Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418970 | sp|Q9FHS6|FK119_ARATH | 50.802 | 374 | 163 | 5 | 16 | 381 | 43 | 403 | 3.92e-109 | 328 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418970 | A0A396JG55 | 96.084 | 383 | 12 | 2 | 1 | 381 | 13 | 394 | 0.0 | 748 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0052360 | Msa1418970 | 0.945729 | 1.767287e-104 | -8.615850e-47 |
| Msa0082420 | Msa1418970 | 0.809404 | 1.923965e-50 | -8.615850e-47 |
| Msa0090510 | Msa1418970 | 0.816501 | 5.352432e-52 | -8.615850e-47 |
| Msa0097370 | Msa1418970 | 0.958826 | 8.977346e-117 | -8.615850e-47 |
| Msa1364080 | Msa1418970 | 0.805974 | 1.030051e-49 | -8.615850e-47 |
| Msa1407760 | Msa1418970 | 0.842284 | 2.839827e-58 | -8.615850e-47 |
| Msa1418970 | Msa1437730 | 0.820389 | 7.038789e-53 | -8.615850e-47 |
| Msa1418970 | Msa1450440 | 0.814129 | 1.802531e-51 | -8.615850e-47 |
| Msa0641130 | Msa1418970 | 0.820065 | 8.352447e-53 | -8.615850e-47 |
| Msa0703810 | Msa1418970 | 0.817137 | 3.853357e-52 | -8.615850e-47 |
| Msa0744640 | Msa1418970 | 0.800477 | 1.415343e-48 | -8.615850e-47 |
| Msa0841730 | Msa1418970 | 0.800458 | 1.428057e-48 | -8.615850e-47 |
| Msa0136630 | Msa1418970 | 0.806240 | 9.057609e-50 | -8.615850e-47 |
| Msa0152560 | Msa1418970 | 0.806057 | 9.895757e-50 | -8.615850e-47 |
| Msa0183910 | Msa1418970 | 0.801628 | 8.230559e-49 | -8.615850e-47 |
| Msa0187310 | Msa1418970 | 0.815323 | 9.803674e-52 | -8.615850e-47 |
| Msa0224130 | Msa1418970 | 0.812456 | 4.200287e-51 | -8.615850e-47 |
| Msa1256330 | Msa1418970 | 0.809146 | 2.185582e-50 | -8.615850e-47 |
| Msa1260060 | Msa1418970 | 0.804520 | 2.077197e-49 | -8.615850e-47 |
| Msa0374890 | Msa1418970 | 0.808472 | 3.046297e-50 | -8.615850e-47 |
| Msa0470880 | Msa1418970 | 0.802157 | 6.409938e-49 | -8.615850e-47 |
| Msa0985180 | Msa1418970 | 0.806560 | 7.752848e-50 | -8.615850e-47 |
| Msa1022030 | Msa1418970 | 0.815842 | 7.512460e-52 | -8.615850e-47 |
| Msa1044510 | Msa1418970 | 0.811432 | 7.021546e-51 | -8.615850e-47 |
| Msa1062040 | Msa1418970 | 0.823269 | 1.517012e-53 | -8.615850e-47 |
| Msa1063360 | Msa1418970 | 0.828996 | 6.588422e-55 | -8.615850e-47 |
| Msa1070540 | Msa1418970 | 0.805878 | 1.079127e-49 | -8.615850e-47 |
| Msa1101240 | Msa1418970 | 0.803081 | 4.131997e-49 | -8.615850e-47 |
| Msa0265270 | Msa1418970 | 0.810733 | 9.951792e-51 | -8.615850e-47 |
| Msa1107200 | Msa1418970 | 0.810863 | 9.326478e-51 | -8.615850e-47 |
| Msa1208990 | Msa1418970 | 0.804542 | 2.055042e-49 | -8.615850e-47 |
| Msa0545020 | Msa1418970 | 0.823974 | 1.037359e-53 | -8.615850e-47 |
| Msa0545050 | Msa1418970 | 0.829127 | 6.126067e-55 | -8.615850e-47 |
| Msa0567370 | Msa1418970 | 0.817198 | 3.734619e-52 | -8.615850e-47 |
| Msa0592330 | Msa1418970 | 0.827284 | 1.702858e-54 | -8.615850e-47 |
| Msa0600590 | Msa1418970 | 0.833790 | 4.354952e-56 | -8.615850e-47 |
