Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1293730 | XP_012573715.2 | 47.423 | 97 | 22 | 2 | 2 | 98 | 86 | 153 | 1.83e-14 | 75.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1293730 | A0A1S3ED05 | 47.423 | 97 | 22 | 2 | 2 | 98 | 86 | 153 | 8.76e-15 | 75.1 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000190 | Msa1293730 | 0.809075 | 2.263367e-50 | -8.615850e-47 |
| Msa0017510 | Msa1293730 | 0.832989 | 6.900417e-56 | -8.615850e-47 |
| Msa0110970 | Msa1293730 | 0.819461 | 1.147321e-52 | -8.615850e-47 |
| Msa0140780 | Msa1293730 | 0.800544 | 1.371563e-48 | -8.615850e-47 |
| Msa0157290 | Msa1293730 | 0.832898 | 7.266228e-56 | -8.615850e-47 |
| Msa0200260 | Msa1293730 | 0.820519 | 6.572515e-53 | -8.615850e-47 |
| Msa1228190 | Msa1293730 | 0.802070 | 6.678230e-49 | -8.615850e-47 |
| Msa1271260 | Msa1293730 | 0.818657 | 1.747969e-52 | -8.615850e-47 |
| Msa1283860 | Msa1293730 | 0.805490 | 1.301972e-49 | -8.615850e-47 |
| Msa1293730 | Msa1438250 | 0.828788 | 7.399534e-55 | -8.615850e-47 |
| Msa0243100 | Msa1293730 | 0.825954 | 3.535900e-54 | -8.615850e-47 |
| Msa0261340 | Msa1293730 | 0.803727 | 3.036514e-49 | -8.615850e-47 |
| Msa0287650 | Msa1293730 | 0.804201 | 2.419694e-49 | -8.615850e-47 |
| Msa0535040 | Msa1293730 | 0.806332 | 8.658487e-50 | -8.615850e-47 |
| Msa0880140 | Msa1293730 | 0.831971 | 1.233261e-55 | -8.615850e-47 |
| Msa0909120 | Msa1293730 | 0.806453 | 8.168073e-50 | -8.615850e-47 |
| Msa0909140 | Msa1293730 | 0.813710 | 2.230128e-51 | -8.615850e-47 |
| Msa0925180 | Msa1293730 | 0.804577 | 2.021162e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1293730 | MtrunA17_Chr8g0372871 | 100.000 | 36 | 0 | 0 | 2 | 37 | 158 | 193 | 2.23e-16 | 71.6 |
| Msa1293730 | MtrunA17_Chr8g0372881 | 88.095 | 42 | 3 | 1 | 2 | 43 | 190 | 229 | 2.49e-14 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 17 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATCTTGTGGTATTGATTA+TGG | 0.128436 | 8_3:+51187476 | Msa1293730:CDS |
| GGTCAGAATCGTTGTTATTT+TGG | 0.139850 | 8_3:+51187537 | Msa1293730:CDS |
| TTTGGCATTTGGTTCTTATT+TGG | 0.171210 | 8_3:+51186538 | Msa1293730:CDS |
| AGTTGTTTGGCTTTGGCATT+TGG | 0.288675 | 8_3:+51186527 | Msa1293730:CDS |
| TACCAGCAGTTGTTTGGCTT+TGG | 0.320403 | 8_3:+51186520 | Msa1293730:CDS |
| TTGTTTGTTGGAGCTGTTGT+AGG | 0.332186 | 8_3:+51187442 | Msa1293730:CDS |
| CACCATTACCAGCAGTTGTT+TGG | 0.352388 | 8_3:+51186514 | Msa1293730:CDS |
