AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0525210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0525210 MtrunA17_Chr3g0137791 93.947 826 23 1 1 799 1 826 0.0 1614
Msa0525210 MtrunA17_Chr3g0137821 69.795 831 210 11 1 799 1 822 0.0 1178
Msa0525210 MtrunA17_Chr4g0003411 65.062 810 261 9 5 799 6 808 0.0 1081
Msa0525210 MtrunA17_Chr2g0333021 65.809 816 248 11 4 799 5 809 0.0 1075
Msa0525210 MtrunA17_Chr7g0246481 46.238 824 387 17 4 788 298 1104 0.0 712
Msa0525210 MtrunA17_Chr8g0350951 45.828 827 391 19 4 788 228 1039 0.0 707
Msa0525210 MtrunA17_Chr8g0380631 43.533 866 389 20 4 799 14 849 0.0 679
Msa0525210 MtrunA17_Chr3g0143471 43.218 870 403 20 5 799 13 866 0.0 675
Msa0525210 MtrunA17_Chr5g0398161 43.841 828 402 19 4 788 37 844 0.0 673
Msa0525210 MtrunA17_Chr5g0398171 43.590 819 411 18 4 788 37 838 0.0 665
Msa0525210 MtrunA17_Chr5g0406161 42.260 814 404 15 32 799 79 872 0.0 662
Msa0525210 MtrunA17_Chr2g0330431 43.284 804 403 18 1 799 1 756 0.0 627
Msa0525210 MtrunA17_Chr8g0341931 41.948 801 406 21 4 799 7 753 0.0 584
Msa0525210 MtrunA17_Chr1g0192401 31.727 249 133 11 484 722 733 954 1.32e-21 100
Msa0525210 MtrunA17_Chr1g0192401 31.064 235 119 9 190 411 355 559 5.33e-18 89.4
Msa0525210 MtrunA17_Chr2g0295411 32.836 201 103 6 484 679 783 956 1.82e-19 94.0
Msa0525210 MtrunA17_Chr2g0295411 28.627 255 127 10 190 422 381 602 1.03e-15 82.0
Msa0525210 MtrunA17_Chr5g0406151 50.000 68 30 1 308 375 16 79 2.07e-18 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0525210 AT3G15730.1 63.647 817 267 9 3 799 4 810 0.0 1073
Msa0525210 AT1G52570.1 62.822 815 275 11 4 799 5 810 0.0 1046
Msa0525210 AT1G52570.3 62.822 815 275 11 4 799 5 810 0.0 1046
Msa0525210 AT1G52570.2 62.822 815 275 11 4 799 5 810 0.0 1046
Msa0525210 AT5G25370.1 60.949 822 288 10 4 799 6 820 0.0 1000
Msa0525210 AT5G25370.3 60.949 822 288 10 4 799 6 820 0.0 1000
Msa0525210 AT5G25370.2 60.949 822 288 10 4 799 6 820 0.0 1000
Msa0525210 AT5G25370.4 63.588 747 260 9 58 799 6 745 0.0 960
Msa0525210 AT4G11830.2 44.604 834 399 20 1 788 30 846 0.0 704
Msa0525210 AT4G11830.1 46.332 777 373 18 39 788 55 814 0.0 699
Msa0525210 AT2G42010.1 44.689 819 404 16 4 788 270 1073 0.0 696
Msa0525210 AT4G11840.1 44.072 835 400 18 2 788 41 856 0.0 694
Msa0525210 AT2G42010.2 43.957 844 399 18 4 788 270 1098 0.0 687
Msa0525210 AT4G11850.1 44.444 828 403 17 2 788 37 848 0.0 685
Msa0525210 AT4G00240.1 44.175 824 401 16 4 788 114 917 0.0 684
Msa0525210 AT4G11840.2 43.682 831 379 17 2 788 41 826 0.0 681
Msa0525210 AT4G00240.3 45.385 780 391 14 29 788 1 765 0.0 679
Msa0525210 AT4G00240.2 45.714 770 383 14 39 788 128 882 0.0 679
Msa0525210 AT4G35790.2 43.618 807 396 13 31 799 72 857 0.0 671
Msa0525210 AT4G35790.1 43.276 818 394 14 31 799 72 868 0.0 664
Msa0525210 AT1G55180.1 41.563 806 407 21 5 799 10 762 0.0 608
Msa0525210 AT1G55180.2 42.038 785 391 20 29 799 6 740 0.0 606
Msa0525210 AT4G35790.3 42.326 619 310 8 31 613 72 679 1.77e-168 503
Msa0525210 AT4G11830.4 44.026 611 294 13 1 576 30 627 1.10e-167 499
Msa0525210 AT4G11830.3 43.760 601 290 13 1 566 30 617 1.89e-163 488
Msa0525210 AT3G05630.1 28.099 726 352 31 116 744 304 956 6.13e-44 172
Msa0525210 AT3G16785.3 35.961 203 96 7 483 679 756 930 1.00e-21 101
Msa0525210 AT3G16785.3 31.250 224 102 8 205 411 389 577 3.90e-18 90.1
Msa0525210 AT3G16785.2 35.961 203 96 7 483 679 756 930 1.00e-21 101
Msa0525210 AT3G16785.2 31.250 224 102 8 205 411 389 577 3.90e-18 90.1
Msa0525210 AT3G16785.6 35.961 203 96 7 483 679 756 930 1.02e-21 101
Msa0525210 AT3G16785.6 31.250 224 102 8 205 411 389 577 3.23e-18 90.5
Msa0525210 AT3G16785.5 35.961 203 96 7 483 679 756 930 1.02e-21 101
Msa0525210 AT3G16785.5 31.250 224 102 8 205 411 389 577 3.23e-18 90.5
Msa0525210 AT3G16785.1 35.961 203 96 7 483 679 756 930 1.02e-21 101
Msa0525210 AT3G16785.1 31.250 224 102 8 205 411 389 577 3.63e-18 90.1
Msa0525210 AT3G16785.4 35.961 203 96 7 483 679 756 930 1.04e-21 101
Msa0525210 AT3G16785.4 31.250 224 102 8 205 411 389 577 2.86e-18 90.5

Find 168 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAAATCACCTGGGAAATT+TGG 0.100944 3_4:+78740719 None:intergenic
TTAATGCAATTCAAACTTTC+TGG 0.122895 3_4:+78739248 None:intergenic
TCCCTTACCTATCATCATTT+TGG 0.178826 3_4:+78739704 None:intergenic
TTGTATTTGAACATGGATTT+TGG 0.185371 3_4:+78741462 None:intergenic
GCTTGAACTGAAGCACTTTC+AGG 0.203277 3_4:+78739954 None:intergenic
GAAAGGTTTCATTCCATTTC+GGG 0.221154 3_4:+78741662 None:intergenic
CCCATTGGAGCGACTCTAAT+TGG 0.224022 3_4:-78741583 Msa0525210:CDS
AGCAGTTATGGTTCCATTAT+TGG 0.224317 3_4:+78739121 None:intergenic
AATCCATATATTTGTCCTTT+TGG 0.234668 3_4:+78739332 None:intergenic
ATCGATGCTGGTGCTGCTTC+TGG 0.242139 3_4:-78740281 Msa0525210:CDS
