AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1297390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1297390 MtrunA17_Chr4g0054621 50.920 326 97 11 3 270 22 342 7.35e-84 254
Msa1297390 MtrunA17_Chr2g0307131 38.484 343 123 10 5 269 23 355 3.42e-55 181
Msa1297390 MtrunA17_Chr6g0468491 40.248 323 127 13 5 270 1 314 1.24e-54 179
Msa1297390 MtrunA17_Chr4g0033391 39.032 310 135 7 5 271 24 322 2.30e-50 168
Msa1297390 MtrunA17_Chr2g0307141 38.439 346 125 11 5 270 23 360 1.02e-47 162
Msa1297390 MtrunA17_Chr4g0054581 39.058 361 120 17 5 270 24 379 3.50e-47 161
Msa1297390 MtrunA17_Chr4g0033291 38.485 330 115 11 5 270 24 329 1.59e-44 153
Msa1297390 MtrunA17_Chr4g0033281 36.646 322 128 9 5 269 23 325 2.14e-40 142
Msa1297390 MtrunA17_Chr5g0400621 46.939 147 69 2 132 269 187 333 3.65e-31 118
Msa1297390 MtrunA17_Chr6g0468461 36.184 304 116 15 5 245 23 311 2.07e-30 116
Msa1297390 MtrunA17_Chr7g0225901 37.900 219 90 8 64 245 31 240 3.32e-29 111
Msa1297390 MtrunA17_Chr5g0400641 48.462 130 56 3 132 251 28 156 2.27e-28 106
Msa1297390 MtrunA17_Chr4g0002801 32.632 190 87 4 93 266 167 331 8.64e-21 90.1
Msa1297390 MtrunA17_Chr4g0054561 36.029 136 80 1 132 260 185 320 4.90e-19 85.1
Msa1297390 MtrunA17_Chr2g0280161 34.014 147 87 3 132 268 207 353 1.27e-18 84.3
Msa1297390 MtrunA17_Chr5g0400661 31.313 198 84 6 93 265 164 334 1.27e-18 84.0
Msa1297390 MtrunA17_Chr4g0002831 33.784 148 77 4 126 263 66 202 4.26e-17 77.8
Msa1297390 MtrunA17_Chr4g0049331 32.215 149 92 2 129 268 162 310 1.04e-16 78.6
Msa1297390 MtrunA17_Chr2g0333641 34.058 138 80 4 132 260 167 302 1.78e-16 77.8
Msa1297390 MtrunA17_Chr4g0054551 32.353 136 85 1 132 260 185 320 2.12e-16 77.8
Msa1297390 MtrunA17_Chr7g0233441 34.483 145 74 4 129 263 61 194 6.22e-16 74.3
Msa1297390 MtrunA17_Chr4g0002781 33.784 148 84 3 132 266 204 350 6.39e-16 76.6
Msa1297390 MtrunA17_Chr2g0333621 28.421 190 96 5 93 269 153 315 3.54e-15 73.9
Msa1297390 MtrunA17_Chr4g0002851 34.752 141 71 4 129 263 69 194 1.60e-14 70.5
Msa1297390 MtrunA17_Chr2g0333611 27.354 223 110 7 85 267 7 217 1.77e-14 70.9
Msa1297390 MtrunA17_Chr5g0400671 29.286 140 93 1 132 265 184 323 2.22e-14 72.0
Msa1297390 MtrunA17_Chr4g0054571 32.258 155 83 3 132 267 180 331 1.71e-13 69.3
Msa1297390 MtrunA17_Chr8g0336681 28.108 185 93 4 93 261 171 331 7.18e-13 67.8
Msa1297390 MtrunA17_Chr2g0333541 41.573 89 45 2 189 271 187 274 3.07e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1297390 AT2G22760.1 35.570 149 79 5 132 265 149 295 1.81e-19 86.3
Msa1297390 AT2G22760.2 35.156 128 67 4 132 245 149 274 1.97e-14 72.0
Msa1297390 AT4G37850.2 30.872 149 89 4 132 268 182 328 1.34e-12 67.0
Msa1297390 AT4G37850.1 30.872 149 89 4 132 268 182 328 1.34e-12 67.0
Msa1297390 AT2G22770.1 28.205 156 88 4 132 263 162 317 1.40e-12 67.0

Find 46 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGAAATCCATTATGATTT+TGG 0.102337 8_3:+57655789 None:intergenic
ACGCTGATAACCCATAAAAT+TGG 0.197823 8_3:+57658948 None:intergenic
ATGCTGCCATGCGTAGGTTT+TGG 0.256145 8_3:+57655548 None:intergenic
GATGGACAAGACTTCAATAT+TGG 0.295753 8_3:-57656026 Msa1297390:intron
CCATAAAATTGGGTTGGGTT+TGG 0.308294 8_3:+57658959 None:intergenic
CAAAGAATTTAAAGAGCGTT+TGG 0.344136 8_3:-57655984 Msa1297390:CDS
TGTCGTCAATAACAATGTTA+TGG 0.377578 8_3:-57655729 Msa1297390:CDS
ATCCAATGCCAAAATCATAA+TGG 0.388524 8_3:-57655797 Msa1297390:CDS
ATAACAATGTTATGGCCCTT+GGG 0.410525 8_3:-57655721 Msa1297390:CDS
CGCTGATAACCCATAAAATT+GGG 0.416638 8_3:+57658949 None:intergenic