| GGGTCTGCCGTACTTTGCTT+AGG | 0.405724 | 8_3:+51187559 | Msa1293730:CDS |
| TTCATTCGTCTTTAAGCCAA+TGG | 0.484767 | 8_3:-51187603 | None:intergenic |
| AGCCAAACAACTGCTGGTAA+TGG | 0.486744 | 8_3:-51186516 | None:intergenic |
| TGAGCCAAGTGGTTGTTTGT+TGG | 0.493738 | 8_3:+51187430 | Msa1293730:CDS |
| TGCCAAAGCCAAACAACTGC+TGG | 0.514847 | 8_3:-51186522 | None:intergenic |
| AAGAAAACCTAAGCAAAGTA+CGG | 0.563885 | 8_3:-51187566 | None:intergenic |
| AGCTCCAACAAACAACCACT+TGG | 0.567748 | 8_3:-51187434 | None:intergenic |
| TGTTTGTTGGAGCTGTTGTA+GGG | 0.569289 | 8_3:+51187443 | Msa1293730:CDS |
| AACGATTCTGACCCACAAAG+AGG | 0.600535 | 8_3:-51187527 | None:intergenic |
| ACTTCATACAGTGAGCCAAG+TGG | 0.707082 | 8_3:+51187419 | Msa1293730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTTATAAAAAAAAT+GGG | - | chr8_3:51186208-51186227 | None:intergenic | 0.0% |
| !! | TAAAAAATTTATAAAAAAAA+TGG | - | chr8_3:51186209-51186228 | None:intergenic | 0.0% |
| !! | AAAAAATTTATAAAAAAAAT+GGG | - | chr8_3:51186208-51186227 | None:intergenic | 0.0% |
| !! | TAAAAAATTTATAAAAAAAA+TGG | - | chr8_3:51186209-51186228 | None:intergenic | 0.0% |
| !!! | CTTTATTTTATGTAAATAAA+TGG | + | chr8_3:51186094-51186113 | Msa1293730:intron | 10.0% |
| !!! | TATATTTTTATATGTTTCTT+TGG | + | chr8_3:51186452-51186471 | Msa1293730:intron | 10.0% |
| !! | AAATACTTCTAATTAAAATA+TGG | + | chr8_3:51187239-51187258 | Msa1293730:intron | 10.0% |
| !!! | CTTTATTTTATGTAAATAAA+TGG | + | chr8_3:51186094-51186113 | Msa1293730:intron | 10.0% |
| !!! | TATATTTTTATATGTTTCTT+TGG | + | chr8_3:51186452-51186471 | Msa1293730:intron | 10.0% |
| !! | AAATACTTCTAATTAAAATA+TGG | + | chr8_3:51187239-51187258 | Msa1293730:intron | 10.0% |
| !! | CTGATACATAATTATAAAAA+CGG | - | chr8_3:51185867-51185886 | None:intergenic | 15.0% |
| !! | ATTTATAAAAAAAATGGGAT+GGG | - | chr8_3:51186203-51186222 | None:intergenic | 15.0% |
| !! | AATTTATAAAAAAAATGGGA+TGG | - | chr8_3:51186204-51186223 | None:intergenic | 15.0% |
| !! | ATGTAATTCTATTGTATTTA+TGG | - | chr8_3:51186429-51186448 | None:intergenic | 15.0% |
| !! | CTGATACATAATTATAAAAA+CGG | - | chr8_3:51185867-51185886 | None:intergenic | 15.0% |
| !! | ATTTATAAAAAAAATGGGAT+GGG | - | chr8_3:51186203-51186222 | None:intergenic | 15.0% |
| !! | AATTTATAAAAAAAATGGGA+TGG | - | chr8_3:51186204-51186223 | None:intergenic | 15.0% |
| !! | ATGTAATTCTATTGTATTTA+TGG | - | chr8_3:51186429-51186448 | None:intergenic | 15.0% |
