AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1299000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1299000 MtrunA17_Chr4g0056711 95.847 313 8 1 1 308 1 313 0.0 600
Msa1299000 MtrunA17_Chr5g0398451 60.084 238 95 0 67 304 77 314 1.55e-111 325
Msa1299000 MtrunA17_Chr2g0291431 42.697 267 150 2 33 299 25 288 7.32e-76 234
Msa1299000 MtrunA17_Chr3g0109441 51.250 80 37 1 187 264 1 80 3.54e-23 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1299000 AT1G12450.1 59.441 286 113 3 17 302 11 293 7.59e-124 357
Msa1299000 AT4G22850.1 61.566 281 103 2 27 306 19 295 6.84e-118 341
Msa1299000 AT4G12000.1 54.817 301 131 3 13 308 6 306 1.36e-111 326
Msa1299000 AT4G12000.2 54.817 301 131 3 13 308 6 306 1.36e-111 326
Msa1299000 AT4G12000.3 54.817 301 131 3 13 308 6 306 1.36e-111 326
Msa1299000 AT4G22850.2 62.656 241 85 2 27 266 19 255 1.53e-100 296
Msa1299000 AT2G02370.2 40.678 295 158 5 14 302 6 289 1.43e-79 244
Msa1299000 AT2G02370.1 40.678 295 158 5 14 302 6 289 1.43e-79 244
Msa1299000 AT2G02370.3 40.678 295 158 5 14 302 6 289 1.43e-79 244
Msa1299000 AT1G03260.1 26.061 165 116 3 140 302 77 237 5.61e-11 62.4

Find 120 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGTTGTTTCTGAGTTTA+GGG 0.181599 8_3:-59986650 Msa1299000:CDS
CTGTACATGAATTTATTTAT+AGG 0.220256 8_3:-59983139 Msa1299000:three_prime_UTR
AAGTACGGGCCTTACATAAT+TGG 0.221111 8_3:-59985835 Msa1299000:CDS
TCTGTCTCCCAATTTATTAT+TGG 0.230391 8_3:+59986298 None:intergenic
GTTCTGTTGTTTCTGAGTTT+AGG 0.232102 8_3:-59986651 Msa1299000:CDS
TAGATTGCAACAAATATTTC+TGG 0.242638 8_3:+59985793 None:intergenic
CAATAATTGAAGACCATATA+AGG 0.250509 8_3:+59985877 None:intergenic
AAGATTGAGCCAATGATAAA+AGG 0.256065 8_3:+59986109 None:intergenic
CAGATCATTCTCAATGCTTT+AGG 0.259213 8_3:-59983531 Msa1299000:CDS
TGACACTTGGTTATGGATTT+GGG 0.272523 8_3:-59986174 Msa1299000:CDS
AGGTGATTCCAATAATAAAT+TGG 0.276150 8_3:-59986306 Msa1299000:CDS
TTTAGAATAGAAGCCTTCTT+TGG 0.281924 8_3:+59985967 None:intergenic
GTGACACTTGGTTATGGATT+TGG 0.289964 8_3:-59986175 Msa1299000:CDS
GACGATCCGTCGTGTGGTAT+TGG 0.309310 8_3:-59986683 Msa1299000:CDS
GATTTCTCCGTTCCCTTATA+TGG 0.318092 8_3:-59985890 Msa1299000:CDS
TGGCTGTTGTTGTTCTCAAA+TGG 0.320051 8_3:-59986623 Msa1299000:CDS
TTAGAGCTGTTGCCTTAATC+AGG 0.322826 8_3:-59985912 Msa1299000:CDS
AGAAACCTTGTCAATGAGAT+AGG 0.333314 8_3:+59986593 None:intergenic
ACGATCCGTCGTGTGGTATT+GGG 0.356797 8_3:-59986682 Msa1299000:CDS
CGGTGGCGGTGGATGGAAAA+AGG 0.357415 8_3:-59986844 Msa1299000:CDS
GCTGGAGTGACACTTGGTTA+TGG 0.359406 8_3:-59986181 Msa1299000:CDS
AATCTGCTGGTGCAGGAAAC+TGG 0.369463 8_3:-59985945 Msa1299000:CDS
