1_2:+43602866 None:intergenic
CGTGTTCCCATTGGTGGGTC+GGG 0.428031 1_2:-43602628 Msa0071550:CDS
TTATATCATAAAGTTTCAAT+TGG 0.431070 1_2:-43598974 Msa0071550:three_prime_UTR
TGAATCCACACGCGCTACTC+AGG 0.434230 1_2:-43602695 Msa0071550:CDS
AGTGGAGAAGGTGGTTCTGT+TGG 0.435026 1_2:-43602424 Msa0071550:CDS
TGAAATCTATGTGTTTACTT+CGG 0.438885 1_2:-43599166 Msa0071550:three_prime_UTR
TTGGGAGAAGATGATAGCTT+TGG 0.441809 1_2:-43600808 Msa0071550:CDS
CATGTGTTTGTCTGAATCCT+TGG 0.446993 1_2:+43600351 None:intergenic
GAATCTTCAACTGCGGTTAG+TGG 0.448461 1_2:-43602442 Msa0071550:CDS
CACATGCTTGCAAAACAAAC+AGG 0.449703 1_2:-43600334 Msa0071550:CDS
CTGGTGTTGTTGGTGGTGGA+GGG 0.450438 1_2:+43602870 None:intergenic
AGAGCTGCGAATAAGAGTTT+GGG 0.451616 1_2:-43600826 Msa0071550:CDS
AGCTTTGGTGGCAAAATTGA+AGG 0.452290 1_2:-43600793 Msa0071550:CDS
AATCTTCCGATTTCCTCCAT+TGG 0.452740 1_2:+43599679 None:intergenic
GAATTGGATTATTCTAGTAT+AGG 0.454575 1_2:-43599107 Msa0071550:three_prime_UTR
GAACTCAAATGGTTCTATGC+AGG 0.455814 1_2:+43599077 None:intergenic
AGAACAGAAACAGATCTTTC+GGG 0.455936 1_2:+43600670 None:intergenic
TTGGTGGTGGTGATGGAAAT+GGG 0.457024 1_2:-43602405 Msa0071550:CDS
GAGGTCTCCAAGCATTATGA+TGG 0.458928 1_2:+43600704 None:intergenic
AGGGAAATAGATGATACAAT+CGG 0.464146 1_2:-43599391 Msa0071550:three_prime_UTR
AGAGATGGTTATTGTTTCAT+GGG 0.464621 1_2:-43599739 Msa0071550:CDS
GGAGAAGATGATAGCTTTGG+TGG 0.464797 1_2:-43600805 Msa0071550:CDS
TGGAGATTGTTTGTAGCGCT+AGG 0.469541 1_2:+43600890 None:intergenic
AATGGTGTTTCACTCACTCT+TGG 0.469626 1_2:-43599616 Msa0071550:CDS
TTTGCTTGATTTGTTGTCCT+CGG 0.470961 1_2:+43600080 None:intergenic
ATGTACATTTCCTCCACCAT+TGG 0.475080 1_2:+43600135 None:intergenic
CATTCAACTAGGAAGAAGAT+TGG 0.477777 1_2:-43599536 Msa0071550:CDS
GCGTGTTCCCATTGGTGGGT+CGG 0.478334 1_2:-43602629 Msa0071550:CDS
CAAAGAGCTATTCAACAATT+GGG 0.478974 1_2:-43600733 Msa0071550:CDS
GAGATAAGTTCTGGTGTTGT+TGG 0.480326 1_2:+43602860 None:intergenic
CAATATCCAATGGAGGAAAT+CGG 0.481438 1_2:-43599685 Msa0071550:CDS
CATAAAACATATATTCTCAA+TGG 0.482468 1_2:+43598931 None:intergenic
TGGCATAAATAAGACATTGA+AGG 0.484822 1_2:-43599411 Msa0071550:exon
AGGTTACCGGCGTGTGGCGG+CGG 0.487521 1_2:+43602934 None:intergenic
GACGAACCCGACCCACCAAT+GGG 0.487772 1_2:+43602622 None:intergenic
GGGAAATAGATGATACAATC+GGG 0.489001 1_2:-43599390 Msa0071550:three_prime_UTR
ACATAGATCATATATATAAG+AGG 0.491525 1_2:-43604117 Msa0071550:intron
GACGCGCGTGTTCCCATTGG+TGG 0.492130 1_2:-43602634 Msa0071550:CDS
TCGGTGATTGAAGAATTTCA+TGG 0.493060 1_2:+43599836 None:intergenic
TTGAGTTCTTAGATAGCATA+GGG 0.494340 1_2:-43599062 Msa0071550:three_prime_UTR
GAAGGTGGTTCTGTTGGTGG+TGG 0.495223 1_2:-43602418 Msa0071550:CDS
CCGCAACCGCCGCCACACGC+CGG 0.496101 1_2:-43602940 Msa0071550:CDS
ATGCTATCTAAGAACTCAAA+TGG 0.497030 1_2:+43599066 None:intergenic
AAAATATGAAAATGTAATTG+AGG 0.497842 1_2:+43604607 None:intergenic
TGGCGGCGGTTGCGGCGCGT+CGG 0.498231 1_2:+43602948 None:intergenic
GTGGCAAAATTGAAGGGTCT+AGG 0.499962 1_2:-43600786 Msa0071550:CDS
GATTTGAAAGTATATGGTTG+AGG 0.502878 1_2:-43599040 Msa0071550:three_prime_UTR
CTGATTGTTCTGCCGAGAGC+GGG 0.508560 1_2:+43602812 None:intergenic
GAATGATCCATCATAATGCT+TGG 0.508715 1_2:-43600711 Msa0071550:CDS
TTCCAAACAAGACATTCCTA+TGG 0.509814 1_2:-43599974 Msa0071550:CDS
GAGAAACACAATCATTGCTA+TGG 0.514493 1_2:+43599200 None:intergenic
AACTCAAATGGTTCTATGCA+GGG 0.514516 1_2:+43599078 None:intergenic
AATGTACATGGAAGAGATGA+AGG 0.518111 1_2:-43600121 Msa0071550:CDS
CATAATAATTCAGAAATCCA+AGG 0.518498 1_2:-43603030 Msa0071550:CDS
CAATTCAGGATTCAGCTTCA+CGG 0.521074 1_2:-43599902 Msa0071550:CDS
AAAAGAGAAAGAGAGAGAGA+GGG 0.521134 1_2:+43604504 None:intergenic
TTGTAGTGTATAAAGAAAGA+AGG 0.523070 1_2:-43599129 Msa0071550:three_prime_UTR
CGCCGCTGAATTAGGGTCGG+CGG 0.525952 1_2:+43602720 None:intergenic
CGCGCATGCGGTACAACATG+TGG 0.526523 1_2:-43602747 Msa0071550:CDS
TCATTAAGCTTACATGCTCA+AGG 0.530266 1_2:-43602667 Msa0071550:CDS
TCATGAAAATGAGTGTTTGA+AGG 0.530375 1_2:+43602995 None:intergenic
GAATCCACACGCGCTACTCA+GGG 0.533677 1_2:-43602694 Msa0071550:CDS
AACTTTCAGTTGCAAGTGGA+AGG 0.533964 1_2:-43604161 Msa0071550:intron
CAATTTACATCACAATCTGC+AGG 0.534042 1_2:-43603843 Msa0071550:five_prime_UTR
ATGTACGCTTCTCTTACTGC+AGG 0.535012 1_2:-43599233 Msa0071550:three_prime_UTR
AGACGAACCCGACCCACCAA+TGG 0.537440 1_2:+43602621 None:intergenic
GGCATAAATAAGACATTGAA+GGG 0.538304 1_2:-43599410 Msa0071550:exon
ATGTGTTTGTCTGAATCCTT+GGG 0.538305 1_2:+43600352 None:intergenic
ATAAGTTCTGGTGTTGTTGG+TGG 0.538740 1_2:+43602863 None:intergenic
GTTTGTCGGAGTCCCGCTCT+CGG 0.541545 1_2:-43602824 Msa0071550:CDS
AACAGGACTTACTAGGAGCC+AGG 0.541927 1_2:-43600317 Msa0071550:intron
TTGTAGCGCTAGGGCAGTGT+AGG 0.542393 1_2:+43600900 None:intergenic
TCAACTGCGGTTAGTGGAGA+AGG 0.547613 1_2:-43602436 Msa0071550:CDS
TTATTATTACCTGAAAACCT+TGG 0.548405 1_2:+43599637 None:intergenic
ATTCGCAGCTCTAATTTGGC+CGG 0.548463 1_2:+43600837 None:intergenic
GTTAATTAACATGCTTGATG+AGG 0.549695 1_2:-43602323 Msa0071550:intron
CACGCGCCACCACAGTTTGT+CGG 0.549865 1_2:-43602838 Msa0071550:CDS
AGAAGCGTACATTTACATGT+TGG 0.550105 1_2:+43599244 None:intergenic
AACTCAGCCGGCAATCACCC+CGG 0.551055 1_2:-43602901 Msa0071550:CDS
TCGGGTTCGTCTGCTTCAAA+CGG 0.552442 1_2:-43602610 Msa0071550:CDS
GGAGATTGTTTGTAGCGCTA+GGG 0.553654 1_2:+43600891 None:intergenic
TTTGAGTTCTTAGATAGCAT+AGG 0.555623 1_2:-43599063 Msa0071550:three_prime_UTR
GTGGCGCGTGAGATAAGTTC+TGG 0.557053 1_2:+43602851 None:intergenic
AGTTCGTCTTTGGAAACCAA+TGG 0.560987 1_2:-43600151 Msa0071550:CDS
GATGATAGACAAAGTAGAGA+TGG 0.562540 1_2:-43599754 Msa0071550:CDS
ACACCAATAGGTGAAGTTGA+TGG 0.562831 1_2:+43599937 None:intergenic
AAATATGAAAATGTAATTGA+GGG 0.562854 1_2:+43604608 None:intergenic
