AlfalfaGEDB | Msa1069010

M. sativa cultivar zhongmu-4 / Msa1069010

KEGG: -
GO: -
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069010	XP_003624333.2	95.681	764	33	0	1	764	22	785	0.0	1475

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069010	sp\|Q9SIT1\|TMK3_ARATH	38.796	781	395	20	5	720	29	791	9.34e-149	463

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069010	G7KUA1	95.681	764	33	0	1	764	22	785	0.0	1475

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0063540	Msa1069010	0.820318	7.307827e-53	-8.615850e-47
Msa0163340	Msa1069010	0.807936	3.962360e-50	-8.615850e-47
Msa0299030	Msa1069010	0.820707	5.948235e-53	-8.615850e-47
Msa0326770	Msa1069010	0.809503	1.832330e-50	-8.615850e-47
Msa0366510	Msa1069010	0.803034	4.226158e-49	-8.615850e-47
Msa0391270	Msa1069010	0.806415	8.317086e-50	-8.615850e-47
Msa0401500	Msa1069010	0.801248	9.850098e-49	-8.615850e-47
Msa0439000	Msa1069010	0.801406	9.138796e-49	-8.615850e-47
Msa0464310	Msa1069010	0.805704	1.173700e-49	-8.615850e-47
Msa0548790	Msa1069010	0.800600	1.335395e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069010	MtrunA17_Chr7g0250741	95.681	764	33	0	1	764	22	785	0.0	1475
Msa1069010	MtrunA17_Chr4g0022331	78.170	765	161	5	1	764	24	783	0.0	1182
Msa1069010	MtrunA17_Chr7g0250931	59.536	776	292	8	6	764	29	799	0.0	844
Msa1069010	MtrunA17_Chr3g0121971	74.353	425	107	2	2	426	28	450	0.0	614
Msa1069010	MtrunA17_Chr3g0121971	40.000	230	124	8	508	729	578	801	7.45e-38	152
Msa1069010	MtrunA17_Chr7g0238401	52.188	617	260	13	158	764	1	592	0.0	558
Msa1069010	MtrunA17_Chr8g0377951	58.548	427	174	2	1	426	17	441	8.43e-166	504
Msa1069010	MtrunA17_Chr8g0377951	39.726	219	121	7	508	720	562	775	4.35e-38	153
Msa1069010	MtrunA17_Chr1g0212821	70.029	347	93	5	446	784	14	357	1.55e-164	483
Msa1069010	MtrunA17_Chr7g0251071	72.107	337	89	4	429	764	273	605	4.91e-164	491

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069010	AT2G01820.1	38.796	781	395	20	5	720	29	791	9.49e-150	463
Msa1069010	AT3G23750.1	51.869	428	196	6	3	426	23	444	1.98e-140	439
Msa1069010	AT3G23750.1	40.000	220	119	7	508	720	571	784	3.06e-37	151
Msa1069010	AT1G24650.1	35.777	791	458	22	17	777	36	806	6.64e-136	426
Msa1069010	AT4G18250.1	51.471	340	140	7	432	764	288	609	7.43e-106	341
Msa1069010	AT1G70250.1	54.079	331	127	8	439	764	401	711	1.40e-105	343
Msa1069010	AT5G38280.1	59.328	268	101	4	501	764	319	582	5.18e-103	333
Msa1069010	AT1G66150.1	45.755	424	220	6	6	426	28	444	7.14e-103	339
Msa1069010	AT1G66150.1	38.356	219	124	7	508	720	581	794	4.76e-37	150
Msa1069010	AT5G38280.2	59.328	268	101	4	501	764	319	582	7.81e-103	332

