Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0097370 | sp|Q9FHS6|FK119_ARATH | 50.802 | 374 | 163 | 5 | 16 | 381 | 43 | 403 | 3.92e-109 | 328 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0097370 | A0A396JG55 | 96.084 | 383 | 12 | 2 | 1 | 381 | 13 | 394 | 0.0 | 748 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026630 | Msa0097370 | 0.800010 | 1.761086e-48 | -8.615850e-47 |
| Msa0043850 | Msa0097370 | 0.802914 | 4.473958e-49 | -8.615850e-47 |
| Msa0052360 | Msa0097370 | 0.985116 | 1.412105e-162 | -8.615850e-47 |
| Msa0077370 | Msa0097370 | 0.803701 | 3.074739e-49 | -8.615850e-47 |
| Msa0082420 | Msa0097370 | 0.828058 | 1.110172e-54 | -8.615850e-47 |
| Msa0090510 | Msa0097370 | 0.839521 | 1.507550e-57 | -8.615850e-47 |
| Msa0094710 | Msa0097370 | 0.814051 | 1.875382e-51 | -8.615850e-47 |
| Msa0097370 | Msa0136630 | 0.818693 | 1.715871e-52 | -8.615850e-47 |
| Msa0097370 | Msa0152560 | 0.825266 | 5.148354e-54 | -8.615850e-47 |
| Msa0097370 | Msa0160960 | 0.812001 | 5.281108e-51 | -8.615850e-47 |
| Msa0097370 | Msa0183910 | 0.819255 | 1.278479e-52 | -8.615850e-47 |
| Msa0097370 | Msa0187310 | 0.825805 | 3.837215e-54 | -8.615850e-47 |
| Msa0097370 | Msa0194920 | 0.802730 | 4.884274e-49 | -8.615850e-47 |
| Msa0097370 | Msa0224130 | 0.829495 | 4.987269e-55 | -8.615850e-47 |
| Msa0097370 | Msa0265270 | 0.827612 | 1.421032e-54 | -8.615850e-47 |
| Msa0097370 | Msa0374890 | 0.813893 | 2.032551e-51 | -8.615850e-47 |
| Msa0097370 | Msa0375070 | 0.806016 | 1.009583e-49 | -8.615850e-47 |
| Msa0097370 | Msa0382370 | 0.810378 | 1.187375e-50 | -8.615850e-47 |
| Msa0097370 | Msa0388730 | 0.821687 | 3.536024e-53 | -8.615850e-47 |
| Msa0097370 | Msa0432160 | 0.815178 | 1.056320e-51 | -8.615850e-47 |
| Msa0097370 | Msa0470880 | 0.813206 | 2.878407e-51 | -8.615850e-47 |
| Msa0097370 | Msa0476680 | 0.821966 | 3.048532e-53 | -8.615850e-47 |
| Msa0097370 | Msa0521010 | 0.820167 | 7.914104e-53 | -8.615850e-47 |
| Msa0097370 | Msa0545020 | 0.844460 | 7.455977e-59 | -8.615850e-47 |
| Msa0097370 | Msa0545050 | 0.845016 | 5.281247e-59 | -8.615850e-47 |
| Msa0097370 | Msa0567370 | 0.803745 | 3.011041e-49 | -8.615850e-47 |
| Msa0097370 | Msa0592330 | 0.836407 | 9.526734e-57 | -8.615850e-47 |
| Msa0097370 | Msa0600590 | 0.844922 | 5.599528e-59 | -8.615850e-47 |
| Msa0097370 | Msa0641130 | 0.838982 | 2.079891e-57 | -8.615850e-47 |
| Msa0097370 | Msa0653670 | 0.804830 | 1.789667e-49 | -8.615850e-47 |
| Msa0097370 | Msa0679670 | 0.818314 | 2.091186e-52 | -8.615850e-47 |
| Msa0097370 | Msa0697680 | 0.809224 | 2.102623e-50 | -8.615850e-47 |
| Msa0097370 | Msa0703810 | 0.810605 | 1.060688e-50 | -8.615850e-47 |
| Msa0097370 | Msa0744640 | 0.806138 | 9.513921e-50 | -8.615850e-47 |
| Msa0097370 | Msa0841730 | 0.806776 | 6.979439e-50 | -8.615850e-47 |
| Msa0097370 | Msa0880810 | 0.800217 | 1.598394e-48 | -8.615850e-47 |
| Msa0097370 | Msa0910620 | 0.800507 | 1.395044e-48 | -8.615850e-47 |
| Msa0097370 | Msa0965290 | 0.807593 | 4.685394e-50 | -8.615850e-47 |
| Msa0097370 | Msa0985180 | 0.826252 | 3.003667e-54 | -8.615850e-47 |