GGTCTGTGTCTGTTCCTCTA+AGG 0.419045 8_3:+57659144 None:intergenic
ATAACCCATAAAATTGGGTT+GGG 0.425291 8_3:+57658954 None:intergenic
AGGCTACAACTTGACCATAA+AGG 0.431305 8_3:-57655578 Msa1297390:CDS
AATAACAATGTTATGGCCCT+TGG 0.435181 8_3:-57655722 Msa1297390:CDS
TCAGCGTCATTGCCAGAGTT+AGG 0.436685 8_3:-57658932 Msa1297390:CDS
AAATTTGTGTTTCCTAACTC+TGG 0.446748 8_3:+57658920 None:intergenic
TACTCTTAGCAAGGAAGAAA+CGG 0.451484 8_3:-57659086 Msa1297390:CDS
CTGGAAAACATATCTTGATT+CGG 0.463404 8_3:-57655820 Msa1297390:CDS
AACGTGGAAGCAAAAGTGTC+TGG 0.469222 8_3:-57655839 Msa1297390:CDS
ATCCTTTACCTCAGCAATGA+TGG 0.474722 8_3:+57655679 None:intergenic
TCAGTTTCACAACAGAGGTC+TGG 0.484300 8_3:+57655899 None:intergenic
TATTAATTTGCAGGAAATGG+TGG 0.500169 8_3:-57659230 Msa1297390:intron
GATAACCCATAAAATTGGGT+TGG 0.506362 8_3:+57658953 None:intergenic
TTCTTCCTTGCTAAGAGTAG+AGG 0.512428 8_3:+57659090 None:intergenic
GTCAAAAGACATAATTTGAA+AGG 0.514398 8_3:+57658985 None:intergenic
TTCCACGTTGATGAGTGATT+CGG 0.527891 8_3:+57655853 None:intergenic
CACTTTCAGTTTCACAACAG+AGG 0.563363 8_3:+57655894 None:intergenic
CATTTCCTCTACTCTTAGCA+AGG 0.565542 8_3:-57659095 Msa1297390:CDS
TAACAATGTTATGGCCCTTG+GGG 0.572849 8_3:-57655720 Msa1297390:CDS
CACGTTGATGAGTGATTCGG+TGG 0.575405 8_3:+57655856 None:intergenic
ATTATTGTATAGATTGGCGA+AGG 0.585734 8_3:-57655598 Msa1297390:intron
CTGAGTCAAACATTGTTGCA+TGG 0.587333 8_3:+57659123 None:intergenic
AGAAGAGGGGAAGAAATCAA+AGG 0.590831 8_3:-57655951 Msa1297390:CDS
CACAATCTGTGTCATGTGAA+AGG 0.591624 8_3:+57659173 None:intergenic
ACTTCAATGCTGCCATGCGT+AGG 0.592406 8_3:+57655542 None:intergenic
AAAAGACATAATTTGAAAGG+AGG 0.613846 8_3:+57658988 None:intergenic
CATGCAACAATGTTTGACTC+AGG 0.621521 8_3:-57659122 Msa1297390:CDS
ATCAAAGGAAGATCAGTCGA+TGG 0.644964 8_3:-57655936 Msa1297390:CDS
TGTCGACGATAGAATCCCCA+AGG 0.650856 8_3:+57655705 None:intergenic
CGACATTACCATCATTGCTG+AGG 0.653958 8_3:-57655687 Msa1297390:intron
AAAGGAAGATCAGTCGATGG+TGG 0.662321 8_3:-57655933 Msa1297390:CDS
ACTCGTCCAAAACCTACGCA+TGG 0.666381 8_3:-57655554 Msa1297390:CDS
ATACAACTTATTTGACGAGG+AGG 0.673794 8_3:-57659203 Msa1297390:CDS
TGAATACAACTTATTTGACG+AGG 0.701979 8_3:-57659206 Msa1297390:CDS
GTCGACGATAGAATCCCCAA+GGG 0.728713 8_3:+57655706 None:intergenic
CACCGAATCACTCATCAACG+TGG 0.739553 8_3:-57655855 Msa1297390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAATTTTCAATTATTTATT+GGG + chr8_3:57656656-57656675 None:intergenic 10.0%
!!! TTGAATTTTCAATTATTTAT+TGG + chr8_3:57656657-57656676 None:intergenic 10.0%
!!! TTGTTAGTTATTTTATTATA+TGG + chr8_3:57656864-57656883 None:intergenic 10.0%
!!! GTTATTATTTTTTTTATAGA+GGG + chr8_3:57657251-57657270 None:intergenic 10.0%
!!! TGTTATTATTTTTTTTATAG+AGG + chr8_3:57657252-57657271 None:intergenic 10.0%
!! AGTATAACTTATAAGATAAA+AGG + chr8_3:57655681-57655700 None:intergenic 15.0%
!!! AACTTTTCACAAAAATATTA+TGG - chr8_3:57655953-57655972 Msa1297390:CDS 15.0%
!!! CTTTTTATTCTTTTTTTTAG+AGG + chr8_3:57656701-57656720 None:intergenic 15.0%
!! TTACAAAGAAAACTATATAT+TGG + chr8_3:57657080-57657099 None:intergenic 15.0%
!!! TAGTTTTCTTTGTAAAAATA+TGG - chr8_3:57657085-57657104 Msa1297390:intron 15.0%
!!! ATACAAAAGTGTATATAATA+CGG + chr8_3:57657169-57657188 None:intergenic 15.0%
!!! ATTAGGATTAATTATAGTTT+TGG - chr8_3:57657366-57657385 Msa1297390:intron 15.0%
!! AAGTTACATGATTATATTAA+AGG - chr8_3:57657660-57657679 Msa1297390:intron 15.0%
!!! ACATTTAAAGTTAAAGTTAA+CGG + chr8_3:57657802-57657821 None:intergenic 15.0%
!! TTAAAAATTAATAGGATCTA+TGG + chr8_3:57657855-57657874 None:intergenic 15.0%