ACTTTCTCCACCACAGTTAA+CGG 0.372710 8_3:+59986729 None:intergenic
GAACGGAGAAATCCTGATTA+AGG 0.382308 8_3:+59985900 None:intergenic
ATAATAACTGCAGCAGCTAT+TGG 0.391137 8_3:-59986142 Msa1299000:CDS
GAGACGGCTGAAGGAGTTGC+AGG 0.399333 8_3:-59983460 Msa1299000:CDS
CAACTCCTTCAGCCGTCTCT+TGG 0.400465 8_3:+59983464 None:intergenic
CATGTTTCGTTTAAGTGAAT+CGG 0.402632 8_3:+59986962 None:intergenic
ATGTTATAGCTGCTTCATAC+TGG 0.409125 8_3:+59983376 None:intergenic
GGCTGTTGTTGTTCTCAAAT+GGG 0.411976 8_3:-59986622 Msa1299000:CDS
AAGAAGAGATTAATGAATAA+TGG 0.418233 8_3:+59987018 None:intergenic
GCCTTACATAATTGGATCCT+TGG 0.420933 8_3:-59985827 Msa1299000:CDS
AACTCCGGTGACGGTGGCGG+TGG 0.422523 8_3:-59986855 Msa1299000:CDS
CAGCCGTCTCTTGGCATAAA+CGG 0.424438 8_3:+59983473 None:intergenic
CATACTGCTGTATATCATAC+TGG 0.438916 8_3:-59983356 Msa1299000:three_prime_UTR
TGCCATCTACACCCTCTATG+TGG 0.439100 8_3:-59986207 Msa1299000:CDS
GTAGATGGCAAAAGTATTGT+TGG 0.444313 8_3:+59986220 None:intergenic
GGTGATTCCAATAATAAATT+GGG 0.444656 8_3:-59986305 Msa1299000:CDS
CGTGTGGTATTGGGTCAAAA+TGG 0.449991 8_3:-59986673 Msa1299000:CDS
GGGTTGACAAAGGATATAAA+AGG 0.451862 8_3:-59983226 Msa1299000:three_prime_UTR
CCATCCACCGCCACCGTCAC+CGG 0.465993 8_3:+59986851 None:intergenic
AAGCATTGAGAATGATCTGC+TGG 0.468091 8_3:+59983535 None:intergenic
ACCCACATAGAGGGTGTAGA+TGG 0.470244 8_3:+59986205 None:intergenic
GACAGAGACTTTCAGTCCTC+CGG 0.473432 8_3:-59986281 Msa1299000:CDS
AAGCTGATGATGATAACAAA+GGG 0.478409 8_3:-59986791 Msa1299000:CDS
CCGGTGACGGTGGCGGTGGA+TGG 0.482219 8_3:-59986851 Msa1299000:CDS
GTTGTTGTTCTCAAATGGGT+TGG 0.483636 8_3:-59986618 Msa1299000:CDS
AGATTGAGCCAATGATAAAA+GGG 0.483710 8_3:+59986110 None:intergenic
GGATTTGATTTGAAGTCGGC+AGG 0.484350 8_3:-59983118 Msa1299000:three_prime_UTR
ATTCTAAAATCTGCTGGTGC+AGG 0.484602 8_3:-59985952 Msa1299000:CDS
ACATAATTGGATCCTTGGTC+GGG 0.486638 8_3:-59985822 Msa1299000:CDS
GCTTCTATTCTAAAATCTGC+TGG 0.490012 8_3:-59985958 Msa1299000:CDS
TTGTCGATCAACCCTTTCCA+TGG 0.496814 8_3:+59983272 None:intergenic
ACACCCTCTATGTGGGTGGC+TGG 0.496986 8_3:-59986199 Msa1299000:CDS
GCCATCTACACCCTCTATGT+GGG 0.497988 8_3:-59986206 Msa1299000:CDS
AAAGCCCAGACTAAAACTAC+TGG 0.500282 8_3:+59983407 None:intergenic
AATAATTGAAGACCATATAA+GGG 0.500714 8_3:+59985878 None:intergenic
TACATAATTGGATCCTTGGT+CGG 0.503152 8_3:-59985823 Msa1299000:CDS
ACCAAGGATCCAATTATGTA+AGG 0.506973 8_3:+59985826 None:intergenic
TATTATAACATTGGTGGGAA+GGG 0.509980 8_3:-59983246 Msa1299000:three_prime_UTR
GATTATATCAAATTGATGCC+TGG 0.514087 8_3:-59986768 Msa1299000:CDS