| Msa0097370 | Msa0999680 | 0.805593 | 1.238495e-49 | -8.615850e-47 |
| Msa0097370 | Msa1011250 | 0.813542 | 2.427677e-51 | -8.615850e-47 |
| Msa0097370 | Msa1022030 | 0.808523 | 2.969684e-50 | -8.615850e-47 |
| Msa0097370 | Msa1044510 | 0.839405 | 1.615914e-57 | -8.615850e-47 |
| Msa0097370 | Msa1062040 | 0.831327 | 1.777143e-55 | -8.615850e-47 |
| Msa0097370 | Msa1063360 | 0.850969 | 1.203632e-60 | -8.615850e-47 |
| Msa0097370 | Msa1070540 | 0.818638 | 1.766243e-52 | -8.615850e-47 |
| Msa0097370 | Msa1089190 | 0.813083 | 3.063200e-51 | -8.615850e-47 |
| Msa0097370 | Msa1101240 | 0.815169 | 1.060711e-51 | -8.615850e-47 |
| Msa0097370 | Msa1107200 | 0.830099 | 3.554596e-55 | -8.615850e-47 |
| Msa0097370 | Msa1108710 | 0.828753 | 7.543368e-55 | -8.615850e-47 |
| Msa0097370 | Msa1150780 | 0.820185 | 7.837185e-53 | -8.615850e-47 |
| Msa0097370 | Msa1188350 | 0.806630 | 7.494664e-50 | -8.615850e-47 |
| Msa0097370 | Msa1208110 | 0.802162 | 6.395327e-49 | -8.615850e-47 |
| Msa0097370 | Msa1208990 | 0.821607 | 3.691060e-53 | -8.615850e-47 |
| Msa0097370 | Msa1256330 | 0.819054 | 1.420441e-52 | -8.615850e-47 |
| Msa0097370 | Msa1260060 | 0.804262 | 2.350391e-49 | -8.615850e-47 |
| Msa0097370 | Msa1277780 | 0.804181 | 2.443487e-49 | -8.615850e-47 |
| Msa0097370 | Msa1312440 | 0.802326 | 5.916012e-49 | -8.615850e-47 |
| Msa0097370 | Msa1316460 | 0.801680 | 8.030883e-49 | -8.615850e-47 |
| Msa0097370 | Msa1364080 | 0.822434 | 2.374324e-53 | -8.615850e-47 |
| Msa0097370 | Msa1369920 | -0.829371 | 5.343826e-55 | -8.615850e-47 |
| Msa0097370 | Msa1370420 | 0.802050 | 6.743522e-49 | -8.615850e-47 |
| Msa0097370 | Msa1402350 | 0.803920 | 2.768576e-49 | -8.615850e-47 |
| Msa0097370 | Msa1407760 | 0.831709 | 1.431161e-55 | -8.615850e-47 |
| Msa0097370 | Msa1407880 | 0.806211 | 9.181586e-50 | -8.615850e-47 |
| Msa0097370 | Msa1418970 | 0.958826 | 8.977346e-117 | -8.615850e-47 |
| Msa0097370 | Msa1419840 | 0.813194 | 2.896370e-51 | -8.615850e-47 |
| Msa0097370 | Msa1437730 | 0.828601 | 8.210230e-55 | -8.615850e-47 |
| Msa0097370 | Msa1450440 | 0.811595 | 6.471184e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0097370 | MtrunA17_Chr1g0152611 | 96.084 | 383 | 12 | 2 | 1 | 381 | 13 | 394 | 0.0 | 748 |
| Msa0097370 | MtrunA17_Chr7g0220421 | 26.536 | 358 | 230 | 11 | 5 | 354 | 82 | 414 | 3.07e-21 | 94.7 |
| Msa0097370 | MtrunA17_Chr3g0122401 | 22.881 | 354 | 237 | 12 | 16 | 357 | 111 | 440 | 3.16e-18 | 85.9 |
| Msa0097370 | MtrunA17_Chr4g0052791 | 26.119 | 402 | 235 | 15 | 16 | 381 | 55 | 430 | 4.34e-17 | 82.4 |
| Msa0097370 | MtrunA17_Chr8g0347881 | 24.093 | 386 | 232 | 18 | 24 | 377 | 44 | 400 | 7.50e-13 | 69.3 |
| Msa0097370 | MtrunA17_Chr1g0161871 | 24.324 | 296 | 180 | 11 | 16 | 293 | 24 | 293 | 9.66e-13 | 68.9 |
| Msa0097370 | MtrunA17_Chr8g0347851 | 24.282 | 383 | 230 | 20 | 24 | 377 | 44 | 395 | 8.56e-12 | 66.2 |
| Msa0097370 | MtrunA17_Chr4g0003651 | 23.858 | 394 | 208 | 20 | 20 | 363 | 1 | 352 | 5.62e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0097370 | AT5G43190.1 | 50.802 | 374 | 163 | 5 | 16 | 381 | 43 | 403 | 3.98e-110 | 328 |