GTCTATTACTGGTGGCTATA+TGG 0.261291 3_4:+78739357 None:intergenic
CATCTTGGTAAAGAGTAATT+TGG 0.273836 3_4:+78741341 None:intergenic
AAAACATTTCACAGATTATT+GGG 0.279095 3_4:-78741750 Msa0525210:intron
TGAAAGGTTTCATTCCATTT+CGG 0.287963 3_4:+78741661 None:intergenic
TTAATGTTCTTATGCTTGTT+TGG 0.298166 3_4:-78741087 Msa0525210:CDS
CCAACAGAAGCCGCTGAAAA+AGG 0.298342 3_4:-78740245 Msa0525210:CDS
CCATTATTGGTTACTTGTAT+TGG 0.306443 3_4:+78739134 None:intergenic
CCAATACAAGTAACCAATAA+TGG 0.313741 3_4:-78739134 Msa0525210:CDS
GATACTAAGGCTAAGATTCT+AGG 0.315033 3_4:-78739074 Msa0525210:CDS
TGTCAACAATTATAGTCTTC+TGG 0.324805 3_4:+78740888 None:intergenic
AAGAACATTAACACCTTCAT+TGG 0.328996 3_4:+78741099 None:intergenic
ACATTCTTTAAACAAAATAA+TGG 0.329312 3_4:-78741367 Msa0525210:CDS
GTTGTTCTTGTTGACTTGTT+TGG 0.332002 3_4:+78741154 None:intergenic
TGGAGGAAGGTACTCAGATT+TGG 0.345102 3_4:+78739049 None:intergenic
GGAACCATAACTGCTCTTCC+AGG 0.349450 3_4:-78739113 Msa0525210:CDS
CCACCAAAAGGACAAATATA+TGG 0.350161 3_4:-78739335 Msa0525210:CDS
CCCTTTATGACTTGTTCAAC+TGG 0.351702 3_4:+78741547 None:intergenic
GTTGGAAGAACTAGAATGAT+AGG 0.353330 3_4:-78741688 Msa0525210:CDS
TAATGTTCTTATGCTTGTTT+GGG 0.358547 3_4:-78741086 Msa0525210:CDS
ACTCCATCCAATGGAATATA+CGG 0.365105 3_4:+78741295 None:intergenic
GATATTAAAGTTGAGGATAT+TGG 0.365230 3_4:-78740086 Msa0525210:CDS
TCCAGTTGAACAAGTCATAA+AGG 0.366172 3_4:-78741548 Msa0525210:CDS
ATATAATCACTGTCAGGTTC+TGG 0.366661 3_4:+78739768 None:intergenic
CTTTAAGAAAGATGGCTTGA+TGG 0.371228 3_4:-78741041 Msa0525210:CDS
CAGTTCAAGCAATATTAGAT+TGG 0.371630 3_4:-78739941 Msa0525210:CDS
TTTAGTCCTTGTGACCAGTT+TGG 0.378654 3_4:+78741418 None:intergenic
GTTCCTGACTTTAAGAAAGA+TGG 0.382115 3_4:-78741049 Msa0525210:CDS
CATGGCTAGGTGGTGAGAAT+TGG 0.390572 3_4:+78739029 None:intergenic
TAAAATGACAAGTAATCTCT+TGG 0.395875 3_4:+78739846 None:intergenic
AGAGTACAATTACATGGAAA+TGG 0.400127 3_4:+78742423 None:intergenic
TTACTGGTGGCTATATGGTT+TGG 0.403321 3_4:+78739362 None:intergenic
CAAGATGCACATGTTCTAGA+TGG 0.408428 3_4:-78741325 Msa0525210:CDS
GATGATGAATACATAATCAT+TGG 0.412861 3_4:-78739455 Msa0525210:CDS
TATGAGCACCTTGGAGATAT+TGG 0.417376 3_4:-78739293 Msa0525210:CDS
GTTCATGCCAAAATGATGAT+AGG 0.420607 3_4:-78739711 Msa0525210:intron
AGAATCTTAGCCTTAGTATC+AGG 0.421693 3_4:+78739077 None:intergenic
TTACATGGAAATGGAGGTTA+AGG 0.423456 3_4:+78742432 None:intergenic
CAAGAACAACCATCACTCTT+GGG 0.423882 3_4:-78741141 Msa0525210:CDS
CGGCTTCTGTTGGATCTTGA+GGG 0.427130 3_4:+78740255 None:intergenic
AAATCCTGGAAGAGCAGTTA+TGG 0.432056 3_4:+78739109 None:intergenic
GCACTTTCAGGTATACCTTC+TGG 0.435666 3_4:+78739966 None:intergenic
ATCTTCAGTGACAACTCCTT+TGG 0.436891 3_4:+78740047 None:intergenic
GCGGCTTCTGTTGGATCTTG+AGG 0.438003 3_4:+78740254 None:intergenic
AAGCCATCTTTCTTAAAGTC+AGG 0.443766 3_4:+78741046 None:intergenic
AGATTGGCAAAGAAGGACTA+TGG 0.445851 3_4:-78739925 Msa0525210:CDS
CAATATTAGATTGGCAAAGA+AGG 0.446472 3_4:-78739932 Msa0525210:CDS
GAATGATAGGTAGCCCGAAA+TGG 0.447072 3_4:-78741675 Msa0525210:CDS
CCAATTAGAGTCGCTCCAAT+GGG 0.447711 3_4:+78741583 None:intergenic
GATATTCATTGTAAACTAGA+AGG 0.448111 3_4:-78740476 Msa0525210:CDS
GTTCCGTATATTCCATTGGA+TGG 0.448817 3_4:-78741298 Msa0525210:CDS
TTCTAGGTAGTTCATATGGT+TGG 0.454363 3_4:-78740118 Msa0525210:CDS
GATACACTACAAACTCTTGC+CGG 0.455373 3_4:-78742240 Msa0525210:CDS
CTTGTTTGGATCTCTAATCA+AGG 0.457534 3_4:+78741168 None:intergenic
GTGACAACTCCTTTGGTATG+AGG 0.458272 3_4:+78740054 None:intergenic
CTTTGAGTATATGTCCCAAT+TGG 0.459345 3_4:+78739202 None:intergenic
ACAAGAACAACCATCACTCT+TGG 0.459719 3_4:-78741142 Msa0525210:CDS
CCAGTTGAACAAGTCATAAA+GGG 0.460625 3_4:-78741547 Msa0525210:CDS
CACAACACATCCCATGCAAC+AGG 0.462297 3_4:+78740452 None:intergenic
CGAAACATGCTTGAAGGTAG+TGG 0.463688 3_4:+78740383 None:intergenic
AGAGACAGTGAGATTGCAAT+AGG 0.465168 3_4:-78739395 Msa0525210:CDS
TGAGGAACTCCTTGAAATCC+TGG 0.466088 3_4:+78741391 None:intergenic
ATATCATGCCATGGCTCTCT+AGG 0.466709 3_4:+78740494 None:intergenic
TTCTGTTCCGTATATTCCAT+TGG 0.467036 3_4:-78741302 Msa0525210:CDS
ATTGTTAGCAAGATTGAAGC+TGG 0.474341 3_4:-78740026 Msa0525210:CDS
CTAAAGAGTCCAGGATTTCA+AGG 0.476603 3_4:-78741400 Msa0525210:CDS
CATTGATCTTTGATTTATGT+TGG 0.476676 3_4:+78739427 None:intergenic
TCAGGAAAACATTCAAATCC+TGG 0.477356 3_4:+78739095 None:intergenic
GTTGAAGCCCTTCAAAGAAA+AGG 0.478206 3_4:-78739882 Msa0525210:CDS
CAGTTTCTCTCCACATGGCT+AGG 0.479672 3_4:+78739016 None:intergenic
TCAGGTTCTGGTGCCTCTGT+AGG 0.480853 3_4:+78739780 None:intergenic
AACTGGTTGGTCTGTTTACA+CGG 0.480935 3_4:-78741197 Msa0525210:CDS
CATCTAGAACATGTGCATCT+TGG 0.481308 3_4:+78741326 None:intergenic
ATGGATTTAGACGTGCACTA+TGG 0.481715 3_4:-78739316 Msa0525210:CDS
