Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0525210 | XP_024633544.2 | 93.947 | 826 | 23 | 1 | 1 | 799 | 1 | 826 | 0.0 | 1614 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0525210 | sp|P93400|PLDA1_TOBAC | 66.052 | 813 | 250 | 10 | 4 | 799 | 5 | 808 | 0.0 | 1089 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0525210 | A0A396J1N9 | 93.947 | 826 | 23 | 1 | 1 | 799 | 1 | 826 | 0.0 | 1614 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0003740 | Msa0525210 | 0.801944 | 7.088501e-49 | -8.615850e-47 |
Msa0015150 | Msa0525210 | 0.895312 | 1.080455e-75 | -8.615850e-47 |
Msa0029960 | Msa0525210 | 0.851687 | 7.546863e-61 | -8.615850e-47 |
Msa0029990 | Msa0525210 | 0.849500 | 3.107299e-60 | -8.615850e-47 |
Msa0043290 | Msa0525210 | 0.804651 | 1.950014e-49 | -8.615850e-47 |
Msa0053850 | Msa0525210 | 0.803220 | 3.867670e-49 | -8.615850e-47 |
Msa0064120 | Msa0525210 | 0.888553 | 5.330780e-73 | -8.615850e-47 |
Msa0071840 | Msa0525210 | 0.850378 | 1.765734e-60 | -8.615850e-47 |
Msa0098050 | Msa0525210 | 0.808193 | 3.493705e-50 | -8.615850e-47 |
Msa0108880 | Msa0525210 | 0.871508 | 6.477908e-67 | -8.615850e-47 |
Msa0125200 | Msa0525210 | 0.812273 | 4.607027e-51 | -8.615850e-47 |
Msa0155180 | Msa0525210 | 0.907830 | 3.313719e-81 | -8.615850e-47 |
Msa0182400 | Msa0525210 | 0.809897 | 1.507920e-50 | -8.615850e-47 |
Msa0382530 | Msa0525210 | 0.997927 | 3.526380e-252 | -8.615850e-47 |
Msa0420680 | Msa0525210 | 0.817884 | 2.616424e-52 | -8.615850e-47 |
Msa0427820 | Msa0525210 | 0.824335 | 8.532324e-54 | -8.615850e-47 |
Msa0432320 | Msa0525210 | 0.971780 | 1.048867e-133 | -8.615850e-47 |
Msa0451170 | Msa0525210 | 0.868775 | 5.082760e-66 | -8.615850e-47 |
Msa0460550 | Msa0525210 | 0.816587 | 5.119914e-52 | -8.615850e-47 |
Msa0460630 | Msa0525210 | 0.805787 | 1.127447e-49 | -8.615850e-47 |
Msa0474060 | Msa0525210 | 0.823805 | 1.136299e-53 | -8.615850e-47 |
Msa0359010 | Msa0525210 | 0.866619 | 2.497703e-65 | -8.615850e-47 |
Msa0498610 | Msa0525210 | 0.871875 | 4.895026e-67 | -8.615850e-47 |
Msa0512520 | Msa0525210 | 0.817270 | 3.597614e-52 | -8.615850e-47 |
Msa0518680 | Msa0525210 | 0.813922 | 2.002782e-51 | -8.615850e-47 |
Msa0525210 | Msa0530390 | 0.806641 | 7.454845e-50 | -8.615850e-47 |
Msa0525210 | Msa0562560 | 0.811903 | 5.546541e-51 | -8.615850e-47 |
Msa0525210 | Msa0579780 | 0.817591 | 3.045728e-52 | -8.615850e-47 |
Msa0525210 | Msa0609300 | 0.834323 | 3.203755e-56 | -8.615850e-47 |
Msa0525210 | Msa0627090 | 0.800407 | 1.462505e-48 | -8.615850e-47 |
Msa0525210 | Msa0649840 | 0.815755 | 7.857427e-52 | -8.615850e-47 |
Msa0525210 | Msa0655910 | 0.818225 | 2.190906e-52 | -8.615850e-47 |
Msa0525210 | Msa0665160 | 0.801848 | 7.419462e-49 | -8.615850e-47 |
Msa0525210 | Msa0691910 | 0.835573 | 1.551504e-56 | -8.615850e-47 |
Msa0525210 | Msa0736440 | 0.812666 | 3.780185e-51 | -8.615850e-47 |
Msa0525210 | Msa0740090 | 0.872135 | 4.012344e-67 | -8.615850e-47 |
Msa0525210 | Msa0782750 | 0.832119 | 1.133964e-55 | -8.615850e-47 |
Msa0525210 | Msa0820380 | 0.847228 | 1.320346e-59 | -8.615850e-47 |
Msa0525210 | Msa0849650 | 0.823991 | 1.027992e-53 | -8.615850e-47 |
Msa0525210 | Msa0862170 | 0.802906 | 4.491645e-49 | -8.615850e-47 |
Msa0525210 | Msa1014320 | 0.868716 | 5.308870e-66 | -8.615850e-47 |
Msa0525210 | Msa1021780 | 0.825302 | 5.049219e-54 | -8.615850e-47 |
Msa0525210 | Msa1055310 | 0.875244 | 3.590699e-68 | -8.615850e-47 |
Msa0525210 | Msa1188170 | 0.838924 | 2.153120e-57 | -8.615850e-47 |
Msa0525210 | Msa1211910 | 0.836513 | 8.955070e-57 | -8.615850e-47 |
Msa0525210 | Msa1257340 | 0.802637 | 5.104951e-49 | -8.615850e-47 |
Msa0525210 | Msa1262860 | 0.821740 | 3.437365e-53 | -8.615850e-47 |
Msa0525210 | Msa1267050 | 0.813900 | 2.025074e-51 | -8.615850e-47 |
Msa0525210 | Msa1267180 | 0.819397 | 1.186394e-52 | -8.615850e-47 |
Msa0525210 | Msa1290380 | 0.818314 | 2.090681e-52 | -8.615850e-47 |
Msa0525210 | Msa1290440 | 0.810070 | 1.383679e-50 | -8.615850e-47 |
Msa0525210 | Msa1356220 | 0.824104 | 9.671953e-54 | -8.615850e-47 |
Msa0525210 | Msa1356350 | 0.820222 | 7.685976e-53 | -8.615850e-47 |
Msa0525210 | Msa1360930 | 0.843049 | 1.779355e-58 | -8.615850e-47 |
Msa0525210 | Msa1382580 | 0.800175 | 1.630529e-48 | -8.615850e-47 |
Msa0525210 | Msa1401520 | 0.803842 | 2.874697e-49 | -8.615850e-47 |
Msa0525210 | Msa1404480 | 0.803900 | 2.795048e-49 | -8.615850e-47 |
Msa0525210 | Msa1429860 | 0.979910 | 5.127249e-149 | -8.615850e-47 |
Msa0525210 | Msa1435630 | 0.998338 | 2.958705e-262 | -8.615850e-47 |
Msa0525210 | Msa1462560 | 0.833625 | 4.788489e-56 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0525210 | MtrunA17_Chr3g0137791 | 93.947 | 826 | 23 | 1 | 1 | 799 | 1 | 826 | 0.0 | 1614 |
Msa0525210 | MtrunA17_Chr3g0137821 | 69.795 | 831 | 210 | 11 | 1 | 799 | 1 | 822 | 0.0 | 1178 |
Msa0525210 | MtrunA17_Chr4g0003411 | 65.062 | 810 | 261 | 9 | 5 | 799 | 6 | 808 | 0.0 | 1081 |
Msa0525210 | MtrunA17_Chr2g0333021 | 65.809 | 816 | 248 | 11 | 4 | 799 | 5 | 809 | 0.0 | 1075 |
Msa0525210 | MtrunA17_Chr7g0246481 | 46.238 | 824 | 387 | 17 | 4 | 788 | 298 | 1104 | 0.0 | 712 |
Msa0525210 | MtrunA17_Chr8g0350951 | 45.828 | 827 | 391 | 19 | 4 | 788 | 228 | 1039 | 0.0 | 707 |
Msa0525210 | MtrunA17_Chr8g0380631 | 43.533 | 866 | 389 | 20 | 4 | 799 | 14 | 849 | 0.0 | 679 |
Msa0525210 | MtrunA17_Chr3g0143471 | 43.218 | 870 | 403 | 20 | 5 | 799 | 13 | 866 | 0.0 | 675 |
Msa0525210 | MtrunA17_Chr5g0398161 | 43.841 | 828 | 402 | 19 | 4 | 788 | 37 | 844 | 0.0 | 673 |
Msa0525210 | MtrunA17_Chr5g0398171 | 43.590 | 819 | 411 | 18 | 4 | 788 | 37 | 838 | 0.0 | 665 |