| Msa0097370 | AT5G15710.1 | 26.062 | 353 | 236 | 10 | 11 | 357 | 94 | 427 | 6.90e-25 | 105 |
| Msa0097370 | AT5G15710.2 | 26.062 | 353 | 236 | 10 | 11 | 357 | 94 | 427 | 6.90e-25 | 105 |
| Msa0097370 | AT1G27340.1 | 24.523 | 367 | 234 | 13 | 7 | 357 | 103 | 442 | 4.82e-19 | 89.0 |
Find 58 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTAATTTGCTCCAAATATT+TGG | 0.127540 | 1_3:-3185547 | None:intergenic |
| CAACAAGGCGTTTACTTTAA+AGG | 0.179983 | 1_3:+3186129 | Msa0097370:CDS |
| TTCCAATGGATCCAAATATT+TGG | 0.191017 | 1_3:+3185536 | Msa0097370:CDS |
| TTCACTACTCTTGTTTCTTC+TGG | 0.199496 | 1_3:+3185847 | Msa0097370:CDS |
| TGGAAGAAATTCAATGGTTT+TGG | 0.238628 | 1_3:+3186081 | Msa0097370:CDS |
| TCAAAATACACAACAGAAAA+TGG | 0.244990 | 1_3:-3186177 | None:intergenic |
| TTGATTTGCAGAGTGGAAAA+TGG | 0.245802 | 1_3:+3186196 | Msa0097370:CDS |
| TCAATGTGAATATTGAAATT+TGG | 0.282093 | 1_3:-3185955 | None:intergenic |
| AGGATGTATTCAAGAATTTC+AGG | 0.295437 | 1_3:-3185571 | None:intergenic |
| ATGAATCAAGCTCAAAGATT+TGG | 0.301695 | 1_3:+3186061 | Msa0097370:CDS |
| AGTAAGAGAAAAGAAGAAAA+AGG | 0.302452 | 1_3:-3185718 | None:intergenic |
| AACAAGGCGTTTACTTTAAA+GGG | 0.310157 | 1_3:+3186130 | Msa0097370:CDS |
| AAATGAGTGAAGAAGGAAAT+TGG | 0.316705 | 1_3:+3186364 | Msa0097370:CDS |
| CCTCTCTATGATTGCAACCT+TGG | 0.347354 | 1_3:+3185769 | Msa0097370:CDS |
| CTAACAAAAGTGAGTTGTTC+AGG | 0.365596 | 1_3:-3186240 | None:intergenic |
| TGAGGATTATCACTTAGAAT+TGG | 0.376949 | 1_3:-3186105 | None:intergenic |
| CTCCAAATATTTGGATCCAT+TGG | 0.381259 | 1_3:-3185538 | None:intergenic |
| GAACTTGGCATTGGCTTCCT+AGG | 0.388345 | 1_3:+3186541 | Msa0097370:CDS |
| TTCAAGGAGTATTAAATTGT+GGG | 0.389256 | 1_3:+3186341 | Msa0097370:CDS |
| TGATTTGCAGAGTGGAAAAT+GGG | 0.399064 | 1_3:+3186197 | Msa0097370:CDS |
| ATTGGTGGGGTTGGGAGCAA+TGG | 0.400554 | 1_3:+3186315 | Msa0097370:CDS |
| GGAAAGTGACGGTGGAATTG+AGG | 0.421377 | 1_3:-3185748 | None:intergenic |
| TGGATATTGAATCTTTCTCT+TGG | 0.423695 | 1_3:-3185935 | None:intergenic |
| ACATTTGTTACAACACCAAA+AGG | 0.424367 | 1_3:+3185985 | Msa0097370:CDS |
| ACCAAATAATACAAAATCTC+TGG | 0.431057 | 1_3:-3186510 | None:intergenic |
| TTTCAAGGAGTATTAAATTG+TGG | 0.434624 | 1_3:+3186340 | Msa0097370:CDS |
| TACACAACAGAAAATGGTTC+TGG | 0.435903 | 1_3:-3186171 | None:intergenic |
| CAAACTTCAGCATACAACTT+AGG | 0.436734 | 1_3:-3186618 | None:intergenic |
| GAAAGTGACGGTGGAATTGA+GGG | 0.445405 | 1_3:-3185747 | None:intergenic |
| AAGATTTGGAAGAAATTCAA+TGG | 0.448212 | 1_3:+3186075 | Msa0097370:CDS |
| TGTTCAGGTAAATTAGCAAT+TGG | 0.452549 | 1_3:-3186225 | None:intergenic |
| TTTGTATTTGTTGTTATACT+TGG | 0.460439 | 1_3:+3186487 | Msa0097370:CDS |
| GAAACAAGAGTAGTGAAAGA+AGG | 0.482207 | 1_3:-3185841 | None:intergenic |
| ACTACTCTTGTTTCTTCTGG+TGG | 0.490392 | 1_3:+3185850 | Msa0097370:CDS |
| TTGTGGGAAATGAGTGAAGA+AGG | 0.500793 | 1_3:+3186357 | Msa0097370:CDS |
| CTACATTTGAAAGGCAAAGA+AGG | 0.506052 | 1_3:-3186567 | None:intergenic |
| ATTTGGTTTCTAGAAGAACT+TGG | 0.507365 | 1_3:+3186526 | Msa0097370:CDS |