CATTTCACAGATTATTGGGA+TGG 0.486910 3_4:-78741746 Msa0525210:intron
TCCAATTAGAGTCGCTCCAA+TGG 0.488605 3_4:+78741582 None:intergenic
GATTTAGACAAAGCAAGAGT+TGG 0.492961 3_4:-78741706 Msa0525210:CDS
GGCTAGGTGGTGAGAATTGG+AGG 0.496635 3_4:+78739032 None:intergenic
AAAATGACAAGTAATCTCTT+GGG 0.497438 3_4:+78739847 None:intergenic
TATTCACGAAACATGCTTGA+AGG 0.498456 3_4:+78740377 None:intergenic
GTATGTGCCGGGAAAATGTT+GGG 0.500103 3_4:-78741266 Msa0525210:CDS
TTGTTTAGATCGATCGATGC+TGG 0.502376 3_4:-78740293 Msa0525210:CDS
GATGGAAGAAGTATAGTTCA+AGG 0.503461 3_4:-78740941 Msa0525210:CDS
GTGGGATTGATCTTTGTGAT+GGG 0.506802 3_4:-78740811 Msa0525210:CDS
CATGGAAATGGAGGTTAAGG+AGG 0.508674 3_4:+78742435 None:intergenic
AGGGCAACATAGTGAATACA+TGG 0.511698 3_4:-78741528 Msa0525210:CDS
GCTCTAATATAATCACTGTC+AGG 0.514466 3_4:+78739762 None:intergenic
GCTTGATGTGACTATATATG+AGG 0.515858 3_4:-78742265 Msa0525210:CDS
TTTGACAGTGAATATAATGT+TGG 0.517344 3_4:+78741615 None:intergenic
TGGAGTAGAACGGTATGTGC+CGG 0.519752 3_4:-78741278 Msa0525210:CDS
CAACATAAATCAAAGATCAA+TGG 0.522850 3_4:-78739426 Msa0525210:CDS
AACTAGAAGGACCTGTTGCA+TGG 0.522952 3_4:-78740463 Msa0525210:CDS
GGAGTAGAACGGTATGTGCC+GGG 0.525843 3_4:-78741277 Msa0525210:CDS
GGTGGGATTGATCTTTGTGA+TGG 0.527896 3_4:-78740812 Msa0525210:CDS
TTTCATCAACCAAATTTCCC+AGG 0.530381 3_4:-78740728 Msa0525210:intron
GGTATACCTTCTGGCCACAT+TGG 0.533593 3_4:+78739975 None:intergenic
CGGCAAATCAAAACAACACA+TGG 0.534970 3_4:-78740325 Msa0525210:CDS
CTTAAGAAGAAAGCCAATGA+AGG 0.539673 3_4:-78741112 Msa0525210:CDS
TCTTACCCTCTCGGTTTCCA+AGG 0.540213 3_4:+78739820 None:intergenic
CAAAGATGGGAAAAGCAAGT+TGG 0.540379 3_4:-78740419 Msa0525210:CDS
ACTATACTTCTTCCATCACC+AGG 0.545798 3_4:+78740947 None:intergenic
GCAGAGATCGAAATTGCATC+CGG 0.546902 3_4:+78742221 None:intergenic
CTTCCATCACCAGGGTTACG+TGG 0.548889 3_4:+78740956 None:intergenic
TTGATAGAATTAATCAGCAA+TGG 0.551114 3_4:+78738969 None:intergenic
ATTTCACAGATTATTGGGAT+GGG 0.555183 3_4:-78741745 Msa0525210:intron
ACTAGAAGGACCTGTTGCAT+GGG 0.560087 3_4:-78740462 Msa0525210:CDS
GTCATGTTGCACTTACTACA+CGG 0.562058 3_4:-78742291 Msa0525210:CDS
GTGGATCATCGTCCAATACA+AGG 0.562412 3_4:-78741490 Msa0525210:CDS
TTCATATGGTTGGAAATCAT+CGG 0.572489 3_4:-78740108 Msa0525210:CDS
ACCAGTAATAGACCACCAAA+AGG 0.573701 3_4:-78739347 Msa0525210:CDS
ATGGGTTAATATATTAGATG+TGG 0.574499 3_4:-78741509 Msa0525210:CDS
GTCATTCCAATGTGGCCAGA+AGG 0.574690 3_4:-78739981 Msa0525210:CDS
TACCGTTCTACTCCATCCAA+TGG 0.576822 3_4:+78741286 None:intergenic
ATGGAAATGGAGGTTAAGGA+GGG 0.580560 3_4:+78742436 None:intergenic
TGCTTTGCACCTCATACCAA+AGG 0.582854 3_4:-78740063 Msa0525210:CDS
TGACAAGTAATCTCTTGGGT+TGG 0.586202 3_4:+78739851 None:intergenic
GTCAAACAAGATAACCCCAT+TGG 0.587028 3_4:-78741598 Msa0525210:CDS
ATCATCGGATATTAAAGTTG+AGG 0.587336 3_4:-78740093 Msa0525210:CDS
AAGAAGCTCCCCAAGAGTGA+TGG 0.594868 3_4:+78741132 None:intergenic
TCACAAGGACTAAAGAGTCC+AGG 0.595640 3_4:-78741409 Msa0525210:CDS
TCGTCGAATAGCGTTTATGT+AGG 0.595975 3_4:+78740175 None:intergenic
CAATTTCGATCTCTGCAACA+AGG 0.597917 3_4:-78742214 Msa0525210:intron
TGAAAACAAAGGATGTTCCA+TGG 0.602384 3_4:+78740778 None:intergenic
TATTGCCTTGGAAACCGAGA+GGG 0.604275 3_4:-78739825 Msa0525210:CDS
TGCCCACGTAACCCTGGTGA+TGG 0.604924 3_4:-78740959 Msa0525210:CDS
GGTATGTGCCGGGAAAATGT+TGG 0.606197 3_4:-78741267 Msa0525210:CDS
TTTCTCTCCACATGGCTAGG+TGG 0.613613 3_4:+78739019 None:intergenic
GTGAGAATTGTATTTGAACA+TGG 0.616949 3_4:+78741455 None:intergenic
TTACAATGAATATCATGCCA+TGG 0.618761 3_4:+78740485 None:intergenic
ACATTCAGTTTCTCTCCACA+TGG 0.623036 3_4:+78739011 None:intergenic
ATGTGCAGAGTAAATGTGAA+AGG 0.624116 3_4:+78741645 None:intergenic
ATAAATCAAAGATCAATGGA+TGG 0.626562 3_4:-78739422 Msa0525210:CDS
TTCCATCACCAGGGTTACGT+GGG 0.629779 3_4:+78740957 None:intergenic
GTACAATTACATGGAAATGG+AGG 0.633738 3_4:+78742426 None:intergenic
AAGAACAACCATCACTCTTG+GGG 0.634263 3_4:-78741140 Msa0525210:CDS
GTATTCAAAGTTGAAAACAA+AGG 0.635550 3_4:+78740767 None:intergenic
GCACTATGGTATGAGCACCT+TGG 0.638088 3_4:-78739302 Msa0525210:CDS
AATGATCCAAACTGGTCACA+AGG 0.638447 3_4:-78741424 Msa0525210:CDS
CAATTGGGACATATACTCAA+AGG 0.640794 3_4:-78739201 Msa0525210:CDS
AGGTGGTGAGAATTGGAGGA+AGG 0.643329 3_4:+78739036 None:intergenic
GAATGAATATACTCCTACAG+AGG 0.643986 3_4:-78739793 Msa0525210:CDS
TCATGTTGCACTTACTACAC+GGG 0.647685 3_4:-78742290 Msa0525210:CDS
TTGTATCACCAATATCTCCA+AGG 0.650254 3_4:+78739285 None:intergenic
CTTGTATTGGATAATGCATG+AGG 0.661800 3_4:+78739147 None:intergenic
TCGTGTATCGAATGTTGCCA+CGG 0.661868 3_4:-78740345 Msa0525210:CDS
AAAGATTCCTGCTTAAAACA+AGG 0.666302 3_4:+78738940 None:intergenic
ATTCTCACCACCTAGCCATG+TGG 0.671398 3_4:-78739026 Msa0525210:exon