| Msa0965290 | Msa1418970 | 0.801967 | 7.012347e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418970 | MtrunA17_Chr1g0152611 | 96.084 | 383 | 12 | 2 | 1 | 381 | 13 | 394 | 0.0 | 748 |
| Msa1418970 | MtrunA17_Chr7g0220421 | 26.536 | 358 | 230 | 11 | 5 | 354 | 82 | 414 | 3.07e-21 | 94.7 |
| Msa1418970 | MtrunA17_Chr3g0122401 | 22.881 | 354 | 237 | 12 | 16 | 357 | 111 | 440 | 3.16e-18 | 85.9 |
| Msa1418970 | MtrunA17_Chr4g0052791 | 26.119 | 402 | 235 | 15 | 16 | 381 | 55 | 430 | 4.34e-17 | 82.4 |
| Msa1418970 | MtrunA17_Chr8g0347881 | 24.093 | 386 | 232 | 18 | 24 | 377 | 44 | 400 | 7.50e-13 | 69.3 |
| Msa1418970 | MtrunA17_Chr1g0161871 | 24.324 | 296 | 180 | 11 | 16 | 293 | 24 | 293 | 9.66e-13 | 68.9 |
| Msa1418970 | MtrunA17_Chr8g0347851 | 24.282 | 383 | 230 | 20 | 24 | 377 | 44 | 395 | 8.56e-12 | 66.2 |
| Msa1418970 | MtrunA17_Chr4g0003651 | 23.858 | 394 | 208 | 20 | 20 | 363 | 1 | 352 | 5.62e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418970 | AT5G43190.1 | 50.802 | 374 | 163 | 5 | 16 | 381 | 43 | 403 | 3.98e-110 | 328 |
| Msa1418970 | AT5G15710.1 | 26.062 | 353 | 236 | 10 | 11 | 357 | 94 | 427 | 6.90e-25 | 105 |
| Msa1418970 | AT5G15710.2 | 26.062 | 353 | 236 | 10 | 11 | 357 | 94 | 427 | 6.90e-25 | 105 |
| Msa1418970 | AT1G27340.1 | 24.523 | 367 | 234 | 13 | 7 | 357 | 103 | 442 | 4.82e-19 | 89.0 |
Find 59 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTAATTTGCTCCAAATATT+TGG | 0.127540 | tig0024656:-56407 | None:intergenic |
| CAACAAGGCGTTTACTTTAA+AGG | 0.179983 | tig0024656:+56989 | Msa1418970:CDS |
| TTCCAATGGATCCAAATATT+TGG | 0.191017 | tig0024656:+56396 | Msa1418970:CDS |
| TTCACTACTCTTGTTTCTTC+TGG | 0.199496 | tig0024656:+56707 | Msa1418970:CDS |
| TGGAAGAAATTCAATGGTTT+TGG | 0.238628 | tig0024656:+56941 | Msa1418970:CDS |
| TCAAAATACACAACAGAAAA+TGG | 0.244990 | tig0024656:-57037 | None:intergenic |
| TTGATTTGCAGAGTGGAAAA+TGG | 0.245802 | tig0024656:+57056 | Msa1418970:CDS |
| TCAATGTGAATATTGAAATT+TGG | 0.282093 | tig0024656:-56815 | None:intergenic |
| AGGATGTATTCAAGAATTTC+AGG | 0.295437 | tig0024656:-56431 | None:intergenic |
| ATGAATCAAGCTCAAAGATT+TGG | 0.301695 | tig0024656:+56921 | Msa1418970:CDS |
| AGTAAGAGAAAAGAAGAAAA+AGG | 0.302452 | tig0024656:-56578 | None:intergenic |
| AACAAGGCGTTTACTTTAAA+GGG | 0.310157 | tig0024656:+56990 | Msa1418970:CDS |
| AAATGAGTGAAGAAGGAAAT+TGG | 0.316705 | tig0024656:+57224 | Msa1418970:CDS |
| CCTCTCTATGATTGCAACCT+TGG | 0.347354 | tig0024656:+56629 | Msa1418970:CDS |
| TGTATTATTTGGTTTCTAGA+AGG | 0.364474 | tig0024656:+57380 | Msa1418970:CDS |
| CTAACAAAAGTGAGTTGTTC+AGG | 0.365596 | tig0024656:-57100 | None:intergenic |
| TGAGGATTATCACTTAGAAT+TGG | 0.376949 | tig0024656:-56965 | None:intergenic |
| CTCCAAATATTTGGATCCAT+TGG | 0.381259 | tig0024656:-56398 | None:intergenic |
| TTCAAGGAGTATTAAATTGT+GGG | 0.389256 | tig0024656:+57201 | Msa1418970:CDS |