GAGGACGCGCGTGTTCCCAT+TGG 0.566554 1_2:-43602637 Msa0071550:CDS
ATGGCTTCCCACCGCGCATG+CGG 0.566720 1_2:-43602759 Msa0071550:CDS
GAGTAATTGATGTAACCTGA+TGG 0.567818 1_2:+43602970 None:intergenic
GAAGTTGTTAATGTTAATGG+TGG 0.567999 1_2:-43602517 Msa0071550:CDS
CTTCAAACGGCTGTGTTTCG+GGG 0.569323 1_2:-43602597 Msa0071550:CDS
TCTTTGGAAACCAATGGTGG+AGG 0.574109 1_2:-43600145 Msa0071550:CDS
GAAGGCCGTCAGAACCACCT+TGG 0.574186 1_2:+43603013 None:intergenic
CAGCCCCTGAGTAGCGCGTG+TGG 0.574542 1_2:+43602690 None:intergenic
ATGAAGGATCAAGAGCTGAA+TGG 0.575119 1_2:-43600105 Msa0071550:CDS
GAAATCCAAGGTGGTTCTGA+CGG 0.578996 1_2:-43603018 Msa0071550:CDS
TGTTGTACCGCATGCGCGGT+GGG 0.579687 1_2:+43602752 None:intergenic
CCAAACCAAAACATTCAACT+AGG 0.581717 1_2:-43599547 Msa0071550:CDS
GTTTGATTTCAGTTATCCCA+AGG 0.585733 1_2:-43600368 Msa0071550:intron
ATTCAACTTTCAGTTGCAAG+TGG 0.592682 1_2:-43604165 Msa0071550:intron
ACGCGCGTGTTCCCATTGGT+GGG 0.596736 1_2:-43602633 Msa0071550:CDS
TAATATATATTTCTTAGCAT+AGG 0.597273 1_2:-43604549 Msa0071550:five_prime_UTR
AAATCTATGTGTTTACTTCG+GGG 0.600483 1_2:-43599164 Msa0071550:three_prime_UTR
AAGCAAGTCCAAAGCGAACG+AGG 0.604196 1_2:-43599861 Msa0071550:CDS
AATGGTGGAGGAAATGTACA+TGG 0.609719 1_2:-43600133 Msa0071550:CDS
TGTTGGAGAATCTTCAACTG+CGG 0.611838 1_2:-43602449 Msa0071550:CDS
CCCCGCCGACCCTAATTCAG+CGG 0.612266 1_2:-43602722 Msa0071550:CDS
TGGTTTCGGTCAATATCCAA+TGG 0.615136 1_2:-43599695 Msa0071550:CDS
ATGTTGTACCGCATGCGCGG+TGG 0.615571 1_2:+43602751 None:intergenic
TCGTCTTTGGAAACCAATGG+TGG 0.617524 1_2:-43600148 Msa0071550:CDS
CACATGTTGTACCGCATGCG+CGG 0.618509 1_2:+43602748 None:intergenic
TGCGAGATGCAATCATCGCA+AGG 0.618956 1_2:+43599356 None:intergenic
TCGGCAGAACAATCAGTACA+TGG 0.621271 1_2:-43602805 Msa0071550:CDS
TTTCATCGAAGGATCGTCAT+CGG 0.623127 1_2:+43600053 None:intergenic
GAGGTTGGAACTCTTTCTTG+TGG 0.623921 1_2:+43600021 None:intergenic
GCTTTGGTGGCAAAATTGAA+GGG 0.625009 1_2:-43600792 Msa0071550:CDS
AATATGAAAATGTAATTGAG+GGG 0.625866 1_2:+43604609 None:intergenic
AAGTTGTTAATGTTAATGGT+GGG 0.628751 1_2:-43602516 Msa0071550:CDS
GCAAAGCAGAAACCTCATGA+TGG 0.629561 1_2:+43602782 None:intergenic
TGTTCGATCTAAATCAATGA+CGG 0.630544 1_2:-43599318 Msa0071550:three_prime_UTR
ATATCACAACCAAATGCAGA+TGG 0.632389 1_2:-43600968 Msa0071550:CDS
ACGCGCCGCTGAATTAGGGT+CGG 0.633078 1_2:+43602717 None:intergenic
CATTAAGCTTACATGCTCAA+GGG 0.634278 1_2:-43602666 Msa0071550:CDS
ATCAGTACATGGCCATCATG+AGG 0.634995 1_2:-43602794 Msa0071550:CDS
ATGCGGAACAATTTGCACCA+AGG 0.636094 1_2:-43599654 Msa0071550:CDS
AGCGGGACTCCGACAAACTG+TGG 0.637468 1_2:+43602829 None:intergenic
TCCTGCAACTTGTTCAAACG+AGG 0.638911 1_2:+43600939 None:intergenic
TCAACATGCAGAATCCAAAG+AGG 0.639986 1_2:-43599462 Msa0071550:CDS
ACTGATTGTTCTGCCGAGAG+CGG 0.645804 1_2:+43602811 None:intergenic
GGTGTTGAAACTGAAACCAT+AGG 0.645975 1_2:+43599958 None:intergenic
ACAAGGTTACCGGCGTGTGG+CGG 0.649540 1_2:+43602931 None:intergenic
AAAACAAGGTTACCGGCGTG+TGG 0.650178 1_2:+43602928 None:intergenic
ACTGCGGTTAGTGGAGAAGG+TGG 0.650559 1_2:-43602433 Msa0071550:CDS
TGTACGCTTCTCTTACTGCA+GGG 0.650978 1_2:-43599232 Msa0071550:three_prime_UTR
GGTGGAGGGAAGTGTTGCCG+GGG 0.656423 1_2:+43602884 None:intergenic
GGAAATAGATGATACAATCG+GGG 0.660049 1_2:-43599389 Msa0071550:three_prime_UTR
TCAAGAGCTGAATGGTTCCG+AGG 0.663324 1_2:-43600097 Msa0071550:CDS
GGAAATCGGAAGATTTGATG+CGG 0.664371 1_2:-43599671 Msa0071550:CDS
CCTGATAATGTGTCACAATG+AGG 0.665244 1_2:+43599589 None:intergenic
ACATGCTCAAGGGTCAGGCG+AGG 0.668836 1_2:-43602656 Msa0071550:CDS
TGTGAATAGATCAAAACATG+AGG 0.668986 1_2:+43604370 None:intergenic
ACAAGAAAGAGTTCCAACCT+CGG 0.675024 1_2:-43600019 Msa0071550:CDS
AAAATCCGGTAACAATTGTG+CGG 0.678724 1_2:+43599435 None:intergenic
GGGACTCCGACAAACTGTGG+TGG 0.685917 1_2:+43602832 None:intergenic
AATGCTTGGAGACCTCAAAG+AGG 0.697679 1_2:-43600697 Msa0071550:CDS
TTTCGGTCAATATCCAATGG+AGG 0.697787 1_2:-43599692 Msa0071550:CDS
AATCCACACGCGCTACTCAG+GGG 0.701184 1_2:-43602693 Msa0071550:CDS
AATAATTCAGAAATCCAAGG+TGG 0.720775 1_2:-43603027 Msa0071550:CDS
GAAATAGATGATACAATCGG+GGG 0.724064 1_2:-43599388 Msa0071550:three_prime_UTR
CCGCTGAATTAGGGTCGGCG+GGG 0.731123 1_2:+43602722 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTATCATATCTTTAATT+TGG - chr1_2:43599979-43599998 Msa0071550:CDS 10.0%
!! TCAAAAAAAAAAACAATATT+AGG + chr1_2:43601267-43601286 None:intergenic 10.0%
!!! ACTCAAATTTATTTAATTTT+TGG - chr1_2:43601576-43601595 Msa0071550:intron 10.0%
!! AAAAAAAGGATAAAAAAAAA+CGG + chr1_2:43601935-43601954 None:intergenic 10.0%
!!! TTGTTTTCTTAAAAAAAAAA+AGG + chr1_2:43601949-43601968 None:intergenic 10.0%
!! AAAAAAAAGGATAAAAAAAA+CGG + chr1_2:43601936-43601955 None:intergenic 10.0%
!!! TTTTTTATCCTTTTTTTTTA+AGG - chr1_2:43602039-43602058 Msa0071550:intron 10.0%
!!! AAATCTAAAAACTAAAATTT+TGG + chr1_2:43602256-43602275 None:intergenic 10.0%
!!! TAAATTAACATTTTAGTTTT+TGG - chr1_2:43602933-43602952 Msa0071550:CDS 10.0%
!! TTAAAAAATTACTAAATTGA+CGG + chr1_2:43603003-43603022 None:intergenic 10.0%
!! AAATATGAAAATGTAATTGA+GGG + chr1_2:43598894-43598913 None:intergenic 15.0%
!! AAAATATGAAAATGTAATTG+AGG + chr1_2:43598895-43598914 None:intergenic 15.0%
!! TAATATATATTTCTTAGCAT+AGG - chr1_2:43598950-43598969 Msa0071550:three_prime_UTR 15.0%
!!! TTTTTCATAATTGAAATTCT+GGG + chr1_2:43599248-43599267 None:intergenic 15.0%
!!! TTTTTTCATAATTGAAATTC+TGG + chr1_2:43599249-43599268 None:intergenic 15.0%
!! TTATATATATGATCTATGTT+TGG + chr1_2:43599381-43599400 None:intergenic 15.0%
!!! CTGTAAAATATATATTGTTT+TGG - chr1_2:43599499-43599518 Msa0071550:CDS 15.0%
!!! AAAATATATATTGTTTTGGT+AGG - chr1_2:43599503-43599522 Msa0071550:CDS 15.0%