| TTGCCTTTCAAATGTAGCTG+TGG | 0.517342 | 1_3:+3186573 | Msa0097370:CDS |
| TTGGGAGCAATGGAATTTCA+AGG | 0.520457 | 1_3:+3186325 | Msa0097370:CDS |
| AAGTAAACGCCTTGTTGATG+AGG | 0.522009 | 1_3:-3186123 | None:intergenic |
| AATGAAGGAGAGAAAATCAA+TGG | 0.526398 | 1_3:-3185652 | None:intergenic |
| TTTCTAGAAGAACTTGGCAT+TGG | 0.527075 | 1_3:+3186532 | Msa0097370:CDS |
| CAATCTTAAATCACTTCCAA+TGG | 0.529406 | 1_3:+3185522 | Msa0097370:CDS |
| AAACCACAGCTACATTTGAA+AGG | 0.547126 | 1_3:-3186576 | None:intergenic |
| TCTCTAAGATCAACTTGCAA+AGG | 0.552005 | 1_3:+3185622 | Msa0097370:CDS |
| AAATATTACGCCATGTTCCA+AGG | 0.553994 | 1_3:-3185786 | None:intergenic |
| CATTTGTTACAACACCAAAA+GGG | 0.556102 | 1_3:+3185986 | Msa0097370:CDS |
| AATGATGATGCTGTTGAAGA+AGG | 0.574036 | 1_3:+3186276 | Msa0097370:CDS |
| ATGATTGCAACCTTGGAACA+TGG | 0.574086 | 1_3:+3185776 | Msa0097370:CDS |
| GAAGAAGATGAAGATGATGA+AGG | 0.579340 | 1_3:-3185691 | None:intergenic |
| AATTTCCTACACATAAGATC+AGG | 0.581580 | 1_3:-3186405 | None:intergenic |
| GTTTGCCTGATCTTATGTGT+AGG | 0.598013 | 1_3:+3186400 | Msa0097370:CDS |
| CCAAGGTTGCAATCATAGAG+AGG | 0.624704 | 1_3:-3185769 | None:intergenic |
| AAAGGCAAAGAAGGACACCT+AGG | 0.645464 | 1_3:-3186558 | None:intergenic |
| CATAGAGAGGAAAGTGACGG+TGG | 0.658591 | 1_3:-3185756 | None:intergenic |
| AGTGATAATCCTCATCAACA+AGG | 0.667224 | 1_3:+3186114 | Msa0097370:CDS |
| ATGTATTCAAGAATTTCAGG+TGG | 0.686194 | 1_3:-3185568 | None:intergenic |
| AATCATAGAGAGGAAAGTGA+CGG | 0.700567 | 1_3:-3185759 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAATGTGAATATTGAAATT+TGG | - | chr1_3:3185958-3185977 | None:intergenic | 20.0% |
| !!! | TTTGTATTTGTTGTTATACT+TGG | + | chr1_3:3186487-3186506 | Msa0097370:CDS | 20.0% |
| !! | TCAATGTGAATATTGAAATT+TGG | - | chr1_3:3185958-3185977 | None:intergenic | 20.0% |
| !!! | TTTGTATTTGTTGTTATACT+TGG | + | chr1_3:3186487-3186506 | Msa0097370:CDS | 20.0% |
| !!! | GAATGTTTTGAAATGAATGA+AGG | - | chr1_3:3185670-3185689 | None:intergenic | 25.0% |
| ! | AGTAAGAGAAAAGAAGAAAA+AGG | - | chr1_3:3185721-3185740 | None:intergenic | 25.0% |
| !! | ACAAAAATGATATACCCTTT+TGG | - | chr1_3:3186003-3186022 | None:intergenic | 25.0% |
| ! | AAGATTTGGAAGAAATTCAA+TGG | + | chr1_3:3186075-3186094 | Msa0097370:CDS | 25.0% |
| ! | TCAAAATACACAACAGAAAA+TGG | - | chr1_3:3186180-3186199 | None:intergenic | 25.0% |
| !!! | GGTAAAAAACTGTTTTTGAT+TGG | + | chr1_3:3186297-3186316 | Msa0097370:CDS | 25.0% |
| !!! | AAAAAACTGTTTTTGATTGG+TGG | + | chr1_3:3186300-3186319 | Msa0097370:CDS | 25.0% |
| !!! | AAAAACTGTTTTTGATTGGT+GGG | + | chr1_3:3186301-3186320 | Msa0097370:CDS | 25.0% |
| !!! | TTTCAAGGAGTATTAAATTG+TGG | + | chr1_3:3186340-3186359 | Msa0097370:CDS | 25.0% |
| !!! | TTCAAGGAGTATTAAATTGT+GGG | + | chr1_3:3186341-3186360 | Msa0097370:CDS | 25.0% |
| !! | ATGAGCATGTTTATTGTTTT+TGG | + | chr1_3:3186451-3186470 | Msa0097370:CDS | 25.0% |
| ! | ACCAAATAATACAAAATCTC+TGG | - | chr1_3:3186513-3186532 | None:intergenic | 25.0% |
| !!! | GAATGTTTTGAAATGAATGA+AGG | - | chr1_3:3185670-3185689 | None:intergenic | 25.0% |