!!! TTCTTTGATTATTAATTTGC+AGG - chr8_3:57655739-57655758 Msa1297390:CDS 20.0%
!!! TTTTTTTGAAGATCTTTTTG+AGG + chr8_3:57656095-57656114 None:intergenic 20.0%
!! ATAGTTGTACAAATATCTAA+GGG + chr8_3:57656976-57656995 None:intergenic 20.0%
!! AATAGTTGTACAAATATCTA+AGG + chr8_3:57656977-57656996 None:intergenic 20.0%
!! AGAAAGGTAAAAATATAATG+CGG + chr8_3:57657035-57657054 None:intergenic 20.0%
!! CCTAATAAATAAAGTGATAT+GGG + chr8_3:57657352-57657371 None:intergenic 20.0%
!! TCCTAATAAATAAAGTGATA+TGG + chr8_3:57657353-57657372 None:intergenic 20.0%
!!! GATTCGTTATTGTTTTTTAT+AGG - chr8_3:57657548-57657567 Msa1297390:intron 20.0%
!! ATGAAAACAACAAATTAGTT+AGG + chr8_3:57658849-57658868 None:intergenic 20.0%
!!! TCGTTGATTTTAAAACTTAT+GGG + chr8_3:57658820-57658839 None:intergenic 20.0%
!!! ATCGTTGATTTTAAAACTTA+TGG + chr8_3:57658819-57658838 None:intergenic 20.0%
!!! AAGTTTTAAAATCAACGATT+TGG - chr8_3:57657737-57657756 Msa1297390:intron 20.0%
!! TTAACTTTAAATGTCTAAAG+TGG - chr8_3:57657808-57657827 Msa1297390:intron 20.0%
!!! TTTTTTTAAACAATGACCAT+TGG - chr8_3:57657895-57657914 Msa1297390:intron 20.0%
!! AAAAGTGAAAAAATTAGAAG+TGG + chr8_3:57658094-57658113 None:intergenic 20.0%
!! TATACTGTCAAAAAAAAAAG+AGG - chr8_3:57658259-57658278 Msa1297390:intron 20.0%
!! AAATCTCAAAAACAAAATCT+AGG - chr8_3:57658303-57658322 Msa1297390:intron 20.0%
!! AAAACTGAAGTAAAAATTGA+GGG - chr8_3:57658791-57658810 Msa1297390:intron 20.0%
!!! AAGTTTTAAAATCAACGATT+TGG + chr8_3:57657737-57657756 None:intergenic 20.0%
!!! ATCGTTGATTTTAAAACTTA+TGG - chr8_3:57658819-57658838 Msa1297390:intron 20.0%
!!! TCGTTGATTTTAAAACTTAT+GGG - chr8_3:57658820-57658839 Msa1297390:intron 20.0%
!!! CTAATTTGTTGTTTTCATTT+TGG + chr8_3:57657708-57657727 None:intergenic 20.0%
!! ATGAAAACAACAAATTAGTT+AGG - chr8_3:57658849-57658868 Msa1297390:CDS 20.0%
!! TGAAAACAACAAATTAGTTA+GGG - chr8_3:57658850-57658869 Msa1297390:CDS 20.0%
!!! CTAATAAACAGATTTTACAT+CGG + chr8_3:57658933-57658952 None:intergenic 20.0%
!! TGTAAAATCTGTTTATTAGA+TGG - chr8_3:57658934-57658953 Msa1297390:CDS 20.0%
!!! TTCTTTTTACTTCAATGAAA+AGG - chr8_3:57659323-57659342 Msa1297390:intron 20.0%
! ATGCATTTGAAAGATAAGAA+GGG + chr8_3:57655582-57655601 None:intergenic 25.0%
! TATGCATTTGAAAGATAAGA+AGG + chr8_3:57655583-57655602 None:intergenic 25.0%
! CAGAATCAAATGCTATATTA+AGG + chr8_3:57655655-57655674 None:intergenic 25.0%
!!! GATTATTAATTTGCAGGAAA+TGG - chr8_3:57655745-57655764 Msa1297390:CDS 25.0%
! AAAAGACATAATTTGAAAGG+AGG + chr8_3:57655993-57656012 None:intergenic 25.0%
! GTCAAAAGACATAATTTGAA+AGG + chr8_3:57655996-57656015 None:intergenic 25.0%
! CAAAAAAATCAAAAGCAAAG+AGG - chr8_3:57656107-57656126 Msa1297390:intron 25.0%
!! TGTATTGACCTAATCAAAAT+TGG + chr8_3:57657320-57657339 None:intergenic 25.0%
!! CCCATATCACTTTATTTATT+AGG - chr8_3:57657349-57657368 Msa1297390:intron 25.0%
!! TCTGACTTTCTATTTTCATA+GGG + chr8_3:57657425-57657444 None:intergenic 25.0%
!! ATCTGACTTTCTATTTTCAT+AGG + chr8_3:57657426-57657445 None:intergenic 25.0%
! TAAAGGCTTAATTCGATATT+TGG - chr8_3:57657677-57657696 Msa1297390:intron 25.0%
! AAAATTAATAGGATCTATGG+TGG + chr8_3:57657852-57657871 None:intergenic 25.0%
!! AGATGAATTTCTGGAAAATA+AGG + chr8_3:57658050-57658069 None:intergenic 25.0%
! TGATGTAGTTTATTGATGAA+TGG + chr8_3:57658227-57658246 None:intergenic 25.0%
! TCAAAAACAAAATCTAGGTT+CGG - chr8_3:57658308-57658327 Msa1297390:intron 25.0%
!! TATAAAGTTTTGCACAAACT+GGG + chr8_3:57658471-57658490 None:intergenic 25.0%
!!! TTTGGGTTTTTGAGATTAAT+GGG + chr8_3:57658609-57658628 None:intergenic 25.0%