| !! | AAATTACAGCAGAAATAAAA+TGG | - | chr8_3:51186021-51186040 | None:intergenic | 20.0% |
| !!! | ATATTTTATGTATACGTAAC+AGG | - | chr8_3:51186068-51186087 | None:intergenic | 20.0% |
| !! | AAATTACAGCAGAAATAAAA+TGG | - | chr8_3:51186021-51186040 | None:intergenic | 20.0% |
| !!! | ATATTTTATGTATACGTAAC+AGG | - | chr8_3:51186068-51186087 | None:intergenic | 20.0% |
| ! | GACATACTAGTAAACTAAAT+TGG | - | chr8_3:51186580-51186599 | None:intergenic | 25.0% |
| ! | ACATAAATTTGATCTCATAC+AGG | + | chr8_3:51186727-51186746 | Msa1293730:intron | 25.0% |
| ! | CATAAATTTGATCTCATACA+GGG | + | chr8_3:51186728-51186747 | Msa1293730:intron | 25.0% |
| ! | AAAATTATTAAATGTCCCCA+AGG | + | chr8_3:51186912-51186931 | Msa1293730:intron | 25.0% |
| !!! | AGTATATTATGTTGGTAGTT+AGG | - | chr8_3:51186993-51187012 | None:intergenic | 25.0% |
| ! | TAGTTGTCAGTATATTATGT+TGG | - | chr8_3:51187001-51187020 | None:intergenic | 25.0% |
| ! | AAGAAATTATGTGCACTAAA+TGG | - | chr8_3:51187084-51187103 | None:intergenic | 25.0% |
| ! | GAGAATAAAACACTTAACAT+TGG | - | chr8_3:51187355-51187374 | None:intergenic | 25.0% |
| ! | GACATACTAGTAAACTAAAT+TGG | - | chr8_3:51186580-51186599 | None:intergenic | 25.0% |
| ! | ACATAAATTTGATCTCATAC+AGG | + | chr8_3:51186727-51186746 | Msa1293730:intron | 25.0% |
| ! | CATAAATTTGATCTCATACA+GGG | + | chr8_3:51186728-51186747 | Msa1293730:intron | 25.0% |
| ! | AAAATTATTAAATGTCCCCA+AGG | + | chr8_3:51186912-51186931 | Msa1293730:intron | 25.0% |
| !!! | AGTATATTATGTTGGTAGTT+AGG | - | chr8_3:51186993-51187012 | None:intergenic | 25.0% |
| ! | TAGTTGTCAGTATATTATGT+TGG | - | chr8_3:51187001-51187020 | None:intergenic | 25.0% |
| ! | AAGAAATTATGTGCACTAAA+TGG | - | chr8_3:51187084-51187103 | None:intergenic | 25.0% |
| ! | GAGAATAAAACACTTAACAT+TGG | - | chr8_3:51187355-51187374 | None:intergenic | 25.0% |
| GAATTTCACAGTGAATACAA+TGG | - | chr8_3:51185931-51185950 | None:intergenic | 30.0% | |
| !! | TTTGGCATTTGGTTCTTATT+TGG | + | chr8_3:51186538-51186557 | Msa1293730:CDS | 30.0% |
| !!! | CTTTTTTATTCTCGTATCCT+TGG | + | chr8_3:51186599-51186618 | Msa1293730:intron | 30.0% |
| ! | TTTTGTGTACTTCATGACAT+TGG | + | chr8_3:51186644-51186663 | Msa1293730:intron | 30.0% |
| ! | AAGACTATGATGGAAAGTTA+AGG | - | chr8_3:51186673-51186692 | None:intergenic | 30.0% |
| TAACAAAGTTCTTGTGAAGA+GGG | - | chr8_3:51186767-51186786 | None:intergenic | 30.0% | |