| ! | AGTAAGAGAAAAGAAGAAAA+AGG | - | chr1_3:3185721-3185740 | None:intergenic | 25.0% |
| !! | ACAAAAATGATATACCCTTT+TGG | - | chr1_3:3186003-3186022 | None:intergenic | 25.0% |
| ! | AAGATTTGGAAGAAATTCAA+TGG | + | chr1_3:3186075-3186094 | Msa0097370:CDS | 25.0% |
| ! | TCAAAATACACAACAGAAAA+TGG | - | chr1_3:3186180-3186199 | None:intergenic | 25.0% |
| !!! | GGTAAAAAACTGTTTTTGAT+TGG | + | chr1_3:3186297-3186316 | Msa0097370:CDS | 25.0% |
| !!! | AAAAAACTGTTTTTGATTGG+TGG | + | chr1_3:3186300-3186319 | Msa0097370:CDS | 25.0% |
| !!! | AAAAACTGTTTTTGATTGGT+GGG | + | chr1_3:3186301-3186320 | Msa0097370:CDS | 25.0% |
| !!! | TTTCAAGGAGTATTAAATTG+TGG | + | chr1_3:3186340-3186359 | Msa0097370:CDS | 25.0% |
| !!! | TTCAAGGAGTATTAAATTGT+GGG | + | chr1_3:3186341-3186360 | Msa0097370:CDS | 25.0% |
| !! | ATGAGCATGTTTATTGTTTT+TGG | + | chr1_3:3186451-3186470 | Msa0097370:CDS | 25.0% |
| ! | ACCAAATAATACAAAATCTC+TGG | - | chr1_3:3186513-3186532 | None:intergenic | 25.0% |
| CAATCTTAAATCACTTCCAA+TGG | + | chr1_3:3185522-3185541 | Msa0097370:CDS | 30.0% | |
| TTCCAATGGATCCAAATATT+TGG | + | chr1_3:3185536-3185555 | Msa0097370:CDS | 30.0% | |
| !! | GGTAATTTGCTCCAAATATT+TGG | - | chr1_3:3185550-3185569 | None:intergenic | 30.0% |
| ATGTATTCAAGAATTTCAGG+TGG | - | chr1_3:3185571-3185590 | None:intergenic | 30.0% | |
| AGGATGTATTCAAGAATTTC+AGG | - | chr1_3:3185574-3185593 | None:intergenic | 30.0% | |
| !! | TTTTGAGAGGAAGAAAAGAA+AGG | - | chr1_3:3185594-3185613 | None:intergenic | 30.0% |
| AATGAAGGAGAGAAAATCAA+TGG | - | chr1_3:3185655-3185674 | None:intergenic | 30.0% | |
| ! | TTCTCTTGGATTTTGCTAAA+AGG | - | chr1_3:3185924-3185943 | None:intergenic | 30.0% |
| TGGATATTGAATCTTTCTCT+TGG | - | chr1_3:3185938-3185957 | None:intergenic | 30.0% | |
| ! | ACATTTGTTACAACACCAAA+AGG | + | chr1_3:3185985-3186004 | Msa0097370:CDS | 30.0% |
| ! | CATTTGTTACAACACCAAAA+GGG | + | chr1_3:3185986-3186005 | Msa0097370:CDS | 30.0% |
| ATGAATCAAGCTCAAAGATT+TGG | + | chr1_3:3186061-3186080 | Msa0097370:CDS | 30.0% | |
| ! | TGGAAGAAATTCAATGGTTT+TGG | + | chr1_3:3186081-3186100 | Msa0097370:CDS | 30.0% |
| TGAGGATTATCACTTAGAAT+TGG | - | chr1_3:3186108-3186127 | None:intergenic | 30.0% | |
| ! | AACAAGGCGTTTACTTTAAA+GGG | + | chr1_3:3186130-3186149 | Msa0097370:CDS | 30.0% |
| TGTTCAGGTAAATTAGCAAT+TGG | - | chr1_3:3186228-3186247 | None:intergenic | 30.0% | |
| !! | ACAACTCACTTTTGTTAGAT+TGG | + | chr1_3:3186245-3186264 | Msa0097370:CDS | 30.0% |
| !!! | AAAACTGTTTTTGATTGGTG+GGG | + | chr1_3:3186302-3186321 | Msa0097370:CDS | 30.0% |
| AAATGAGTGAAGAAGGAAAT+TGG | + | chr1_3:3186364-3186383 | Msa0097370:CDS | 30.0% | |
| AATTTCCTACACATAAGATC+AGG | - | chr1_3:3186408-3186427 | None:intergenic | 30.0% | |
| !!! | GTTTATTGTTTTTGGCATGA+AGG | + | chr1_3:3186459-3186478 | Msa0097370:CDS | 30.0% |
| ! | GCCAGAGATTTTGTATTATT+TGG | + | chr1_3:3186509-3186528 | Msa0097370:CDS | 30.0% |
| ! | ATTTGGTTTCTAGAAGAACT+TGG | + | chr1_3:3186526-3186545 | Msa0097370:CDS | 30.0% |
| CAATCTTAAATCACTTCCAA+TGG | + | chr1_3:3185522-3185541 | Msa0097370:CDS | 30.0% | |