| TGATTTGCAGAGTGGAAAAT+GGG | 0.399064 | tig0024656:+57057 | Msa1418970:CDS |
| ATTGGTGGGGTTGGGAGCAA+TGG | 0.400554 | tig0024656:+57175 | Msa1418970:CDS |
| GGACTTGGCATTGGCTTCCT+AGG | 0.409307 | tig0024656:+57401 | Msa1418970:CDS |
| GGAAAGTGACGGTGGAATTG+AGG | 0.421377 | tig0024656:-56608 | None:intergenic |
| TGGATATTGAATCTTTCTCT+TGG | 0.423695 | tig0024656:-56795 | None:intergenic |
| ACATTTGTTACAACACCAAA+AGG | 0.424367 | tig0024656:+56845 | Msa1418970:CDS |
| ACCAAATAATACAAAATCTC+TGG | 0.431057 | tig0024656:-57370 | None:intergenic |
| TTTCAAGGAGTATTAAATTG+TGG | 0.434624 | tig0024656:+57200 | Msa1418970:CDS |
| TACACAACAGAAAATGGTTC+TGG | 0.435903 | tig0024656:-57031 | None:intergenic |
| CAAACTTCAGCATACAACTT+AGG | 0.436734 | tig0024656:-57478 | None:intergenic |
| GAAAGTGACGGTGGAATTGA+GGG | 0.445405 | tig0024656:-56607 | None:intergenic |
| AAGATTTGGAAGAAATTCAA+TGG | 0.448212 | tig0024656:+56935 | Msa1418970:CDS |
| TGTTCAGGTAAATTAGCAAT+TGG | 0.452549 | tig0024656:-57085 | None:intergenic |
| TTTGTATTTGTTGTTATACT+TGG | 0.460439 | tig0024656:+57347 | Msa1418970:CDS |
| TTTCTAGAAGGACTTGGCAT+TGG | 0.477879 | tig0024656:+57392 | Msa1418970:CDS |
| GAAACAAGAGTAGTGAAAGA+AGG | 0.482207 | tig0024656:-56701 | None:intergenic |
| ACTACTCTTGTTTCTTCTGG+TGG | 0.490392 | tig0024656:+56710 | Msa1418970:CDS |
| ATTTGGTTTCTAGAAGGACT+TGG | 0.493422 | tig0024656:+57386 | Msa1418970:CDS |
| TTGTGGGAAATGAGTGAAGA+AGG | 0.500793 | tig0024656:+57217 | Msa1418970:CDS |
| CTACATTTGAAAGGCAAAGA+AGG | 0.506052 | tig0024656:-57427 | None:intergenic |
| TTGCCTTTCAAATGTAGCTG+TGG | 0.517342 | tig0024656:+57433 | Msa1418970:CDS |
| TTGGGAGCAATGGAATTTCA+AGG | 0.520457 | tig0024656:+57185 | Msa1418970:CDS |
| AAGTAAACGCCTTGTTGATG+AGG | 0.522009 | tig0024656:-56983 | None:intergenic |
| AATGAAGGAGAGAAAATCAA+TGG | 0.526398 | tig0024656:-56512 | None:intergenic |
| CAATCTTAAATCACTTCCAA+TGG | 0.529406 | tig0024656:+56382 | Msa1418970:CDS |
| AAACCACAGCTACATTTGAA+AGG | 0.547126 | tig0024656:-57436 | None:intergenic |
| TCTCTAAGATCAACTTGCAA+AGG | 0.552005 | tig0024656:+56482 | Msa1418970:CDS |
| AAATATTACGCCATGTTCCA+AGG | 0.553994 | tig0024656:-56646 | None:intergenic |
| CATTTGTTACAACACCAAAA+GGG | 0.556102 | tig0024656:+56846 | Msa1418970:CDS |
| AATGATGATGCTGTTGAAGA+AGG | 0.574036 | tig0024656:+57136 | Msa1418970:CDS |
| ATGATTGCAACCTTGGAACA+TGG | 0.574086 | tig0024656:+56636 | Msa1418970:CDS |
| GAAGAAGATGAAGATGATGA+AGG | 0.579340 | tig0024656:-56551 | None:intergenic |
| AATTTCCTACACATAAGATC+AGG | 0.581580 | tig0024656:-57265 | None:intergenic |
| GTTTGCCTGATCTTATGTGT+AGG | 0.598013 | tig0024656:+57260 | Msa1418970:CDS |
| CCAAGGTTGCAATCATAGAG+AGG | 0.624704 | tig0024656:-56629 | None:intergenic |
| AAAGGCAAAGAAGGACACCT+AGG | 0.645464 | tig0024656:-57418 | None:intergenic |