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Find 184 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCGTTTGAAGCAAGGCG+AGG	0.664620	7_2:-64476355	None:intergenic
AAACTCGTTTCGAGATAAGT+TGG	0.465213	7_2:+64477874	Msa1069010:CDS
AAACTGGCGAATTCTTGGAA+AGG	0.606001	7_2:+64477058	Msa1069010:CDS
AAAGTAATAAGTGAGTGCAA+GGG	0.609209	7_2:+64477959	Msa1069010:CDS
AAATCCTCAAGCAACCTTGG+TGG	0.573648	7_2:-64479361	None:intergenic
AAATGCTCGACTGAATACCT+CGG	0.653595	7_2:-64478395	None:intergenic
AAATTTGGTTTGACATTTAG+TGG	0.382140	7_2:+64479527	Msa1069010:CDS
AACAGTCAGAACGACATGTT+CGG	0.418772	7_2:+64476674	Msa1069010:CDS
AACCATTCAGGGGTATCATT+TGG	0.395007	7_2:+64477665	Msa1069010:intron
AACGACATGTTCGGGTTTAC+AGG	0.226925	7_2:+64476683	Msa1069010:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTCATATAACAATCTCACA+GGG	+	chr7_2:64476603-64476622	Msa1069010:CDS	30.0%
CTTATAAAGAACAAGTTCAC+TGG	+	chr7_2:64476752-64476771	Msa1069010:CDS	30.0%
TTTATTTGATCTACAGCTTC+GGG	+	chr7_2:64476805-64476824	Msa1069010:CDS	30.0%
CTATTGAAATCAGGTTCATT+AGG	-	chr7_2:64476956-64476975	None:intergenic	30.0%
TCAGTTAAATTTGCAAATGC+AGG	-	chr7_2:64477181-64477200	None:intergenic	30.0%
GATTTGAGGAACTTGTATTT+AGG	+	chr7_2:64477199-64477218	Msa1069010:CDS	30.0%
TTAGGTGATAACAATTTGAC+TGG	+	chr7_2:64477217-64477236	Msa1069010:CDS	30.0%
GTATCTAACAACAATCTATC+TGG	+	chr7_2:64477289-64477308	Msa1069010:CDS	30.0%
TGCTCAATGAAATAGAAAAG+TGG	+	chr7_2:64477586-64477605	Msa1069010:intron	30.0%
GATGATTGTTTGTAAACGTA+AGG	+	chr7_2:64477712-64477731	Msa1069010:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	64476095	64479616	64476095	ID=Msa1069010;Name=Msa1069010
chr7_2	mRNA	64476095	64479616	64476095	ID=Msa1069010-mRNA-1;Parent=Msa1069010;Name=Msa1069010-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|0\|0\|0.5\|1\|1\|4\|0\|819
chr7_2	exon	64476095	64477430	64476095	ID=Msa1069010-mRNA-1:exon:13414;Parent=Msa1069010-mRNA-1
chr7_2	exon	64477675	64478630	64477675	ID=Msa1069010-mRNA-1:exon:13415;Parent=Msa1069010-mRNA-1
chr7_2	exon	64479318	64479368	64479318	ID=Msa1069010-mRNA-1:exon:13416;Parent=Msa1069010-mRNA-1
chr7_2	exon	64479500	64479616	64479500	ID=Msa1069010-mRNA-1:exon:13417;Parent=Msa1069010-mRNA-1
chr7_2	CDS	64476095	64477430	64476095	ID=Msa1069010-mRNA-1:cds;Parent=Msa1069010-mRNA-1
chr7_2	CDS	64477675	64478630	64477675	ID=Msa1069010-mRNA-1:cds;Parent=Msa1069010-mRNA-1
chr7_2	CDS	64479318	64479368	64479318	ID=Msa1069010-mRNA-1:cds;Parent=Msa1069010-mRNA-1
chr7_2	CDS	64479500	64479616	64479500	ID=Msa1069010-mRNA-1:cds;Parent=Msa1069010-mRNA-1