| TTCCAATGGATCCAAATATT+TGG | + | chr1_3:3185536-3185555 | Msa0097370:CDS | 30.0% | |
| !! | GGTAATTTGCTCCAAATATT+TGG | - | chr1_3:3185550-3185569 | None:intergenic | 30.0% |
| ATGTATTCAAGAATTTCAGG+TGG | - | chr1_3:3185571-3185590 | None:intergenic | 30.0% | |
| AGGATGTATTCAAGAATTTC+AGG | - | chr1_3:3185574-3185593 | None:intergenic | 30.0% | |
| !! | TTTTGAGAGGAAGAAAAGAA+AGG | - | chr1_3:3185594-3185613 | None:intergenic | 30.0% |
| AATGAAGGAGAGAAAATCAA+TGG | - | chr1_3:3185655-3185674 | None:intergenic | 30.0% | |
| ! | TTCTCTTGGATTTTGCTAAA+AGG | - | chr1_3:3185924-3185943 | None:intergenic | 30.0% |
| TGGATATTGAATCTTTCTCT+TGG | - | chr1_3:3185938-3185957 | None:intergenic | 30.0% | |
| ! | ACATTTGTTACAACACCAAA+AGG | + | chr1_3:3185985-3186004 | Msa0097370:CDS | 30.0% |
| ! | CATTTGTTACAACACCAAAA+GGG | + | chr1_3:3185986-3186005 | Msa0097370:CDS | 30.0% |
| ATGAATCAAGCTCAAAGATT+TGG | + | chr1_3:3186061-3186080 | Msa0097370:CDS | 30.0% | |
| ! | TGGAAGAAATTCAATGGTTT+TGG | + | chr1_3:3186081-3186100 | Msa0097370:CDS | 30.0% |
| TGAGGATTATCACTTAGAAT+TGG | - | chr1_3:3186108-3186127 | None:intergenic | 30.0% | |
| ! | AACAAGGCGTTTACTTTAAA+GGG | + | chr1_3:3186130-3186149 | Msa0097370:CDS | 30.0% |
| TGTTCAGGTAAATTAGCAAT+TGG | - | chr1_3:3186228-3186247 | None:intergenic | 30.0% | |
| !! | ACAACTCACTTTTGTTAGAT+TGG | + | chr1_3:3186245-3186264 | Msa0097370:CDS | 30.0% |
| !!! | AAAACTGTTTTTGATTGGTG+GGG | + | chr1_3:3186302-3186321 | Msa0097370:CDS | 30.0% |
| AAATGAGTGAAGAAGGAAAT+TGG | + | chr1_3:3186364-3186383 | Msa0097370:CDS | 30.0% | |
| AATTTCCTACACATAAGATC+AGG | - | chr1_3:3186408-3186427 | None:intergenic | 30.0% | |
| !!! | GTTTATTGTTTTTGGCATGA+AGG | + | chr1_3:3186459-3186478 | Msa0097370:CDS | 30.0% |
| ! | GCCAGAGATTTTGTATTATT+TGG | + | chr1_3:3186509-3186528 | Msa0097370:CDS | 30.0% |
| ! | ATTTGGTTTCTAGAAGAACT+TGG | + | chr1_3:3186526-3186545 | Msa0097370:CDS | 30.0% |
| CTCCAAATATTTGGATCCAT+TGG | - | chr1_3:3185541-3185560 | None:intergenic | 35.0% | |
| !! | AGAGACATGAATGTTTTGAG+AGG | - | chr1_3:3185607-3185626 | None:intergenic | 35.0% |
| !! | TCTCTAAGATCAACTTGCAA+AGG | + | chr1_3:3185622-3185641 | Msa0097370:CDS | 35.0% |
| ! | GATCAACTTGCAAAGGTTTT+TGG | + | chr1_3:3185629-3185648 | Msa0097370:CDS | 35.0% |
| GAAGAAGATGAAGATGATGA+AGG | - | chr1_3:3185694-3185713 | None:intergenic | 35.0% | |
| AATCATAGAGAGGAAAGTGA+CGG | - | chr1_3:3185762-3185781 | None:intergenic | 35.0% | |
| AAATATTACGCCATGTTCCA+AGG | - | chr1_3:3185789-3185808 | None:intergenic | 35.0% | |
| GAAACAAGAGTAGTGAAAGA+AGG | - | chr1_3:3185844-3185863 | None:intergenic | 35.0% | |
| ! | TTCACTACTCTTGTTTCTTC+TGG | + | chr1_3:3185847-3185866 | Msa0097370:CDS | 35.0% |
| AGTGATAATCCTCATCAACA+AGG | + | chr1_3:3186114-3186133 | Msa0097370:CDS | 35.0% | |
| ! | CAACAAGGCGTTTACTTTAA+AGG | + | chr1_3:3186129-3186148 | Msa0097370:CDS | 35.0% |
| TACACAACAGAAAATGGTTC+TGG | - | chr1_3:3186174-3186193 | None:intergenic | 35.0% | |
| !!! | GTGTATTTTGATTTGCAGAG+TGG | + | chr1_3:3186189-3186208 | Msa0097370:CDS | 35.0% |