| CATAGAGAGGAAAGTGACGG+TGG | 0.658591 | tig0024656:-56616 | None:intergenic |
| AGTGATAATCCTCATCAACA+AGG | 0.667224 | tig0024656:+56974 | Msa1418970:CDS |
| ATGTATTCAAGAATTTCAGG+TGG | 0.686194 | tig0024656:-56428 | None:intergenic |
| AATCATAGAGAGGAAAGTGA+CGG | 0.700567 | tig0024656:-56619 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAATGTGAATATTGAAATT+TGG | - | tig0024656:56818-56837 | None:intergenic | 20.0% |
| !!! | TTTGTATTTGTTGTTATACT+TGG | + | tig0024656:57347-57366 | Msa1418970:CDS | 20.0% |
| !! | TCAATGTGAATATTGAAATT+TGG | - | tig0024656:56818-56837 | None:intergenic | 20.0% |
| !!! | TTTGTATTTGTTGTTATACT+TGG | + | tig0024656:57347-57366 | Msa1418970:CDS | 20.0% |
| !!! | GAATGTTTTGAAATGAATGA+AGG | - | tig0024656:56530-56549 | None:intergenic | 25.0% |
| ! | AGTAAGAGAAAAGAAGAAAA+AGG | - | tig0024656:56581-56600 | None:intergenic | 25.0% |
| !! | ACAAAAATGATATACCCTTT+TGG | - | tig0024656:56863-56882 | None:intergenic | 25.0% |
| ! | AAGATTTGGAAGAAATTCAA+TGG | + | tig0024656:56935-56954 | Msa1418970:CDS | 25.0% |
| ! | TCAAAATACACAACAGAAAA+TGG | - | tig0024656:57040-57059 | None:intergenic | 25.0% |
| !!! | GGTAAAAAACTGTTTTTGAT+TGG | + | tig0024656:57157-57176 | Msa1418970:CDS | 25.0% |
| !!! | AAAAAACTGTTTTTGATTGG+TGG | + | tig0024656:57160-57179 | Msa1418970:CDS | 25.0% |
| !!! | AAAAACTGTTTTTGATTGGT+GGG | + | tig0024656:57161-57180 | Msa1418970:CDS | 25.0% |
| !!! | TTTCAAGGAGTATTAAATTG+TGG | + | tig0024656:57200-57219 | Msa1418970:CDS | 25.0% |
| !!! | TTCAAGGAGTATTAAATTGT+GGG | + | tig0024656:57201-57220 | Msa1418970:CDS | 25.0% |
| !! | ATGAGCATGTTTATTGTTTT+TGG | + | tig0024656:57311-57330 | Msa1418970:CDS | 25.0% |
| ! | ACCAAATAATACAAAATCTC+TGG | - | tig0024656:57373-57392 | None:intergenic | 25.0% |
| !! | TGTATTATTTGGTTTCTAGA+AGG | + | tig0024656:57380-57399 | Msa1418970:CDS | 25.0% |
| !!! | GAATGTTTTGAAATGAATGA+AGG | - | tig0024656:56530-56549 | None:intergenic | 25.0% |
| ! | AGTAAGAGAAAAGAAGAAAA+AGG | - | tig0024656:56581-56600 | None:intergenic | 25.0% |
| !! | ACAAAAATGATATACCCTTT+TGG | - | tig0024656:56863-56882 | None:intergenic | 25.0% |
| ! | AAGATTTGGAAGAAATTCAA+TGG | + | tig0024656:56935-56954 | Msa1418970:CDS | 25.0% |
| ! | TCAAAATACACAACAGAAAA+TGG | - | tig0024656:57040-57059 | None:intergenic | 25.0% |
| !!! | GGTAAAAAACTGTTTTTGAT+TGG | + | tig0024656:57157-57176 | Msa1418970:CDS | 25.0% |
| !!! | AAAAAACTGTTTTTGATTGG+TGG | + | tig0024656:57160-57179 | Msa1418970:CDS | 25.0% |
| !!! | AAAAACTGTTTTTGATTGGT+GGG | + | tig0024656:57161-57180 | Msa1418970:CDS | 25.0% |
| !!! | TTTCAAGGAGTATTAAATTG+TGG | + | tig0024656:57200-57219 | Msa1418970:CDS | 25.0% |
| !!! | TTCAAGGAGTATTAAATTGT+GGG | + | tig0024656:57201-57220 | Msa1418970:CDS | 25.0% |
| !! | ATGAGCATGTTTATTGTTTT+TGG | + | tig0024656:57311-57330 | Msa1418970:CDS | 25.0% |
| ! | ACCAAATAATACAAAATCTC+TGG | - | tig0024656:57373-57392 | None:intergenic | 25.0% |