TTCCATTGGATGGAGTAGAA+CGG 0.671871 3_4:-78741288 Msa0525210:CDS
GGTGCTTCTATTAACAAAGG+TGG 0.672280 3_4:-78740518 Msa0525210:CDS
ACAGGTGCTTCTATTAACAA+AGG 0.672622 3_4:-78740521 Msa0525210:intron
AAGTTGCTAGTTCTGCACAA+TGG 0.673752 3_4:-78740862 Msa0525210:CDS
TGATGGGAGATATGATACCA+TGG 0.695563 3_4:-78740795 Msa0525210:CDS
CTATACTTCTTCCATCACCA+GGG 0.698859 3_4:+78740948 None:intergenic
AAGGTGGTCCTAGAGAGCCA+TGG 0.705923 3_4:-78740502 Msa0525210:CDS
GGGCAACATAGTGAATACAT+GGG 0.707757 3_4:-78741527 Msa0525210:CDS
CAATTAGAGTCGCTCCAATG+GGG 0.713373 3_4:+78741584 None:intergenic
TTATTGCCTTGGAAACCGAG+AGG 0.718876 3_4:-78739826 Msa0525210:CDS
TGTACATTGTCATTCCAATG+TGG 0.747438 3_4:-78739989 Msa0525210:CDS
GATCATCGTCCAATACAAGG+CGG 0.779275 3_4:-78741487 Msa0525210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATTCTTTAAACAAAATAA+TGG - chr3_4:78739965-78739984 Msa0525210:CDS 15.0%
!! AAAATATAAAATATTCCAAC+AGG - chr3_4:78740793-78740812 Msa0525210:CDS 15.0%
!! AATAAATGTAAAATAGAAAC+AGG + chr3_4:78741670-78741689 None:intergenic 15.0%
!!! TAATAAATTTTCTTTTGCAA+AGG + chr3_4:78741811-78741830 None:intergenic 15.0%
!! CAATCTACTTAAAATGAAAT+TGG + chr3_4:78739181-78739200 None:intergenic 20.0%
!! TGACAAATTCATTAGAAAAA+AGG + chr3_4:78739248-78739267 None:intergenic 20.0%
!! AAAAACATTTCACAGATTAT+TGG - chr3_4:78739581-78739600 Msa0525210:intron 20.0%
!! AAAACATTTCACAGATTATT+GGG - chr3_4:78739582-78739601 Msa0525210:intron 20.0%
!!! ATTGAAAATCAGTATTTTCT+AGG - chr3_4:78741198-78741217 Msa0525210:CDS 20.0%
!!! TTGAACTTCAAATTTTATAG+AGG + chr3_4:78742440-78742459 None:intergenic 20.0%
!! TAAGTAAGAGTACAATTACA+TGG + chr3_4:78738918-78738937 None:intergenic 25.0%
! CTTTCAAATTTCGTAAACAA+GGG - chr3_4:78739351-78739370 Msa0525210:CDS 25.0%
! TACAGATTATATAGTCAACA+AGG + chr3_4:78739482-78739501 None:intergenic 25.0%
! TAGGTGTTAGAATGTATAAA+GGG + chr3_4:78739552-78739571 None:intergenic 25.0%
! TTAGGTGTTAGAATGTATAA+AGG + chr3_4:78739553-78739572 None:intergenic 25.0%
!!! AAATGTTTTTACATGTCGTT+AGG + chr3_4:78739571-78739590 None:intergenic 25.0%
! TTTGACAGTGAATATAATGT+TGG + chr3_4:78739720-78739739 None:intergenic 25.0%
!! ATGGGTTAATATATTAGATG+TGG - chr3_4:78739823-78739842 Msa0525210:CDS 25.0%
!! TTGTATTTGAACATGGATTT+TGG + chr3_4:78739873-78739892 None:intergenic 25.0%
! ATGTTAAAAATGATCCAAAC+TGG - chr3_4:78739900-78739919 Msa0525210:CDS 25.0%
!!! TTTTGTTTAAAGAATGTGTG+AGG + chr3_4:78739962-78739981 None:intergenic 25.0%
!!! AAGCATTTTATTTGCATAAC+TGG - chr3_4:78740118-78740137 Msa0525210:CDS 25.0%
!!! ATTTTATTTGCATAACTGGT+TGG - chr3_4:78740122-78740141 Msa0525210:CDS 25.0%
! TTAATGTTCTTATGCTTGTT+TGG - chr3_4:78740245-78740264 Msa0525210:CDS 25.0%
! TAATGTTCTTATGCTTGTTT+GGG - chr3_4:78740246-78740265 Msa0525210:CDS 25.0%
! GTATTCAAAGTTGAAAACAA+AGG + chr3_4:78740568-78740587 None:intergenic 25.0%
! AGGACTTAATTATGAAATGT+TGG - chr3_4:78740750-78740769 Msa0525210:CDS 25.0%
! GATATTCATTGTAAACTAGA+AGG - chr3_4:78740856-78740875 Msa0525210:CDS 25.0%
!! TATTTTCTAGGTAGTTCATA+TGG - chr3_4:78741210-78741229 Msa0525210:CDS 25.0%
! GATATTAAAGTTGAGGATAT+TGG - chr3_4:78741246-78741265 Msa0525210:CDS 25.0%
! AAAATGACAAGTAATCTCTT+GGG + chr3_4:78741488-78741507 None:intergenic 25.0%
! TAAAATGACAAGTAATCTCT+TGG + chr3_4:78741489-78741508 None:intergenic 25.0%
! GAAACAGGTAATATATATGT+TGG + chr3_4:78741655-78741674 None:intergenic 25.0%
!!! ATTGGAAAGTGTCAATTTAA+TGG + chr3_4:78741773-78741792 None:intergenic 25.0%
! GATGATGAATACATAATCAT+TGG - chr3_4:78741877-78741896 Msa0525210:intron 25.0%
!! CATTGATCTTTGATTTATGT+TGG + chr3_4:78741908-78741927 None:intergenic 25.0%
! CAACATAAATCAAAGATCAA+TGG - chr3_4:78741906-78741925 Msa0525210:intron 25.0%
! ATAAATCAAAGATCAATGGA+TGG - chr3_4:78741910-78741929 Msa0525210:intron 25.0%
!! AATCCATATATTTGTCCTTT+TGG + chr3_4:78742003-78742022 None:intergenic 25.0%
! TTAATGCAATTCAAACTTTC+TGG + chr3_4:78742087-78742106 None:intergenic 25.0%
! TTGATAGAATTAATCAGCAA+TGG + chr3_4:78742366-78742385 None:intergenic 25.0%
!! ACTTCAAATTTTATAGAGGT+AGG + chr3_4:78742436-78742455 None:intergenic 25.0%
AGAGTACAATTACATGGAAA+TGG + chr3_4:78738912-78738931 None:intergenic 30.0%
GCTTTCAAATTTCGTAAACA+AGG - chr3_4:78739350-78739369 Msa0525210:CDS 30.0%
AATATGTGAAGATATACCTC+TGG + chr3_4:78739450-78739469 None:intergenic 30.0%
ATTTCACAGATTATTGGGAT+GGG - chr3_4:78739587-78739606 Msa0525210:intron 30.0%
TGAAAGGTTTCATTCCATTT+CGG + chr3_4:78739674-78739693 None:intergenic 30.0%
GTGAGAATTGTATTTGAACA+TGG + chr3_4:78739880-78739899 None:intergenic 30.0%
CATCTTGGTAAAGAGTAATT+TGG + chr3_4:78739994-78740013 None:intergenic 30.0%
AAGAACATTAACACCTTCAT+TGG + chr3_4:78740236-78740255 None:intergenic 30.0%