!!! ATTTGGGTTTTTGAGATTAA+TGG + chr8_3:57658610-57658629 None:intergenic 25.0%
! GAAAACTGAAGTAAAAATTG+AGG - chr8_3:57658790-57658809 Msa1297390:intron 25.0%
! GAAAACAACAAATTAGTTAG+GGG - chr8_3:57658851-57658870 Msa1297390:CDS 25.0%
! TATAGGCTTAATTCGATATT+TGG + chr8_3:57658878-57658897 None:intergenic 25.0%
!! CAAGAAATCCATTATGATTT+TGG + chr8_3:57659192-57659211 None:intergenic 25.0%
! CTTCTCATTATTGTATAGAT+TGG - chr8_3:57659374-57659393 Msa1297390:intron 25.0%
!! TATTAATTTGCAGGAAATGG+TGG - chr8_3:57655748-57655767 Msa1297390:CDS 30.0%
TGAATACAACTTATTTGACG+AGG - chr8_3:57655772-57655791 Msa1297390:intron 30.0%
ATAACCCATAAAATTGGGTT+GGG + chr8_3:57656027-57656046 None:intergenic 30.0%
AAATTTGTGTTTCCTAACTC+TGG + chr8_3:57656061-57656080 None:intergenic 30.0%
TCAAGCTCAAGATAATGTTA+AGG - chr8_3:57656138-57656157 Msa1297390:intron 30.0%
ATAGTACGTATACCTTCATT+AGG + chr8_3:57656228-57656247 None:intergenic 30.0%
GAAATGACTGGATCAAAATT+TGG + chr8_3:57656393-57656412 None:intergenic 30.0%
!! CTCTAACGTTATTTTACACA+TGG + chr8_3:57656556-57656575 None:intergenic 30.0%
TTGTAACAAATGTGTTTGAC+TGG - chr8_3:57656764-57656783 Msa1297390:intron 30.0%
AGCCAAAAACACATAAAGAT+GGG + chr8_3:57656819-57656838 None:intergenic 30.0%
AAGCCAAAAACACATAAAGA+TGG + chr8_3:57656820-57656839 None:intergenic 30.0%
TACCTTTCTCTCTATTACTT+TGG - chr8_3:57657046-57657065 Msa1297390:intron 30.0%
AACCAAAGTAATAGAGAGAA+AGG + chr8_3:57657051-57657070 None:intergenic 30.0%
CCATTTGTTTGACAATCTAA+TGG + chr8_3:57657115-57657134 None:intergenic 30.0%
CCATTAGATTGTCAAACAAA+TGG - chr8_3:57657112-57657131 Msa1297390:intron 30.0%
! ACACTTTTGTATTTTGCATC+AGG - chr8_3:57657177-57657196 Msa1297390:intron 30.0%
TGCAAAAGGGTTAAACTTAT+GGG + chr8_3:57657281-57657300 None:intergenic 30.0%
! ACCTAATCAAAATTGGTCTA+GGG + chr8_3:57657313-57657332 None:intergenic 30.0%
! CTGACTTTCTATTTTCATAG+GGG + chr8_3:57657424-57657443 None:intergenic 30.0%
! CAAAGACTTAATTGCAGTTT+TGG + chr8_3:57657608-57657627 None:intergenic 30.0%
AAAACTGAAGCAAGAATTGA+GGG + chr8_3:57657764-57657783 None:intergenic 30.0%
! TCTTGCTTCAGTTTTCAAAA+AGG - chr8_3:57657769-57657788 Msa1297390:intron 30.0%
AAAGTTAAAGTTAACGGTCT+AGG + chr8_3:57657796-57657815 None:intergenic 30.0%
TTGTGATGAAGATGAATTTC+TGG + chr8_3:57658059-57658078 None:intergenic 30.0%
!! AAAAGGTTGATGAAGGTTTA+AGG + chr8_3:57658139-57658158 None:intergenic 30.0%
ACTGTCAAAAAAAAAAGAGG+AGG - chr8_3:57658262-57658281 Msa1297390:intron 30.0%
! CTATAAAGTTTTGCACAAAC+TGG + chr8_3:57658472-57658491 None:intergenic 30.0%
AAGAATTCGAGAGAAGAAAT+TGG + chr8_3:57658511-57658530 None:intergenic 30.0%
TTGATGTTGTGAAGTAGATT+TGG + chr8_3:57658543-57658562 None:intergenic 30.0%
GATTAAATCAATTTGAGAGG+GGG + chr8_3:57658572-57658591 None:intergenic 30.0%
GGATTAAATCAATTTGAGAG+GGG + chr8_3:57658573-57658592 None:intergenic 30.0%
GGGATTAAATCAATTTGAGA+GGG + chr8_3:57658574-57658593 None:intergenic 30.0%
AGGGATTAAATCAATTTGAG+AGG + chr8_3:57658575-57658594 None:intergenic 30.0%
TTAATGGGATGAATTAGCTA+GGG + chr8_3:57658594-57658613 None:intergenic 30.0%
ATTAATGGGATGAATTAGCT+AGG + chr8_3:57658595-57658614 None:intergenic 30.0%
CTGACAACAATAAAGGATTT+GGG + chr8_3:57658626-57658645 None:intergenic 30.0%
AGTTTGTGCAATTGAATTTC+TGG - chr8_3:57658656-57658675 Msa1297390:intron 30.0%
GTTTGTGCAATTGAATTTCT+GGG - chr8_3:57658657-57658676 Msa1297390:intron 30.0%
TTTGTGCAATTGAATTTCTG+GGG - chr8_3:57658658-57658677 Msa1297390:intron 30.0%
TGGGGAGATTTAATACAAAT+TGG - chr8_3:57658676-57658695 Msa1297390:intron 30.0%