!!! AAATAGAAATCTTTTGTTTT+TGG + chr1_2:43599565-43599584 None:intergenic 15.0%
!! ATTTCATCTATACTTTAATT+TGG - chr1_2:43599940-43599959 Msa0071550:CDS 15.0%
!!! AAAAGTATAATCAATTAACA+TGG + chr1_2:43600043-43600062 None:intergenic 15.0%
!! AAAAAAAAAAAACTCTTATG+TGG + chr1_2:43600213-43600232 None:intergenic 15.0%
!!! GAGTTAATTAAATTTAGTTT+TGG - chr1_2:43601207-43601226 Msa0071550:intron 15.0%
!!! TTACTTTTTAAGTATGATTA+AGG - chr1_2:43601442-43601461 Msa0071550:intron 15.0%
!!! AGAATTTATGTTTTTTAGAA+TGG - chr1_2:43601474-43601493 Msa0071550:intron 15.0%
!! AATTGTTTCCTTAAAAAAAA+AGG + chr1_2:43602050-43602069 None:intergenic 15.0%
!!! TTAAAAAAAAAAAACGGATT+CGG + chr1_2:43602142-43602161 None:intergenic 15.0%
!! GTTTCCTTAAAAAAAAAAAA+CGG + chr1_2:43602148-43602167 None:intergenic 15.0%
!!! TAAAAACTAAAATTTTGGAA+AGG + chr1_2:43602251-43602270 None:intergenic 15.0%
!!! TCTATCATTTTAAAATTCTA+AGG - chr1_2:43602290-43602309 Msa0071550:intron 15.0%
!! ATACTAAAAATGAATTAATG+TGG - chr1_2:43602462-43602481 Msa0071550:CDS 15.0%
!!! TTTTATGATACTATTAGAAA+AGG - chr1_2:43602903-43602922 Msa0071550:CDS 15.0%
!! TTATATCATAAAGTTTCAAT+TGG - chr1_2:43604525-43604544 Msa0071550:five_prime_UTR 15.0%
!! ATAAGAAAAATAAAAGAAAG+TGG + chr1_2:43604638-43604657 None:intergenic 15.0%
!! AATATGAAAATGTAATTGAG+GGG + chr1_2:43598893-43598912 None:intergenic 20.0%
!!! ATTTTTTGTCCATAAATGAT+TGG - chr1_2:43599274-43599293 Msa0071550:intron 20.0%
!! TCATATTATCCAATCATTTA+TGG + chr1_2:43599286-43599305 None:intergenic 20.0%
!! ACATAGATCATATATATAAG+AGG - chr1_2:43599382-43599401 Msa0071550:three_prime_UTR 20.0%
!!! AAAAGATTTCTATTTCTCAT+AGG - chr1_2:43599570-43599589 Msa0071550:CDS 20.0%
!!! TTTTCTTTTAGTACAGAAAA+AGG + chr1_2:43599805-43599824 None:intergenic 20.0%
!!! AAATTCTTTTAATCTCATAG+TGG + chr1_2:43599903-43599922 None:intergenic 20.0%
!! TCTCAATAATTGAAGAAAAA+TGG + chr1_2:43600115-43600134 None:intergenic 20.0%
!! TCTTACACAAAAAAATTTGA+TGG - chr1_2:43600435-43600454 Msa0071550:intron 20.0%
!! AATTTGATAGGAACTAAATT+TGG + chr1_2:43601303-43601322 None:intergenic 20.0%
!! TTAATTCATGTTTGATTCTA+TGG + chr1_2:43601684-43601703 None:intergenic 20.0%
!! AAAAAAAAATATGCAAGATC+CGG - chr1_2:43601766-43601785 Msa0071550:intron 20.0%
!!! TTTTTTTTTTTTGTGATGGT+CGG + chr1_2:43601887-43601906 None:intergenic 20.0%
!!! TGTTCATTGGTTTTTTTTTT+TGG + chr1_2:43602110-43602129 None:intergenic 20.0%
!!! GAATCCGTTTTTTTTTTTTA+AGG - chr1_2:43602141-43602160 Msa0071550:intron 20.0%
!!! ATTTCTTGCAAATACTTTTA+TGG + chr1_2:43602348-43602367 None:intergenic 20.0%
!! TATTGATCATGTTAACAATA+TGG - chr1_2:43603294-43603313 Msa0071550:intron 20.0%
!!! ATTATTAGTTGTTGTTTCAT+TGG + chr1_2:43603701-43603720 None:intergenic 20.0%
!! GAACAAATTTCAATGAAATT+TGG - chr1_2:43603721-43603740 Msa0071550:intron 20.0%
!!! ATTTTTGTAAGTTTTGAAGA+TGG - chr1_2:43604491-43604510 Msa0071550:five_prime_UTR 20.0%
!!! TTTTTGTAAGTTTTGAAGAT+GGG - chr1_2:43604492-43604511 Msa0071550:five_prime_UTR 20.0%
!! CATAAAACATATATTCTCAA+TGG + chr1_2:43604571-43604590 None:intergenic 20.0%
!!! CATTGAGAATATATGTTTTA+TGG - chr1_2:43604569-43604588 Msa0071550:five_prime_UTR 20.0%
!! TAAAAGAAAGTGGTAATAAT+TGG + chr1_2:43604628-43604647 None:intergenic 20.0%
!!! ATCTTTCTATAGCCTTTTTT+GGG + chr1_2:43599166-43599185 None:intergenic 25.0%
!!! TATCTTTCTATAGCCTTTTT+TGG + chr1_2:43599167-43599186 None:intergenic 25.0%
! AGATCATATATATAAGAGGT+TGG - chr1_2:43599386-43599405 Msa0071550:three_prime_UTR 25.0%
! TATAAGGACTTAAAAAGGAA+AGG + chr1_2:43599876-43599895 None:intergenic 25.0%
! GACTATATAAGGACTTAAAA+AGG + chr1_2:43599881-43599900 None:intergenic 25.0%
! AAATTCACAATTTGACATCT+TGG + chr1_2:43600309-43600328 None:intergenic 25.0%
!!! TCTATTTTTTTTCAGAGTGA+AGG - chr1_2:43600401-43600420 Msa0071550:intron 25.0%
!!! CTATTTTTTTTCAGAGTGAA+GGG - chr1_2:43600402-43600421 Msa0071550:intron 25.0%
! CATAATAATTCAGAAATCCA+AGG - chr1_2:43600469-43600488 Msa0071550:intron 25.0%
! GATGAAGTTGTTAATGTTAA+TGG - chr1_2:43600979-43600998 Msa0071550:CDS 25.0%
! AAGTTGTTAATGTTAATGGT+GGG - chr1_2:43600983-43601002 Msa0071550:CDS 25.0%
!!! GAAGAGTTTTGAGAAAAATA+AGG - chr1_2:43601026-43601045 Msa0071550:intron 25.0%
! TTTGAGAAAAATAAGGTTGT+TGG - chr1_2:43601033-43601052 Msa0071550:intron 25.0%
! CTTGAAAGAACAAATTTGAT+AGG + chr1_2:43601315-43601334 None:intergenic 25.0%
!!! TGTTTTTTTGACAGATAGAA+TGG - chr1_2:43601505-43601524 Msa0071550:intron 25.0%
!! GAATGGTTTTTATGCAAAAT+AGG - chr1_2:43601522-43601541 Msa0071550:intron 25.0%
! AAAAAAAATATGCAAGATCC+GGG - chr1_2:43601767-43601786 Msa0071550:intron 25.0%
!!! TTTTTTTTTTTGTGATGGTC+GGG + chr1_2:43601886-43601905 None:intergenic 25.0%
!!! TGGGTTTTTTTTTTTTGTGA+TGG + chr1_2:43601891-43601910 None:intergenic 25.0%
!! AGGATAAAAAAAAACGGATT+CGG + chr1_2:43601929-43601948 None:intergenic 25.0%
!!! ATTGGTAATTTTTTTTGTGG+TGG + chr1_2:43602008-43602027 None:intergenic 25.0%
!! AAGGATAAAAAAAACGGATT+CGG + chr1_2:43602031-43602050 None:intergenic 25.0%
!!! TCATTGGTTTTTTTTTTTGG+TGG + chr1_2:43602107-43602126 None:intergenic 25.0%
!!! ACTAAAATTTTGGAAAGGAA+AGG + chr1_2:43602246-43602265 None:intergenic 25.0%
! ATGAATTAATGTGGTTTCTT+TGG - chr1_2:43602471-43602490 Msa0071550:CDS 25.0%
!! TTTTAAACATCGAAATTGCT+TGG + chr1_2:43602632-43602651 None:intergenic 25.0%
! TGTTTAAAAGATGCAATTAC+CGG - chr1_2:43602643-43602662 Msa0071550:CDS 25.0%
!! GATATATTCAGGTCTTTTAT+TGG - chr1_2:43603087-43603106 Msa0071550:intron 25.0%
!!! TTGTTTGGAATTGAAACTTT+TGG + chr1_2:43603515-43603534 None:intergenic 25.0%
! TTATTATTACCTGAAAACCT+TGG + chr1_2:43603865-43603884 None:intergenic 25.0%
!!! AGGTTTTCAGGTAATAATAA+TGG - chr1_2:43603865-43603884 Msa0071550:five_prime_UTR 25.0%
! TGAAATCTATGTGTTTACTT+CGG - chr1_2:43604333-43604352 Msa0071550:intron 25.0%