TGTCAACAATTATAGTCTTC+TGG + chr3_4:78740447-78740466 None:intergenic 30.0%
!! AGAACAATCACAAGTTTTGT+TGG - chr3_4:78740499-78740518 Msa0525210:CDS 30.0%
GCATGCATATTTACAATCTT+AGG - chr3_4:78740730-78740749 Msa0525210:CDS 30.0%
TTACAATGAATATCATGCCA+TGG + chr3_4:78740850-78740869 None:intergenic 30.0%
TTCATATGGTTGGAAATCAT+CGG - chr3_4:78741224-78741243 Msa0525210:CDS 30.0%
ATCATCGGATATTAAAGTTG+AGG - chr3_4:78741239-78741258 Msa0525210:CDS 30.0%
CAGTTCAAGCAATATTAGAT+TGG - chr3_4:78741391-78741410 Msa0525210:CDS 30.0%
CAATATTAGATTGGCAAAGA+AGG - chr3_4:78741400-78741419 Msa0525210:CDS 30.0%
! TCTGATTCCTTTTCTTTGAA+GGG + chr3_4:78741460-78741479 None:intergenic 30.0%
!!! TACTTGTCATTTTATTGCCT+TGG - chr3_4:78741495-78741514 Msa0525210:CDS 30.0%
AGGTGTATGTGCTAATTAAT+TGG + chr3_4:78741791-78741810 None:intergenic 30.0%
! CCATTATTGGTTACTTGTAT+TGG + chr3_4:78742201-78742220 None:intergenic 30.0%
CCAATACAAGTAACCAATAA+TGG - chr3_4:78742198-78742217 Msa0525210:intron 30.0%
! TGAATGTTTTCCTGATACTA+AGG - chr3_4:78742245-78742264 Msa0525210:CDS 30.0%
AAAGATTCCTGCTTAAAACA+AGG + chr3_4:78742395-78742414 None:intergenic 30.0%
TTACATGGAAATGGAGGTTA+AGG + chr3_4:78738903-78738922 None:intergenic 35.0%
GTACAATTACATGGAAATGG+AGG + chr3_4:78738909-78738928 None:intergenic 35.0%
!! TGTTTTTATTGCACACAGCA+AGG - chr3_4:78738991-78739010 Msa0525210:three_prime_UTR 35.0%
! GTTTTTATTGCACACAGCAA+GGG - chr3_4:78738992-78739011 Msa0525210:three_prime_UTR 35.0%
GCTTGATGTGACTATATATG+AGG - chr3_4:78739067-78739086 Msa0525210:CDS 35.0%
!! CTCTGTGTATTTGCTGATTT+CGG - chr3_4:78739328-78739347 Msa0525210:CDS 35.0%
CATTTCACAGATTATTGGGA+TGG - chr3_4:78739586-78739605 Msa0525210:intron 35.0%
GATTTAGACAAAGCAAGAGT+TGG - chr3_4:78739626-78739645 Msa0525210:intron 35.0%
GTTGGAAGAACTAGAATGAT+AGG - chr3_4:78739644-78739663 Msa0525210:intron 35.0%
GAAAGGTTTCATTCCATTTC+GGG + chr3_4:78739673-78739692 None:intergenic 35.0%
ATGTGCAGAGTAAATGTGAA+AGG + chr3_4:78739690-78739709 None:intergenic 35.0%
TCCAGTTGAACAAGTCATAA+AGG - chr3_4:78739784-78739803 Msa0525210:CDS 35.0%
CCAGTTGAACAAGTCATAAA+GGG - chr3_4:78739785-78739804 Msa0525210:CDS 35.0%
TTCTGTTCCGTATATTCCAT+TGG - chr3_4:78740030-78740049 Msa0525210:CDS 35.0%
ACTCCATCCAATGGAATATA+CGG + chr3_4:78740040-78740059 None:intergenic 35.0%
CTTGTTTGGATCTCTAATCA+AGG + chr3_4:78740167-78740186 None:intergenic 35.0%
!! GTTGTTCTTGTTGACTTGTT+TGG + chr3_4:78740181-78740200 None:intergenic 35.0%
CTTAAGAAGAAAGCCAATGA+AGG - chr3_4:78740220-78740239 Msa0525210:CDS 35.0%
! GTTCCTGACTTTAAGAAAGA+TGG - chr3_4:78740283-78740302 Msa0525210:CDS 35.0%
AAGCCATCTTTCTTAAAGTC+AGG + chr3_4:78740289-78740308 None:intergenic 35.0%
! CTTTAAGAAAGATGGCTTGA+TGG - chr3_4:78740291-78740310 Msa0525210:CDS 35.0%
! GATGGAAGAAGTATAGTTCA+AGG - chr3_4:78740391-78740410 Msa0525210:CDS 35.0%
!!! ACAATCACAAGTTTTGTTGG+TGG - chr3_4:78740502-78740521 Msa0525210:CDS 35.0%
!!! CAATCACAAGTTTTGTTGGT+GGG - chr3_4:78740503-78740522 Msa0525210:CDS 35.0%
TGAAAACAAAGGATGTTCCA+TGG + chr3_4:78740557-78740576 None:intergenic 35.0%
TTTCATCAACCAAATTTCCC+AGG - chr3_4:78740604-78740623 Msa0525210:intron 35.0%
AACTAGTTCCAAAATCACCT+GGG + chr3_4:78740624-78740643 None:intergenic 35.0%
AAACTAGTTCCAAAATCACC+TGG + chr3_4:78740625-78740644 None:intergenic 35.0%
!! TTGTTAATAGAAGCACCTGT+TGG + chr3_4:78740811-78740830 None:intergenic 35.0%
ACAGGTGCTTCTATTAACAA+AGG - chr3_4:78740811-78740830 Msa0525210:CDS 35.0%
! TGTGCAATTTTGAGCAAAGA+TGG - chr3_4:78740899-78740918 Msa0525210:CDS 35.0%
! GTGCAATTTTGAGCAAAGAT+GGG - chr3_4:78740900-78740919 Msa0525210:CDS 35.0%
TATTCACGAAACATGCTTGA+AGG + chr3_4:78740958-78740977 None:intergenic 35.0%
!!! AGTAACAAGACCTTTTTCAG+CGG + chr3_4:78741100-78741119 None:intergenic 35.0%
TTCTAGGTAGTTCATATGGT+TGG - chr3_4:78741214-78741233 Msa0525210:CDS 35.0%
ATTGTTAGCAAGATTGAAGC+TGG - chr3_4:78741306-78741325 Msa0525210:CDS 35.0%
TGTACATTGTCATTCCAATG+TGG - chr3_4:78741343-78741362 Msa0525210:CDS 35.0%
! CTCTGATTCCTTTTCTTTGA+AGG + chr3_4:78741461-78741480 None:intergenic 35.0%
! CATTCATTTTCTTACCCTCT+CGG + chr3_4:78741524-78741543 None:intergenic 35.0%
GAATGAATATACTCCTACAG+AGG - chr3_4:78741539-78741558 Msa0525210:CDS 35.0%
ATATAATCACTGTCAGGTTC+TGG + chr3_4:78741567-78741586 None:intergenic 35.0%
GCTCTAATATAATCACTGTC+AGG + chr3_4:78741573-78741592 None:intergenic 35.0%
GTTCATGCCAAAATGATGAT+AGG - chr3_4:78741621-78741640 Msa0525210:CDS 35.0%
TGCCAAAATGATGATAGGTA+AGG - chr3_4:78741626-78741645 Msa0525210:CDS 35.0%
GCCAAAATGATGATAGGTAA+GGG - chr3_4:78741627-78741646 Msa0525210:CDS 35.0%
! TCCCTTACCTATCATCATTT+TGG + chr3_4:78741631-78741650 None:intergenic 35.0%
AACGCAGTTCAAATATCTTC+GGG + chr3_4:78741723-78741742 None:intergenic 35.0%