Msa0525210 | MtrunA17_Chr5g0406161 | 42.260 | 814 | 404 | 15 | 32 | 799 | 79 | 872 | 0.0 | 662 |
Msa0525210 | MtrunA17_Chr2g0330431 | 43.284 | 804 | 403 | 18 | 1 | 799 | 1 | 756 | 0.0 | 627 |
Msa0525210 | MtrunA17_Chr8g0341931 | 41.948 | 801 | 406 | 21 | 4 | 799 | 7 | 753 | 0.0 | 584 |
Msa0525210 | MtrunA17_Chr1g0192401 | 31.727 | 249 | 133 | 11 | 484 | 722 | 733 | 954 | 1.32e-21 | 100 |
Msa0525210 | MtrunA17_Chr1g0192401 | 31.064 | 235 | 119 | 9 | 190 | 411 | 355 | 559 | 5.33e-18 | 89.4 |
Msa0525210 | MtrunA17_Chr2g0295411 | 32.836 | 201 | 103 | 6 | 484 | 679 | 783 | 956 | 1.82e-19 | 94.0 |
Msa0525210 | MtrunA17_Chr2g0295411 | 28.627 | 255 | 127 | 10 | 190 | 422 | 381 | 602 | 1.03e-15 | 82.0 |
Msa0525210 | MtrunA17_Chr5g0406151 | 50.000 | 68 | 30 | 1 | 308 | 375 | 16 | 79 | 2.07e-18 | 80.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0525210 | AT3G15730.1 | 63.647 | 817 | 267 | 9 | 3 | 799 | 4 | 810 | 0.0 | 1073 |
Msa0525210 | AT1G52570.1 | 62.822 | 815 | 275 | 11 | 4 | 799 | 5 | 810 | 0.0 | 1046 |
Msa0525210 | AT1G52570.3 | 62.822 | 815 | 275 | 11 | 4 | 799 | 5 | 810 | 0.0 | 1046 |
Msa0525210 | AT1G52570.2 | 62.822 | 815 | 275 | 11 | 4 | 799 | 5 | 810 | 0.0 | 1046 |
Msa0525210 | AT5G25370.1 | 60.949 | 822 | 288 | 10 | 4 | 799 | 6 | 820 | 0.0 | 1000 |
Msa0525210 | AT5G25370.3 | 60.949 | 822 | 288 | 10 | 4 | 799 | 6 | 820 | 0.0 | 1000 |
Msa0525210 | AT5G25370.2 | 60.949 | 822 | 288 | 10 | 4 | 799 | 6 | 820 | 0.0 | 1000 |
Msa0525210 | AT5G25370.4 | 63.588 | 747 | 260 | 9 | 58 | 799 | 6 | 745 | 0.0 | 960 |
Msa0525210 | AT4G11830.2 | 44.604 | 834 | 399 | 20 | 1 | 788 | 30 | 846 | 0.0 | 704 |
Msa0525210 | AT4G11830.1 | 46.332 | 777 | 373 | 18 | 39 | 788 | 55 | 814 | 0.0 | 699 |
Msa0525210 | AT2G42010.1 | 44.689 | 819 | 404 | 16 | 4 | 788 | 270 | 1073 | 0.0 | 696 |
Msa0525210 | AT4G11840.1 | 44.072 | 835 | 400 | 18 | 2 | 788 | 41 | 856 | 0.0 | 694 |
Msa0525210 | AT2G42010.2 | 43.957 | 844 | 399 | 18 | 4 | 788 | 270 | 1098 | 0.0 | 687 |
Msa0525210 | AT4G11850.1 | 44.444 | 828 | 403 | 17 | 2 | 788 | 37 | 848 | 0.0 | 685 |
Msa0525210 | AT4G00240.1 | 44.175 | 824 | 401 | 16 | 4 | 788 | 114 | 917 | 0.0 | 684 |
Msa0525210 | AT4G11840.2 | 43.682 | 831 | 379 | 17 | 2 | 788 | 41 | 826 | 0.0 | 681 |
Msa0525210 | AT4G00240.3 | 45.385 | 780 | 391 | 14 | 29 | 788 | 1 | 765 | 0.0 | 679 |
Msa0525210 | AT4G00240.2 | 45.714 | 770 | 383 | 14 | 39 | 788 | 128 | 882 | 0.0 | 679 |
Msa0525210 | AT4G35790.2 | 43.618 | 807 | 396 | 13 | 31 | 799 | 72 | 857 | 0.0 | 671 |
Msa0525210 | AT4G35790.1 | 43.276 | 818 | 394 | 14 | 31 | 799 | 72 | 868 | 0.0 | 664 |
Msa0525210 | AT1G55180.1 | 41.563 | 806 | 407 | 21 | 5 | 799 | 10 | 762 | 0.0 | 608 |
Msa0525210 | AT1G55180.2 | 42.038 | 785 | 391 | 20 | 29 | 799 | 6 | 740 | 0.0 | 606 |
Msa0525210 | AT4G35790.3 | 42.326 | 619 | 310 | 8 | 31 | 613 | 72 | 679 | 1.77e-168 | 503 |
Msa0525210 | AT4G11830.4 | 44.026 | 611 | 294 | 13 | 1 | 576 | 30 | 627 | 1.10e-167 | 499 |
Msa0525210 | AT4G11830.3 | 43.760 | 601 | 290 | 13 | 1 | 566 | 30 | 617 | 1.89e-163 | 488 |
Msa0525210 | AT3G05630.1 | 28.099 | 726 | 352 | 31 | 116 | 744 | 304 | 956 | 6.13e-44 | 172 |
Msa0525210 | AT3G16785.3 | 35.961 | 203 | 96 | 7 | 483 | 679 | 756 | 930 | 1.00e-21 | 101 |
Msa0525210 | AT3G16785.3 | 31.250 | 224 | 102 | 8 | 205 | 411 | 389 | 577 | 3.90e-18 | 90.1 |
Msa0525210 | AT3G16785.2 | 35.961 | 203 | 96 | 7 | 483 | 679 | 756 | 930 | 1.00e-21 | 101 |
Msa0525210 | AT3G16785.2 | 31.250 | 224 | 102 | 8 | 205 | 411 | 389 | 577 | 3.90e-18 | 90.1 |
Msa0525210 | AT3G16785.6 | 35.961 | 203 | 96 | 7 | 483 | 679 | 756 | 930 | 1.02e-21 | 101 |
Msa0525210 | AT3G16785.6 | 31.250 | 224 | 102 | 8 | 205 | 411 | 389 | 577 | 3.23e-18 | 90.5 |
Msa0525210 | AT3G16785.5 | 35.961 | 203 | 96 | 7 | 483 | 679 | 756 | 930 | 1.02e-21 | 101 |
Msa0525210 | AT3G16785.5 | 31.250 | 224 | 102 | 8 | 205 | 411 | 389 | 577 | 3.23e-18 | 90.5 |
Msa0525210 | AT3G16785.1 | 35.961 | 203 | 96 | 7 | 483 | 679 | 756 | 930 | 1.02e-21 | 101 |
Msa0525210 | AT3G16785.1 | 31.250 | 224 | 102 | 8 | 205 | 411 | 389 | 577 | 3.63e-18 | 90.1 |
Msa0525210 | AT3G16785.4 | 35.961 | 203 | 96 | 7 | 483 | 679 | 756 | 930 | 1.04e-21 | 101 |
Msa0525210 | AT3G16785.4 | 31.250 | 224 | 102 | 8 | 205 | 411 | 389 | 577 | 2.86e-18 | 90.5 |
Find 168 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCAAAATCACCTGGGAAATT+TGG | 0.100944 | 3_4:+78740719 | None:intergenic |
TTAATGCAATTCAAACTTTC+TGG | 0.122895 | 3_4:+78739248 | None:intergenic |
TCCCTTACCTATCATCATTT+TGG | 0.178826 | 3_4:+78739704 | None:intergenic |
TTGTATTTGAACATGGATTT+TGG | 0.185371 | 3_4:+78741462 | None:intergenic |
GCTTGAACTGAAGCACTTTC+AGG | 0.203277 | 3_4:+78739954 | None:intergenic |
GAAAGGTTTCATTCCATTTC+GGG | 0.221154 | 3_4:+78741662 | None:intergenic |
CCCATTGGAGCGACTCTAAT+TGG | 0.224022 | 3_4:-78741583 | Msa0525210:CDS |
AGCAGTTATGGTTCCATTAT+TGG | 0.224317 | 3_4:+78739121 | None:intergenic |
AATCCATATATTTGTCCTTT+TGG | 0.234668 | 3_4:+78739332 | None:intergenic |
ATCGATGCTGGTGCTGCTTC+TGG | 0.242139 | 3_4:-78740281 | Msa0525210:CDS |
GTCTATTACTGGTGGCTATA+TGG | 0.261291 | 3_4:+78739357 | None:intergenic |
CATCTTGGTAAAGAGTAATT+TGG | 0.273836 | 3_4:+78741341 | None:intergenic |
AAAACATTTCACAGATTATT+GGG | 0.279095 | 3_4:-78741750 | Msa0525210:intron |
TGAAAGGTTTCATTCCATTT+CGG | 0.287963 | 3_4:+78741661 | None:intergenic |
TTAATGTTCTTATGCTTGTT+TGG | 0.298166 | 3_4:-78741087 | Msa0525210:CDS |
CCAACAGAAGCCGCTGAAAA+AGG | 0.298342 | 3_4:-78740245 | Msa0525210:CDS |