GTGGCAACAAATGTTAAGTA+CGG 0.515467 8_3:-59985850 Msa1299000:CDS
GTATTATAACATTGGTGGGA+AGG 0.518859 8_3:-59983247 Msa1299000:three_prime_UTR
ATTATTGCAATAACACATGT+TGG 0.519262 8_3:+59983053 None:intergenic
ACGCGTTTGGTGTGATTCGA+AGG 0.519349 8_3:+59987058 None:intergenic
TCATACTGGCAAGTAGCAAA+TGG 0.522529 8_3:-59983342 Msa1299000:three_prime_UTR
TTGACTTTCACTTGAAGCAT+CGG 0.524464 8_3:+59983569 None:intergenic
GTTAACTGTGGTGGAGAAAG+TGG 0.528551 8_3:-59986727 Msa1299000:CDS
CACACGACGGATCGTCTTGA+CGG 0.531902 8_3:+59986690 None:intergenic
TACATTACTCGTGGTGGTGA+TGG 0.535558 8_3:-59986996 Msa1299000:five_prime_UTR
AGTAACTTCATCCATGGAAA+GGG 0.535805 8_3:-59983283 Msa1299000:three_prime_UTR
TAGATGGCAAAAGTATTGTT+GGG 0.536380 8_3:+59986221 None:intergenic
TTATCTAGTAACTTCATCCA+TGG 0.536473 8_3:-59983289 Msa1299000:three_prime_UTR
GATGATGAGAGAAACGCGTT+TGG 0.539678 8_3:+59987045 None:intergenic
CGACAAATGTATTATAACAT+TGG 0.542386 8_3:-59983255 Msa1299000:three_prime_UTR
TAGTAACTTCATCCATGGAA+AGG 0.544158 8_3:-59983284 Msa1299000:three_prime_UTR
GATAACTCCGGTGACGGTGG+CGG 0.546344 8_3:-59986858 Msa1299000:CDS
GCTGAAGGAGTTGCAGGAGG+AGG 0.547430 8_3:-59983454 Msa1299000:CDS
GTTAGAGAAGTATCCAAAGA+AGG 0.550303 8_3:-59985980 Msa1299000:CDS
AATTGGATCCTTGGTCGGGA+TGG 0.551661 8_3:-59985818 Msa1299000:CDS
CAAATGTATTATAACATTGG+TGG 0.552232 8_3:-59983252 Msa1299000:three_prime_UTR
AAATGTATTATAACATTGGT+GGG 0.555231 8_3:-59983251 Msa1299000:three_prime_UTR
ATCTCTTCTTACATTACTCG+TGG 0.557425 8_3:-59987005 Msa1299000:five_prime_UTR
GCTCATTGCACTGCTAGGAG+AGG 0.563191 8_3:-59983318 Msa1299000:three_prime_UTR
GAAGCTGATGATGATAACAA+AGG 0.566873 8_3:-59986792 Msa1299000:CDS
TGGCAACAAATGTTAAGTAC+GGG 0.566897 8_3:-59985849 Msa1299000:CDS
TATAGGATTTGATTTGAAGT+CGG 0.568285 8_3:-59983122 Msa1299000:three_prime_UTR
ATGGTGCTCATTGCACTGCT+AGG 0.570433 8_3:-59983323 Msa1299000:three_prime_UTR
TGGGTGGCTGGAGTGACACT+TGG 0.580051 8_3:-59986187 Msa1299000:CDS
GAAACCTTGTCAATGAGATA+GGG 0.583464 8_3:+59986594 None:intergenic
ATCTACACCCTCTATGTGGG+TGG 0.585631 8_3:-59986203 Msa1299000:CDS
AGCATTGAGAATGATCTGCT+GGG 0.587919 8_3:+59983536 None:intergenic
GGTAAACACTCATCGGAACC+AGG 0.589023 8_3:+59986750 None:intergenic
TTTAGGCTTCTGTTTAACTG+TGG 0.590721 8_3:-59983514 Msa1299000:CDS
TTCTGGCACCATCCCGACCA+AGG 0.594140 8_3:+59985810 None:intergenic
AACAACAAAATAGTAAGCAC+CGG 0.597356 8_3:+59986262 None:intergenic
TCACCGGAGTTATCCTTCAT+CGG 0.603801 8_3:+59986867 None:intergenic
CACTCCAGCCACCCACATAG+AGG 0.605454 8_3:+59986195 None:intergenic
GGCATAAACGGTGATAATGA+CGG 0.608504 8_3:+59983485 None:intergenic