! TTGTAGTGTATAAAGAAAGA+AGG - chr1_2:43604370-43604389 Msa0071550:five_prime_UTR 25.0%
! TGTATAAAGAAAGAAGGAAT+TGG - chr1_2:43604376-43604395 Msa0071550:five_prime_UTR 25.0%
! GAATTGGATTATTCTAGTAT+AGG - chr1_2:43604392-43604411 Msa0071550:five_prime_UTR 25.0%
!!! CTTAGAACTATTTTTTTGGG+GGG + chr1_2:43599030-43599049 None:intergenic 30.0%
!!! CCTTAGAACTATTTTTTTGG+GGG + chr1_2:43599031-43599050 None:intergenic 30.0%
!!! CCCTTAGAACTATTTTTTTG+GGG + chr1_2:43599032-43599051 None:intergenic 30.0%
!! CCCCAAAAAAATAGTTCTAA+GGG - chr1_2:43599029-43599048 Msa0071550:three_prime_UTR 30.0%
!!! CCCCTTAGAACTATTTTTTT+GGG + chr1_2:43599033-43599052 None:intergenic 30.0%
!! CCCAAAAAAATAGTTCTAAG+GGG - chr1_2:43599030-43599049 Msa0071550:three_prime_UTR 30.0%
!! CCAAAAAAATAGTTCTAAGG+GGG - chr1_2:43599031-43599050 Msa0071550:three_prime_UTR 30.0%
TGTGAATAGATCAAAACATG+AGG + chr1_2:43599132-43599151 None:intergenic 30.0%
!!! TCATGTTTTGATCTATTCAC+AGG - chr1_2:43599131-43599150 Msa0071550:three_prime_UTR 30.0%
!!! TCTTTCTATAGCCTTTTTTG+GGG + chr1_2:43599165-43599184 None:intergenic 30.0%
! AAGCTTTTTACAAAGGATAG+TGG + chr1_2:43599834-43599853 None:intergenic 30.0%
!! ATCTCATAGTGGACTATATA+AGG + chr1_2:43599892-43599911 None:intergenic 30.0%
AATAATTCAGAAATCCAAGG+TGG - chr1_2:43600472-43600491 Msa0071550:intron 30.0%
TCATGAAAATGAGTGTTTGA+AGG + chr1_2:43600507-43600526 None:intergenic 30.0%
GAAGTTGTTAATGTTAATGG+TGG - chr1_2:43600982-43601001 Msa0071550:CDS 30.0%
! TAATGTTAATGGTGGGATTA+AGG - chr1_2:43600990-43601009 Msa0071550:CDS 30.0%
GTTAATTAACATGCTTGATG+AGG - chr1_2:43601176-43601195 Msa0071550:intron 30.0%
! GTTCTTTCAAGTAATTGAGT+TGG - chr1_2:43601324-43601343 Msa0071550:intron 30.0%
ATTCATGTTTGATTCTATGG+TGG + chr1_2:43601681-43601700 None:intergenic 30.0%
AGTTGGTCATGGTTTAATAA+AGG + chr1_2:43601707-43601726 None:intergenic 30.0%
AAAAAAATATGCAAGATCCG+GGG - chr1_2:43601768-43601787 Msa0071550:intron 30.0%
!!! TTTTTTTTTTGTGATGGTCG+GGG + chr1_2:43601885-43601904 None:intergenic 30.0%
! AAAAAAAAACGGATTCGGAT+TGG + chr1_2:43601924-43601943 None:intergenic 30.0%
!!! CGGATTGGTAATTTTTTTTG+TGG + chr1_2:43602011-43602030 None:intergenic 30.0%
! TAAAAAAAACGGATTCGGAT+TGG + chr1_2:43602026-43602045 None:intergenic 30.0%
! AAAAAAAAACGGATTCGGAT+TGG + chr1_2:43601924-43601943 None:intergenic 30.0%
!! AAAATTTTGGAAAGGAAAGG+AGG + chr1_2:43602243-43602262 None:intergenic 30.0%
!!! TTTGGATTGTTTTGGTTTGA+AGG - chr1_2:43602489-43602508 Msa0071550:CDS 30.0%
ACAAAGAGCTATTCAACAAT+TGG - chr1_2:43602765-43602784 Msa0071550:CDS 30.0%
CAAAGAGCTATTCAACAATT+GGG - chr1_2:43602766-43602785 Msa0071550:CDS 30.0%
AAGAACAGAAACAGATCTTT+CGG + chr1_2:43602833-43602852 None:intergenic 30.0%
! AAAAGTATAGCGAGTACTTA+CGG + chr1_2:43602886-43602905 None:intergenic 30.0%
!!! GTTTTTGGAATTGAAAGAGT+CGG - chr1_2:43602948-43602967 Msa0071550:CDS 30.0%
TCATTGAAGTCGATATATTC+AGG - chr1_2:43603076-43603095 Msa0071550:intron 30.0%
CACTTAATAAAGAAGTAAGG+AGG + chr1_2:43603211-43603230 None:intergenic 30.0%
CGACACTTAATAAAGAAGTA+AGG + chr1_2:43603214-43603233 None:intergenic 30.0%
TCATGTTAACAATATGGTAC+AGG - chr1_2:43603300-43603319 Msa0071550:intron 30.0%
ATATGGTACAGGTTTCAAAT+TGG - chr1_2:43603311-43603330 Msa0071550:intron 30.0%
TTTCTAACATTCACACCAAT+AGG + chr1_2:43603577-43603596 None:intergenic 30.0%
GTGAATGTTAGAAACAATTC+AGG - chr1_2:43603583-43603602 Msa0071550:intron 30.0%
TAGAGATGGTTATTGTTTCA+TGG - chr1_2:43603759-43603778 Msa0071550:intron 30.0%
AGAGATGGTTATTGTTTCAT+GGG - chr1_2:43603760-43603779 Msa0071550:intron 30.0%
AACCAAACTAATTTCATTGC+TGG - chr1_2:43603784-43603803 Msa0071550:intron 30.0%
AACCAGCAATGAAATTAGTT+TGG + chr1_2:43603789-43603808 None:intergenic 30.0%
!! ACTAATTTCATTGCTGGTTT+CGG - chr1_2:43603790-43603809 Msa0071550:intron 30.0%
! TTCTTCCTAGTTGAATGTTT+TGG + chr1_2:43603960-43603979 None:intergenic 30.0%
ATTAGCGAAACAAATGAGTT+TGG - chr1_2:43603988-43604007 Msa0071550:intron 30.0%
CTTATTTATGCCACAAAATC+CGG + chr1_2:43604081-43604100 None:intergenic 30.0%
TGGCATAAATAAGACATTGA+AGG - chr1_2:43604088-43604107 Msa0071550:intron 30.0%
GGCATAAATAAGACATTGAA+GGG - chr1_2:43604089-43604108 Msa0071550:intron 30.0%
AGGGAAATAGATGATACAAT+CGG - chr1_2:43604108-43604127 Msa0071550:intron 30.0%
TGTTCGATCTAAATCAATGA+CGG - chr1_2:43604181-43604200 Msa0071550:intron 30.0%
GAAATCTATGTGTTTACTTC+GGG - chr1_2:43604334-43604353 Msa0071550:intron 30.0%
AAATCTATGTGTTTACTTCG+GGG - chr1_2:43604335-43604354 Msa0071550:intron 30.0%
ATGCTATCTAAGAACTCAAA+TGG + chr1_2:43604436-43604455 None:intergenic 30.0%
! TTTGAGTTCTTAGATAGCAT+AGG - chr1_2:43604436-43604455 Msa0071550:five_prime_UTR 30.0%
TTGAGTTCTTAGATAGCATA+GGG - chr1_2:43604437-43604456 Msa0071550:five_prime_UTR 30.0%
! CATAGGGATTTGAAAGTATA+TGG - chr1_2:43604453-43604472 Msa0071550:five_prime_UTR 30.0%
! GATTTGAAAGTATATGGTTG+AGG - chr1_2:43604459-43604478 Msa0071550:five_prime_UTR 30.0%
AAAAGAGAAAGAGAGAGAGA+GGG + chr1_2:43598998-43599017 None:intergenic 35.0%
AAAAAGAGAAAGAGAGAGAG+AGG + chr1_2:43598999-43599018 None:intergenic 35.0%
! CCCCCAAAAAAATAGTTCTA+AGG - chr1_2:43599028-43599047 Msa0071550:three_prime_UTR 35.0%
!!! CCCCCTTAGAACTATTTTTT+TGG + chr1_2:43599034-43599053 None:intergenic 35.0%
!!! CTTTCTATAGCCTTTTTTGG+GGG + chr1_2:43599164-43599183 None:intergenic 35.0%
ATTCAACTTTCAGTTGCAAG+TGG - chr1_2:43599334-43599353 Msa0071550:three_prime_UTR 35.0%
CAATTTACATCACAATCTGC+AGG - chr1_2:43599656-43599675 Msa0071550:CDS 35.0%
! AGAAGAGAAGTACAAAGAGT+AGG + chr1_2:43599765-43599784 None:intergenic 35.0%
! CACATGGAAGCTTTTTACAA+AGG + chr1_2:43599841-43599860 None:intergenic 35.0%
AAGGAATGATGAGATACACA+TGG + chr1_2:43599857-43599876 None:intergenic 35.0%