| !! | TGTATTATTTGGTTTCTAGA+AGG | + | tig0024656:57380-57399 | Msa1418970:CDS | 25.0% |
| CAATCTTAAATCACTTCCAA+TGG | + | tig0024656:56382-56401 | Msa1418970:CDS | 30.0% | |
| TTCCAATGGATCCAAATATT+TGG | + | tig0024656:56396-56415 | Msa1418970:CDS | 30.0% | |
| !! | GGTAATTTGCTCCAAATATT+TGG | - | tig0024656:56410-56429 | None:intergenic | 30.0% |
| ATGTATTCAAGAATTTCAGG+TGG | - | tig0024656:56431-56450 | None:intergenic | 30.0% | |
| AGGATGTATTCAAGAATTTC+AGG | - | tig0024656:56434-56453 | None:intergenic | 30.0% | |
| !! | TTTTGAGAGGAAGAAAAGAA+AGG | - | tig0024656:56454-56473 | None:intergenic | 30.0% |
| AATGAAGGAGAGAAAATCAA+TGG | - | tig0024656:56515-56534 | None:intergenic | 30.0% | |
| ! | TTCTCTTGGATTTTGCTAAA+AGG | - | tig0024656:56784-56803 | None:intergenic | 30.0% |
| TGGATATTGAATCTTTCTCT+TGG | - | tig0024656:56798-56817 | None:intergenic | 30.0% | |
| ! | ACATTTGTTACAACACCAAA+AGG | + | tig0024656:56845-56864 | Msa1418970:CDS | 30.0% |
| ! | CATTTGTTACAACACCAAAA+GGG | + | tig0024656:56846-56865 | Msa1418970:CDS | 30.0% |
| ATGAATCAAGCTCAAAGATT+TGG | + | tig0024656:56921-56940 | Msa1418970:CDS | 30.0% | |
| ! | TGGAAGAAATTCAATGGTTT+TGG | + | tig0024656:56941-56960 | Msa1418970:CDS | 30.0% |
| TGAGGATTATCACTTAGAAT+TGG | - | tig0024656:56968-56987 | None:intergenic | 30.0% | |
| ! | AACAAGGCGTTTACTTTAAA+GGG | + | tig0024656:56990-57009 | Msa1418970:CDS | 30.0% |
| TGTTCAGGTAAATTAGCAAT+TGG | - | tig0024656:57088-57107 | None:intergenic | 30.0% | |
| !! | ACAACTCACTTTTGTTAGAT+TGG | + | tig0024656:57105-57124 | Msa1418970:CDS | 30.0% |
| !!! | AAAACTGTTTTTGATTGGTG+GGG | + | tig0024656:57162-57181 | Msa1418970:CDS | 30.0% |
| AAATGAGTGAAGAAGGAAAT+TGG | + | tig0024656:57224-57243 | Msa1418970:CDS | 30.0% | |
| AATTTCCTACACATAAGATC+AGG | - | tig0024656:57268-57287 | None:intergenic | 30.0% | |
| !!! | GTTTATTGTTTTTGGCATGA+AGG | + | tig0024656:57319-57338 | Msa1418970:CDS | 30.0% |
| ! | GCCAGAGATTTTGTATTATT+TGG | + | tig0024656:57369-57388 | Msa1418970:CDS | 30.0% |
| CAATCTTAAATCACTTCCAA+TGG | + | tig0024656:56382-56401 | Msa1418970:CDS | 30.0% | |
| TTCCAATGGATCCAAATATT+TGG | + | tig0024656:56396-56415 | Msa1418970:CDS | 30.0% | |
| !! | GGTAATTTGCTCCAAATATT+TGG | - | tig0024656:56410-56429 | None:intergenic | 30.0% |
| ATGTATTCAAGAATTTCAGG+TGG | - | tig0024656:56431-56450 | None:intergenic | 30.0% | |
| AGGATGTATTCAAGAATTTC+AGG | - | tig0024656:56434-56453 | None:intergenic | 30.0% | |
| !! | TTTTGAGAGGAAGAAAAGAA+AGG | - | tig0024656:56454-56473 | None:intergenic | 30.0% |
| AATGAAGGAGAGAAAATCAA+TGG | - | tig0024656:56515-56534 | None:intergenic | 30.0% | |
| ! | TTCTCTTGGATTTTGCTAAA+AGG | - | tig0024656:56784-56803 | None:intergenic | 30.0% |
| TGGATATTGAATCTTTCTCT+TGG | - | tig0024656:56798-56817 | None:intergenic | 30.0% | |