TCACCGTTTATGCCAAGAGA+CGG 0.609208 8_3:-59983476 Msa1299000:CDS
TTGAAGACCATATAAGGGAA+CGG 0.611668 8_3:+59985883 None:intergenic
AGTTAACGGTAAACACTCAT+CGG 0.614577 8_3:+59986743 None:intergenic
ATGAAGGATAACTCCGGTGA+CGG 0.616962 8_3:-59986864 Msa1299000:CDS
GTGTTTACCGTTAACTGTGG+TGG 0.623625 8_3:-59986736 Msa1299000:CDS
CGTCAAGACGATCCGTCGTG+TGG 0.627835 8_3:-59986689 Msa1299000:CDS
TGGACCCTATCTCATTGACA+AGG 0.629821 8_3:-59986598 Msa1299000:intron
TCTTCTTACATTACTCGTGG+TGG 0.631555 8_3:-59987002 Msa1299000:five_prime_UTR
TTATGCCAAGAGACGGCTGA+AGG 0.635178 8_3:-59983469 Msa1299000:CDS
AAGGATAACTCCGGTGACGG+TGG 0.642097 8_3:-59986861 Msa1299000:CDS
ACTCCAGCCACCCACATAGA+GGG 0.645848 8_3:+59986196 None:intergenic
TTTCCGATGAAGGATAACTC+CGG 0.656857 8_3:-59986870 Msa1299000:exon
GGTCTTCAATTATTGTGCTG+TGG 0.660894 8_3:-59985869 Msa1299000:CDS
ACGGCTGAAGGAGTTGCAGG+AGG 0.663645 8_3:-59983457 Msa1299000:CDS
AACTGTGGTGGAGAAAGTGG+AGG 0.671574 8_3:-59986724 Msa1299000:CDS
AACAAAATAGTAAGCACCGG+AGG 0.675222 8_3:+59986265 None:intergenic
TTGGTGGGAAGGGTTGACAA+AGG 0.683900 8_3:-59983236 Msa1299000:three_prime_UTR
AGCTGATGATGATAACAAAG+GGG 0.714737 8_3:-59986790 Msa1299000:CDS
ATTGAGAATGATCTGCTGGG+CGG 0.717938 8_3:+59983539 None:intergenic
TTTGACCCAATACCACACGA+CGG 0.720628 8_3:+59986677 None:intergenic
TGAGTGTTTACCGTTAACTG+TGG 0.722193 8_3:-59986739 Msa1299000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATTTTTTTTTATTATGAA+CGG + chr8_3:59983210-59983229 None:intergenic 10.0%
!!! TTTTTTCTTTTTTCACTTTT+AGG - chr8_3:59983229-59983248 Msa1299000:three_prime_UTR 15.0%
!!! TTTTTCTTTTTTCACTTTTA+GGG - chr8_3:59983230-59983249 Msa1299000:three_prime_UTR 15.0%
!!! CAATTGTTTGTTTTTATATT+TGG - chr8_3:59983584-59983603 Msa1299000:CDS 15.0%
!!! TAAAAAACAGAAATTTTCAA+CGG + chr8_3:59983638-59983657 None:intergenic 15.0%
!! TCTCAATTAATTTAATGTAT+TGG - chr8_3:59983754-59983773 Msa1299000:intron 15.0%
!!! TTAATTTAATGTATTGGTTA+TGG - chr8_3:59983760-59983779 Msa1299000:intron 15.0%
!!! TTGCATAATTTTAATTTTTC+AGG - chr8_3:59983812-59983831 Msa1299000:intron 15.0%
!!! TAGTTTTTTTTTCTTTTTCT+TGG - chr8_3:59985281-59985300 Msa1299000:intron 15.0%
!!! TTTTTGTTTTCTTCTTATTT+TGG - chr8_3:59985677-59985696 Msa1299000:intron 15.0%
!!! TTTTTGTTTTCTTCTTATTT+TGG - chr8_3:59985677-59985696 Msa1299000:intron 15.0%
!!! CTTTTTTCTTTATTAATTCA+CGG - chr8_3:59986283-59986302 Msa1299000:CDS 15.0%
!! AAGAAGAGATTAATGAATAA+TGG + chr8_3:59983126-59983145 None:intergenic 20.0%
!!! TTTATATTTGGATTGTTTTG+TGG - chr8_3:59983596-59983615 Msa1299000:intron 20.0%
!!! CATAATTTTAATTTTTCAGG+AGG - chr8_3:59983815-59983834 Msa1299000:intron 20.0%