! TCTGGTTGGTGTATAATTTG+TGG + chr1_2:43600156-43600175 None:intergenic 35.0%
TTTACCTTTGTGAATCTGGT+TGG + chr1_2:43600170-43600189 None:intergenic 35.0%
ACCAGATTCACAAAGGTAAA+AGG - chr1_2:43600170-43600189 Msa0071550:CDS 35.0%
! ACCTTTTACCTTTGTGAATC+TGG + chr1_2:43600174-43600193 None:intergenic 35.0%
! CTCATTTTCATGAATCCATC+AGG - chr1_2:43600514-43600533 Msa0071550:intron 35.0%
GAGTAATTGATGTAACCTGA+TGG + chr1_2:43600532-43600551 None:intergenic 35.0%
GTTGAGAAAAACAAGGTTAC+CGG + chr1_2:43600581-43600600 None:intergenic 35.0%
TCATTAAGCTTACATGCTCA+AGG - chr1_2:43600832-43600851 Msa0071550:CDS 35.0%
CATTAAGCTTACATGCTCAA+GGG - chr1_2:43600833-43600852 Msa0071550:CDS 35.0%
!! CAAGTAATTGAGTTGGTAAC+TGG - chr1_2:43601331-43601350 Msa0071550:intron 35.0%
!!! AACCCTTTTTTTGTGATGGT+CGG + chr1_2:43601830-43601849 None:intergenic 35.0%
!!! TTCGAACCCTTTTTTTGTGA+TGG + chr1_2:43601834-43601853 None:intergenic 35.0%
!! TCGGATTGGTAATTGTTCAT+GGG + chr1_2:43601910-43601929 None:intergenic 35.0%
!! TTCGGATTGGTAATTGTTCA+TGG + chr1_2:43601911-43601930 None:intergenic 35.0%
AAACAATTACCAATCCTGCA+AGG - chr1_2:43601963-43601982 Msa0071550:intron 35.0%
!!! AATTTTTTTTGTGGTGGCTG+AGG + chr1_2:43602002-43602021 None:intergenic 35.0%
AAACAATTACCAATCCTGCA+AGG - chr1_2:43601963-43601982 Msa0071550:intron 35.0%
!!! TGGTTTTTTTTTTTGGTGGC+CGG + chr1_2:43602103-43602122 None:intergenic 35.0%
!! TCGGATTGGTAATTGTTCAT+TGG + chr1_2:43601910-43601929 None:intergenic 35.0%
TGTGCTAGTAACAAGTGAAA+TGG - chr1_2:43602211-43602230 Msa0071550:intron 35.0%
! GTGGTTTCTTTGGATTGTTT+TGG - chr1_2:43602481-43602500 Msa0071550:CDS 35.0%
ATATCACAACCAAATGCAGA+TGG - chr1_2:43602531-43602550 Msa0071550:CDS 35.0%
TTTGAACAAGTTGCAGGAAT+TGG - chr1_2:43602565-43602584 Msa0071550:CDS 35.0%
! TCTTATTCGCAGCTCTAATT+TGG + chr1_2:43602669-43602688 None:intergenic 35.0%
GAATGATCCATCATAATGCT+TGG - chr1_2:43602788-43602807 Msa0071550:CDS 35.0%
AGAACAGAAACAGATCTTTC+GGG + chr1_2:43602832-43602851 None:intergenic 35.0%
ACGGACGTTAAACTATTCAA+AGG + chr1_2:43602984-43603003 None:intergenic 35.0%
! GTTTGATTTCAGTTATCCCA+AGG - chr1_2:43603131-43603150 Msa0071550:intron 35.0%
ATGTGTTTGTCTGAATCCTT+GGG + chr1_2:43603150-43603169 None:intergenic 35.0%
CAAAACAAACAGGACTTACT+AGG - chr1_2:43603175-43603194 Msa0071550:intron 35.0%
AATGTACATGGAAGAGATGA+AGG - chr1_2:43603378-43603397 Msa0071550:intron 35.0%
!! TTTGCTTGATTTGTTGTCCT+CGG + chr1_2:43603422-43603441 None:intergenic 35.0%
TTCCAAACAAGACATTCCTA+TGG - chr1_2:43603525-43603544 Msa0071550:intron 35.0%
! AACCATAGGAATGTCTTGTT+TGG + chr1_2:43603530-43603549 None:intergenic 35.0%
TCGGTGATTGAAGAATTTCA+TGG + chr1_2:43603666-43603685 None:intergenic 35.0%
TCATTGGACTTCACATGATT+CGG + chr1_2:43603685-43603704 None:intergenic 35.0%
GATGATAGACAAAGTAGAGA+TGG - chr1_2:43603745-43603764 Msa0071550:intron 35.0%
CAATATCCAATGGAGGAAAT+CGG - chr1_2:43603814-43603833 Msa0071550:intron 35.0%
!!! CCTAGTTGAATGTTTTGGTT+TGG + chr1_2:43603955-43603974 None:intergenic 35.0%
CCAAACCAAAACATTCAACT+AGG - chr1_2:43603952-43603971 Msa0071550:intron 35.0%
CATTCAACTAGGAAGAAGAT+TGG - chr1_2:43603963-43603982 Msa0071550:intron 35.0%
AAAATCCGGTAACAATTGTG+CGG + chr1_2:43604067-43604086 None:intergenic 35.0%
! ACAATTGTTACCGGATTTTG+TGG - chr1_2:43604068-43604087 Msa0071550:intron 35.0%
GGGAAATAGATGATACAATC+GGG - chr1_2:43604109-43604128 Msa0071550:intron 35.0%
GGAAATAGATGATACAATCG+GGG - chr1_2:43604110-43604129 Msa0071550:intron 35.0%
GAAATAGATGATACAATCGG+GGG - chr1_2:43604111-43604130 Msa0071550:intron 35.0%
! AGAAGCGTACATTTACATGT+TGG + chr1_2:43604258-43604277 None:intergenic 35.0%
GAGAAACACAATCATTGCTA+TGG + chr1_2:43604302-43604321 None:intergenic 35.0%
! AACTCAAATGGTTCTATGCA+GGG + chr1_2:43604424-43604443 None:intergenic 35.0%
!!! AGTTTTGAAGATGGGATAGA+TGG - chr1_2:43604500-43604519 Msa0071550:five_prime_UTR 35.0%
!!! GTTTTGAAGATGGGATAGAT+GGG - chr1_2:43604501-43604520 Msa0071550:five_prime_UTR 35.0%
!!! AGAACTATTTTTTTGGGGGG+TGG + chr1_2:43599027-43599046 None:intergenic 40.0%
AACTTTCAGTTGCAAGTGGA+AGG - chr1_2:43599338-43599357 Msa0071550:three_prime_UTR 40.0%
TACACCAACCAGATTCACAA+AGG - chr1_2:43600163-43600182 Msa0071550:CDS 40.0%
!! CTTGTTTTTCTCAACTCAGC+CGG - chr1_2:43600586-43600605 Msa0071550:intron 40.0%
!! ATAAGTTCTGGTGTTGTTGG+TGG + chr1_2:43600639-43600658 None:intergenic 40.0%
!! GAGATAAGTTCTGGTGTTGT+TGG + chr1_2:43600642-43600661 None:intergenic 40.0%
TGTTGGAGAATCTTCAACTG+CGG - chr1_2:43601050-43601069 Msa0071550:intron 40.0%
!!! ACCCTTTTTTTGTGATGGTC+GGG + chr1_2:43601829-43601848 None:intergenic 40.0%
!!! GTTTTTTTTTTTGGTGGCCG+GGG + chr1_2:43602101-43602120 None:intergenic 40.0%
!!! GGTTTTTTTTTTTGGTGGCC+GGG + chr1_2:43602102-43602121 None:intergenic 40.0%
GTTGTGATCACTACTAGGAT+TGG + chr1_2:43602176-43602195 None:intergenic 40.0%
TGTGAGTTGTGATCACTACT+AGG + chr1_2:43602181-43602200 None:intergenic 40.0%
!!! GGATTGTTTTGGTTTGAAGG+TGG - chr1_2:43602492-43602511 Msa0071550:CDS 40.0%
AGGAAATCACCATCTGCATT+TGG + chr1_2:43602543-43602562 None:intergenic 40.0%
TAGAGCTGCGAATAAGAGTT+TGG - chr1_2:43602672-43602691 Msa0071550:CDS 40.0%
AGAGCTGCGAATAAGAGTTT+GGG - chr1_2:43602673-43602692 Msa0071550:CDS 40.0%
TTGGGAGAAGATGATAGCTT+TGG - chr1_2:43602691-43602710 Msa0071550:CDS 40.0%
! AGCTTTGGTGGCAAAATTGA+AGG - chr1_2:43602706-43602725 Msa0071550:CDS 40.0%
! GCTTTGGTGGCAAAATTGAA+GGG - chr1_2:43602707-43602726 Msa0071550:CDS 40.0%
CATGTGTTTGTCTGAATCCT+TGG + chr1_2:43603151-43603170 None:intergenic 40.0%
CACATGCTTGCAAAACAAAC+AGG - chr1_2:43603165-43603184 Msa0071550:intron 40.0%
ATGCTCGCACTCGTTATTAA+AGG + chr1_2:43603242-43603261 None:intergenic 40.0%
TAAATGCTCGAGTTCGTCTT+TGG - chr1_2:43603338-43603357 Msa0071550:intron 40.0%