GAACGCAGTTCAAATATCTT+CGG + chr3_4:78741724-78741743 None:intergenic 35.0%
TATTTGAACTGCGTTCTTTG+AGG - chr3_4:78741728-78741747 Msa0525210:CDS 35.0%
! CCATATATTTGTCCTTTTGG+TGG + chr3_4:78742000-78742019 None:intergenic 35.0%
CCACCAAAAGGACAAATATA+TGG - chr3_4:78741997-78742016 Msa0525210:intron 35.0%
TTGTATCACCAATATCTCCA+AGG + chr3_4:78742050-78742069 None:intergenic 35.0%
CTTTGAGTATATGTCCCAAT+TGG + chr3_4:78742133-78742152 None:intergenic 35.0%
CAATTGGGACATATACTCAA+AGG - chr3_4:78742131-78742150 Msa0525210:intron 35.0%
CTTGTATTGGATAATGCATG+AGG + chr3_4:78742188-78742207 None:intergenic 35.0%
AGCAGTTATGGTTCCATTAT+TGG + chr3_4:78742214-78742233 None:intergenic 35.0%
TCAGGAAAACATTCAAATCC+TGG + chr3_4:78742240-78742259 None:intergenic 35.0%
!! AGAATCTTAGCCTTAGTATC+AGG + chr3_4:78742258-78742277 None:intergenic 35.0%
GATACTAAGGCTAAGATTCT+AGG - chr3_4:78742258-78742277 Msa0525210:CDS 35.0%
!!! AGTAACACCTTGTTTTAAGC+AGG - chr3_4:78742385-78742404 Msa0525210:intron 35.0%
ATGGAAATGGAGGTTAAGGA+GGG + chr3_4:78738899-78738918 None:intergenic 40.0%
GTCATGTTGCACTTACTACA+CGG - chr3_4:78739041-78739060 Msa0525210:CDS 40.0%
TCATGTTGCACTTACTACAC+GGG - chr3_4:78739042-78739061 Msa0525210:CDS 40.0%
GATACACTACAAACTCTTGC+CGG - chr3_4:78739092-78739111 Msa0525210:CDS 40.0%
CAATTTCGATCTCTGCAACA+AGG - chr3_4:78739118-78739137 Msa0525210:CDS 40.0%
CGAAATCAGCAAATACACAG+AGG + chr3_4:78739330-78739349 None:intergenic 40.0%
GTCAAACAAGATAACCCCAT+TGG - chr3_4:78739734-78739753 Msa0525210:CDS 40.0%
!! CCCTTTATGACTTGTTCAAC+TGG + chr3_4:78739788-78739807 None:intergenic 40.0%
AGGGCAACATAGTGAATACA+TGG - chr3_4:78739804-78739823 Msa0525210:CDS 40.0%
GGGCAACATAGTGAATACAT+GGG - chr3_4:78739805-78739824 Msa0525210:CDS 40.0%
!!! ATTTTGGAACCGCCTTGTAT+TGG + chr3_4:78739857-78739876 None:intergenic 40.0%
AATGATCCAAACTGGTCACA+AGG - chr3_4:78739908-78739927 Msa0525210:CDS 40.0%
TTTAGTCCTTGTGACCAGTT+TGG + chr3_4:78739917-78739936 None:intergenic 40.0%
CTAAAGAGTCCAGGATTTCA+AGG - chr3_4:78739932-78739951 Msa0525210:CDS 40.0%
! CATCTAGAACATGTGCATCT+TGG + chr3_4:78740009-78740028 None:intergenic 40.0%
! CAAGATGCACATGTTCTAGA+TGG - chr3_4:78740007-78740026 Msa0525210:CDS 40.0%
GTTCCGTATATTCCATTGGA+TGG - chr3_4:78740034-78740053 Msa0525210:CDS 40.0%
TTCCATTGGATGGAGTAGAA+CGG - chr3_4:78740044-78740063 Msa0525210:CDS 40.0%
! GTATCTTCCCAACATTTTCC+CGG + chr3_4:78740076-78740095 None:intergenic 40.0%
!! AACTGGTTGGTCTGTTTACA+CGG - chr3_4:78740135-78740154 Msa0525210:CDS 40.0%
ACAAGAACAACCATCACTCT+TGG - chr3_4:78740190-78740209 Msa0525210:CDS 40.0%
CAAGAACAACCATCACTCTT+GGG - chr3_4:78740191-78740210 Msa0525210:CDS 40.0%
AAGAACAACCATCACTCTTG+GGG - chr3_4:78740192-78740211 Msa0525210:CDS 40.0%
CTATACTTCTTCCATCACCA+GGG + chr3_4:78740387-78740406 None:intergenic 40.0%
ACTATACTTCTTCCATCACC+AGG + chr3_4:78740388-78740407 None:intergenic 40.0%
!! AAGTTGCTAGTTCTGCACAA+TGG - chr3_4:78740470-78740489 Msa0525210:CDS 40.0%
GTGGGATTGATCTTTGTGAT+GGG - chr3_4:78740521-78740540 Msa0525210:intron 40.0%
TGATGGGAGATATGATACCA+TGG - chr3_4:78740537-78740556 Msa0525210:intron 40.0%
CCAAAATCACCTGGGAAATT+TGG + chr3_4:78740616-78740635 None:intergenic 40.0%
! CCAAATTTCCCAGGTGATTT+TGG - chr3_4:78740613-78740632 Msa0525210:intron 40.0%
GGTGCTTCTATTAACAAAGG+TGG - chr3_4:78740814-78740833 Msa0525210:CDS 40.0%
CAAAGATGGGAAAAGCAAGT+TGG - chr3_4:78740913-78740932 Msa0525210:CDS 40.0%
!!! TGTGTTGTTTTGATTTGCCG+TGG + chr3_4:78741007-78741026 None:intergenic 40.0%
CGGCAAATCAAAACAACACA+TGG - chr3_4:78741007-78741026 Msa0525210:CDS 40.0%
TTGTTTAGATCGATCGATGC+TGG - chr3_4:78741039-78741058 Msa0525210:CDS 40.0%
!! GCTGAAAAAGGTCTTGTTAC+TGG - chr3_4:78741099-78741118 Msa0525210:CDS 40.0%
TCGTCGAATAGCGTTTATGT+AGG + chr3_4:78741160-78741179 None:intergenic 40.0%
ATCTTCAGTGACAACTCCTT+TGG + chr3_4:78741288-78741307 None:intergenic 40.0%
AGATTGGCAAAGAAGGACTA+TGG - chr3_4:78741407-78741426 Msa0525210:CDS 40.0%
GTTGAAGCCCTTCAAAGAAA+AGG - chr3_4:78741450-78741469 Msa0525210:CDS 40.0%
TGACAAGTAATCTCTTGGGT+TGG + chr3_4:78741484-78741503 None:intergenic 40.0%
AGAGACAGTGAGATTGCAAT+AGG - chr3_4:78741937-78741956 Msa0525210:intron 40.0%
TTACTGGTGGCTATATGGTT+TGG + chr3_4:78741973-78741992 None:intergenic 40.0%
GTCTATTACTGGTGGCTATA+TGG + chr3_4:78741978-78741997 None:intergenic 40.0%
!! TTTTGGTGGTCTATTACTGG+TGG + chr3_4:78741986-78742005 None:intergenic 40.0%
ACCAGTAATAGACCACCAAA+AGG - chr3_4:78741985-78742004 Msa0525210:intron 40.0%
!! TCCTTTTGGTGGTCTATTAC+TGG + chr3_4:78741989-78742008 None:intergenic 40.0%
ATGGATTTAGACGTGCACTA+TGG - chr3_4:78742016-78742035 Msa0525210:intron 40.0%
TATGAGCACCTTGGAGATAT+TGG - chr3_4:78742039-78742058 Msa0525210:intron 40.0%