GGGGAGATTTAATACAAATT+GGG - chr8_3:57658677-57658696 Msa1297390:intron 30.0%
GGGAGATTTAATACAAATTG+GGG - chr8_3:57658678-57658697 Msa1297390:intron 30.0%
!! CAAAGAATTTAAAGAGCGTT+TGG - chr8_3:57658994-57659013 Msa1297390:CDS 30.0%
!! TTTGGCAATTTTAGAAGAAG+AGG - chr8_3:57659012-57659031 Msa1297390:CDS 30.0%
!! TTGGCAATTTTAGAAGAAGA+GGG - chr8_3:57659013-57659032 Msa1297390:CDS 30.0%
CTGGAAAACATATCTTGATT+CGG - chr8_3:57659158-57659177 Msa1297390:CDS 30.0%
ATCCAATGCCAAAATCATAA+TGG - chr8_3:57659181-57659200 Msa1297390:CDS 30.0%
!! ATCCATTATGATTTTGGCAT+TGG + chr8_3:57659186-57659205 None:intergenic 30.0%
TGTCGTCAATAACAATGTTA+TGG - chr8_3:57659249-57659268 Msa1297390:intron 30.0%
ATTATTGTATAGATTGGCGA+AGG - chr8_3:57659380-57659399 Msa1297390:intron 30.0%
!! GTTGGTTATTTGACTTGGTA+AGG - chr8_3:57655550-57655569 Msa1297390:CDS 35.0%
CTTGAGAGACATTGCATAAA+TGG - chr8_3:57655699-57655718 Msa1297390:CDS 35.0%
ATACAACTTATTTGACGAGG+AGG - chr8_3:57655775-57655794 Msa1297390:intron 35.0%
! AGATTGTGCATTTTCCTTAG+AGG - chr8_3:57655820-57655839 Msa1297390:CDS 35.0%
TACTCTTAGCAAGGAAGAAA+CGG - chr8_3:57655892-57655911 Msa1297390:CDS 35.0%
!! AGGAAGAAACGGATTTTGAT+CGG - chr8_3:57655903-57655922 Msa1297390:CDS 35.0%
! CAAACCCAACCCAATTTTAT+GGG - chr8_3:57656020-57656039 Msa1297390:intron 35.0%
GATAACCCATAAAATTGGGT+TGG + chr8_3:57656028-57656047 None:intergenic 35.0%
CGCTGATAACCCATAAAATT+GGG + chr8_3:57656032-57656051 None:intergenic 35.0%
ACGCTGATAACCCATAAAAT+TGG + chr8_3:57656033-57656052 None:intergenic 35.0%
ATACCTTCATTAGGTTAGGA+AGG + chr8_3:57656219-57656238 None:intergenic 35.0%
ACGTATACCTTCATTAGGTT+AGG + chr8_3:57656223-57656242 None:intergenic 35.0%
CAGATACTAAGAGAAATGAC+TGG + chr8_3:57656405-57656424 None:intergenic 35.0%
AATGTGTTTGACTGGTGTAA+TGG - chr8_3:57656772-57656791 Msa1297390:intron 35.0%
! ACCCCATCTTTATGTGTTTT+TGG - chr8_3:57656814-57656833 Msa1297390:intron 35.0%
GCCAAAAACACATAAAGATG+GGG + chr8_3:57656818-57656837 None:intergenic 35.0%
GTTGTACAAATATCTAAGGG+CGG + chr8_3:57656973-57656992 None:intergenic 35.0%
ACGCAAGATTGTGATACTTA+GGG + chr8_3:57657222-57657241 None:intergenic 35.0%
AACGCAAGATTGTGATACTT+AGG + chr8_3:57657223-57657242 None:intergenic 35.0%
! GTATCACAATCTTGCGTTTT+TGG - chr8_3:57657225-57657244 Msa1297390:intron 35.0%
GTGCAAAAGGGTTAAACTTA+TGG + chr8_3:57657282-57657301 None:intergenic 35.0%
! GTTTAACCCTTTTGCACTTT+TGG - chr8_3:57657285-57657304 Msa1297390:intron 35.0%
! CTAATCAAAATTGGTCTAGG+GGG + chr8_3:57657311-57657330 None:intergenic 35.0%
! CCTAATCAAAATTGGTCTAG+GGG + chr8_3:57657312-57657331 None:intergenic 35.0%
! GACCTAATCAAAATTGGTCT+AGG + chr8_3:57657314-57657333 None:intergenic 35.0%
TGATTAGGTCAATACATACG+TGG - chr8_3:57657324-57657343 Msa1297390:intron 35.0%
TGCAAAAGAGGGTAAACTTA+GGG - chr8_3:57657521-57657540 Msa1297390:intron 35.0%
! GTATCACAATCTTGCGATTT+TGG + chr8_3:57657577-57657596 None:intergenic 35.0%
GCAAGATTGTGATACTTAGA+GGG - chr8_3:57657582-57657601 Msa1297390:intron 35.0%
GAAAACTGAAGCAAGAATTG+AGG + chr8_3:57657765-57657784 None:intergenic 35.0%
AAGTGGAACTCAAACAATGT+TGG - chr8_3:57657825-57657844 Msa1297390:intron 35.0%
! CGCAGGTCTATTTTATCTTA+TGG - chr8_3:57657922-57657941 Msa1297390:intron 35.0%
ACAACAACAACAATCAATCC+AGG - chr8_3:57658016-57658035 Msa1297390:intron 35.0%
GAAGGTTTAAGGAAGAAGAA+TGG + chr8_3:57658128-57658147 None:intergenic 35.0%
GAATGAAGAAGAAGAAGAAG+TGG + chr8_3:57658184-57658203 None:intergenic 35.0%
AAAATCTAGGTTCGGATTTG+TGG - chr8_3:57658316-57658335 Msa1297390:intron 35.0%