! AGTTCGTCTTTGGAAACCAA+TGG - chr1_2:43603348-43603367 Msa0071550:intron 40.0%
ATGTACATTTCCTCCACCAT+TGG + chr1_2:43603367-43603386 None:intergenic 40.0%
! AATGGTGGAGGAAATGTACA+TGG - chr1_2:43603366-43603385 Msa0071550:intron 40.0%
ATGAAGGATCAAGAGCTGAA+TGG - chr1_2:43603394-43603413 Msa0071550:intron 40.0%
TTTCATCGAAGGATCGTCAT+CGG + chr1_2:43603449-43603468 None:intergenic 40.0%
ACAAGAAAGAGTTCCAACCT+CGG - chr1_2:43603480-43603499 Msa0071550:intron 40.0%
! ACTTTTGGATTCTGTTTCCG+AGG + chr1_2:43603500-43603519 None:intergenic 40.0%
! GGTGTTGAAACTGAAACCAT+AGG + chr1_2:43603544-43603563 None:intergenic 40.0%
ACACCATCAACTTCACCTAT+TGG - chr1_2:43603559-43603578 Msa0071550:intron 40.0%
ACACCAATAGGTGAAGTTGA+TGG + chr1_2:43603565-43603584 None:intergenic 40.0%
CAATTCAGGATTCAGCTTCA+CGG - chr1_2:43603597-43603616 Msa0071550:intron 40.0%
TGGTTTCGGTCAATATCCAA+TGG - chr1_2:43603804-43603823 Msa0071550:intron 40.0%
TTTCGGTCAATATCCAATGG+AGG - chr1_2:43603807-43603826 Msa0071550:intron 40.0%
AATCTTCCGATTTCCTCCAT+TGG + chr1_2:43603823-43603842 None:intergenic 40.0%
GGAAATCGGAAGATTTGATG+CGG - chr1_2:43603828-43603847 Msa0071550:five_prime_UTR 40.0%
AATGGTGTTTCACTCACTCT+TGG - chr1_2:43603883-43603902 Msa0071550:intron 40.0%
! CCTGATAATGTGTCACAATG+AGG + chr1_2:43603913-43603932 None:intergenic 40.0%
CCTCATTGTGACACATTATC+AGG - chr1_2:43603910-43603929 Msa0071550:intron 40.0%
TCAACATGCAGAATCCAAAG+AGG - chr1_2:43604037-43604056 Msa0071550:intron 40.0%
! GAACTCAAATGGTTCTATGC+AGG + chr1_2:43604425-43604444 None:intergenic 40.0%
!! ATAGTTCTAAGGGGGTTGCT+TGG - chr1_2:43599039-43599058 Msa0071550:three_prime_UTR 45.0%
AGGTACTTCTCCCCCAAAAA+AGG - chr1_2:43599151-43599170 Msa0071550:three_prime_UTR 45.0%
!! GAAATCCAAGGTGGTTCTGA+CGG - chr1_2:43600481-43600500 Msa0071550:intron 45.0%
! CGGCTGAGTTGAGAAAAACA+AGG + chr1_2:43600588-43600607 None:intergenic 45.0%
TCGGCAGAACAATCAGTACA+TGG - chr1_2:43600694-43600713 Msa0071550:CDS 45.0%
ATCAGTACATGGCCATCATG+AGG - chr1_2:43600705-43600724 Msa0071550:CDS 45.0%
GCAAAGCAGAAACCTCATGA+TGG + chr1_2:43600720-43600739 None:intergenic 45.0%
CATGAGGTTTCTGCTTTGCA+TGG - chr1_2:43600721-43600740 Msa0071550:CDS 45.0%
TGCTTCAAACGGCTGTGTTT+CGG - chr1_2:43600900-43600919 Msa0071550:CDS 45.0%
GAATCTTCAACTGCGGTTAG+TGG - chr1_2:43601057-43601076 Msa0071550:intron 45.0%
!! TTGGTGGTGGTGATGGAAAT+GGG - chr1_2:43601094-43601113 Msa0071550:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG - chr1_2:43601734-43601753 Msa0071550:intron 45.0%
ACCCCGACCATCACAAAAAA+AGG - chr1_2:43601824-43601843 Msa0071550:intron 45.0%
!!! CCCTTTTTTTGTGATGGTCG+GGG + chr1_2:43601828-43601847 None:intergenic 45.0%
CCCCGACCATCACAAAAAAA+GGG - chr1_2:43601825-43601844 Msa0071550:intron 45.0%
ATTACCAATCCTGCAAGGTC+CGG - chr1_2:43601968-43601987 Msa0071550:intron 45.0%
ATTACCAATCCTGCAAGGTC+CGG - chr1_2:43601968-43601987 Msa0071550:intron 45.0%
TCCTCGTTTGAACAAGTTGC+AGG - chr1_2:43602559-43602578 Msa0071550:CDS 45.0%
! TCCTGCAACTTGTTCAAACG+AGG + chr1_2:43602563-43602582 None:intergenic 45.0%
GGAGATTGTTTGTAGCGCTA+GGG + chr1_2:43602611-43602630 None:intergenic 45.0%
TGGAGATTGTTTGTAGCGCT+AGG + chr1_2:43602612-43602631 None:intergenic 45.0%
! ATTCGCAGCTCTAATTTGGC+CGG + chr1_2:43602665-43602684 None:intergenic 45.0%
!! GGAGAAGATGATAGCTTTGG+TGG - chr1_2:43602694-43602713 Msa0071550:CDS 45.0%
GTGGCAAAATTGAAGGGTCT+AGG - chr1_2:43602713-43602732 Msa0071550:CDS 45.0%
GAGGTCTCCAAGCATTATGA+TGG + chr1_2:43602798-43602817 None:intergenic 45.0%
AATGCTTGGAGACCTCAAAG+AGG - chr1_2:43602802-43602821 Msa0071550:CDS 45.0%
!! CTGTTTCTGTTCTTCGTGCT+TGG - chr1_2:43602839-43602858 Msa0071550:CDS 45.0%
GTATAGCGAGTACTTACGGA+TGG + chr1_2:43602882-43602901 None:intergenic 45.0%
AAAGAAGTAAGGAGGTCACC+TGG + chr1_2:43603203-43603222 None:intergenic 45.0%
! TCGTCTTTGGAAACCAATGG+TGG - chr1_2:43603351-43603370 Msa0071550:intron 45.0%
! TCTTTGGAAACCAATGGTGG+AGG - chr1_2:43603354-43603373 Msa0071550:intron 45.0%
!!! GGAGTTGGTGTTTTCATCGA+AGG + chr1_2:43603460-43603479 None:intergenic 45.0%
GGAACTCTTTCTTGTGGAGT+TGG + chr1_2:43603475-43603494 None:intergenic 45.0%
GAGGTTGGAACTCTTTCTTG+TGG + chr1_2:43603481-43603500 None:intergenic 45.0%
TTGGATTCTGTTTCCGAGGT+TGG + chr1_2:43603496-43603515 None:intergenic 45.0%
TTCAGCTTCACGGAACTTGA+TGG - chr1_2:43603607-43603626 Msa0071550:intron 45.0%
AATTGTGCGGCAAACCTCTT+TGG + chr1_2:43604054-43604073 None:intergenic 45.0%
GTTTGCCGCACAATTGTTAC+CGG - chr1_2:43604059-43604078 Msa0071550:intron 45.0%
GATGATACAATCGGGGGAAA+TGG - chr1_2:43604117-43604136 Msa0071550:intron 45.0%
ATGTACGCTTCTCTTACTGC+AGG - chr1_2:43604266-43604285 Msa0071550:intron 45.0%
TGTACGCTTCTCTTACTGCA+GGG - chr1_2:43604267-43604286 Msa0071550:intron 45.0%
TTCTCTTACTGCAGGGAATC+TGG - chr1_2:43604274-43604293 Msa0071550:intron 45.0%
!!! TATATTTTTTTTTTTTTTTG+TGG + chr1_2:43602390-43602409 None:intergenic 5.0%
AAAACAAGGTTACCGGCGTG+TGG + chr1_2:43600574-43600593 None:intergenic 50.0%
!! AGTTCTGGTGTTGTTGGTGG+TGG + chr1_2:43600636-43600655 None:intergenic 50.0%
ACTGATTGTTCTGCCGAGAG+CGG + chr1_2:43600691-43600710 None:intergenic 50.0%
ATTCACGCGCCGCTGAATTA+GGG + chr1_2:43600789-43600808 None:intergenic 50.0%
AGCTTACATGCTCAAGGGTC+AGG - chr1_2:43600838-43600857 Msa0071550:CDS 50.0%
TCGGGTTCGTCTGCTTCAAA+CGG - chr1_2:43600889-43600908 Msa0071550:CDS 50.0%
GCTTCAAACGGCTGTGTTTC+GGG - chr1_2:43600901-43600920 Msa0071550:CDS 50.0%
CTTCAAACGGCTGTGTTTCG+GGG - chr1_2:43600902-43600921 Msa0071550:CDS 50.0%
TCAACTGCGGTTAGTGGAGA+AGG - chr1_2:43601063-43601082 Msa0071550:intron 50.0%
! AGTGGAGAAGGTGGTTCTGT+TGG - chr1_2:43601075-43601094 Msa0071550:intron 50.0%
!! GTTGGTGGTGGTGATGGAAA+TGG - chr1_2:43601093-43601112 Msa0071550:intron 50.0%