| !! | CTATCTTGTGGTATTGATTA+TGG | + | chr8_3:51187476-51187495 | Msa1293730:CDS | 30.0% |
| !!! | GTCAGAATCGTTGTTATTTT+GGG | + | chr8_3:51187538-51187557 | Msa1293730:CDS | 30.0% |
| !!! | TCAGAATCGTTGTTATTTTG+GGG | + | chr8_3:51187539-51187558 | Msa1293730:CDS | 30.0% |
| AAGAAAACCTAAGCAAAGTA+CGG | - | chr8_3:51187569-51187588 | None:intergenic | 30.0% | |
| ! | CTTAGGTTTTCTTTTACATG+TGG | + | chr8_3:51187576-51187595 | Msa1293730:CDS | 30.0% |
| GAATTTCACAGTGAATACAA+TGG | - | chr8_3:51185931-51185950 | None:intergenic | 30.0% | |
| !! | TTTGGCATTTGGTTCTTATT+TGG | + | chr8_3:51186538-51186557 | Msa1293730:CDS | 30.0% |
| !!! | CTTTTTTATTCTCGTATCCT+TGG | + | chr8_3:51186599-51186618 | Msa1293730:intron | 30.0% |
| ! | TTTTGTGTACTTCATGACAT+TGG | + | chr8_3:51186644-51186663 | Msa1293730:intron | 30.0% |
| ! | AAGACTATGATGGAAAGTTA+AGG | - | chr8_3:51186673-51186692 | None:intergenic | 30.0% |
| TAACAAAGTTCTTGTGAAGA+GGG | - | chr8_3:51186767-51186786 | None:intergenic | 30.0% | |
| !! | CTATCTTGTGGTATTGATTA+TGG | + | chr8_3:51187476-51187495 | Msa1293730:CDS | 30.0% |
| !!! | GTCAGAATCGTTGTTATTTT+GGG | + | chr8_3:51187538-51187557 | Msa1293730:CDS | 30.0% |
| !!! | TCAGAATCGTTGTTATTTTG+GGG | + | chr8_3:51187539-51187558 | Msa1293730:CDS | 30.0% |
| AAGAAAACCTAAGCAAAGTA+CGG | - | chr8_3:51187569-51187588 | None:intergenic | 30.0% | |
| ! | CTTAGGTTTTCTTTTACATG+TGG | + | chr8_3:51187576-51187595 | Msa1293730:CDS | 30.0% |
| TGGAACAACACATATGCAAA+AGG | - | chr8_3:51186001-51186020 | None:intergenic | 35.0% | |
| ATAAAAAAAATGGGATGGGC+TGG | - | chr8_3:51186199-51186218 | None:intergenic | 35.0% | |
| TCATCTAGAAGAATCAACTC+AGG | + | chr8_3:51186325-51186344 | Msa1293730:intron | 35.0% | |
| CATCTAGAAGAATCAACTCA+GGG | + | chr8_3:51186326-51186345 | Msa1293730:intron | 35.0% | |
| TATGTCTTCTCTCTACTTCA+TGG | + | chr8_3:51186368-51186387 | Msa1293730:intron | 35.0% | |
| ACACAAAAAAGCAGAGAGTA+AGG | - | chr8_3:51186632-51186651 | None:intergenic | 35.0% | |
| GGTAGTAACTAAGACTATGA+TGG | - | chr8_3:51186683-51186702 | None:intergenic | 35.0% | |
| TAGTTACTACCTCATCCATT+AGG | + | chr8_3:51186692-51186711 | Msa1293730:intron | 35.0% | |
| TGTAAACATGATGCACCTAA+TGG | - | chr8_3:51186710-51186729 | None:intergenic | 35.0% | |
| GTAACAAAGTTCTTGTGAAG+AGG | - | chr8_3:51186768-51186787 | None:intergenic | 35.0% | |
| ! | GACATCCAAAGACTTTGAAA+AGG | + | chr8_3:51186950-51186969 | Msa1293730:intron | 35.0% |