! ATCGTTTTGCTGAGACCAAT+TGG - chr3_4:78742115-78742134 Msa0525210:intron 40.0%
! TCGTTTTGCTGAGACCAATT+GGG - chr3_4:78742116-78742135 Msa0525210:intron 40.0%
AAATCCTGGAAGAGCAGTTA+TGG + chr3_4:78742226-78742245 None:intergenic 40.0%
ACATTCAGTTTCTCTCCACA+TGG + chr3_4:78742324-78742343 None:intergenic 40.0%
CATGGAAATGGAGGTTAAGG+AGG + chr3_4:78738900-78738919 None:intergenic 45.0%
GCAGAGATCGAAATTGCATC+CGG + chr3_4:78739114-78739133 None:intergenic 45.0%
! GATATACCTCTGGCTTGCAT+TGG + chr3_4:78739440-78739459 None:intergenic 45.0%
GAATGATAGGTAGCCCGAAA+TGG - chr3_4:78739657-78739676 Msa0525210:intron 45.0%
CAATTAGAGTCGCTCCAATG+GGG + chr3_4:78739751-78739770 None:intergenic 45.0%
CCAATTAGAGTCGCTCCAAT+GGG + chr3_4:78739752-78739771 None:intergenic 45.0%
TCCAATTAGAGTCGCTCCAA+TGG + chr3_4:78739753-78739772 None:intergenic 45.0%
GTGGATCATCGTCCAATACA+AGG - chr3_4:78739842-78739861 Msa0525210:CDS 45.0%
GATCATCGTCCAATACAAGG+CGG - chr3_4:78739845-78739864 Msa0525210:CDS 45.0%
TCACAAGGACTAAAGAGTCC+AGG - chr3_4:78739923-78739942 Msa0525210:CDS 45.0%
TGAGGAACTCCTTGAAATCC+TGG + chr3_4:78739944-78739963 None:intergenic 45.0%
TACCGTTCTACTCCATCCAA+TGG + chr3_4:78740049-78740068 None:intergenic 45.0%
GTATGTGCCGGGAAAATGTT+GGG - chr3_4:78740066-78740085 Msa0525210:CDS 45.0%
GGTGGGATTGATCTTTGTGA+TGG - chr3_4:78740520-78740539 Msa0525210:CDS 45.0%
ATATCATGCCATGGCTCTCT+AGG + chr3_4:78740841-78740860 None:intergenic 45.0%
AACTAGAAGGACCTGTTGCA+TGG - chr3_4:78740869-78740888 Msa0525210:CDS 45.0%
ACTAGAAGGACCTGTTGCAT+GGG - chr3_4:78740870-78740889 Msa0525210:CDS 45.0%
CGAAACATGCTTGAAGGTAG+TGG + chr3_4:78740952-78740971 None:intergenic 45.0%
TCGTGTATCGAATGTTGCCA+CGG - chr3_4:78740987-78741006 Msa0525210:CDS 45.0%
TGCTTTGCACCTCATACCAA+AGG - chr3_4:78741269-78741288 Msa0525210:CDS 45.0%
GTGACAACTCCTTTGGTATG+AGG + chr3_4:78741281-78741300 None:intergenic 45.0%
! GCACTTTCAGGTATACCTTC+TGG + chr3_4:78741369-78741388 None:intergenic 45.0%
! GCTTGAACTGAAGCACTTTC+AGG + chr3_4:78741381-78741400 None:intergenic 45.0%
TTATTGCCTTGGAAACCGAG+AGG - chr3_4:78741506-78741525 Msa0525210:CDS 45.0%
TATTGCCTTGGAAACCGAGA+GGG - chr3_4:78741507-78741526 Msa0525210:CDS 45.0%
!! TGGAGGAAGGTACTCAGATT+TGG + chr3_4:78742286-78742305 None:intergenic 45.0%
AAGGGAACATGCACAAGCGT+GGG - chr3_4:78739369-78739388 Msa0525210:CDS 50.0%
TCAATGCCAATGCAAGCCAG+AGG - chr3_4:78739431-78739450 Msa0525210:CDS 50.0%
CCCATTGGAGCGACTCTAAT+TGG - chr3_4:78739749-78739768 Msa0525210:CDS 50.0%
TGGAGTAGAACGGTATGTGC+CGG - chr3_4:78740054-78740073 Msa0525210:CDS 50.0%
GGTATGTGCCGGGAAAATGT+TGG - chr3_4:78740065-78740084 Msa0525210:CDS 50.0%
AAGAAGCTCCCCAAGAGTGA+TGG + chr3_4:78740203-78740222 None:intergenic 50.0%
TTCCATCACCAGGGTTACGT+GGG + chr3_4:78740378-78740397 None:intergenic 50.0%
CACAACACATCCCATGCAAC+AGG + chr3_4:78740883-78740902 None:intergenic 50.0%
CGGCTTCTGTTGGATCTTGA+GGG + chr3_4:78741080-78741099 None:intergenic 50.0%
!!! CCTTTTTCAGCGGCTTCTGT+TGG + chr3_4:78741090-78741109 None:intergenic 50.0%
CCAACAGAAGCCGCTGAAAA+AGG - chr3_4:78741087-78741106 Msa0525210:CDS 50.0%
GTCATTCCAATGTGGCCAGA+AGG - chr3_4:78741351-78741370 Msa0525210:CDS 50.0%
GGTATACCTTCTGGCCACAT+TGG + chr3_4:78741360-78741379 None:intergenic 50.0%
TCTTACCCTCTCGGTTTCCA+AGG + chr3_4:78741515-78741534 None:intergenic 50.0%
GCACTATGGTATGAGCACCT+TGG - chr3_4:78742030-78742049 Msa0525210:intron 50.0%
GGAACCATAACTGCTCTTCC+AGG - chr3_4:78742219-78742238 Msa0525210:CDS 50.0%
AGGTGGTGAGAATTGGAGGA+AGG + chr3_4:78742299-78742318 None:intergenic 50.0%
CATGGCTAGGTGGTGAGAAT+TGG + chr3_4:78742306-78742325 None:intergenic 50.0%
ATTCTCACCACCTAGCCATG+TGG - chr3_4:78742306-78742325 Msa0525210:exon 50.0%
TTTCTCTCCACATGGCTAGG+TGG + chr3_4:78742316-78742335 None:intergenic 50.0%
CAGTTTCTCTCCACATGGCT+AGG + chr3_4:78742319-78742338 None:intergenic 50.0%
CAAGGGAACATGCACAAGCG+TGG - chr3_4:78739368-78739387 Msa0525210:CDS 55.0%
AGGGAACATGCACAAGCGTG+GGG - chr3_4:78739370-78739389 Msa0525210:CDS 55.0%
GGAGTAGAACGGTATGTGCC+GGG - chr3_4:78740055-78740074 Msa0525210:CDS 55.0%
! GTTTTGTGCCCACGTAACCC+TGG - chr3_4:78740367-78740386 Msa0525210:CDS 55.0%
CTTCCATCACCAGGGTTACG+TGG + chr3_4:78740379-78740398 None:intergenic 55.0%
AAGGTGGTCCTAGAGAGCCA+TGG - chr3_4:78740830-78740849 Msa0525210:CDS 55.0%
!! ATCGATGCTGGTGCTGCTTC+TGG - chr3_4:78741051-78741070 Msa0525210:CDS 55.0%
GCGGCTTCTGTTGGATCTTG+AGG + chr3_4:78741081-78741100 None:intergenic 55.0%
! TCAGGTTCTGGTGCCTCTGT+AGG + chr3_4:78741555-78741574 None:intergenic 55.0%
GGCTAGGTGGTGAGAATTGG+AGG + chr3_4:78742303-78742322 None:intergenic 55.0%
TGCCCACGTAACCCTGGTGA+TGG - chr3_4:78740373-78740392 Msa0525210:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 78738869 78742485 78738869 ID=Msa0525210;Name=Msa0525210