TTACCAATCCTGCAAGGTCC+GGG - chr1_2:43601969-43601988 Msa0071550:intron 50.0%
TTACCAATCCTGCAAGGTCC+GGG - chr1_2:43601969-43601988 Msa0071550:intron 50.0%
CTTTCGGGCAATCCTCTTTG+AGG + chr1_2:43602817-43602836 None:intergenic 50.0%
AACAGGACTTACTAGGAGCC+AGG - chr1_2:43603182-43603201 Msa0071550:intron 50.0%
TCAAGAGCTGAATGGTTCCG+AGG - chr1_2:43603402-43603421 Msa0071550:intron 50.0%
AAGCAAGTCCAAAGCGAACG+AGG - chr1_2:43603638-43603657 Msa0071550:intron 50.0%
TCATGGTTCCTCGTTCGCTT+TGG + chr1_2:43603649-43603668 None:intergenic 50.0%
TGCGAGATGCAATCATCGCA+AGG + chr1_2:43604146-43604165 None:intergenic 50.0%
!! CTGGTGTTGTTGGTGGTGGA+GGG + chr1_2:43600632-43600651 None:intergenic 55.0%
!! TCTGGTGTTGTTGGTGGTGG+AGG + chr1_2:43600633-43600652 None:intergenic 55.0%
GTGGCGCGTGAGATAAGTTC+TGG + chr1_2:43600651-43600670 None:intergenic 55.0%
CTGATTGTTCTGCCGAGAGC+GGG + chr1_2:43600690-43600709 None:intergenic 55.0%
CACATGTTGTACCGCATGCG+CGG + chr1_2:43600754-43600773 None:intergenic 55.0%
GATTCACGCGCCGCTGAATT+AGG + chr1_2:43600790-43600809 None:intergenic 55.0%
TGAATCCACACGCGCTACTC+AGG - chr1_2:43600804-43600823 Msa0071550:CDS 55.0%
GAATCCACACGCGCTACTCA+GGG - chr1_2:43600805-43600824 Msa0071550:CDS 55.0%
AATCCACACGCGCTACTCAG+GGG - chr1_2:43600806-43600825 Msa0071550:CDS 55.0%
ACTGCGGTTAGTGGAGAAGG+TGG - chr1_2:43601066-43601085 Msa0071550:intron 55.0%
! GGAGAAGGTGGTTCTGTTGG+TGG - chr1_2:43601078-43601097 Msa0071550:intron 55.0%
! GAAGGTGGTTCTGTTGGTGG+TGG - chr1_2:43601081-43601100 Msa0071550:intron 55.0%
!! GGTTCTGTTGGTGGTGGTGA+TGG - chr1_2:43601087-43601106 Msa0071550:intron 55.0%
CTCACGAGGACAGTTGGTCA+TGG + chr1_2:43601718-43601737 None:intergenic 55.0%
GCTAAGCTCACGAGGACAGT+TGG + chr1_2:43601724-43601743 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG + chr1_2:43601732-43601751 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr1_2:43601729-43601748 Msa0071550:intron 55.0%
TACCAATCCTGCAAGGTCCG+GGG - chr1_2:43601970-43601989 Msa0071550:intron 55.0%
TACCAATCCTGCAAGGTCCG+GGG - chr1_2:43601970-43601989 Msa0071550:intron 55.0%
TTGTAGCGCTAGGGCAGTGT+AGG + chr1_2:43602602-43602621 None:intergenic 55.0%
GAAGGCCGTCAGAACCACCT+TGG + chr1_2:43600489-43600508 None:intergenic 60.0%
ACAAGGTTACCGGCGTGTGG+CGG + chr1_2:43600571-43600590 None:intergenic 60.0%
AACTCAGCCGGCAATCACCC+CGG - chr1_2:43600598-43600617 Msa0071550:intron 60.0%
AGTGTTGCCGGGGTGATTGC+CGG + chr1_2:43600608-43600627 None:intergenic 60.0%
!! TGGTGGAGGGAAGTGTTGCC+GGG + chr1_2:43600619-43600638 None:intergenic 60.0%
!! GTGGTGGAGGGAAGTGTTGC+CGG + chr1_2:43600620-43600639 None:intergenic 60.0%
CACGCGCCACCACAGTTTGT+CGG - chr1_2:43600661-43600680 Msa0071550:CDS 60.0%
GGGACTCCGACAAACTGTGG+TGG + chr1_2:43600670-43600689 None:intergenic 60.0%
AGCGGGACTCCGACAAACTG+TGG + chr1_2:43600673-43600692 None:intergenic 60.0%
GTTTGTCGGAGTCCCGCTCT+CGG - chr1_2:43600675-43600694 Msa0071550:CDS 60.0%
TGTTGTACCGCATGCGCGGT+GGG + chr1_2:43600750-43600769 None:intergenic 60.0%
ATGTTGTACCGCATGCGCGG+TGG + chr1_2:43600751-43600770 None:intergenic 60.0%
CGCGCATGCGGTACAACATG+TGG - chr1_2:43600752-43600771 Msa0071550:CDS 60.0%
ACGCGCCGCTGAATTAGGGT+CGG + chr1_2:43600785-43600804 None:intergenic 60.0%
ACATGCTCAAGGGTCAGGCG+AGG - chr1_2:43600843-43600862 Msa0071550:CDS 60.0%
ACGCGCGTGTTCCCATTGGT+GGG - chr1_2:43600866-43600885 Msa0071550:CDS 60.0%
! GCGTGTTCCCATTGGTGGGT+CGG - chr1_2:43600870-43600889 Msa0071550:CDS 60.0%
! CGTGTTCCCATTGGTGGGTC+GGG - chr1_2:43600871-43600890 Msa0071550:CDS 60.0%
GACGAACCCGACCCACCAAT+GGG + chr1_2:43600880-43600899 None:intergenic 60.0%
AGACGAACCCGACCCACCAA+TGG + chr1_2:43600881-43600900 None:intergenic 60.0%
GAACCCCTGCCACCACAATC+CGG - chr1_2:43601794-43601813 Msa0071550:intron 60.0%
AACCCCTGCCACCACAATCC+GGG - chr1_2:43601795-43601814 Msa0071550:intron 60.0%
AACCCCGGATTGTGGTGGCA+GGG + chr1_2:43601801-43601820 None:intergenic 60.0%
GTTCGAACCCCGGATTGTGG+TGG + chr1_2:43601806-43601825 None:intergenic 60.0%
GAACCCCTGCCACCACAATC+CGG - chr1_2:43601794-43601813 Msa0071550:intron 60.0%
AACCCCTGCCACCACAATCC+GGG - chr1_2:43601795-43601814 Msa0071550:intron 60.0%
AACCCCGGATTGTGGTGGCA+GGG + chr1_2:43601801-43601820 None:intergenic 60.0%
GTTCGAACCCCGGATTGTGG+TGG + chr1_2:43601806-43601825 None:intergenic 60.0%
AACCCCGGACCTTGCAGGAT+TGG + chr1_2:43601975-43601994 None:intergenic 60.0%
AACCCCGGACCTTGCAGGAT+TGG + chr1_2:43601975-43601994 None:intergenic 60.0%
!! GGTGGAGGGAAGTGTTGCCG+GGG + chr1_2:43600618-43600637 None:intergenic 65.0%
ATGGCTTCCCACCGCGCATG+CGG - chr1_2:43600740-43600759 Msa0071550:CDS 65.0%
CCGCTGAATTAGGGTCGGCG+GGG + chr1_2:43600780-43600799 None:intergenic 65.0%
CCCCGCCGACCCTAATTCAG+CGG - chr1_2:43600777-43600796 Msa0071550:CDS 65.0%
GCCGCTGAATTAGGGTCGGC+GGG + chr1_2:43600781-43600800 None:intergenic 65.0%
CGCCGCTGAATTAGGGTCGG+CGG + chr1_2:43600782-43600801 None:intergenic 65.0%
GAGGACGCGCGTGTTCCCAT+TGG - chr1_2:43600862-43600881 Msa0071550:CDS 65.0%
GACGCGCGTGTTCCCATTGG+TGG - chr1_2:43600865-43600884 Msa0071550:CDS 65.0%
ACCCCTGCCACCACAATCCG+GGG - chr1_2:43601796-43601815 Msa0071550:intron 65.0%
ACCCCGGATTGTGGTGGCAG+GGG + chr1_2:43601800-43601819 None:intergenic 65.0%
GAACCCCGGATTGTGGTGGC+AGG + chr1_2:43601802-43601821 None:intergenic 65.0%
GGGGTTCGAACCCCGGATTG+TGG + chr1_2:43601809-43601828 None:intergenic 65.0%
GATGGTCGGGGTTCGAACCC+CGG + chr1_2:43601816-43601835 None:intergenic 65.0%
ACCCCTGCCACCACAATCCG+GGG - chr1_2:43601796-43601815 Msa0071550:intron 65.0%
ACCCCGGATTGTGGTGGCAG+GGG + chr1_2:43601800-43601819 None:intergenic 65.0%
GAACCCCGGATTGTGGTGGC+AGG + chr1_2:43601802-43601821 None:intergenic 65.0%
GGGGTTCGAACCCCGGATTG+TGG + chr1_2:43601809-43601828 None:intergenic 65.0%