| ! | GATCTCCTTTTCAAAGTCTT+TGG | - | chr8_3:51186958-51186977 | None:intergenic | 35.0% |
| ! | AGACTTTGAAAAGGAGATCT+AGG | + | chr8_3:51186959-51186978 | Msa1293730:intron | 35.0% |
| ! | GACTTTGAAAAGGAGATCTA+GGG | + | chr8_3:51186960-51186979 | Msa1293730:intron | 35.0% |
| !!! | TGAGCTTGTTACTTTTGTCA+TGG | + | chr8_3:51187292-51187311 | Msa1293730:intron | 35.0% |
| !! | TTTGTTTTCAGTCATACCTG+CGG | + | chr8_3:51187385-51187404 | Msa1293730:intron | 35.0% |
| ! | ATGCTTTTGTATCCTCTTTG+TGG | + | chr8_3:51187515-51187534 | Msa1293730:CDS | 35.0% |
| ! | TGCTTTTGTATCCTCTTTGT+GGG | + | chr8_3:51187516-51187535 | Msa1293730:CDS | 35.0% |
| !!! | GGTCAGAATCGTTGTTATTT+TGG | + | chr8_3:51187537-51187556 | Msa1293730:CDS | 35.0% |
| TGGAACAACACATATGCAAA+AGG | - | chr8_3:51186001-51186020 | None:intergenic | 35.0% | |
| ATAAAAAAAATGGGATGGGC+TGG | - | chr8_3:51186199-51186218 | None:intergenic | 35.0% | |
| TCATCTAGAAGAATCAACTC+AGG | + | chr8_3:51186325-51186344 | Msa1293730:intron | 35.0% | |
| CATCTAGAAGAATCAACTCA+GGG | + | chr8_3:51186326-51186345 | Msa1293730:intron | 35.0% | |
| TATGTCTTCTCTCTACTTCA+TGG | + | chr8_3:51186368-51186387 | Msa1293730:intron | 35.0% | |
| ACACAAAAAAGCAGAGAGTA+AGG | - | chr8_3:51186632-51186651 | None:intergenic | 35.0% | |
| GGTAGTAACTAAGACTATGA+TGG | - | chr8_3:51186683-51186702 | None:intergenic | 35.0% | |
| TAGTTACTACCTCATCCATT+AGG | + | chr8_3:51186692-51186711 | Msa1293730:intron | 35.0% | |
| TGTAAACATGATGCACCTAA+TGG | - | chr8_3:51186710-51186729 | None:intergenic | 35.0% | |
| GTAACAAAGTTCTTGTGAAG+AGG | - | chr8_3:51186768-51186787 | None:intergenic | 35.0% | |
| ! | GACATCCAAAGACTTTGAAA+AGG | + | chr8_3:51186950-51186969 | Msa1293730:intron | 35.0% |
| ! | GATCTCCTTTTCAAAGTCTT+TGG | - | chr8_3:51186958-51186977 | None:intergenic | 35.0% |
| ! | AGACTTTGAAAAGGAGATCT+AGG | + | chr8_3:51186959-51186978 | Msa1293730:intron | 35.0% |
| ! | GACTTTGAAAAGGAGATCTA+GGG | + | chr8_3:51186960-51186979 | Msa1293730:intron | 35.0% |
| !!! | TGAGCTTGTTACTTTTGTCA+TGG | + | chr8_3:51187292-51187311 | Msa1293730:intron | 35.0% |
| !! | TTTGTTTTCAGTCATACCTG+CGG | + | chr8_3:51187385-51187404 | Msa1293730:intron | 35.0% |
| ! | ATGCTTTTGTATCCTCTTTG+TGG | + | chr8_3:51187515-51187534 | Msa1293730:CDS | 35.0% |
| ! | TGCTTTTGTATCCTCTTTGT+GGG | + | chr8_3:51187516-51187535 | Msa1293730:CDS | 35.0% |
| !!! | GGTCAGAATCGTTGTTATTT+TGG | + | chr8_3:51187537-51187556 | Msa1293730:CDS | 35.0% |