! ACGTTTTTGAATTGGGTTTC+TGG + chr8_3:57658375-57658394 None:intergenic 35.0%
! GGGTTTCACGTTTTTGAATT+GGG + chr8_3:57658382-57658401 None:intergenic 35.0%
! TGGGTTTCACGTTTTTGAAT+TGG + chr8_3:57658383-57658402 None:intergenic 35.0%
! GTTTCTAGAAGTTGGAAAAG+GGG + chr8_3:57658449-57658468 None:intergenic 35.0%
! GGTTTCTAGAAGTTGGAAAA+GGG + chr8_3:57658450-57658469 None:intergenic 35.0%
GAGAGAAGAAATTGGAAAAG+GGG + chr8_3:57658503-57658522 None:intergenic 35.0%
CGAGAGAAGAAATTGGAAAA+GGG + chr8_3:57658504-57658523 None:intergenic 35.0%
TCGAGAGAAGAAATTGGAAA+AGG + chr8_3:57658505-57658524 None:intergenic 35.0%
CCTGACAACAATAAAGGATT+TGG + chr8_3:57658627-57658646 None:intergenic 35.0%
CCAAATCCTTTATTGTTGTC+AGG - chr8_3:57658624-57658643 Msa1297390:intron 35.0%
GATTAACGACAGTTACTTGT+TGG - chr8_3:57658750-57658769 Msa1297390:intron 35.0%
GATGGACAAGACTTCAATAT+TGG - chr8_3:57658952-57658971 Msa1297390:CDS 35.0%
!! TGGCAATTTTAGAAGAAGAG+GGG - chr8_3:57659014-57659033 Msa1297390:CDS 35.0%
AATAACAATGTTATGGCCCT+TGG - chr8_3:57659256-57659275 Msa1297390:intron 35.0%
ATAACAATGTTATGGCCCTT+GGG - chr8_3:57659257-57659276 Msa1297390:intron 35.0%
TATTATCACCAGACAGCAGT+TGG - chr8_3:57655532-57655551 Msa1297390:CDS 40.0%
TCAAATAACCAACTGCTGTC+TGG + chr8_3:57655543-57655562 None:intergenic 40.0%
CAGCAGTTGGTTATTTGACT+TGG - chr8_3:57655545-57655564 Msa1297390:CDS 40.0%
CACAATCTGTGTCATGTGAA+AGG + chr8_3:57655808-57655827 None:intergenic 40.0%
CTGAGTCAAACATTGTTGCA+TGG + chr8_3:57655858-57655877 None:intergenic 40.0%
CATGCAACAATGTTTGACTC+AGG - chr8_3:57655856-57655875 Msa1297390:CDS 40.0%
CATTTCCTCTACTCTTAGCA+AGG - chr8_3:57655883-57655902 Msa1297390:CDS 40.0%
TTCTTCCTTGCTAAGAGTAG+AGG + chr8_3:57655891-57655910 None:intergenic 40.0%
!! CCATAAAATTGGGTTGGGTT+TGG + chr8_3:57656022-57656041 None:intergenic 40.0%
! CCAAACCCAACCCAATTTTA+TGG - chr8_3:57656019-57656038 Msa1297390:CDS 40.0%
! TGCAAGAGCAATGAAGCATT+GGG + chr8_3:57656191-57656210 None:intergenic 40.0%
TCTCCTTCCTAACCTAATGA+AGG - chr8_3:57656213-57656232 Msa1297390:intron 40.0%
CACACATGCGCTTAATAATG+TGG - chr8_3:57656456-57656475 Msa1297390:intron 40.0%
AAATATCTAAGGGCGGAGTT+AGG + chr8_3:57656966-57656985 None:intergenic 40.0%
GCAAGATTGTGATACTTAGG+GGG + chr8_3:57657220-57657239 None:intergenic 40.0%
CGCAAGATTGTGATACTTAG+GGG + chr8_3:57657581-57657600 None:intergenic 40.0%
!!! CCCCTAGACCAATTTTGATT+AGG - chr8_3:57657309-57657328 Msa1297390:intron 40.0%
TCGCAAGATTGTGACACTTA+GGG + chr8_3:57657394-57657413 None:intergenic 40.0%
ATCGCAAGATTGTGACACTT+AGG + chr8_3:57657395-57657414 None:intergenic 40.0%
CATCCACATCACTTAAAGTG+AGG + chr8_3:57657455-57657474 None:intergenic 40.0%
!! TGCATTGACTCGGTCAAAAT+TGG - chr8_3:57657482-57657501 Msa1297390:intron 40.0%
! GTGGTCAAAAGTGCAAAAGA+GGG - chr8_3:57657510-57657529 Msa1297390:intron 40.0%
GTGCAAAAGAGGGTAAACTT+AGG - chr8_3:57657520-57657539 Msa1297390:intron 40.0%
GCAAAAGAGGGTAAACTTAG+GGG - chr8_3:57657522-57657541 Msa1297390:intron 40.0%
CAAAAGAGGGTAAACTTAGG+GGG - chr8_3:57657523-57657542 Msa1297390:intron 40.0%
CGCAAGATTGTGATACTTAG+AGG - chr8_3:57657581-57657600 Msa1297390:intron 40.0%
AATAGACCTGCGAAATCCAA+TGG + chr8_3:57657914-57657933 None:intergenic 40.0%
GAAGATGATGAAGAAGAGTG+AGG + chr8_3:57657992-57658011 None:intergenic 40.0%
GAAAATAAGGACTGCATTCC+TGG + chr8_3:57658037-57658056 None:intergenic 40.0%
TGGATCGAACTAGAAGGAAA+GGG + chr8_3:57658164-57658183 None:intergenic 40.0%
AAGAAGTGGATCGAACTAGA+AGG + chr8_3:57658170-57658189 None:intergenic 40.0%