CCATTATTGGTTACTTGTAT+TGG | 0.306443 | 3_4:+78739134 | None:intergenic |
CCAATACAAGTAACCAATAA+TGG | 0.313741 | 3_4:-78739134 | Msa0525210:CDS |
GATACTAAGGCTAAGATTCT+AGG | 0.315033 | 3_4:-78739074 | Msa0525210:CDS |
TGTCAACAATTATAGTCTTC+TGG | 0.324805 | 3_4:+78740888 | None:intergenic |
AAGAACATTAACACCTTCAT+TGG | 0.328996 | 3_4:+78741099 | None:intergenic |
ACATTCTTTAAACAAAATAA+TGG | 0.329312 | 3_4:-78741367 | Msa0525210:CDS |
GTTGTTCTTGTTGACTTGTT+TGG | 0.332002 | 3_4:+78741154 | None:intergenic |
TGGAGGAAGGTACTCAGATT+TGG | 0.345102 | 3_4:+78739049 | None:intergenic |
GGAACCATAACTGCTCTTCC+AGG | 0.349450 | 3_4:-78739113 | Msa0525210:CDS |
CCACCAAAAGGACAAATATA+TGG | 0.350161 | 3_4:-78739335 | Msa0525210:CDS |
CCCTTTATGACTTGTTCAAC+TGG | 0.351702 | 3_4:+78741547 | None:intergenic |
GTTGGAAGAACTAGAATGAT+AGG | 0.353330 | 3_4:-78741688 | Msa0525210:CDS |
TAATGTTCTTATGCTTGTTT+GGG | 0.358547 | 3_4:-78741086 | Msa0525210:CDS |
ACTCCATCCAATGGAATATA+CGG | 0.365105 | 3_4:+78741295 | None:intergenic |
GATATTAAAGTTGAGGATAT+TGG | 0.365230 | 3_4:-78740086 | Msa0525210:CDS |
TCCAGTTGAACAAGTCATAA+AGG | 0.366172 | 3_4:-78741548 | Msa0525210:CDS |
ATATAATCACTGTCAGGTTC+TGG | 0.366661 | 3_4:+78739768 | None:intergenic |
CTTTAAGAAAGATGGCTTGA+TGG | 0.371228 | 3_4:-78741041 | Msa0525210:CDS |
CAGTTCAAGCAATATTAGAT+TGG | 0.371630 | 3_4:-78739941 | Msa0525210:CDS |
TTTAGTCCTTGTGACCAGTT+TGG | 0.378654 | 3_4:+78741418 | None:intergenic |
GTTCCTGACTTTAAGAAAGA+TGG | 0.382115 | 3_4:-78741049 | Msa0525210:CDS |
CATGGCTAGGTGGTGAGAAT+TGG | 0.390572 | 3_4:+78739029 | None:intergenic |
TAAAATGACAAGTAATCTCT+TGG | 0.395875 | 3_4:+78739846 | None:intergenic |
AGAGTACAATTACATGGAAA+TGG | 0.400127 | 3_4:+78742423 | None:intergenic |
TTACTGGTGGCTATATGGTT+TGG | 0.403321 | 3_4:+78739362 | None:intergenic |
CAAGATGCACATGTTCTAGA+TGG | 0.408428 | 3_4:-78741325 | Msa0525210:CDS |
GATGATGAATACATAATCAT+TGG | 0.412861 | 3_4:-78739455 | Msa0525210:CDS |
TATGAGCACCTTGGAGATAT+TGG | 0.417376 | 3_4:-78739293 | Msa0525210:CDS |
GTTCATGCCAAAATGATGAT+AGG | 0.420607 | 3_4:-78739711 | Msa0525210:intron |
AGAATCTTAGCCTTAGTATC+AGG | 0.421693 | 3_4:+78739077 | None:intergenic |
TTACATGGAAATGGAGGTTA+AGG | 0.423456 | 3_4:+78742432 | None:intergenic |
CAAGAACAACCATCACTCTT+GGG | 0.423882 | 3_4:-78741141 | Msa0525210:CDS |
CGGCTTCTGTTGGATCTTGA+GGG | 0.427130 | 3_4:+78740255 | None:intergenic |
AAATCCTGGAAGAGCAGTTA+TGG | 0.432056 | 3_4:+78739109 | None:intergenic |
GCACTTTCAGGTATACCTTC+TGG | 0.435666 | 3_4:+78739966 | None:intergenic |
ATCTTCAGTGACAACTCCTT+TGG | 0.436891 | 3_4:+78740047 | None:intergenic |
GCGGCTTCTGTTGGATCTTG+AGG | 0.438003 | 3_4:+78740254 | None:intergenic |
AAGCCATCTTTCTTAAAGTC+AGG | 0.443766 | 3_4:+78741046 | None:intergenic |
AGATTGGCAAAGAAGGACTA+TGG | 0.445851 | 3_4:-78739925 | Msa0525210:CDS |
CAATATTAGATTGGCAAAGA+AGG | 0.446472 | 3_4:-78739932 | Msa0525210:CDS |
GAATGATAGGTAGCCCGAAA+TGG | 0.447072 | 3_4:-78741675 | Msa0525210:CDS |
CCAATTAGAGTCGCTCCAAT+GGG | 0.447711 | 3_4:+78741583 | None:intergenic |
GATATTCATTGTAAACTAGA+AGG | 0.448111 | 3_4:-78740476 | Msa0525210:CDS |
GTTCCGTATATTCCATTGGA+TGG | 0.448817 | 3_4:-78741298 | Msa0525210:CDS |
TTCTAGGTAGTTCATATGGT+TGG | 0.454363 | 3_4:-78740118 | Msa0525210:CDS |
GATACACTACAAACTCTTGC+CGG | 0.455373 | 3_4:-78742240 | Msa0525210:CDS |
CTTGTTTGGATCTCTAATCA+AGG | 0.457534 | 3_4:+78741168 | None:intergenic |
GTGACAACTCCTTTGGTATG+AGG | 0.458272 | 3_4:+78740054 | None:intergenic |
CTTTGAGTATATGTCCCAAT+TGG | 0.459345 | 3_4:+78739202 | None:intergenic |
ACAAGAACAACCATCACTCT+TGG | 0.459719 | 3_4:-78741142 | Msa0525210:CDS |
CCAGTTGAACAAGTCATAAA+GGG | 0.460625 | 3_4:-78741547 | Msa0525210:CDS |
CACAACACATCCCATGCAAC+AGG | 0.462297 | 3_4:+78740452 | None:intergenic |
CGAAACATGCTTGAAGGTAG+TGG | 0.463688 | 3_4:+78740383 | None:intergenic |
AGAGACAGTGAGATTGCAAT+AGG | 0.465168 | 3_4:-78739395 | Msa0525210:CDS |
TGAGGAACTCCTTGAAATCC+TGG | 0.466088 | 3_4:+78741391 | None:intergenic |
ATATCATGCCATGGCTCTCT+AGG | 0.466709 | 3_4:+78740494 | None:intergenic |
TTCTGTTCCGTATATTCCAT+TGG | 0.467036 | 3_4:-78741302 | Msa0525210:CDS |
ATTGTTAGCAAGATTGAAGC+TGG | 0.474341 | 3_4:-78740026 | Msa0525210:CDS |
CTAAAGAGTCCAGGATTTCA+AGG | 0.476603 | 3_4:-78741400 | Msa0525210:CDS |
CATTGATCTTTGATTTATGT+TGG | 0.476676 | 3_4:+78739427 | None:intergenic |
TCAGGAAAACATTCAAATCC+TGG | 0.477356 | 3_4:+78739095 | None:intergenic |
GTTGAAGCCCTTCAAAGAAA+AGG | 0.478206 | 3_4:-78739882 | Msa0525210:CDS |
CAGTTTCTCTCCACATGGCT+AGG | 0.479672 | 3_4:+78739016 | None:intergenic |
TCAGGTTCTGGTGCCTCTGT+AGG | 0.480853 | 3_4:+78739780 | None:intergenic |
AACTGGTTGGTCTGTTTACA+CGG | 0.480935 | 3_4:-78741197 | Msa0525210:CDS |
CATCTAGAACATGTGCATCT+TGG | 0.481308 | 3_4:+78741326 | None:intergenic |
ATGGATTTAGACGTGCACTA+TGG | 0.481715 | 3_4:-78739316 | Msa0525210:CDS |
CATTTCACAGATTATTGGGA+TGG | 0.486910 | 3_4:-78741746 | Msa0525210:intron |
TCCAATTAGAGTCGCTCCAA+TGG | 0.488605 | 3_4:+78741582 | None:intergenic |
GATTTAGACAAAGCAAGAGT+TGG | 0.492961 | 3_4:-78741706 | Msa0525210:CDS |
GGCTAGGTGGTGAGAATTGG+AGG | 0.496635 | 3_4:+78739032 | None:intergenic |
AAAATGACAAGTAATCTCTT+GGG | 0.497438 | 3_4:+78739847 | None:intergenic |
TATTCACGAAACATGCTTGA+AGG | 0.498456 | 3_4:+78740377 | None:intergenic |
GTATGTGCCGGGAAAATGTT+GGG | 0.500103 | 3_4:-78741266 | Msa0525210:CDS |
TTGTTTAGATCGATCGATGC+TGG | 0.502376 | 3_4:-78740293 | Msa0525210:CDS |
GATGGAAGAAGTATAGTTCA+AGG | 0.503461 | 3_4:-78740941 | Msa0525210:CDS |
GTGGGATTGATCTTTGTGAT+GGG | 0.506802 | 3_4:-78740811 | Msa0525210:CDS |