| TATCGACAATAGTCGTGATC+AGG | + | chr8_3:51186135-51186154 | Msa1293730:intron | 40.0% | |
| ATCGACAATAGTCGTGATCA+GGG | + | chr8_3:51186136-51186155 | Msa1293730:intron | 40.0% | |
| TCATGGAAATGCAGATGTGT+TGG | + | chr8_3:51186385-51186404 | Msa1293730:intron | 40.0% | |
| ! | TGTTTCTTTGGTGATCATGC+AGG | + | chr8_3:51186464-51186483 | Msa1293730:intron | 40.0% |
| !! | AGTTGTTTGGCTTTGGCATT+TGG | + | chr8_3:51186527-51186546 | Msa1293730:CDS | 40.0% |
| ! | TTGTTTTCAGTCATACCTGC+GGG | + | chr8_3:51187386-51187405 | Msa1293730:intron | 40.0% |
| ! | TTGTTTGTTGGAGCTGTTGT+AGG | + | chr8_3:51187442-51187461 | Msa1293730:CDS | 40.0% |
| ! | TGTTTGTTGGAGCTGTTGTA+GGG | + | chr8_3:51187443-51187462 | Msa1293730:CDS | 40.0% |
| !! | GGTCGATTTTCTCTATCTTG+TGG | + | chr8_3:51187464-51187483 | Msa1293730:CDS | 40.0% |
| ! | TTTTACATGTGGTTCGCCAT+TGG | + | chr8_3:51187587-51187606 | Msa1293730:CDS | 40.0% |
| TATCGACAATAGTCGTGATC+AGG | + | chr8_3:51186135-51186154 | Msa1293730:intron | 40.0% | |
| ATCGACAATAGTCGTGATCA+GGG | + | chr8_3:51186136-51186155 | Msa1293730:intron | 40.0% | |
| TCATGGAAATGCAGATGTGT+TGG | + | chr8_3:51186385-51186404 | Msa1293730:intron | 40.0% | |
| ! | TGTTTCTTTGGTGATCATGC+AGG | + | chr8_3:51186464-51186483 | Msa1293730:intron | 40.0% |
| !! | AGTTGTTTGGCTTTGGCATT+TGG | + | chr8_3:51186527-51186546 | Msa1293730:CDS | 40.0% |
| ! | TTGTTTTCAGTCATACCTGC+GGG | + | chr8_3:51187386-51187405 | Msa1293730:intron | 40.0% |
| ! | TTGTTTGTTGGAGCTGTTGT+AGG | + | chr8_3:51187442-51187461 | Msa1293730:CDS | 40.0% |
| ! | TGTTTGTTGGAGCTGTTGTA+GGG | + | chr8_3:51187443-51187462 | Msa1293730:CDS | 40.0% |
| !! | GGTCGATTTTCTCTATCTTG+TGG | + | chr8_3:51187464-51187483 | Msa1293730:CDS | 40.0% |
| ! | TTTTACATGTGGTTCGCCAT+TGG | + | chr8_3:51187587-51187606 | Msa1293730:CDS | 40.0% |
| TCGACAATAGTCGTGATCAG+GGG | + | chr8_3:51186137-51186156 | Msa1293730:intron | 45.0% | |
| CACCATTACCAGCAGTTGTT+TGG | + | chr8_3:51186514-51186533 | Msa1293730:CDS | 45.0% | |
| AGCCAAACAACTGCTGGTAA+TGG | - | chr8_3:51186519-51186538 | None:intergenic | 45.0% | |
| ! | TACCAGCAGTTGTTTGGCTT+TGG | + | chr8_3:51186520-51186539 | Msa1293730:CDS | 45.0% |
| TTATTCTCGTATCCTTGGCG+TGG | + | chr8_3:51186604-51186623 | Msa1293730:intron | 45.0% | |
| ! | CATGATGCACCTAATGGATG+AGG | - | chr8_3:51186704-51186723 | None:intergenic | 45.0% |
| ACCACTTGAGCTATACCTTG+GGG | - | chr8_3:51186930-51186949 | None:intergenic | 45.0% | |