!!! GTTTCTGGTTCAAGTTTTGC+TGG + chr8_3:57658360-57658379 None:intergenic 40.0%
! ATGTTTTCACGTTGTCGAAC+TGG + chr8_3:57658410-57658429 None:intergenic 40.0%
! GGGTTTCTAGAAGTTGGAAA+AGG + chr8_3:57658451-57658470 None:intergenic 40.0%
! CAAACTGGGTTTCTAGAAGT+TGG + chr8_3:57658457-57658476 None:intergenic 40.0%
CCTCATCCTGACAACAATAA+AGG + chr8_3:57658633-57658652 None:intergenic 40.0%
CCTTTATTGTTGTCAGGATG+AGG - chr8_3:57658630-57658649 Msa1297390:intron 40.0%
CGAGAACAAACGCAATTTGA+CGG - chr8_3:57658723-57658742 Msa1297390:intron 40.0%
! AACGACAGTTACTTGTTGGA+CGG - chr8_3:57658754-57658773 Msa1297390:intron 40.0%
AGAAGAGGGGAAGAAATCAA+AGG - chr8_3:57659027-57659046 Msa1297390:CDS 40.0%
ATCAAAGGAAGATCAGTCGA+TGG - chr8_3:57659042-57659061 Msa1297390:CDS 40.0%
CACTTTCAGTTTCACAACAG+AGG + chr8_3:57659087-57659106 None:intergenic 40.0%
! TTCCACGTTGATGAGTGATT+CGG + chr8_3:57659128-57659147 None:intergenic 40.0%
TAACAATGTTATGGCCCTTG+GGG - chr8_3:57659258-57659277 Msa1297390:intron 40.0%
TACCATCATTGCTGAGGTAA+AGG - chr8_3:57659297-57659316 Msa1297390:intron 40.0%
ATCCTTTACCTCAGCAATGA+TGG + chr8_3:57659302-57659321 None:intergenic 40.0%
AGGCTACAACTTGACCATAA+AGG - chr8_3:57659400-57659419 Msa1297390:intron 40.0%
!! GTTTTGGACGAGTTCCTTTA+TGG + chr8_3:57659417-57659436 None:intergenic 40.0%
CTGCAAGAGCAATGAAGCAT+TGG + chr8_3:57656192-57656211 None:intergenic 45.0%
GTATCCAAGACACTGGATCA+GGG - chr8_3:57656278-57656297 Msa1297390:intron 45.0%
TATCCAAGACACTGGATCAG+GGG - chr8_3:57656279-57656298 Msa1297390:intron 45.0%
GCAAGATTGTGACACTTAGG+GGG + chr8_3:57657392-57657411 None:intergenic 45.0%
CGCAAGATTGTGACACTTAG+GGG + chr8_3:57657393-57657412 None:intergenic 45.0%
GCACCTCACTTTAAGTGATG+TGG - chr8_3:57657449-57657468 Msa1297390:intron 45.0%
!! ATGACACGCATGCATTGACT+CGG - chr8_3:57657472-57657491 Msa1297390:intron 45.0%
!! TGACTCGGTCAAAATTGGTC+TGG - chr8_3:57657487-57657506 Msa1297390:intron 45.0%
! GACTCGGTCAAAATTGGTCT+GGG - chr8_3:57657488-57657507 Msa1297390:intron 45.0%
! GGTGGTCAAAAGTGCAAAAG+AGG - chr8_3:57657509-57657528 Msa1297390:intron 45.0%
CAATGACCATTGGATTTCGC+AGG - chr8_3:57657905-57657924 Msa1297390:intron 45.0%
!! AAGGGGGAAAAGGTTGATGA+AGG + chr8_3:57658146-57658165 None:intergenic 45.0%
ACTAGAAGGAAAGGGGGAAA+AGG + chr8_3:57658156-57658175 None:intergenic 45.0%
GATCGAACTAGAAGGAAAGG+GGG + chr8_3:57658162-57658181 None:intergenic 45.0%
GGATCGAACTAGAAGGAAAG+GGG + chr8_3:57658163-57658182 None:intergenic 45.0%
GTGGATCGAACTAGAAGGAA+AGG + chr8_3:57658165-57658184 None:intergenic 45.0%
! ACGTTGTCGAACTGGTTTCT+GGG + chr8_3:57658402-57658421 None:intergenic 45.0%
! CAGTTACTTGTTGGACGGAA+AGG - chr8_3:57658759-57658778 Msa1297390:intron 45.0%
AAAGGAAGATCAGTCGATGG+TGG - chr8_3:57659045-57659064 Msa1297390:CDS 45.0%
TCAGTTTCACAACAGAGGTC+TGG + chr8_3:57659082-57659101 None:intergenic 45.0%
!! AACGTGGAAGCAAAAGTGTC+TGG - chr8_3:57659139-57659158 Msa1297390:CDS 45.0%
CGACATTACCATCATTGCTG+AGG - chr8_3:57659291-57659310 Msa1297390:intron 45.0%
!! GTTTAAATTTAAAAATTAAT+AGG + chr8_3:57657863-57657882 None:intergenic 5.0%
!! TTTAAAAAAAATAAATCAAA+CGG + chr8_3:57657885-57657904 None:intergenic 5.0%
!! AAATTAAAGTAATTTAATAT+AGG + chr8_3:57658895-57658914 None:intergenic 5.0%
GGTCTGTGTCTGTTCCTCTA+AGG + chr8_3:57655837-57655856 None:intergenic 50.0%
TCAGCGTCATTGCCAGAGTT+AGG - chr8_3:57656046-57656065 Msa1297390:intron 50.0%
CGTATCCAAGACACTGGATC+AGG - chr8_3:57656277-57656296 Msa1297390:intron 50.0%
! TGGTGTTGAAGGTGTGCATC+TGG + chr8_3:57656943-57656962 None:intergenic 50.0%