CATGGAAATGGAGGTTAAGG+AGG | 0.508674 | 3_4:+78742435 | None:intergenic |
AGGGCAACATAGTGAATACA+TGG | 0.511698 | 3_4:-78741528 | Msa0525210:CDS |
GCTCTAATATAATCACTGTC+AGG | 0.514466 | 3_4:+78739762 | None:intergenic |
GCTTGATGTGACTATATATG+AGG | 0.515858 | 3_4:-78742265 | Msa0525210:CDS |
TTTGACAGTGAATATAATGT+TGG | 0.517344 | 3_4:+78741615 | None:intergenic |
TGGAGTAGAACGGTATGTGC+CGG | 0.519752 | 3_4:-78741278 | Msa0525210:CDS |
CAACATAAATCAAAGATCAA+TGG | 0.522850 | 3_4:-78739426 | Msa0525210:CDS |
AACTAGAAGGACCTGTTGCA+TGG | 0.522952 | 3_4:-78740463 | Msa0525210:CDS |
GGAGTAGAACGGTATGTGCC+GGG | 0.525843 | 3_4:-78741277 | Msa0525210:CDS |
GGTGGGATTGATCTTTGTGA+TGG | 0.527896 | 3_4:-78740812 | Msa0525210:CDS |
TTTCATCAACCAAATTTCCC+AGG | 0.530381 | 3_4:-78740728 | Msa0525210:intron |
GGTATACCTTCTGGCCACAT+TGG | 0.533593 | 3_4:+78739975 | None:intergenic |
CGGCAAATCAAAACAACACA+TGG | 0.534970 | 3_4:-78740325 | Msa0525210:CDS |
CTTAAGAAGAAAGCCAATGA+AGG | 0.539673 | 3_4:-78741112 | Msa0525210:CDS |
TCTTACCCTCTCGGTTTCCA+AGG | 0.540213 | 3_4:+78739820 | None:intergenic |
CAAAGATGGGAAAAGCAAGT+TGG | 0.540379 | 3_4:-78740419 | Msa0525210:CDS |
ACTATACTTCTTCCATCACC+AGG | 0.545798 | 3_4:+78740947 | None:intergenic |
GCAGAGATCGAAATTGCATC+CGG | 0.546902 | 3_4:+78742221 | None:intergenic |
CTTCCATCACCAGGGTTACG+TGG | 0.548889 | 3_4:+78740956 | None:intergenic |
TTGATAGAATTAATCAGCAA+TGG | 0.551114 | 3_4:+78738969 | None:intergenic |
ATTTCACAGATTATTGGGAT+GGG | 0.555183 | 3_4:-78741745 | Msa0525210:intron |
ACTAGAAGGACCTGTTGCAT+GGG | 0.560087 | 3_4:-78740462 | Msa0525210:CDS |
GTCATGTTGCACTTACTACA+CGG | 0.562058 | 3_4:-78742291 | Msa0525210:CDS |
GTGGATCATCGTCCAATACA+AGG | 0.562412 | 3_4:-78741490 | Msa0525210:CDS |
TTCATATGGTTGGAAATCAT+CGG | 0.572489 | 3_4:-78740108 | Msa0525210:CDS |
ACCAGTAATAGACCACCAAA+AGG | 0.573701 | 3_4:-78739347 | Msa0525210:CDS |
ATGGGTTAATATATTAGATG+TGG | 0.574499 | 3_4:-78741509 | Msa0525210:CDS |
GTCATTCCAATGTGGCCAGA+AGG | 0.574690 | 3_4:-78739981 | Msa0525210:CDS |
TACCGTTCTACTCCATCCAA+TGG | 0.576822 | 3_4:+78741286 | None:intergenic |
ATGGAAATGGAGGTTAAGGA+GGG | 0.580560 | 3_4:+78742436 | None:intergenic |
TGCTTTGCACCTCATACCAA+AGG | 0.582854 | 3_4:-78740063 | Msa0525210:CDS |
TGACAAGTAATCTCTTGGGT+TGG | 0.586202 | 3_4:+78739851 | None:intergenic |
GTCAAACAAGATAACCCCAT+TGG | 0.587028 | 3_4:-78741598 | Msa0525210:CDS |
ATCATCGGATATTAAAGTTG+AGG | 0.587336 | 3_4:-78740093 | Msa0525210:CDS |
AAGAAGCTCCCCAAGAGTGA+TGG | 0.594868 | 3_4:+78741132 | None:intergenic |
TCACAAGGACTAAAGAGTCC+AGG | 0.595640 | 3_4:-78741409 | Msa0525210:CDS |
TCGTCGAATAGCGTTTATGT+AGG | 0.595975 | 3_4:+78740175 | None:intergenic |
CAATTTCGATCTCTGCAACA+AGG | 0.597917 | 3_4:-78742214 | Msa0525210:intron |
TGAAAACAAAGGATGTTCCA+TGG | 0.602384 | 3_4:+78740778 | None:intergenic |
TATTGCCTTGGAAACCGAGA+GGG | 0.604275 | 3_4:-78739825 | Msa0525210:CDS |
TGCCCACGTAACCCTGGTGA+TGG | 0.604924 | 3_4:-78740959 | Msa0525210:CDS |
GGTATGTGCCGGGAAAATGT+TGG | 0.606197 | 3_4:-78741267 | Msa0525210:CDS |
TTTCTCTCCACATGGCTAGG+TGG | 0.613613 | 3_4:+78739019 | None:intergenic |
GTGAGAATTGTATTTGAACA+TGG | 0.616949 | 3_4:+78741455 | None:intergenic |
TTACAATGAATATCATGCCA+TGG | 0.618761 | 3_4:+78740485 | None:intergenic |
ACATTCAGTTTCTCTCCACA+TGG | 0.623036 | 3_4:+78739011 | None:intergenic |
ATGTGCAGAGTAAATGTGAA+AGG | 0.624116 | 3_4:+78741645 | None:intergenic |
ATAAATCAAAGATCAATGGA+TGG | 0.626562 | 3_4:-78739422 | Msa0525210:CDS |
TTCCATCACCAGGGTTACGT+GGG | 0.629779 | 3_4:+78740957 | None:intergenic |
GTACAATTACATGGAAATGG+AGG | 0.633738 | 3_4:+78742426 | None:intergenic |
AAGAACAACCATCACTCTTG+GGG | 0.634263 | 3_4:-78741140 | Msa0525210:CDS |
GTATTCAAAGTTGAAAACAA+AGG | 0.635550 | 3_4:+78740767 | None:intergenic |
GCACTATGGTATGAGCACCT+TGG | 0.638088 | 3_4:-78739302 | Msa0525210:CDS |
AATGATCCAAACTGGTCACA+AGG | 0.638447 | 3_4:-78741424 | Msa0525210:CDS |
CAATTGGGACATATACTCAA+AGG | 0.640794 | 3_4:-78739201 | Msa0525210:CDS |
AGGTGGTGAGAATTGGAGGA+AGG | 0.643329 | 3_4:+78739036 | None:intergenic |
GAATGAATATACTCCTACAG+AGG | 0.643986 | 3_4:-78739793 | Msa0525210:CDS |
TCATGTTGCACTTACTACAC+GGG | 0.647685 | 3_4:-78742290 | Msa0525210:CDS |
TTGTATCACCAATATCTCCA+AGG | 0.650254 | 3_4:+78739285 | None:intergenic |
CTTGTATTGGATAATGCATG+AGG | 0.661800 | 3_4:+78739147 | None:intergenic |
TCGTGTATCGAATGTTGCCA+CGG | 0.661868 | 3_4:-78740345 | Msa0525210:CDS |
AAAGATTCCTGCTTAAAACA+AGG | 0.666302 | 3_4:+78738940 | None:intergenic |
ATTCTCACCACCTAGCCATG+TGG | 0.671398 | 3_4:-78739026 | Msa0525210:exon |
TTCCATTGGATGGAGTAGAA+CGG | 0.671871 | 3_4:-78741288 | Msa0525210:CDS |
GGTGCTTCTATTAACAAAGG+TGG | 0.672280 | 3_4:-78740518 | Msa0525210:CDS |
ACAGGTGCTTCTATTAACAA+AGG | 0.672622 | 3_4:-78740521 | Msa0525210:intron |
AAGTTGCTAGTTCTGCACAA+TGG | 0.673752 | 3_4:-78740862 | Msa0525210:CDS |
TGATGGGAGATATGATACCA+TGG | 0.695563 | 3_4:-78740795 | Msa0525210:CDS |
CTATACTTCTTCCATCACCA+GGG | 0.698859 | 3_4:+78740948 | None:intergenic |
AAGGTGGTCCTAGAGAGCCA+TGG | 0.705923 | 3_4:-78740502 | Msa0525210:CDS |
GGGCAACATAGTGAATACAT+GGG | 0.707757 | 3_4:-78741527 | Msa0525210:CDS |
CAATTAGAGTCGCTCCAATG+GGG | 0.713373 | 3_4:+78741584 | None:intergenic |
TTATTGCCTTGGAAACCGAG+AGG | 0.718876 | 3_4:-78739826 | Msa0525210:CDS |
TGTACATTGTCATTCCAATG+TGG | 0.747438 | 3_4:-78739989 | Msa0525210:CDS |
GATCATCGTCCAATACAAGG+CGG | 0.779275 | 3_4:-78741487 | Msa0525210:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACATTCTTTAAACAAAATAA+TGG | - | chr3_4:78739965-78739984 | Msa0525210:CDS | 15.0% |