| CACCACTTGAGCTATACCTT+GGG | - | chr8_3:51186931-51186950 | None:intergenic | 45.0% | |
| TCACCACTTGAGCTATACCT+TGG | - | chr8_3:51186932-51186951 | None:intergenic | 45.0% | |
| CAACTAGCATTCGCTCAGTA+TGG | + | chr8_3:51187015-51187034 | Msa1293730:intron | 45.0% | |
| CTCAGTATGGATCGAGTGAT+AGG | + | chr8_3:51187028-51187047 | Msa1293730:intron | 45.0% | |
| ACTTCATACAGTGAGCCAAG+TGG | + | chr8_3:51187419-51187438 | Msa1293730:CDS | 45.0% | |
| TGAGCCAAGTGGTTGTTTGT+TGG | + | chr8_3:51187430-51187449 | Msa1293730:CDS | 45.0% | |
| AGCTCCAACAAACAACCACT+TGG | - | chr8_3:51187437-51187456 | None:intergenic | 45.0% | |
| AACGATTCTGACCCACAAAG+AGG | - | chr8_3:51187530-51187549 | None:intergenic | 45.0% | |
| TCGACAATAGTCGTGATCAG+GGG | + | chr8_3:51186137-51186156 | Msa1293730:intron | 45.0% | |
| CACCATTACCAGCAGTTGTT+TGG | + | chr8_3:51186514-51186533 | Msa1293730:CDS | 45.0% | |
| AGCCAAACAACTGCTGGTAA+TGG | - | chr8_3:51186519-51186538 | None:intergenic | 45.0% | |
| ! | TACCAGCAGTTGTTTGGCTT+TGG | + | chr8_3:51186520-51186539 | Msa1293730:CDS | 45.0% |
| TTATTCTCGTATCCTTGGCG+TGG | + | chr8_3:51186604-51186623 | Msa1293730:intron | 45.0% | |
| ! | CATGATGCACCTAATGGATG+AGG | - | chr8_3:51186704-51186723 | None:intergenic | 45.0% |
| ACCACTTGAGCTATACCTTG+GGG | - | chr8_3:51186930-51186949 | None:intergenic | 45.0% | |
| CACCACTTGAGCTATACCTT+GGG | - | chr8_3:51186931-51186950 | None:intergenic | 45.0% | |
| TCACCACTTGAGCTATACCT+TGG | - | chr8_3:51186932-51186951 | None:intergenic | 45.0% | |
| CAACTAGCATTCGCTCAGTA+TGG | + | chr8_3:51187015-51187034 | Msa1293730:intron | 45.0% | |
| CTCAGTATGGATCGAGTGAT+AGG | + | chr8_3:51187028-51187047 | Msa1293730:intron | 45.0% | |
| ACTTCATACAGTGAGCCAAG+TGG | + | chr8_3:51187419-51187438 | Msa1293730:CDS | 45.0% | |
| TGAGCCAAGTGGTTGTTTGT+TGG | + | chr8_3:51187430-51187449 | Msa1293730:CDS | 45.0% | |
| AGCTCCAACAAACAACCACT+TGG | - | chr8_3:51187437-51187456 | None:intergenic | 45.0% | |
| AACGATTCTGACCCACAAAG+AGG | - | chr8_3:51187530-51187549 | None:intergenic | 45.0% | |
| ACAATAGTCGTGATCAGGGG+CGG | + | chr8_3:51186140-51186159 | Msa1293730:intron | 50.0% | |
| !! | AAAAATGGGATGGGCTGGTG+TGG | - | chr8_3:51186194-51186213 | None:intergenic | 50.0% |
| TGCCAAAGCCAAACAACTGC+TGG | - | chr8_3:51186525-51186544 | None:intergenic | 50.0% | |
| TCCCCAAGGTATAGCTCAAG+TGG | + | chr8_3:51186926-51186945 | Msa1293730:intron | 50.0% | |