| !! | TTGATTTGCAGAGTGGAAAA+TGG | + | chr1_3:3186196-3186215 | Msa0097370:CDS | 35.0% |
| ! | TGATTTGCAGAGTGGAAAAT+GGG | + | chr1_3:3186197-3186216 | Msa0097370:CDS | 35.0% |
| CTAACAAAAGTGAGTTGTTC+AGG | - | chr1_3:3186243-3186262 | None:intergenic | 35.0% | |
| ! | AATGATGATGCTGTTGAAGA+AGG | + | chr1_3:3186276-3186295 | Msa0097370:CDS | 35.0% |
| ! | TTTCTAGAAGAACTTGGCAT+TGG | + | chr1_3:3186532-3186551 | Msa0097370:CDS | 35.0% |
| CTACATTTGAAAGGCAAAGA+AGG | - | chr1_3:3186570-3186589 | None:intergenic | 35.0% | |
| AAACCACAGCTACATTTGAA+AGG | - | chr1_3:3186579-3186598 | None:intergenic | 35.0% | |
| !!! | AATGTAGCTGTGGTTTTAAG+TGG | + | chr1_3:3186583-3186602 | Msa0097370:CDS | 35.0% |
| CAAACTTCAGCATACAACTT+AGG | - | chr1_3:3186621-3186640 | None:intergenic | 35.0% | |
| CTCCAAATATTTGGATCCAT+TGG | - | chr1_3:3185541-3185560 | None:intergenic | 35.0% | |
| !! | AGAGACATGAATGTTTTGAG+AGG | - | chr1_3:3185607-3185626 | None:intergenic | 35.0% |
| !! | TCTCTAAGATCAACTTGCAA+AGG | + | chr1_3:3185622-3185641 | Msa0097370:CDS | 35.0% |
| ! | GATCAACTTGCAAAGGTTTT+TGG | + | chr1_3:3185629-3185648 | Msa0097370:CDS | 35.0% |
| GAAGAAGATGAAGATGATGA+AGG | - | chr1_3:3185694-3185713 | None:intergenic | 35.0% | |
| AATCATAGAGAGGAAAGTGA+CGG | - | chr1_3:3185762-3185781 | None:intergenic | 35.0% | |
| AAATATTACGCCATGTTCCA+AGG | - | chr1_3:3185789-3185808 | None:intergenic | 35.0% | |
| GAAACAAGAGTAGTGAAAGA+AGG | - | chr1_3:3185844-3185863 | None:intergenic | 35.0% | |
| ! | TTCACTACTCTTGTTTCTTC+TGG | + | chr1_3:3185847-3185866 | Msa0097370:CDS | 35.0% |
| AGTGATAATCCTCATCAACA+AGG | + | chr1_3:3186114-3186133 | Msa0097370:CDS | 35.0% | |
| ! | CAACAAGGCGTTTACTTTAA+AGG | + | chr1_3:3186129-3186148 | Msa0097370:CDS | 35.0% |
| TACACAACAGAAAATGGTTC+TGG | - | chr1_3:3186174-3186193 | None:intergenic | 35.0% | |
| !!! | GTGTATTTTGATTTGCAGAG+TGG | + | chr1_3:3186189-3186208 | Msa0097370:CDS | 35.0% |
| !! | TTGATTTGCAGAGTGGAAAA+TGG | + | chr1_3:3186196-3186215 | Msa0097370:CDS | 35.0% |
| ! | TGATTTGCAGAGTGGAAAAT+GGG | + | chr1_3:3186197-3186216 | Msa0097370:CDS | 35.0% |
| CTAACAAAAGTGAGTTGTTC+AGG | - | chr1_3:3186243-3186262 | None:intergenic | 35.0% | |
| ! | AATGATGATGCTGTTGAAGA+AGG | + | chr1_3:3186276-3186295 | Msa0097370:CDS | 35.0% |
| ! | TTTCTAGAAGAACTTGGCAT+TGG | + | chr1_3:3186532-3186551 | Msa0097370:CDS | 35.0% |
| CTACATTTGAAAGGCAAAGA+AGG | - | chr1_3:3186570-3186589 | None:intergenic | 35.0% | |
| AAACCACAGCTACATTTGAA+AGG | - | chr1_3:3186579-3186598 | None:intergenic | 35.0% | |
| !!! | AATGTAGCTGTGGTTTTAAG+TGG | + | chr1_3:3186583-3186602 | Msa0097370:CDS | 35.0% |
| CAAACTTCAGCATACAACTT+AGG | - | chr1_3:3186621-3186640 | None:intergenic | 35.0% | |
| ATGATTGCAACCTTGGAACA+TGG | + | chr1_3:3185776-3185795 | Msa0097370:CDS | 40.0% | |
| ! | ACTACTCTTGTTTCTTCTGG+TGG | + | chr1_3:3185850-3185869 | Msa0097370:CDS | 40.0% |
| ! | AAGTAAACGCCTTGTTGATG+AGG | - | chr1_3:3186126-3186145 | None:intergenic | 40.0% |
| !! | TGTTTTTGATTGGTGGGGTT+GGG | + | chr1_3:3186307-3186326 | Msa0097370:CDS | 40.0% |