| ! | ACATTTGTTACAACACCAAA+AGG | + | tig0024656:56845-56864 | Msa1418970:CDS | 30.0% |
| ! | CATTTGTTACAACACCAAAA+GGG | + | tig0024656:56846-56865 | Msa1418970:CDS | 30.0% |
| ATGAATCAAGCTCAAAGATT+TGG | + | tig0024656:56921-56940 | Msa1418970:CDS | 30.0% | |
| ! | TGGAAGAAATTCAATGGTTT+TGG | + | tig0024656:56941-56960 | Msa1418970:CDS | 30.0% |
| TGAGGATTATCACTTAGAAT+TGG | - | tig0024656:56968-56987 | None:intergenic | 30.0% | |
| ! | AACAAGGCGTTTACTTTAAA+GGG | + | tig0024656:56990-57009 | Msa1418970:CDS | 30.0% |
| TGTTCAGGTAAATTAGCAAT+TGG | - | tig0024656:57088-57107 | None:intergenic | 30.0% | |
| !! | ACAACTCACTTTTGTTAGAT+TGG | + | tig0024656:57105-57124 | Msa1418970:CDS | 30.0% |
| !!! | AAAACTGTTTTTGATTGGTG+GGG | + | tig0024656:57162-57181 | Msa1418970:CDS | 30.0% |
| AAATGAGTGAAGAAGGAAAT+TGG | + | tig0024656:57224-57243 | Msa1418970:CDS | 30.0% | |
| AATTTCCTACACATAAGATC+AGG | - | tig0024656:57268-57287 | None:intergenic | 30.0% | |
| !!! | GTTTATTGTTTTTGGCATGA+AGG | + | tig0024656:57319-57338 | Msa1418970:CDS | 30.0% |
| ! | GCCAGAGATTTTGTATTATT+TGG | + | tig0024656:57369-57388 | Msa1418970:CDS | 30.0% |
| CTCCAAATATTTGGATCCAT+TGG | - | tig0024656:56401-56420 | None:intergenic | 35.0% | |
| !! | AGAGACATGAATGTTTTGAG+AGG | - | tig0024656:56467-56486 | None:intergenic | 35.0% |
| !! | TCTCTAAGATCAACTTGCAA+AGG | + | tig0024656:56482-56501 | Msa1418970:CDS | 35.0% |
| ! | GATCAACTTGCAAAGGTTTT+TGG | + | tig0024656:56489-56508 | Msa1418970:CDS | 35.0% |
| GAAGAAGATGAAGATGATGA+AGG | - | tig0024656:56554-56573 | None:intergenic | 35.0% | |
| AATCATAGAGAGGAAAGTGA+CGG | - | tig0024656:56622-56641 | None:intergenic | 35.0% | |
| AAATATTACGCCATGTTCCA+AGG | - | tig0024656:56649-56668 | None:intergenic | 35.0% | |
| GAAACAAGAGTAGTGAAAGA+AGG | - | tig0024656:56704-56723 | None:intergenic | 35.0% | |
| ! | TTCACTACTCTTGTTTCTTC+TGG | + | tig0024656:56707-56726 | Msa1418970:CDS | 35.0% |
| AGTGATAATCCTCATCAACA+AGG | + | tig0024656:56974-56993 | Msa1418970:CDS | 35.0% | |
| ! | CAACAAGGCGTTTACTTTAA+AGG | + | tig0024656:56989-57008 | Msa1418970:CDS | 35.0% |
| TACACAACAGAAAATGGTTC+TGG | - | tig0024656:57034-57053 | None:intergenic | 35.0% | |
| !!! | GTGTATTTTGATTTGCAGAG+TGG | + | tig0024656:57049-57068 | Msa1418970:CDS | 35.0% |
| !! | TTGATTTGCAGAGTGGAAAA+TGG | + | tig0024656:57056-57075 | Msa1418970:CDS | 35.0% |
| ! | TGATTTGCAGAGTGGAAAAT+GGG | + | tig0024656:57057-57076 | Msa1418970:CDS | 35.0% |
| CTAACAAAAGTGAGTTGTTC+AGG | - | tig0024656:57103-57122 | None:intergenic | 35.0% | |
| ! | AATGATGATGCTGTTGAAGA+AGG | + | tig0024656:57136-57155 | Msa1418970:CDS | 35.0% |
| ! | ATTTGGTTTCTAGAAGGACT+TGG | + | tig0024656:57386-57405 | Msa1418970:CDS | 35.0% |
| CTACATTTGAAAGGCAAAGA+AGG | - | tig0024656:57430-57449 | None:intergenic | 35.0% | |
| AAACCACAGCTACATTTGAA+AGG | - | tig0024656:57439-57458 | None:intergenic | 35.0% | |