TATCTAAGGGCGGAGTTAGG+TGG + chr8_3:57656963-57656982 None:intergenic 50.0%
! AGGGGGCCAAAAGTGCAAAA+GGG + chr8_3:57657294-57657313 None:intergenic 50.0%
! TAGGGGGCCAAAAGTGCAAA+AGG + chr8_3:57657295-57657314 None:intergenic 50.0%
! TCGGTCAAAATTGGTCTGGG+TGG - chr8_3:57657491-57657510 Msa1297390:intron 50.0%
! CACGTTGTCGAACTGGTTTC+TGG + chr8_3:57658403-57658422 None:intergenic 50.0%
! CACGTTGATGAGTGATTCGG+TGG + chr8_3:57659125-57659144 None:intergenic 50.0%
CACCGAATCACTCATCAACG+TGG - chr8_3:57659123-57659142 Msa1297390:CDS 50.0%
GTCGACGATAGAATCCCCAA+GGG + chr8_3:57659275-57659294 None:intergenic 50.0%
TGTCGACGATAGAATCCCCA+AGG + chr8_3:57659276-57659295 None:intergenic 50.0%
ACTCGTCCAAAACCTACGCA+TGG - chr8_3:57659424-57659443 Msa1297390:intron 50.0%
! ATGCTGCCATGCGTAGGTTT+TGG + chr8_3:57659433-57659452 None:intergenic 50.0%
ACTTCAATGCTGCCATGCGT+AGG + chr8_3:57659439-57659458 None:intergenic 50.0%
GCAGTGCGTATCCAAGACAC+TGG - chr8_3:57656271-57656290 Msa1297390:intron 55.0%
! GCGGAGTTAGGTGGTGTTGA+AGG + chr8_3:57656954-57656973 None:intergenic 55.0%
GCGCCCCTGATCCAGTGTCT+TGG + chr8_3:57656285-57656304 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 57655525 57659475 57655525 ID=Msa1297390;Name=Msa1297390
chr8_3 mRNA 57655525 57659475 57655525 ID=Msa1297390-mRNA-1;Parent=Msa1297390;Name=Msa1297390-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|0.8|0.5|0.6|5|0|271
chr8_3 exon 57659470 57659475 57659470 ID=Msa1297390-mRNA-1:exon:16518;Parent=Msa1297390-mRNA-1
chr8_3 exon 57658847 57659239 57658847 ID=Msa1297390-mRNA-1:exon:16517;Parent=Msa1297390-mRNA-1
chr8_3 exon 57655790 57656038 57655790 ID=Msa1297390-mRNA-1:exon:16516;Parent=Msa1297390-mRNA-1
chr8_3 exon 57655688 57655771 57655688 ID=Msa1297390-mRNA-1:exon:16515;Parent=Msa1297390-mRNA-1
chr8_3 exon 57655525 57655608 57655525 ID=Msa1297390-mRNA-1:exon:16514;Parent=Msa1297390-mRNA-1
chr8_3 CDS 57659470 57659475 57659470 ID=Msa1297390-mRNA-1:cds;Parent=Msa1297390-mRNA-1
chr8_3 CDS 57658847 57659239 57658847 ID=Msa1297390-mRNA-1:cds;Parent=Msa1297390-mRNA-1
chr8_3 CDS 57655790 57656038 57655790 ID=Msa1297390-mRNA-1:cds;Parent=Msa1297390-mRNA-1
chr8_3 CDS 57655688 57655771 57655688 ID=Msa1297390-mRNA-1:cds;Parent=Msa1297390-mRNA-1
chr8_3 CDS 57655525 57655608 57655525 ID=Msa1297390-mRNA-1:cds;Parent=Msa1297390-mRNA-1
Gene Sequence

>Msa1297390

ATGAACGAAATGGTGGATGAATACAACTTATTTGACGAGGAGGATAAGTTCCTTTCACATGACACAGATTGTGCATTTTCCTTAGAGGAACAGACACAGACCATGCAACAATGTTTGACTCAGGAATGCATTTCCTCTACTCTTAGCAAGGAAGAAACGGATTTTGATCGGTGTTCTGAGCTCGACAACATTGCACAAAACTTTTCACAAAAATATTATGGATCTTCATCATCGTCCTCCTTTCAAATTATGTCTTTTGACAATCCAAACCCAACCCAATTTTATGGGTTATCAGCGTCATTGCCAGAGTTAGGAAACACAAATTTTTCAACTCGAACCTCAAAAAGATCTTCAAAAAAATCAAAAGCAAAGAGGTCTCTCGATCAAGCTCAAGATAATACTTCAATATTGGAAGATACGATCAAATGCATCAAAGAATTTAAAGAGCGTTTGGCAATTTTAGAAGAAGAGGGGAAGAAATCAAAGGAAGATCAGTCGATGGTGGTTTCGAATAAACCAGACCTCTGTTGTGAAACTGAAAGTGTTGCTGATGAAACTGCCACCGAATCACTCATCAACGTGGAAGCAAAAGTGTCTGGAAAACATATCTTGATTCGGATCCAATGCCAAAATCATAATGGATTTCTTATTCAAAATTATCAACTATTTGTCGTCAATAACAATGTTATGGCCCTTGGGGATTCTATCGTCGACATTACCATCATTGCTGAGATTGGCGAAGGCTACAACTTGACCATAAAGGAACTCGTCCAAAACCTACGCATGGCAGCATTGAAGTTTATGTCATCAAATTAG

Protein sequence

>Msa1297390

MNEMVDEYNLFDEEDKFLSHDTDCAFSLEEQTQTMQQCLTQECISSTLSKEETDFDRCSELDNIAQNFSQKYYGSSSSSSFQIMSFDNPNPTQFYGLSASLPELGNTNFSTRTSKRSSKKSKAKRSLDQAQDNTSILEDTIKCIKEFKERLAILEEEGKKSKEDQSMVVSNKPDLCCETESVADETATESLINVEAKVSGKHILIRIQCQNHNGFLIQNYQLFVVNNNVMALGDSIVDITIIAEIGEGYNLTIKELVQNLRMAALKFMSSN*