| TTGGGAGCAATGGAATTTCA+AGG | + | chr1_3:3186325-3186344 | Msa0097370:CDS | 40.0% | |
| TTGTGGGAAATGAGTGAAGA+AGG | + | chr1_3:3186357-3186376 | Msa0097370:CDS | 40.0% | |
| GTTTGCCTGATCTTATGTGT+AGG | + | chr1_3:3186400-3186419 | Msa0097370:CDS | 40.0% | |
| TTGCCTTTCAAATGTAGCTG+TGG | + | chr1_3:3186573-3186592 | Msa0097370:CDS | 40.0% | |
| ATGATTGCAACCTTGGAACA+TGG | + | chr1_3:3185776-3185795 | Msa0097370:CDS | 40.0% | |
| ! | ACTACTCTTGTTTCTTCTGG+TGG | + | chr1_3:3185850-3185869 | Msa0097370:CDS | 40.0% |
| ! | AAGTAAACGCCTTGTTGATG+AGG | - | chr1_3:3186126-3186145 | None:intergenic | 40.0% |
| !! | TGTTTTTGATTGGTGGGGTT+GGG | + | chr1_3:3186307-3186326 | Msa0097370:CDS | 40.0% |
| TTGGGAGCAATGGAATTTCA+AGG | + | chr1_3:3186325-3186344 | Msa0097370:CDS | 40.0% | |
| TTGTGGGAAATGAGTGAAGA+AGG | + | chr1_3:3186357-3186376 | Msa0097370:CDS | 40.0% | |
| GTTTGCCTGATCTTATGTGT+AGG | + | chr1_3:3186400-3186419 | Msa0097370:CDS | 40.0% | |
| TTGCCTTTCAAATGTAGCTG+TGG | + | chr1_3:3186573-3186592 | Msa0097370:CDS | 40.0% | |
| GAAAGTGACGGTGGAATTGA+GGG | - | chr1_3:3185750-3185769 | None:intergenic | 45.0% | |
| CCAAGGTTGCAATCATAGAG+AGG | - | chr1_3:3185772-3185791 | None:intergenic | 45.0% | |
| CCTCTCTATGATTGCAACCT+TGG | + | chr1_3:3185769-3185788 | Msa0097370:CDS | 45.0% | |
| !!! | CTGTTTTTGATTGGTGGGGT+TGG | + | chr1_3:3186306-3186325 | Msa0097370:CDS | 45.0% |
| AAAGGCAAAGAAGGACACCT+AGG | - | chr1_3:3186561-3186580 | None:intergenic | 45.0% | |
| GAAAGTGACGGTGGAATTGA+GGG | - | chr1_3:3185750-3185769 | None:intergenic | 45.0% | |
| CCAAGGTTGCAATCATAGAG+AGG | - | chr1_3:3185772-3185791 | None:intergenic | 45.0% | |
| CCTCTCTATGATTGCAACCT+TGG | + | chr1_3:3185769-3185788 | Msa0097370:CDS | 45.0% | |
| !!! | CTGTTTTTGATTGGTGGGGT+TGG | + | chr1_3:3186306-3186325 | Msa0097370:CDS | 45.0% |
| AAAGGCAAAGAAGGACACCT+AGG | - | chr1_3:3186561-3186580 | None:intergenic | 45.0% | |
| GGAAAGTGACGGTGGAATTG+AGG | - | chr1_3:3185751-3185770 | None:intergenic | 50.0% | |
| CATAGAGAGGAAAGTGACGG+TGG | - | chr1_3:3185759-3185778 | None:intergenic | 50.0% | |
| !! | GAACTTGGCATTGGCTTCCT+AGG | + | chr1_3:3186541-3186560 | Msa0097370:CDS | 50.0% |
| GGAAAGTGACGGTGGAATTG+AGG | - | chr1_3:3185751-3185770 | None:intergenic | 50.0% | |
| CATAGAGAGGAAAGTGACGG+TGG | - | chr1_3:3185759-3185778 | None:intergenic | 50.0% | |
| !! | GAACTTGGCATTGGCTTCCT+AGG | + | chr1_3:3186541-3186560 | Msa0097370:CDS | 50.0% |
| ATTGGTGGGGTTGGGAGCAA+TGG | + | chr1_3:3186315-3186334 | Msa0097370:CDS | 55.0% | |
| ATTGGTGGGGTTGGGAGCAA+TGG | + | chr1_3:3186315-3186334 | Msa0097370:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 3185496 | 3186641 | 3185496 | ID=Msa0097370;Name=Msa0097370 |
| chr1_3 | mRNA | 3185496 | 3186641 | 3185496 | ID=Msa0097370-mRNA-1;Parent=Msa0097370;Name=Msa0097370-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|381 |
| chr1_3 | exon | 3185496 | 3186641 | 3185496 | ID=Msa0097370-mRNA-1:exon:881;Parent=Msa0097370-mRNA-1 |
| chr1_3 | CDS | 3185496 | 3186641 | 3185496 | ID=Msa0097370-mRNA-1:cds;Parent=Msa0097370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