| !!! | AATGTAGCTGTGGTTTTAAG+TGG | + | tig0024656:57443-57462 | Msa1418970:CDS | 35.0% |
| CAAACTTCAGCATACAACTT+AGG | - | tig0024656:57481-57500 | None:intergenic | 35.0% | |
| CTCCAAATATTTGGATCCAT+TGG | - | tig0024656:56401-56420 | None:intergenic | 35.0% | |
| !! | AGAGACATGAATGTTTTGAG+AGG | - | tig0024656:56467-56486 | None:intergenic | 35.0% |
| !! | TCTCTAAGATCAACTTGCAA+AGG | + | tig0024656:56482-56501 | Msa1418970:CDS | 35.0% |
| ! | GATCAACTTGCAAAGGTTTT+TGG | + | tig0024656:56489-56508 | Msa1418970:CDS | 35.0% |
| GAAGAAGATGAAGATGATGA+AGG | - | tig0024656:56554-56573 | None:intergenic | 35.0% | |
| AATCATAGAGAGGAAAGTGA+CGG | - | tig0024656:56622-56641 | None:intergenic | 35.0% | |
| AAATATTACGCCATGTTCCA+AGG | - | tig0024656:56649-56668 | None:intergenic | 35.0% | |
| GAAACAAGAGTAGTGAAAGA+AGG | - | tig0024656:56704-56723 | None:intergenic | 35.0% | |
| ! | TTCACTACTCTTGTTTCTTC+TGG | + | tig0024656:56707-56726 | Msa1418970:CDS | 35.0% |
| AGTGATAATCCTCATCAACA+AGG | + | tig0024656:56974-56993 | Msa1418970:CDS | 35.0% | |
| ! | CAACAAGGCGTTTACTTTAA+AGG | + | tig0024656:56989-57008 | Msa1418970:CDS | 35.0% |
| TACACAACAGAAAATGGTTC+TGG | - | tig0024656:57034-57053 | None:intergenic | 35.0% | |
| !!! | GTGTATTTTGATTTGCAGAG+TGG | + | tig0024656:57049-57068 | Msa1418970:CDS | 35.0% |
| !! | TTGATTTGCAGAGTGGAAAA+TGG | + | tig0024656:57056-57075 | Msa1418970:CDS | 35.0% |
| ! | TGATTTGCAGAGTGGAAAAT+GGG | + | tig0024656:57057-57076 | Msa1418970:CDS | 35.0% |
| CTAACAAAAGTGAGTTGTTC+AGG | - | tig0024656:57103-57122 | None:intergenic | 35.0% | |
| ! | AATGATGATGCTGTTGAAGA+AGG | + | tig0024656:57136-57155 | Msa1418970:CDS | 35.0% |
| ! | ATTTGGTTTCTAGAAGGACT+TGG | + | tig0024656:57386-57405 | Msa1418970:CDS | 35.0% |
| CTACATTTGAAAGGCAAAGA+AGG | - | tig0024656:57430-57449 | None:intergenic | 35.0% | |
| AAACCACAGCTACATTTGAA+AGG | - | tig0024656:57439-57458 | None:intergenic | 35.0% | |
| !!! | AATGTAGCTGTGGTTTTAAG+TGG | + | tig0024656:57443-57462 | Msa1418970:CDS | 35.0% |
| CAAACTTCAGCATACAACTT+AGG | - | tig0024656:57481-57500 | None:intergenic | 35.0% | |
| ATGATTGCAACCTTGGAACA+TGG | + | tig0024656:56636-56655 | Msa1418970:CDS | 40.0% | |
| ! | ACTACTCTTGTTTCTTCTGG+TGG | + | tig0024656:56710-56729 | Msa1418970:CDS | 40.0% |
| ! | AAGTAAACGCCTTGTTGATG+AGG | - | tig0024656:56986-57005 | None:intergenic | 40.0% |
| !! | TGTTTTTGATTGGTGGGGTT+GGG | + | tig0024656:57167-57186 | Msa1418970:CDS | 40.0% |
| TTGGGAGCAATGGAATTTCA+AGG | + | tig0024656:57185-57204 | Msa1418970:CDS | 40.0% | |
| TTGTGGGAAATGAGTGAAGA+AGG | + | tig0024656:57217-57236 | Msa1418970:CDS | 40.0% | |
| GTTTGCCTGATCTTATGTGT+AGG | + | tig0024656:57260-57279 | Msa1418970:CDS | 40.0% | |
| ! | TTTCTAGAAGGACTTGGCAT+TGG | + | tig0024656:57392-57411 | Msa1418970:CDS | 40.0% |
| TTGCCTTTCAAATGTAGCTG+TGG | + | tig0024656:57433-57452 | Msa1418970:CDS | 40.0% | |