Gene Sequence

>Msa1069010

ATGGTTATTGCAGATGATGGCACTTTCATGTCAAAGCTAGCAAAATCTTTGAGTCCTACTCCGTCAGGTTGGTCAACTAGCAGCAACTTCTGCACCTGGAACGGTGTAAAATGTGACCAAGCACACCGAGTAACATCTATCGACCTTGCTTCCAAGTCACTCAATGGAACACTTCCTTCTGATCTCAACTCGCTCTCCCAACTCACCTCCCTCTTTCTTCAGTCCAACTCTCTTTCTGGCGCATTACCCTCGCTCGCTAACCTCGCCTTGCTTCAAACGGTTTCCCTTGGCCAAAACAACTTCTTATCAGTTCCTGTTGGTTGCTTCAAAGGACTCACCGACCTCCAAACACTCTCCATGAGTTTCAACATTGACCTTGCTCCATGGACGTTTCCTACAGACTTGGCTGAGTCTTCCAGCCTAGTCTCACTTGACCTTGGAAGTACCAATCTCGAGGGTTCCCTGCCGGATATATTTGATTCTTTAGTCAGTTTGCAGGAGCTTCGTCTCTCATATAACAATCTCACAGGGGATTTGCCCAAGTCTTTCTCAGGATCTGGGATTAAGAACATGTGGCTCAACAGTCAGAACGACATGTTCGGGTTTACAGGTTCTATTGACGTGCTTGCTTCAATGACTCACGCGGCTCAAGTTTGGCTTATAAAGAACAAGTTCACTGGTCAAATTCCTGATTTGTCCAAGTGTACCAATTTATTTGATCTACAGCTTCGGGATAATCAGTTAACAGGTGTTGTTCCGCCTTCTTTAATGGTCCTGTCTAGTTTGCAGAACATTACCTTGGACAACAATCAATTGCAGGGCCCTTTTCCTTCTTTTGGGAAAGGTGTACGGTTCAGTCCTAATGAACCTGATTTCAATAGCTTTTGTCGAAACACTTCTGGACCTTGCGATCCACGAGTCACTAATTTGCTCCATATTGCTGGAGATTTTGGGTATCCCCTTAAACTGGCGAATTCTTGGAAAGGGAACAATCCTTGTCAAAACTGGAGATTCATTGTGTGTTCATCGGAGAAGATTATTACAATAAACTTAGCAAAACAGAATTTGAACGGAACCATTTCACCTGCATTTGCAAATTTAACTGATTTGAGGAACTTGTATTTAGGTGATAACAATTTGACTGGCTCAATACCTGAGAGCTTGACAAGTTTGGCACATCTTCAGATTTTGGATGTATCTAACAACAATCTATCTGGAGAGGTTCCTACATTCTCATCTATGCTGAGATTCGATTCAACTGGTAATGCTTTGCTTGGACTTGGAAGTTCATCTCAAAAGTCTACTTCTTCTTTGCTATTGCTGGCTTGGATTCTAGGGGTATCATTTGGTGTAGGAGCTGTACTATTTATTGCGATGATTGTTTGTAAACGTAAGGGATATCTAAGTTTAGTACGAACGAGGATCTTCAAGAAAACAAGAATATCTATTGACCAAGATCATATTGAGGATTTCATAAAAAGATATAATTTGTCAGTGCCGAAGCGGTATAGTTATGCTGAAGTGAAAAGGTTCACAAACTCGTTTCGAGATAAGTTGGGTCAAGGAGGATATGGTGTTGTGTACAAAGCCAGTTTACCTGATGGCCGTCATGTTGCAGTGAAAGTAATAAGTGAGTGCAAGGGAGACGGAGAAGAATTTATAAATGAAGTTGCAAGCATAAGTAAAACATCACATGTGAACATTGTCTCACTTTTGGGTTTTTGTTATGAAAAGAACAAAAGTGCATTGATATATGAATTCATGTCCAATGGATCATTAGATAAGTTCATATATAGAAGTGGATTTCCAAATGCTATTTGTGATTTGGATTGGAACACATTGTTCCATATTGCAATTAGCATTGCTAGAGGACTAGAGTACTTACATCAAGGTTGTATTTCAAGAATTTTGCATCTTGATATCAAACCTCAAAACATTCTTTTAGATGAAGATTTTTGTCCAAAAATATCTGATTTTGGTCTAGCTAAAATATGTCAAAAGAAAGAGAGTGTTGTTTCCCTACTTGGCACAAGAGGAACTATAGGCTACATAGCACCCGAGGTATTCAGTCGAGCATTTGGTGGAGTTTCTTCTAAGTCTGATGTATACAGTTATGGCATGTTGACTCTTGAAATAACCGGAGAAAGAAAGAGTCGTGATACTAGAGGGTCTGATATGACTGAAATGTACTTTCCGGATTGGATATATAAGGATCTTGAGCAAGGTAATACTCTTTTAAATAATTTAACAATCTCTGAAGAAGAAAATGATATAGTAAAGAAGATTACTATGGAAATTAATATAGTTCCTCATGACTCCTCGCAAACAACTGTCACCACCAAGTTTCTTCACGAGGGTTGTTTGCTTCAGAAATTTGGTTTGACATTTAGTGGTGTGGGGGTAGAAGGCCGTCCTTATCAAACTGGAGGCTCGGCTCTCACAGTAAAACTATGCCCCTAA

Protein sequence

>Msa1069010

MVIADDGTFMSKLAKSLSPTPSGWSTSSNFCTWNGVKCDQAHRVTSIDLASKSLNGTLPSDLNSLSQLTSLFLQSNSLSGALPSLANLALLQTVSLGQNNFLSVPVGCFKGLTDLQTLSMSFNIDLAPWTFPTDLAESSSLVSLDLGSTNLEGSLPDIFDSLVSLQELRLSYNNLTGDLPKSFSGSGIKNMWLNSQNDMFGFTGSIDVLASMTHAAQVWLIKNKFTGQIPDLSKCTNLFDLQLRDNQLTGVVPPSLMVLSSLQNITLDNNQLQGPFPSFGKGVRFSPNEPDFNSFCRNTSGPCDPRVTNLLHIAGDFGYPLKLANSWKGNNPCQNWRFIVCSSEKIITINLAKQNLNGTISPAFANLTDLRNLYLGDNNLTGSIPESLTSLAHLQILDVSNNNLSGEVPTFSSMLRFDSTGNALLGLGSSSQKSTSSLLLLAWILGVSFGVGAVLFIAMIVCKRKGYLSLVRTRIFKKTRISIDQDHIEDFIKRYNLSVPKRYSYAEVKRFTNSFRDKLGQGGYGVVYKASLPDGRHVAVKVISECKGDGEEFINEVASISKTSHVNIVSLLGFCYEKNKSALIYEFMSNGSLDKFIYRSGFPNAICDLDWNTLFHIAISIARGLEYLHQGCISRILHLDIKPQNILLDEDFCPKISDFGLAKICQKKESVVSLLGTRGTIGYIAPEVFSRAFGGVSSKSDVYSYGMLTLEITGERKSRDTRGSDMTEMYFPDWIYKDLEQGNTLLNNLTISEEENDIVKKITMEINIVPHDSSQTTVTTKFLHEGCLLQKFGLTFSGVGVEGRPYQTGGSALTVKLCP*