!! | AAAATATAAAATATTCCAAC+AGG | - | chr3_4:78740793-78740812 | Msa0525210:CDS | 15.0% |
!! | AATAAATGTAAAATAGAAAC+AGG | + | chr3_4:78741670-78741689 | None:intergenic | 15.0% |
!!! | TAATAAATTTTCTTTTGCAA+AGG | + | chr3_4:78741811-78741830 | None:intergenic | 15.0% |
!! | CAATCTACTTAAAATGAAAT+TGG | + | chr3_4:78739181-78739200 | None:intergenic | 20.0% |
!! | TGACAAATTCATTAGAAAAA+AGG | + | chr3_4:78739248-78739267 | None:intergenic | 20.0% |
!! | AAAAACATTTCACAGATTAT+TGG | - | chr3_4:78739581-78739600 | Msa0525210:intron | 20.0% |
!! | AAAACATTTCACAGATTATT+GGG | - | chr3_4:78739582-78739601 | Msa0525210:intron | 20.0% |
!!! | ATTGAAAATCAGTATTTTCT+AGG | - | chr3_4:78741198-78741217 | Msa0525210:CDS | 20.0% |
!!! | TTGAACTTCAAATTTTATAG+AGG | + | chr3_4:78742440-78742459 | None:intergenic | 20.0% |
!! | TAAGTAAGAGTACAATTACA+TGG | + | chr3_4:78738918-78738937 | None:intergenic | 25.0% |
! | CTTTCAAATTTCGTAAACAA+GGG | - | chr3_4:78739351-78739370 | Msa0525210:CDS | 25.0% |
! | TACAGATTATATAGTCAACA+AGG | + | chr3_4:78739482-78739501 | None:intergenic | 25.0% |
! | TAGGTGTTAGAATGTATAAA+GGG | + | chr3_4:78739552-78739571 | None:intergenic | 25.0% |
! | TTAGGTGTTAGAATGTATAA+AGG | + | chr3_4:78739553-78739572 | None:intergenic | 25.0% |
!!! | AAATGTTTTTACATGTCGTT+AGG | + | chr3_4:78739571-78739590 | None:intergenic | 25.0% |
! | TTTGACAGTGAATATAATGT+TGG | + | chr3_4:78739720-78739739 | None:intergenic | 25.0% |
!! | ATGGGTTAATATATTAGATG+TGG | - | chr3_4:78739823-78739842 | Msa0525210:CDS | 25.0% |
!! | TTGTATTTGAACATGGATTT+TGG | + | chr3_4:78739873-78739892 | None:intergenic | 25.0% |
! | ATGTTAAAAATGATCCAAAC+TGG | - | chr3_4:78739900-78739919 | Msa0525210:CDS | 25.0% |
!!! | TTTTGTTTAAAGAATGTGTG+AGG | + | chr3_4:78739962-78739981 | None:intergenic | 25.0% |
!!! | AAGCATTTTATTTGCATAAC+TGG | - | chr3_4:78740118-78740137 | Msa0525210:CDS | 25.0% |
!!! | ATTTTATTTGCATAACTGGT+TGG | - | chr3_4:78740122-78740141 | Msa0525210:CDS | 25.0% |
! | TTAATGTTCTTATGCTTGTT+TGG | - | chr3_4:78740245-78740264 | Msa0525210:CDS | 25.0% |
! | TAATGTTCTTATGCTTGTTT+GGG | - | chr3_4:78740246-78740265 | Msa0525210:CDS | 25.0% |
! | GTATTCAAAGTTGAAAACAA+AGG | + | chr3_4:78740568-78740587 | None:intergenic | 25.0% |
! | AGGACTTAATTATGAAATGT+TGG | - | chr3_4:78740750-78740769 | Msa0525210:CDS | 25.0% |
! | GATATTCATTGTAAACTAGA+AGG | - | chr3_4:78740856-78740875 | Msa0525210:CDS | 25.0% |
!! | TATTTTCTAGGTAGTTCATA+TGG | - | chr3_4:78741210-78741229 | Msa0525210:CDS | 25.0% |
! | GATATTAAAGTTGAGGATAT+TGG | - | chr3_4:78741246-78741265 | Msa0525210:CDS | 25.0% |
! | AAAATGACAAGTAATCTCTT+GGG | + | chr3_4:78741488-78741507 | None:intergenic | 25.0% |
! | TAAAATGACAAGTAATCTCT+TGG | + | chr3_4:78741489-78741508 | None:intergenic | 25.0% |
! | GAAACAGGTAATATATATGT+TGG | + | chr3_4:78741655-78741674 | None:intergenic | 25.0% |
!!! | ATTGGAAAGTGTCAATTTAA+TGG | + | chr3_4:78741773-78741792 | None:intergenic | 25.0% |
! | GATGATGAATACATAATCAT+TGG | - | chr3_4:78741877-78741896 | Msa0525210:intron | 25.0% |
!! | CATTGATCTTTGATTTATGT+TGG | + | chr3_4:78741908-78741927 | None:intergenic | 25.0% |
! | CAACATAAATCAAAGATCAA+TGG | - | chr3_4:78741906-78741925 | Msa0525210:intron | 25.0% |
! | ATAAATCAAAGATCAATGGA+TGG | - | chr3_4:78741910-78741929 | Msa0525210:intron | 25.0% |
!! | AATCCATATATTTGTCCTTT+TGG | + | chr3_4:78742003-78742022 | None:intergenic | 25.0% |
! | TTAATGCAATTCAAACTTTC+TGG | + | chr3_4:78742087-78742106 | None:intergenic | 25.0% |
! | TTGATAGAATTAATCAGCAA+TGG | + | chr3_4:78742366-78742385 | None:intergenic | 25.0% |
!! | ACTTCAAATTTTATAGAGGT+AGG | + | chr3_4:78742436-78742455 | None:intergenic | 25.0% |
AGAGTACAATTACATGGAAA+TGG | + | chr3_4:78738912-78738931 | None:intergenic | 30.0% | |
GCTTTCAAATTTCGTAAACA+AGG | - | chr3_4:78739350-78739369 | Msa0525210:CDS | 30.0% | |
AATATGTGAAGATATACCTC+TGG | + | chr3_4:78739450-78739469 | None:intergenic | 30.0% | |
ATTTCACAGATTATTGGGAT+GGG | - | chr3_4:78739587-78739606 | Msa0525210:intron | 30.0% | |
TGAAAGGTTTCATTCCATTT+CGG | + | chr3_4:78739674-78739693 | None:intergenic | 30.0% | |
GTGAGAATTGTATTTGAACA+TGG | + | chr3_4:78739880-78739899 | None:intergenic | 30.0% | |
CATCTTGGTAAAGAGTAATT+TGG | + | chr3_4:78739994-78740013 | None:intergenic | 30.0% | |
AAGAACATTAACACCTTCAT+TGG | + | chr3_4:78740236-78740255 | None:intergenic | 30.0% | |
TGTCAACAATTATAGTCTTC+TGG | + | chr3_4:78740447-78740466 | None:intergenic | 30.0% | |
!! | AGAACAATCACAAGTTTTGT+TGG | - | chr3_4:78740499-78740518 | Msa0525210:CDS | 30.0% |
GCATGCATATTTACAATCTT+AGG | - | chr3_4:78740730-78740749 | Msa0525210:CDS | 30.0% | |
TTACAATGAATATCATGCCA+TGG | + | chr3_4:78740850-78740869 | None:intergenic | 30.0% | |
TTCATATGGTTGGAAATCAT+CGG | - | chr3_4:78741224-78741243 | Msa0525210:CDS | 30.0% | |
ATCATCGGATATTAAAGTTG+AGG | - | chr3_4:78741239-78741258 | Msa0525210:CDS | 30.0% | |
CAGTTCAAGCAATATTAGAT+TGG | - | chr3_4:78741391-78741410 | Msa0525210:CDS | 30.0% | |
CAATATTAGATTGGCAAAGA+AGG | - | chr3_4:78741400-78741419 | Msa0525210:CDS | 30.0% | |
! | TCTGATTCCTTTTCTTTGAA+GGG | + | chr3_4:78741460-78741479 | None:intergenic | 30.0% |
!!! | TACTTGTCATTTTATTGCCT+TGG | - | chr3_4:78741495-78741514 | Msa0525210:CDS | 30.0% |
AGGTGTATGTGCTAATTAAT+TGG | + | chr3_4:78741791-78741810 | None:intergenic | 30.0% | |
! | CCATTATTGGTTACTTGTAT+TGG | + | chr3_4:78742201-78742220 | None:intergenic | 30.0% |
CCAATACAAGTAACCAATAA+TGG | - | chr3_4:78742198-78742217 | Msa0525210:intron | 30.0% | |
! | TGAATGTTTTCCTGATACTA+AGG | - | chr3_4:78742245-78742264 | Msa0525210:CDS | 30.0% |