!! AATAATTGAAGACCATATAA+GGG + chr8_3:59984266-59984285 None:intergenic 20.0%
!!! TGAATTCATATCATTTTATG+TGG - chr8_3:59984419-59984438 Msa1299000:intron 20.0%
!!! AAAACCTTTAAAGATTCATA+AGG + chr8_3:59985076-59985095 None:intergenic 20.0%
!! TTCTCATTTAGATCTTAATT+AGG - chr8_3:59985337-59985356 Msa1299000:intron 20.0%
!! CTTACATCTATATAAATTCT+TGG + chr8_3:59985402-59985421 None:intergenic 20.0%
!! AAAGTTGTCTATCATAATAA+TGG - chr8_3:59985447-59985466 Msa1299000:intron 20.0%
!! GACAAATAGTATTAGAATAT+GGG + chr8_3:59985572-59985591 None:intergenic 20.0%
!! TGACAAATAGTATTAGAATA+TGG + chr8_3:59985573-59985592 None:intergenic 20.0%
!!! GATAATTTTTTCCCTTTATT+TGG + chr8_3:59985637-59985656 None:intergenic 20.0%
!! GACAAATAGTATTAGAATAT+GGG + chr8_3:59985572-59985591 None:intergenic 20.0%
!! TGACAAATAGTATTAGAATA+TGG + chr8_3:59985573-59985592 None:intergenic 20.0%
!!! GATAATTTTTTCCCTTTATT+TGG + chr8_3:59985637-59985656 None:intergenic 20.0%
!! CGTGAATTAATAAAGAAAAA+AGG + chr8_3:59986285-59986304 None:intergenic 20.0%
!!! TTTTAAGAATTTACCTTGTA+TGG - chr8_3:59986316-59986335 Msa1299000:intron 20.0%
!! AAATGTATTATAACATTGGT+GGG - chr8_3:59986890-59986909 Msa1299000:five_prime_UTR 20.0%
!! AACAAAAATCGTTTACTATA+TGG - chr8_3:59986954-59986973 Msa1299000:five_prime_UTR 20.0%
!! CTGTACATGAATTTATTTAT+AGG - chr8_3:59987002-59987021 Msa1299000:five_prime_UTR 20.0%
! TTGTGTCAATGAATATCTAA+TGG - chr8_3:59983788-59983807 Msa1299000:intron 25.0%
! TGTGTCAATGAATATCTAAT+GGG - chr8_3:59983789-59983808 Msa1299000:intron 25.0%
! AGGTGATTCCAATAATAAAT+TGG - chr8_3:59983835-59983854 Msa1299000:intron 25.0%
! GGTGATTCCAATAATAAATT+GGG - chr8_3:59983836-59983855 Msa1299000:intron 25.0%
!! CACTTACTTCAATTTTATGA+TGG + chr8_3:59984058-59984077 None:intergenic 25.0%
! CAATAATTGAAGACCATATA+AGG + chr8_3:59984267-59984286 None:intergenic 25.0%
! TAGATTGCAACAAATATTTC+TGG + chr8_3:59984351-59984370 None:intergenic 25.0%
! TTACTTTATGCCTTCATATA+TGG - chr8_3:59984589-59984608 Msa1299000:intron 25.0%
!! CTTCAGTTAGATTTCTTTTA+TGG - chr8_3:59984621-59984640 Msa1299000:intron 25.0%
!! ATTTTCTTGAAATCTAAACG+AGG + chr8_3:59984722-59984741 None:intergenic 25.0%
! TTACTTTATGCCTTCATATA+TGG - chr8_3:59984589-59984608 Msa1299000:intron 25.0%
!! TCAACTTTTACCATATATGA+AGG + chr8_3:59984763-59984782 None:intergenic 25.0%
! GAGTATGGAAATAATTATGA+AGG + chr8_3:59984990-59985009 None:intergenic 25.0%
! ATAATTATTTCCATACTCTG+AGG - chr8_3:59984992-59985011 Msa1299000:intron 25.0%
!!! ATCTTTAAAGGTTTTGTTTG+TGG - chr8_3:59985081-59985100 Msa1299000:intron 25.0%