chr3_4 mRNA 78738869 78742485 78738869 ID=Msa0525210-mRNA-1;Parent=Msa0525210;Name=Msa0525210-mRNA-1;_AED=0.04;_eAED=0.04;_QI=85|0.75|1|1|0.75|0.6|5|165|799
chr3_4 exon 78738869 78739479 78738869 ID=Msa0525210-mRNA-1:exon:23441;Parent=Msa0525210-mRNA-1
chr3_4 exon 78739712 78740539 78739712 ID=Msa0525210-mRNA-1:exon:23440;Parent=Msa0525210-mRNA-1
chr3_4 exon 78740729 78741758 78740729 ID=Msa0525210-mRNA-1:exon:23439;Parent=Msa0525210-mRNA-1
chr3_4 exon 78742215 78742345 78742215 ID=Msa0525210-mRNA-1:exon:23438;Parent=Msa0525210-mRNA-1
chr3_4 exon 78742436 78742485 78742436 ID=Msa0525210-mRNA-1:exon:23437;Parent=Msa0525210-mRNA-1
chr3_4 five_prime_UTR 78742436 78742485 78742436 ID=Msa0525210-mRNA-1:five_prime_utr;Parent=Msa0525210-mRNA-1
chr3_4 five_prime_UTR 78742311 78742345 78742311 ID=Msa0525210-mRNA-1:five_prime_utr;Parent=Msa0525210-mRNA-1
chr3_4 CDS 78742215 78742310 78742215 ID=Msa0525210-mRNA-1:cds;Parent=Msa0525210-mRNA-1
chr3_4 CDS 78740729 78741758 78740729 ID=Msa0525210-mRNA-1:cds;Parent=Msa0525210-mRNA-1
chr3_4 CDS 78739712 78740539 78739712 ID=Msa0525210-mRNA-1:cds;Parent=Msa0525210-mRNA-1
chr3_4 CDS 78739034 78739479 78739034 ID=Msa0525210-mRNA-1:cds;Parent=Msa0525210-mRNA-1
chr3_4 three_prime_UTR 78738869 78739033 78738869 ID=Msa0525210-mRNA-1:three_prime_utr;Parent=Msa0525210-mRNA-1
Gene Sequence

>Msa0525210

ATGTTGCACTTACTACACGGGAAGCTTGATGTGACTATATATGAGGTCGATACACTACAAACTCTTGCCGGATGCAATTTCGATCTCTGCAACAAGATTATTGGGATGGGTCTATATGCAACAGTTGATTTAGACAAAGCAAGAGTTGGAAGAACTAGAATGATAGGTAGCCCGAAATGGAATGAAACCTTTCACATTTACTCTGCACATTCAATCTCCAACATTATATTCACTGTCAAACAAGATAACCCCATTGGAGCGACTCTAATTGGAAGAGCTTATGTTCCAGTTGAACAAGTCATAAAGGGCAACATAGTGAATACATGGGTTAATATATTAGATGTGGATCATCGTCCAATACAAGGCGGTTCCAAAATCCATGTTCAAATACAATTCTCACATGTTAAAAATGATCCAAACTGGTCACAAGGACTAAAGAGTCCAGGATTTCAAGGAGTTCCTCACACATTCTTTAAACAAAATAATGGTTGCCAAATTACTCTTTACCAAGATGCACATGTTCTAGATGGTTCTGTTCCGTATATTCCATTGGATGGAGTAGAACGGTATGTGCCGGGAAAATGTTGGGAAGATACTTACAATGCAATTAATGATGCTAAGCATTTTATTTGCATAACTGGTTGGTCTGTTTACACGGAAATAACCTTGATTAGAGATCCAAACAAGTCAACAAGAACAACCATCACTCTTGGGGAGCTTCTTAAGAAGAAAGCCAATGAAGGTGTTAATGTTCTTATGCTTGTTTGGGATGACAGAACTTCTGTTCCTGACTTTAAGAAAGATGGCTTGATGGCAACTCATGATCAAGAAATAGCAGAGTATTTTAGAAACACAAATGTGCATTGTGTTTTGTGCCCACGTAACCCTGGTGATGGAAGAAGTATAGTTCAAGGTTTTGAAATTTCAACTATGTTTACTCATCACCAGAAGACTATAATTGTTGACAGCAAAGTTGCTAGTTCTGCACAATGGAAGAAGAGAACAATCACAAGTTTTGTTGGTGGGATTGATCTTTGTGATGGGAGATATGATACCATGGAACATCCTTTGTTTTCAACTTTGAATACAATTCATCATGATGATTTTCATCAACCAAATTTCCCAGGTGCTTCTATTAACAAAGGTGGTCCTAGAGAGCCATGGCATGATATTCATTGTAAACTAGAAGGACCTGTTGCATGGGATGTGTTGTGCAATTTTGAGCAAAGATGGGAAAAGCAAGTTGGAAAGCAATTAATTCCACTACCTTCAAGCATGTTTCGTGAATATGATATTGCTCGTGTATCGAATGTTGCCACGGCAAATCAAAACAACACATGGAATGTTCAATTGTTTAGATCGATCGATGCTGGTGCTGCTTCTGGCTTCCCTCAAGATCCAACAGAAGCCGCTGAAAAAGGTCTTGTTACTGGAAAAGATAACATCATTGATAGAAGCATTCAAGATGCCTACATAAACGCTATTCGACGAGCTAAGAACTTCGTCTACATTGAAAATCAGTATTTTCTAGGTAGTTCATATGGTTGGAAATCATCGGATATTAAAGTTGAGGATATTGGTGCTTTGCACCTCATACCAAAGGAGTTGTCACTGAAGATTGTTAGCAAGATTGAAGCTGGAGAGAGATTCTCTGTGTACATTGTCATTCCAATGTGGCCAGAAGGTATACCTGAAAGTGCTTCAGTTCAAGCAATATTAGATTGGCAAAGAAGGACTATGGAGATGATGTATTCTGACATAGTTGAAGCCCTTCAAAGAAAAGGAATCAGAGCCAACCCAAGAGATTACTTGTCATTTTATTGCCTTGGAAACCGAGAGGGTAAGAAAATGAATGAATATACTCCTACAGAGGCACCAGAACCTGACAGTGATTATATTAGAGCACAAAATTCTAGAAGATTCATGATATATGTTCATGCCAAAATGATGATAGTTGATGATGAATACATAATCATTGGTTCTGCCAACATAAATCAAAGATCAATGGATGGTGCTAGAGACAGTGAGATTGCAATAGGTGCATTTCAACCAAACCATATAGCCACCAGTAATAGACCACCAAAAGGACAAATATATGGATTTAGACGTGCACTATGGTATGAGCACCTTGGAGATATTGGTGATACAAGCTTCTTTGAAAATCCAGAAAGTTTGAATTGCATTAAGCTTGTAAATCGTTTTGCTGAGACCAATTGGGACATATACTCAAAGGATGCATTTGATGAATACAGATCATTTCATCACCTCATGCATTATCCAATACAAGTAACCAATAATGGAACCATAACTGCTCTTCCAGGATTTGAATGTTTTCCTGATACTAAGGCTAAGATTCTAGGTTCCAAATCTGAGTACCTTCCTCCAATTCTCACCACCTAG

Protein sequence

>Msa0525210

MLHLLHGKLDVTIYEVDTLQTLAGCNFDLCNKIIGMGLYATVDLDKARVGRTRMIGSPKWNETFHIYSAHSISNIIFTVKQDNPIGATLIGRAYVPVEQVIKGNIVNTWVNILDVDHRPIQGGSKIHVQIQFSHVKNDPNWSQGLKSPGFQGVPHTFFKQNNGCQITLYQDAHVLDGSVPYIPLDGVERYVPGKCWEDTYNAINDAKHFICITGWSVYTEITLIRDPNKSTRTTITLGELLKKKANEGVNVLMLVWDDRTSVPDFKKDGLMATHDQEIAEYFRNTNVHCVLCPRNPGDGRSIVQGFEISTMFTHHQKTIIVDSKVASSAQWKKRTITSFVGGIDLCDGRYDTMEHPLFSTLNTIHHDDFHQPNFPGASINKGGPREPWHDIHCKLEGPVAWDVLCNFEQRWEKQVGKQLIPLPSSMFREYDIARVSNVATANQNNTWNVQLFRSIDAGAASGFPQDPTEAAEKGLVTGKDNIIDRSIQDAYINAIRRAKNFVYIENQYFLGSSYGWKSSDIKVEDIGALHLIPKELSLKIVSKIEAGERFSVYIVIPMWPEGIPESASVQAILDWQRRTMEMMYSDIVEALQRKGIRANPRDYLSFYCLGNREGKKMNEYTPTEAPEPDSDYIRAQNSRRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAIGAFQPNHIATSNRPPKGQIYGFRRALWYEHLGDIGDTSFFENPESLNCIKLVNRFAETNWDIYSKDAFDEYRSFHHLMHYPIQVTNNGTITALPGFECFPDTKAKILGSKSEYLPPILTT*