GATGGTCGGGGTTCGAACCC+CGG + chr1_2:43601816-43601835 None:intergenic 65.0%
GTTCGAACCCCGGACCTTGC+AGG + chr1_2:43601980-43601999 None:intergenic 65.0%
GGTGGCTGAGGTTCGAACCC+CGG + chr1_2:43601990-43602009 None:intergenic 65.0%
GTTCGAACCCCGGACCTTGC+AGG + chr1_2:43601980-43601999 None:intergenic 65.0%
AAGGTCCGGGGTTCGAACCC+CGG - chr1_2:43602081-43602100 Msa0071550:intron 65.0%
AGGTTACCGGCGTGTGGCGG+CGG + chr1_2:43600568-43600587 None:intergenic 70.0%
CAGCCCCTGAGTAGCGCGTG+TGG + chr1_2:43600812-43600831 None:intergenic 70.0%
GGTGGCAGGGGTTCGAACCC+CGG + chr1_2:43601788-43601807 None:intergenic 70.0%
GGTGGCCGGGGTTCGAACCC+CGG + chr1_2:43602089-43602108 None:intergenic 75.0%
! TGGCGGCGGTTGCGGCGCGT+CGG + chr1_2:43600554-43600573 None:intergenic 80.0%
! CCGGCGTGTGGCGGCGGTTG+CGG + chr1_2:43600562-43600581 None:intergenic 80.0%
! CCGCAACCGCCGCCACACGC+CGG - chr1_2:43600559-43600578 Msa0071550:intron 80.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 43598862 43604659 43598862 ID=Msa0071550;Name=Msa0071550
chr1_2 mRNA 43598862 43604659 43598862 ID=Msa0071550-mRNA-1;Parent=Msa0071550;Name=Msa0071550-mRNA-1;_AED=0.09;_eAED=0.09;_QI=428|1|1|1|0.42|0.25|8|544|650
chr1_2 exon 43598862 43599278 43598862 ID=Msa0071550-mRNA-1:exon:13181;Parent=Msa0071550-mRNA-1
chr1_2 exon 43599299 43600199 43599299 ID=Msa0071550-mRNA-1:exon:13180;Parent=Msa0071550-mRNA-1
chr1_2 exon 43600318 43600378 43600318 ID=Msa0071550-mRNA-1:exon:13179;Parent=Msa0071550-mRNA-1
chr1_2 exon 43600637 43601010 43600637 ID=Msa0071550-mRNA-1:exon:13178;Parent=Msa0071550-mRNA-1
chr1_2 exon 43602324 43603078 43602324 ID=Msa0071550-mRNA-1:exon:13177;Parent=Msa0071550-mRNA-1
chr1_2 exon 43603827 43603895 43603827 ID=Msa0071550-mRNA-1:exon:13176;Parent=Msa0071550-mRNA-1
chr1_2 exon 43604118 43604174 43604118 ID=Msa0071550-mRNA-1:exon:13175;Parent=Msa0071550-mRNA-1
chr1_2 exon 43604369 43604659 43604369 ID=Msa0071550-mRNA-1:exon:13174;Parent=Msa0071550-mRNA-1
chr1_2 five_prime_UTR 43604369 43604659 43604369 ID=Msa0071550-mRNA-1:five_prime_utr;Parent=Msa0071550-mRNA-1
chr1_2 five_prime_UTR 43604118 43604174 43604118 ID=Msa0071550-mRNA-1:five_prime_utr;Parent=Msa0071550-mRNA-1
chr1_2 five_prime_UTR 43603827 43603895 43603827 ID=Msa0071550-mRNA-1:five_prime_utr;Parent=Msa0071550-mRNA-1
chr1_2 five_prime_UTR 43603068 43603078 43603068 ID=Msa0071550-mRNA-1:five_prime_utr;Parent=Msa0071550-mRNA-1
chr1_2 CDS 43602324 43603067 43602324 ID=Msa0071550-mRNA-1:cds;Parent=Msa0071550-mRNA-1
chr1_2 CDS 43600637 43601010 43600637 ID=Msa0071550-mRNA-1:cds;Parent=Msa0071550-mRNA-1
chr1_2 CDS 43600318 43600378 43600318 ID=Msa0071550-mRNA-1:cds;Parent=Msa0071550-mRNA-1
chr1_2 CDS 43599426 43600199 43599426 ID=Msa0071550-mRNA-1:cds;Parent=Msa0071550-mRNA-1
chr1_2 three_prime_UTR 43599299 43599425 43599299 ID=Msa0071550-mRNA-1:three_prime_utr;Parent=Msa0071550-mRNA-1
chr1_2 three_prime_UTR 43598862 43599278 43598862 ID=Msa0071550-mRNA-1:three_prime_utr;Parent=Msa0071550-mRNA-1
Gene Sequence

>Msa0071550

ATGGCAACATATTTTCATAATAATTCAGAAATCCAAGGTGGTTCTGACGGCCTTCAAACACTCATTTTCATGAATCCATCAGGTTACATCAATTACTCCGACGCGCCGCAACCGCCGCCACACGCCGGTAACCTTGTTTTTCTCAACTCAGCCGGCAATCACCCCGGCAACACTTCCCTCCACCACCAACAACACCAGAACTTATCTCACGCGCCACCACAGTTTGTCGGAGTCCCGCTCTCGGCAGAACAATCAGTACATGGCCATCATGAGGTTTCTGCTTTGCATGGCTTCCCACCGCGCATGCGGTACAACATGTGGAACCCCGCCGACCCTAATTCAGCGGCGCGTGAATCCACACGCGCTACTCAGGGGCTGTCATTAAGCTTACATGCTCAAGGGTCAGGCGAGGACGCGCGTGTTCCCATTGGTGGGTCGGGTTCGTCTGCTTCAAACGGCTGTGTTTCGGGGATACAGAGTGTGTTATTGAGTTCTAAGTATTTGAAAGCTACACAAGAATTACTTGATGAAGTTGTTAATGTTAATGGTGGGATTAAGGTTGAAAATGTTAAGAAGAGTTTTGAGAAAAATAAGGTTGTTGGAGAATCTTCAACTGCGGTTAGTGGAGAAGGTGGTTCTGTTGGTGGTGGTGATGGAAATGGGAAACGTAGCACTGAGTTATCAACTACTGAGAGACAAGAAATTCAGATGAAGAAAGCTAAGTTAATTAACATGCTTGATGAGGTGGAACAAAGATACAGACAATATCACAACCAAATGCAGATGGTGATTTCCTCGTTTGAACAAGTTGCAGGAATTGGTTCAGCAAGAACCTACACTGCCCTAGCGCTACAAACAATCTCCAAGCAATTTCGATGTTTAAAAGATGCAATTACCGGCCAAATTAGAGCTGCGAATAAGAGTTTGGGAGAAGATGATAGCTTTGGTGGCAAAATTGAAGGGTCTAGGCTCAAATATGTTGATCATCATTTAAGACAACAAAGAGCTATTCAACAATTGGGAATGATCCATCATAATGCTTGGAGACCTCAAAGAGGATTGCCCGAAAGATCTGTTTCTGTTCTTCGTGCTTGGCTTTTCGAACATTTTCTCCATCCTTATCCCAAGGATTCAGACAAACACATGCTTGCAAAACAAACAGGACTTACTAGGAGCCAGGTTTCAAATTGGTTCATAAATGCTCGAGTTCGTCTTTGGAAACCAATGGTGGAGGAAATGTACATGGAAGAGATGAAGGATCAAGAGCTGAATGGTTCCGAGGACAACAAATCAAGCAAAAATACCGATGACGATCCTTCGATGAAAACACCAACTCCACAAGAAAGAGTTCCAACCTCGGAAACAGAATCCAAAAGTTTCAATTCCAAACAAGACATTCCTATGGTTTCAGTTTCAACACCATCAACTTCACCTATTGGTGTGAATGTTAGAAACAATTCAGGATTCAGCTTCACGGAACTTGATGGAATAACACAAGCAAGTCCAAAGCGAACGAGGAACCATGAAATTCTTCAATCACCGAATCATGTGAAGTCCAATGAAACAACAACTAATAATGAACAAATTTCAATGAAATTTGGTGATGATAGACAAAGTAGAGATGGTTATTGTTTCATGGGAAACCAAACTAATTTCATTGCTGGTTTCGGTCAATATCCAATGGAGGAAATCGGAAGATTTGATGCGGAACAATTTGCACCAAGGTTTTCAGGTAATAATAATGGTGTTTCACTCACTCTTGGTTTGCCTCATTGTGACACATTATCAGGAACACATCAAAGTTTTATGCCAAACCAAAACATTCAACTAGGAAGAAGATTGGACATTAGCGAAACAAATGAGTTTGGTGACTCTTCAGCTGCATTTGAGAGTATCAACATGCAGAATCCAAAGAGGTTTGCCGCACAATTGTTACCGGATTTTGTGGCATAA
Protein sequence

>Msa0071550

MATYFHNNSEIQGGSDGLQTLIFMNPSGYINYSDAPQPPPHAGNLVFLNSAGNHPGNTSLHHQQHQNLSHAPPQFVGVPLSAEQSVHGHHEVSALHGFPPRMRYNMWNPADPNSAARESTRATQGLSLSLHAQGSGEDARVPIGGSGSSASNGCVSGIQSVLLSSKYLKATQELLDEVVNVNGGIKVENVKKSFEKNKVVGESSTAVSGEGGSVGGGDGNGKRSTELSTTERQEIQMKKAKLINMLDEVEQRYRQYHNQMQMVISSFEQVAGIGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEDDSFGGKIEGSRLKYVDHHLRQQRAIQQLGMIHHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEMKDQELNGSEDNKSSKNTDDDPSMKTPTPQERVPTSETESKSFNSKQDIPMVSVSTPSTSPIGVNVRNNSGFSFTELDGITQASPKRTRNHEILQSPNHVKSNETTTNNEQISMKFGDDRQSRDGYCFMGNQTNFIAGFGQYPMEEIGRFDAEQFAPRFSGNNNGVSLTLGLPHCDTLSGTHQSFMPNQNIQLGRRLDISETNEFGDSSAAFESINMQNPKRFAAQLLPDFVA*