AAAGATTCCTGCTTAAAACA+AGG | + | chr3_4:78742395-78742414 | None:intergenic | 30.0% | |
TTACATGGAAATGGAGGTTA+AGG | + | chr3_4:78738903-78738922 | None:intergenic | 35.0% | |
GTACAATTACATGGAAATGG+AGG | + | chr3_4:78738909-78738928 | None:intergenic | 35.0% | |
!! | TGTTTTTATTGCACACAGCA+AGG | - | chr3_4:78738991-78739010 | Msa0525210:three_prime_UTR | 35.0% |
! | GTTTTTATTGCACACAGCAA+GGG | - | chr3_4:78738992-78739011 | Msa0525210:three_prime_UTR | 35.0% |
GCTTGATGTGACTATATATG+AGG | - | chr3_4:78739067-78739086 | Msa0525210:CDS | 35.0% | |
!! | CTCTGTGTATTTGCTGATTT+CGG | - | chr3_4:78739328-78739347 | Msa0525210:CDS | 35.0% |
CATTTCACAGATTATTGGGA+TGG | - | chr3_4:78739586-78739605 | Msa0525210:intron | 35.0% | |
GATTTAGACAAAGCAAGAGT+TGG | - | chr3_4:78739626-78739645 | Msa0525210:intron | 35.0% | |
GTTGGAAGAACTAGAATGAT+AGG | - | chr3_4:78739644-78739663 | Msa0525210:intron | 35.0% | |
GAAAGGTTTCATTCCATTTC+GGG | + | chr3_4:78739673-78739692 | None:intergenic | 35.0% | |
ATGTGCAGAGTAAATGTGAA+AGG | + | chr3_4:78739690-78739709 | None:intergenic | 35.0% | |
TCCAGTTGAACAAGTCATAA+AGG | - | chr3_4:78739784-78739803 | Msa0525210:CDS | 35.0% | |
CCAGTTGAACAAGTCATAAA+GGG | - | chr3_4:78739785-78739804 | Msa0525210:CDS | 35.0% | |
TTCTGTTCCGTATATTCCAT+TGG | - | chr3_4:78740030-78740049 | Msa0525210:CDS | 35.0% | |
ACTCCATCCAATGGAATATA+CGG | + | chr3_4:78740040-78740059 | None:intergenic | 35.0% | |
CTTGTTTGGATCTCTAATCA+AGG | + | chr3_4:78740167-78740186 | None:intergenic | 35.0% | |
!! | GTTGTTCTTGTTGACTTGTT+TGG | + | chr3_4:78740181-78740200 | None:intergenic | 35.0% |
CTTAAGAAGAAAGCCAATGA+AGG | - | chr3_4:78740220-78740239 | Msa0525210:CDS | 35.0% | |
! | GTTCCTGACTTTAAGAAAGA+TGG | - | chr3_4:78740283-78740302 | Msa0525210:CDS | 35.0% |
AAGCCATCTTTCTTAAAGTC+AGG | + | chr3_4:78740289-78740308 | None:intergenic | 35.0% | |
! | CTTTAAGAAAGATGGCTTGA+TGG | - | chr3_4:78740291-78740310 | Msa0525210:CDS | 35.0% |
! | GATGGAAGAAGTATAGTTCA+AGG | - | chr3_4:78740391-78740410 | Msa0525210:CDS | 35.0% |
!!! | ACAATCACAAGTTTTGTTGG+TGG | - | chr3_4:78740502-78740521 | Msa0525210:CDS | 35.0% |
!!! | CAATCACAAGTTTTGTTGGT+GGG | - | chr3_4:78740503-78740522 | Msa0525210:CDS | 35.0% |
TGAAAACAAAGGATGTTCCA+TGG | + | chr3_4:78740557-78740576 | None:intergenic | 35.0% | |
TTTCATCAACCAAATTTCCC+AGG | - | chr3_4:78740604-78740623 | Msa0525210:intron | 35.0% | |
AACTAGTTCCAAAATCACCT+GGG | + | chr3_4:78740624-78740643 | None:intergenic | 35.0% | |
AAACTAGTTCCAAAATCACC+TGG | + | chr3_4:78740625-78740644 | None:intergenic | 35.0% | |
!! | TTGTTAATAGAAGCACCTGT+TGG | + | chr3_4:78740811-78740830 | None:intergenic | 35.0% |
ACAGGTGCTTCTATTAACAA+AGG | - | chr3_4:78740811-78740830 | Msa0525210:CDS | 35.0% | |
! | TGTGCAATTTTGAGCAAAGA+TGG | - | chr3_4:78740899-78740918 | Msa0525210:CDS | 35.0% |
! | GTGCAATTTTGAGCAAAGAT+GGG | - | chr3_4:78740900-78740919 | Msa0525210:CDS | 35.0% |
TATTCACGAAACATGCTTGA+AGG | + | chr3_4:78740958-78740977 | None:intergenic | 35.0% | |
!!! | AGTAACAAGACCTTTTTCAG+CGG | + | chr3_4:78741100-78741119 | None:intergenic | 35.0% |
TTCTAGGTAGTTCATATGGT+TGG | - | chr3_4:78741214-78741233 | Msa0525210:CDS | 35.0% | |
ATTGTTAGCAAGATTGAAGC+TGG | - | chr3_4:78741306-78741325 | Msa0525210:CDS | 35.0% | |
TGTACATTGTCATTCCAATG+TGG | - | chr3_4:78741343-78741362 | Msa0525210:CDS | 35.0% | |
! | CTCTGATTCCTTTTCTTTGA+AGG | + | chr3_4:78741461-78741480 | None:intergenic | 35.0% |
! | CATTCATTTTCTTACCCTCT+CGG | + | chr3_4:78741524-78741543 | None:intergenic | 35.0% |
GAATGAATATACTCCTACAG+AGG | - | chr3_4:78741539-78741558 | Msa0525210:CDS | 35.0% | |
ATATAATCACTGTCAGGTTC+TGG | + | chr3_4:78741567-78741586 | None:intergenic | 35.0% | |
GCTCTAATATAATCACTGTC+AGG | + | chr3_4:78741573-78741592 | None:intergenic | 35.0% | |
GTTCATGCCAAAATGATGAT+AGG | - | chr3_4:78741621-78741640 | Msa0525210:CDS | 35.0% | |
TGCCAAAATGATGATAGGTA+AGG | - | chr3_4:78741626-78741645 | Msa0525210:CDS | 35.0% | |
GCCAAAATGATGATAGGTAA+GGG | - | chr3_4:78741627-78741646 | Msa0525210:CDS | 35.0% | |
! | TCCCTTACCTATCATCATTT+TGG | + | chr3_4:78741631-78741650 | None:intergenic | 35.0% |
AACGCAGTTCAAATATCTTC+GGG | + | chr3_4:78741723-78741742 | None:intergenic | 35.0% | |
GAACGCAGTTCAAATATCTT+CGG | + | chr3_4:78741724-78741743 | None:intergenic | 35.0% | |
TATTTGAACTGCGTTCTTTG+AGG | - | chr3_4:78741728-78741747 | Msa0525210:CDS | 35.0% | |
! | CCATATATTTGTCCTTTTGG+TGG | + | chr3_4:78742000-78742019 | None:intergenic | 35.0% |
CCACCAAAAGGACAAATATA+TGG | - | chr3_4:78741997-78742016 | Msa0525210:intron | 35.0% | |
TTGTATCACCAATATCTCCA+AGG | + | chr3_4:78742050-78742069 | None:intergenic | 35.0% | |
CTTTGAGTATATGTCCCAAT+TGG | + | chr3_4:78742133-78742152 | None:intergenic | 35.0% | |
CAATTGGGACATATACTCAA+AGG | - | chr3_4:78742131-78742150 | Msa0525210:intron | 35.0% | |
CTTGTATTGGATAATGCATG+AGG | + | chr3_4:78742188-78742207 | None:intergenic | 35.0% | |
AGCAGTTATGGTTCCATTAT+TGG | + | chr3_4:78742214-78742233 | None:intergenic | 35.0% | |
TCAGGAAAACATTCAAATCC+TGG | + | chr3_4:78742240-78742259 | None:intergenic | 35.0% | |
!! | AGAATCTTAGCCTTAGTATC+AGG | + | chr3_4:78742258-78742277 | None:intergenic | 35.0% |
GATACTAAGGCTAAGATTCT+AGG | - | chr3_4:78742258-78742277 | Msa0525210:CDS | 35.0% | |
!!! | AGTAACACCTTGTTTTAAGC+AGG | - | chr3_4:78742385-78742404 | Msa0525210:intron | 35.0% |
ATGGAAATGGAGGTTAAGGA+GGG | + | chr3_4:78738899-78738918 | None:intergenic | 40.0% | |
GTCATGTTGCACTTACTACA+CGG | - | chr3_4:78739041-78739060 | Msa0525210:CDS | 40.0% | |