| ATGATTGCAACCTTGGAACA+TGG | + | tig0024656:56636-56655 | Msa1418970:CDS | 40.0% | |
| ! | ACTACTCTTGTTTCTTCTGG+TGG | + | tig0024656:56710-56729 | Msa1418970:CDS | 40.0% |
| ! | AAGTAAACGCCTTGTTGATG+AGG | - | tig0024656:56986-57005 | None:intergenic | 40.0% |
| !! | TGTTTTTGATTGGTGGGGTT+GGG | + | tig0024656:57167-57186 | Msa1418970:CDS | 40.0% |
| TTGGGAGCAATGGAATTTCA+AGG | + | tig0024656:57185-57204 | Msa1418970:CDS | 40.0% | |
| TTGTGGGAAATGAGTGAAGA+AGG | + | tig0024656:57217-57236 | Msa1418970:CDS | 40.0% | |
| GTTTGCCTGATCTTATGTGT+AGG | + | tig0024656:57260-57279 | Msa1418970:CDS | 40.0% | |
| ! | TTTCTAGAAGGACTTGGCAT+TGG | + | tig0024656:57392-57411 | Msa1418970:CDS | 40.0% |
| TTGCCTTTCAAATGTAGCTG+TGG | + | tig0024656:57433-57452 | Msa1418970:CDS | 40.0% | |
| GAAAGTGACGGTGGAATTGA+GGG | - | tig0024656:56610-56629 | None:intergenic | 45.0% | |
| CCAAGGTTGCAATCATAGAG+AGG | - | tig0024656:56632-56651 | None:intergenic | 45.0% | |
| CCTCTCTATGATTGCAACCT+TGG | + | tig0024656:56629-56648 | Msa1418970:CDS | 45.0% | |
| !!! | CTGTTTTTGATTGGTGGGGT+TGG | + | tig0024656:57166-57185 | Msa1418970:CDS | 45.0% |
| AAAGGCAAAGAAGGACACCT+AGG | - | tig0024656:57421-57440 | None:intergenic | 45.0% | |
| GAAAGTGACGGTGGAATTGA+GGG | - | tig0024656:56610-56629 | None:intergenic | 45.0% | |
| CCAAGGTTGCAATCATAGAG+AGG | - | tig0024656:56632-56651 | None:intergenic | 45.0% | |
| CCTCTCTATGATTGCAACCT+TGG | + | tig0024656:56629-56648 | Msa1418970:CDS | 45.0% | |
| !!! | CTGTTTTTGATTGGTGGGGT+TGG | + | tig0024656:57166-57185 | Msa1418970:CDS | 45.0% |
| AAAGGCAAAGAAGGACACCT+AGG | - | tig0024656:57421-57440 | None:intergenic | 45.0% | |
| GGAAAGTGACGGTGGAATTG+AGG | - | tig0024656:56611-56630 | None:intergenic | 50.0% | |
| CATAGAGAGGAAAGTGACGG+TGG | - | tig0024656:56619-56638 | None:intergenic | 50.0% | |
| GGAAAGTGACGGTGGAATTG+AGG | - | tig0024656:56611-56630 | None:intergenic | 50.0% | |
| CATAGAGAGGAAAGTGACGG+TGG | - | tig0024656:56619-56638 | None:intergenic | 50.0% | |
| ATTGGTGGGGTTGGGAGCAA+TGG | + | tig0024656:57175-57194 | Msa1418970:CDS | 55.0% | |
| !! | GGACTTGGCATTGGCTTCCT+AGG | + | tig0024656:57401-57420 | Msa1418970:CDS | 55.0% |
| ATTGGTGGGGTTGGGAGCAA+TGG | + | tig0024656:57175-57194 | Msa1418970:CDS | 55.0% | |
| !! | GGACTTGGCATTGGCTTCCT+AGG | + | tig0024656:57401-57420 | Msa1418970:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024656 | gene | 56356 | 57501 | 56356 | ID=Msa1418970;Name=Msa1418970 |
| tig0024656 | mRNA | 56356 | 57501 | 56356 | ID=Msa1418970-mRNA-1;Parent=Msa1418970;Name=Msa1418970-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|381 |
| tig0024656 | exon | 56356 | 57501 | 56356 | ID=Msa1418970-mRNA-1:exon:646;Parent=Msa1418970-mRNA-1 |
| tig0024656 | CDS | 56356 | 57501 | 56356 | ID=Msa1418970-mRNA-1:cds;Parent=Msa1418970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