| GGATCGAGTGATAGGTGACT+TGG | + | chr8_3:51187036-51187055 | Msa1293730:intron | 50.0% | |
| ! | GAAGTTTTTGTGACACCCGC+AGG | - | chr8_3:51187404-51187423 | None:intergenic | 50.0% |
| ACAATAGTCGTGATCAGGGG+CGG | + | chr8_3:51186140-51186159 | Msa1293730:intron | 50.0% | |
| !! | AAAAATGGGATGGGCTGGTG+TGG | - | chr8_3:51186194-51186213 | None:intergenic | 50.0% |
| TGCCAAAGCCAAACAACTGC+TGG | - | chr8_3:51186525-51186544 | None:intergenic | 50.0% | |
| TCCCCAAGGTATAGCTCAAG+TGG | + | chr8_3:51186926-51186945 | Msa1293730:intron | 50.0% | |
| GGATCGAGTGATAGGTGACT+TGG | + | chr8_3:51187036-51187055 | Msa1293730:intron | 50.0% | |
| ! | GAAGTTTTTGTGACACCCGC+AGG | - | chr8_3:51187404-51187423 | None:intergenic | 50.0% |
| ! | GATCTGTCTGAGGCTGAGTG+TGG | + | chr8_3:51186162-51186181 | Msa1293730:intron | 55.0% |
| ! | GAGAGTAAGGTACCACGCCA+AGG | - | chr8_3:51186619-51186638 | None:intergenic | 55.0% |
| GGGTCTGCCGTACTTTGCTT+AGG | + | chr8_3:51187559-51187578 | Msa1293730:CDS | 55.0% | |
| ! | GATCTGTCTGAGGCTGAGTG+TGG | + | chr8_3:51186162-51186181 | Msa1293730:intron | 55.0% |
| ! | GAGAGTAAGGTACCACGCCA+AGG | - | chr8_3:51186619-51186638 | None:intergenic | 55.0% |
| GGGTCTGCCGTACTTTGCTT+AGG | + | chr8_3:51187559-51187578 | Msa1293730:CDS | 55.0% | |
| ATCAGGGGCGGATCTGTCTG+AGG | + | chr8_3:51186152-51186171 | Msa1293730:intron | 60.0% | |
| ATCAGGGGCGGATCTGTCTG+AGG | + | chr8_3:51186152-51186171 | Msa1293730:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 51185819 | 51187614 | 51185819 | ID=Msa1293730;Name=Msa1293730 |
| chr8_3 | mRNA | 51185819 | 51187614 | 51185819 | ID=Msa1293730-mRNA-1;Parent=Msa1293730;Name=Msa1293730-mRNA-1;_AED=0.54;_eAED=0.89;_QI=0|0|0|0.33|0.5|0.66|3|0|98 |
| chr8_3 | exon | 51185819 | 51185822 | 51185819 | ID=Msa1293730-mRNA-1:exon:14309;Parent=Msa1293730-mRNA-1 |
| chr8_3 | exon | 51186486 | 51186559 | 51186486 | ID=Msa1293730-mRNA-1:exon:14310;Parent=Msa1293730-mRNA-1 |
| chr8_3 | exon | 51187396 | 51187614 | 51187396 | ID=Msa1293730-mRNA-1:exon:14311;Parent=Msa1293730-mRNA-1 |
| chr8_3 | CDS | 51185819 | 51185822 | 51185819 | ID=Msa1293730-mRNA-1:cds;Parent=Msa1293730-mRNA-1 |
| chr8_3 | CDS | 51186486 | 51186559 | 51186486 | ID=Msa1293730-mRNA-1:cds;Parent=Msa1293730-mRNA-1 |
| chr8_3 | CDS | 51187396 | 51187614 | 51187396 | ID=Msa1293730-mRNA-1:cds;Parent=Msa1293730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