TCATGTTGCACTTACTACAC+GGG | - | chr3_4:78739042-78739061 | Msa0525210:CDS | 40.0% | |
GATACACTACAAACTCTTGC+CGG | - | chr3_4:78739092-78739111 | Msa0525210:CDS | 40.0% | |
CAATTTCGATCTCTGCAACA+AGG | - | chr3_4:78739118-78739137 | Msa0525210:CDS | 40.0% | |
CGAAATCAGCAAATACACAG+AGG | + | chr3_4:78739330-78739349 | None:intergenic | 40.0% | |
GTCAAACAAGATAACCCCAT+TGG | - | chr3_4:78739734-78739753 | Msa0525210:CDS | 40.0% | |
!! | CCCTTTATGACTTGTTCAAC+TGG | + | chr3_4:78739788-78739807 | None:intergenic | 40.0% |
AGGGCAACATAGTGAATACA+TGG | - | chr3_4:78739804-78739823 | Msa0525210:CDS | 40.0% | |
GGGCAACATAGTGAATACAT+GGG | - | chr3_4:78739805-78739824 | Msa0525210:CDS | 40.0% | |
!!! | ATTTTGGAACCGCCTTGTAT+TGG | + | chr3_4:78739857-78739876 | None:intergenic | 40.0% |
AATGATCCAAACTGGTCACA+AGG | - | chr3_4:78739908-78739927 | Msa0525210:CDS | 40.0% | |
TTTAGTCCTTGTGACCAGTT+TGG | + | chr3_4:78739917-78739936 | None:intergenic | 40.0% | |
CTAAAGAGTCCAGGATTTCA+AGG | - | chr3_4:78739932-78739951 | Msa0525210:CDS | 40.0% | |
! | CATCTAGAACATGTGCATCT+TGG | + | chr3_4:78740009-78740028 | None:intergenic | 40.0% |
! | CAAGATGCACATGTTCTAGA+TGG | - | chr3_4:78740007-78740026 | Msa0525210:CDS | 40.0% |
GTTCCGTATATTCCATTGGA+TGG | - | chr3_4:78740034-78740053 | Msa0525210:CDS | 40.0% | |
TTCCATTGGATGGAGTAGAA+CGG | - | chr3_4:78740044-78740063 | Msa0525210:CDS | 40.0% | |
! | GTATCTTCCCAACATTTTCC+CGG | + | chr3_4:78740076-78740095 | None:intergenic | 40.0% |
!! | AACTGGTTGGTCTGTTTACA+CGG | - | chr3_4:78740135-78740154 | Msa0525210:CDS | 40.0% |
ACAAGAACAACCATCACTCT+TGG | - | chr3_4:78740190-78740209 | Msa0525210:CDS | 40.0% | |
CAAGAACAACCATCACTCTT+GGG | - | chr3_4:78740191-78740210 | Msa0525210:CDS | 40.0% | |
AAGAACAACCATCACTCTTG+GGG | - | chr3_4:78740192-78740211 | Msa0525210:CDS | 40.0% | |
CTATACTTCTTCCATCACCA+GGG | + | chr3_4:78740387-78740406 | None:intergenic | 40.0% | |
ACTATACTTCTTCCATCACC+AGG | + | chr3_4:78740388-78740407 | None:intergenic | 40.0% | |
!! | AAGTTGCTAGTTCTGCACAA+TGG | - | chr3_4:78740470-78740489 | Msa0525210:CDS | 40.0% |
GTGGGATTGATCTTTGTGAT+GGG | - | chr3_4:78740521-78740540 | Msa0525210:intron | 40.0% | |
TGATGGGAGATATGATACCA+TGG | - | chr3_4:78740537-78740556 | Msa0525210:intron | 40.0% | |
CCAAAATCACCTGGGAAATT+TGG | + | chr3_4:78740616-78740635 | None:intergenic | 40.0% | |
! | CCAAATTTCCCAGGTGATTT+TGG | - | chr3_4:78740613-78740632 | Msa0525210:intron | 40.0% |
GGTGCTTCTATTAACAAAGG+TGG | - | chr3_4:78740814-78740833 | Msa0525210:CDS | 40.0% | |
CAAAGATGGGAAAAGCAAGT+TGG | - | chr3_4:78740913-78740932 | Msa0525210:CDS | 40.0% | |
!!! | TGTGTTGTTTTGATTTGCCG+TGG | + | chr3_4:78741007-78741026 | None:intergenic | 40.0% |
CGGCAAATCAAAACAACACA+TGG | - | chr3_4:78741007-78741026 | Msa0525210:CDS | 40.0% | |
TTGTTTAGATCGATCGATGC+TGG | - | chr3_4:78741039-78741058 | Msa0525210:CDS | 40.0% | |
!! | GCTGAAAAAGGTCTTGTTAC+TGG | - | chr3_4:78741099-78741118 | Msa0525210:CDS | 40.0% |
TCGTCGAATAGCGTTTATGT+AGG | + | chr3_4:78741160-78741179 | None:intergenic | 40.0% | |
ATCTTCAGTGACAACTCCTT+TGG | + | chr3_4:78741288-78741307 | None:intergenic | 40.0% | |
AGATTGGCAAAGAAGGACTA+TGG | - | chr3_4:78741407-78741426 | Msa0525210:CDS | 40.0% | |
GTTGAAGCCCTTCAAAGAAA+AGG | - | chr3_4:78741450-78741469 | Msa0525210:CDS | 40.0% | |
TGACAAGTAATCTCTTGGGT+TGG | + | chr3_4:78741484-78741503 | None:intergenic | 40.0% | |
AGAGACAGTGAGATTGCAAT+AGG | - | chr3_4:78741937-78741956 | Msa0525210:intron | 40.0% | |
TTACTGGTGGCTATATGGTT+TGG | + | chr3_4:78741973-78741992 | None:intergenic | 40.0% | |
GTCTATTACTGGTGGCTATA+TGG | + | chr3_4:78741978-78741997 | None:intergenic | 40.0% | |
!! | TTTTGGTGGTCTATTACTGG+TGG | + | chr3_4:78741986-78742005 | None:intergenic | 40.0% |
ACCAGTAATAGACCACCAAA+AGG | - | chr3_4:78741985-78742004 | Msa0525210:intron | 40.0% | |
!! | TCCTTTTGGTGGTCTATTAC+TGG | + | chr3_4:78741989-78742008 | None:intergenic | 40.0% |
ATGGATTTAGACGTGCACTA+TGG | - | chr3_4:78742016-78742035 | Msa0525210:intron | 40.0% | |
TATGAGCACCTTGGAGATAT+TGG | - | chr3_4:78742039-78742058 | Msa0525210:intron | 40.0% | |
! | ATCGTTTTGCTGAGACCAAT+TGG | - | chr3_4:78742115-78742134 | Msa0525210:intron | 40.0% |
! | TCGTTTTGCTGAGACCAATT+GGG | - | chr3_4:78742116-78742135 | Msa0525210:intron | 40.0% |
AAATCCTGGAAGAGCAGTTA+TGG | + | chr3_4:78742226-78742245 | None:intergenic | 40.0% | |
ACATTCAGTTTCTCTCCACA+TGG | + | chr3_4:78742324-78742343 | None:intergenic | 40.0% | |
CATGGAAATGGAGGTTAAGG+AGG | + | chr3_4:78738900-78738919 | None:intergenic | 45.0% | |
GCAGAGATCGAAATTGCATC+CGG | + | chr3_4:78739114-78739133 | None:intergenic | 45.0% | |
! | GATATACCTCTGGCTTGCAT+TGG | + | chr3_4:78739440-78739459 | None:intergenic | 45.0% |
GAATGATAGGTAGCCCGAAA+TGG | - | chr3_4:78739657-78739676 | Msa0525210:intron | 45.0% | |
CAATTAGAGTCGCTCCAATG+GGG | + | chr3_4:78739751-78739770 | None:intergenic | 45.0% | |
CCAATTAGAGTCGCTCCAAT+GGG | + | chr3_4:78739752-78739771 | None:intergenic | 45.0% | |
TCCAATTAGAGTCGCTCCAA+TGG | + | chr3_4:78739753-78739772 | None:intergenic | 45.0% | |
GTGGATCATCGTCCAATACA+AGG | - | chr3_4:78739842-78739861 | Msa0525210:CDS | 45.0% | |
GATCATCGTCCAATACAAGG+CGG | - | chr3_4:78739845-78739864 | Msa0525210:CDS | 45.0% | |
TCACAAGGACTAAAGAGTCC+AGG | - | chr3_4:78739923-78739942 | Msa0525210:CDS | 45.0% | |
TGAGGAACTCCTTGAAATCC+TGG | + | chr3_4:78739944-78739963 | None:intergenic | 45.0% | |
TACCGTTCTACTCCATCCAA+TGG | + | chr3_4:78740049-78740068 | None:intergenic | 45.0% | |
GTATGTGCCGGGAAAATGTT+GGG | - | chr3_4:78740066-78740085 | Msa0525210:CDS | 45.0% | |
GGTGGGATTGATCTTTGTGA+TGG | - | chr3_4:78740520-78740539 | Msa0525210:CDS | 45.0% | |
ATATCATGCCATGGCTCTCT+AGG | + | chr3_4:78740841-78740860 | None:intergenic | 45.0% | |
AACTAGAAGGACCTGTTGCA+TGG | - | chr3_4:78740869-78740888 | Msa0525210:CDS | 45.0% | |
ACTAGAAGGACCTGTTGCAT+GGG | - | chr3_4:78740870-78740889 | Msa0525210:CDS | 45.0% | |
CGAAACATGCTTGAAGGTAG+TGG | + | chr3_4:78740952-78740971 | None:intergenic | 45.0% | |
TCGTGTATCGAATGTTGCCA+CGG | - | chr3_4:78740987-78741006 | Msa0525210:CDS | 45.0% | |
TGCTTTGCACCTCATACCAA+AGG | - | chr3_4:78741269-78741288 | Msa0525210:CDS | 45.0% | |
GTGACAACTCCTTTGGTATG+AGG | + | chr3_4:78741281-78741300 | None:intergenic | 45.0% | |
! | GCACTTTCAGGTATACCTTC+TGG | + | chr3_4:78741369-78741388 | None:intergenic | 45.0% |
! | GCTTGAACTGAAGCACTTTC+AGG | + | chr3_4:78741381-78741400 | None:intergenic | 45.0% |
TTATTGCCTTGGAAACCGAG+AGG | - | chr3_4:78741506-78741525 | Msa0525210:CDS | 45.0% | |
TATTGCCTTGGAAACCGAGA+GGG | - | chr3_4:78741507-78741526 | Msa0525210:CDS | 45.0% | |
!! | TGGAGGAAGGTACTCAGATT+TGG | + | chr3_4:78742286-78742305 | None:intergenic | 45.0% |
AAGGGAACATGCACAAGCGT+GGG | - | chr3_4:78739369-78739388 | Msa0525210:CDS | 50.0% | |
TCAATGCCAATGCAAGCCAG+AGG | - | chr3_4:78739431-78739450 | Msa0525210:CDS | 50.0% | |
CCCATTGGAGCGACTCTAAT+TGG | - | chr3_4:78739749-78739768 | Msa0525210:CDS | 50.0% | |
TGGAGTAGAACGGTATGTGC+CGG | - | chr3_4:78740054-78740073 | Msa0525210:CDS | 50.0% | |
GGTATGTGCCGGGAAAATGT+TGG | - | chr3_4:78740065-78740084 | Msa0525210:CDS | 50.0% | |
AAGAAGCTCCCCAAGAGTGA+TGG | + | chr3_4:78740203-78740222 | None:intergenic | 50.0% | |
TTCCATCACCAGGGTTACGT+GGG | + | chr3_4:78740378-78740397 | None:intergenic | 50.0% | |
CACAACACATCCCATGCAAC+AGG | + | chr3_4:78740883-78740902 | None:intergenic | 50.0% | |
CGGCTTCTGTTGGATCTTGA+GGG | + | chr3_4:78741080-78741099 | None:intergenic | 50.0% | |
!!! | CCTTTTTCAGCGGCTTCTGT+TGG | + | chr3_4:78741090-78741109 | None:intergenic | 50.0% |
CCAACAGAAGCCGCTGAAAA+AGG | - | chr3_4:78741087-78741106 | Msa0525210:CDS | 50.0% | |
GTCATTCCAATGTGGCCAGA+AGG | - | chr3_4:78741351-78741370 | Msa0525210:CDS | 50.0% | |
GGTATACCTTCTGGCCACAT+TGG | + | chr3_4:78741360-78741379 | None:intergenic | 50.0% | |
TCTTACCCTCTCGGTTTCCA+AGG | + | chr3_4:78741515-78741534 | None:intergenic | 50.0% | |
GCACTATGGTATGAGCACCT+TGG | - | chr3_4:78742030-78742049 | Msa0525210:intron | 50.0% | |
GGAACCATAACTGCTCTTCC+AGG | - | chr3_4:78742219-78742238 | Msa0525210:CDS | 50.0% | |
AGGTGGTGAGAATTGGAGGA+AGG | + | chr3_4:78742299-78742318 | None:intergenic | 50.0% | |
CATGGCTAGGTGGTGAGAAT+TGG | + | chr3_4:78742306-78742325 | None:intergenic | 50.0% | |
ATTCTCACCACCTAGCCATG+TGG | - | chr3_4:78742306-78742325 | Msa0525210:exon | 50.0% | |
TTTCTCTCCACATGGCTAGG+TGG | + | chr3_4:78742316-78742335 | None:intergenic | 50.0% | |
CAGTTTCTCTCCACATGGCT+AGG | + | chr3_4:78742319-78742338 | None:intergenic | 50.0% | |
CAAGGGAACATGCACAAGCG+TGG | - | chr3_4:78739368-78739387 | Msa0525210:CDS | 55.0% | |
AGGGAACATGCACAAGCGTG+GGG | - | chr3_4:78739370-78739389 | Msa0525210:CDS | 55.0% | |
GGAGTAGAACGGTATGTGCC+GGG | - | chr3_4:78740055-78740074 | Msa0525210:CDS | 55.0% | |
! | GTTTTGTGCCCACGTAACCC+TGG | - | chr3_4:78740367-78740386 | Msa0525210:CDS | 55.0% |
CTTCCATCACCAGGGTTACG+TGG | + | chr3_4:78740379-78740398 | None:intergenic | 55.0% | |
AAGGTGGTCCTAGAGAGCCA+TGG | - | chr3_4:78740830-78740849 | Msa0525210:CDS | 55.0% | |
!! | ATCGATGCTGGTGCTGCTTC+TGG | - | chr3_4:78741051-78741070 | Msa0525210:CDS | 55.0% |
GCGGCTTCTGTTGGATCTTG+AGG | + | chr3_4:78741081-78741100 | None:intergenic | 55.0% | |
! | TCAGGTTCTGGTGCCTCTGT+AGG | + | chr3_4:78741555-78741574 | None:intergenic | 55.0% |
GGCTAGGTGGTGAGAATTGG+AGG | + | chr3_4:78742303-78742322 | None:intergenic | 55.0% | |
TGCCCACGTAACCCTGGTGA+TGG | - | chr3_4:78740373-78740392 | Msa0525210:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_4 | gene | 78738869 | 78742485 | 78738869 | ID=Msa0525210;Name=Msa0525210 |
chr3_4 | mRNA | 78738869 | 78742485 | 78738869 | ID=Msa0525210-mRNA-1;Parent=Msa0525210;Name=Msa0525210-mRNA-1;_AED=0.04;_eAED=0.04;_QI=85|0.75|1|1|0.75|0.6|5|165|799 |
chr3_4 | exon | 78738869 | 78739479 | 78738869 | ID=Msa0525210-mRNA-1:exon:23441;Parent=Msa0525210-mRNA-1 |
chr3_4 | exon | 78739712 | 78740539 | 78739712 | ID=Msa0525210-mRNA-1:exon:23440;Parent=Msa0525210-mRNA-1 |
chr3_4 | exon | 78740729 | 78741758 | 78740729 | ID=Msa0525210-mRNA-1:exon:23439;Parent=Msa0525210-mRNA-1 |
chr3_4 | exon | 78742215 | 78742345 | 78742215 | ID=Msa0525210-mRNA-1:exon:23438;Parent=Msa0525210-mRNA-1 |
chr3_4 | exon | 78742436 | 78742485 | 78742436 | ID=Msa0525210-mRNA-1:exon:23437;Parent=Msa0525210-mRNA-1 |
chr3_4 | five_prime_UTR | 78742436 | 78742485 | 78742436 | ID=Msa0525210-mRNA-1:five_prime_utr;Parent=Msa0525210-mRNA-1 |
chr3_4 | five_prime_UTR | 78742311 | 78742345 | 78742311 | ID=Msa0525210-mRNA-1:five_prime_utr;Parent=Msa0525210-mRNA-1 |
chr3_4 | CDS | 78742215 | 78742310 | 78742215 | ID=Msa0525210-mRNA-1:cds;Parent=Msa0525210-mRNA-1 |
chr3_4 | CDS | 78740729 | 78741758 | 78740729 | ID=Msa0525210-mRNA-1:cds;Parent=Msa0525210-mRNA-1 |
chr3_4 | CDS | 78739712 | 78740539 | 78739712 | ID=Msa0525210-mRNA-1:cds;Parent=Msa0525210-mRNA-1 |
chr3_4 | CDS | 78739034 | 78739479 | 78739034 | ID=Msa0525210-mRNA-1:cds;Parent=Msa0525210-mRNA-1 |
chr3_4 | three_prime_UTR | 78738869 | 78739033 | 78738869 | ID=Msa0525210-mRNA-1:three_prime_utr;Parent=Msa0525210-mRNA-1 |
Gene Sequence |
Protein sequence |