! TTCAATTTGTACTTGAAACA+AGG - chr8_3:59985124-59985143 Msa1299000:intron 25.0%
! AGGAAATATAAAAGAGTTGT+AGG - chr8_3:59985230-59985249 Msa1299000:intron 25.0%
!!! TGTATTAATTTTTTTGCTCG+TGG + chr8_3:59985531-59985550 None:intergenic 25.0%
!! TCGTTTTGTGATATATTCTA+TGG - chr8_3:59985593-59985612 Msa1299000:intron 25.0%
!!! TGTTTTCTTCTTATTTTGGA+AGG - chr8_3:59985681-59985700 Msa1299000:intron 25.0%
!!! GTTTTCTTCTTATTTTGGAA+GGG - chr8_3:59985682-59985701 Msa1299000:intron 25.0%
! ATAAGCTAGAATTACGTATT+TGG + chr8_3:59985758-59985777 None:intergenic 25.0%
! AGCTTATGTGATATATTCTA+TGG - chr8_3:59985771-59985790 Msa1299000:intron 25.0%
!!! TGTATTAATTTTTTTGCTCG+TGG + chr8_3:59985531-59985550 None:intergenic 25.0%
!! TCGTTTTGTGATATATTCTA+TGG - chr8_3:59985593-59985612 Msa1299000:intron 25.0%
!!! TGTTTTCTTCTTATTTTGGA+AGG - chr8_3:59985681-59985700 Msa1299000:intron 25.0%
!!! GTTTTCTTCTTATTTTGGAA+GGG - chr8_3:59985682-59985701 Msa1299000:intron 25.0%
! GTCGATGTCAATTTAATATT+TGG - chr8_3:59986258-59986277 Msa1299000:CDS 25.0%
! GAAATAGATTAAACCATACA+AGG + chr8_3:59986332-59986351 None:intergenic 25.0%
! TGTATGGTTTAATCTATTTC+TGG - chr8_3:59986332-59986351 Msa1299000:intron 25.0%
! TAAAATACATGTGAAATGCA+AGG + chr8_3:59986402-59986421 None:intergenic 25.0%
!! ACATGTATTTTATGTTGCTA+TGG - chr8_3:59986410-59986429 Msa1299000:intron 25.0%
! GGGTAAATGGAAATAATAAT+GGG + chr8_3:59986440-59986459 None:intergenic 25.0%
! TGGGTAAATGGAAATAATAA+TGG + chr8_3:59986441-59986460 None:intergenic 25.0%
! AACTAATGATGCAAAATATC+TGG - chr8_3:59986494-59986513 Msa1299000:intron 25.0%
! AATAGCCAATAAGTTCAATA+AGG + chr8_3:59986521-59986540 None:intergenic 25.0%
! CGACAAATGTATTATAACAT+TGG - chr8_3:59986886-59986905 Msa1299000:exon 25.0%
! CAAATGTATTATAACATTGG+TGG - chr8_3:59986889-59986908 Msa1299000:five_prime_UTR 25.0%
!!! ATTTTTGTTGTCAAGTTAGA+TGG + chr8_3:59986943-59986962 None:intergenic 25.0%
!!! TATAGGATTTGATTTGAAGT+CGG - chr8_3:59987019-59987038 Msa1299000:five_prime_UTR 25.0%
! ATTATTGCAATAACACATGT+TGG + chr8_3:59987091-59987110 None:intergenic 25.0%
CATGTTTCGTTTAAGTGAAT+CGG + chr8_3:59983182-59983201 None:intergenic 30.0%
! AAGCTGATGATGATAACAAA+GGG - chr8_3:59983350-59983369 Msa1299000:three_prime_UTR 30.0%
GATTATATCAAATTGATGCC+TGG - chr8_3:59983373-59983392 Msa1299000:three_prime_UTR 30.0%
!! TTCTGTTGTTTCTGAGTTTA+GGG - chr8_3:59983491-59983510 Msa1299000:CDS 30.0%
!! TGGATTGTTTTGTGGAATTT+AGG - chr8_3:59983604-59983623 Msa1299000:intron 30.0%
!! GGATTGTTTTGTGGAATTTA+GGG - chr8_3:59983605-59983624 Msa1299000:intron 30.0%
TCTGTCTCCCAATTTATTAT+TGG + chr8_3:59983846-59983865 None:intergenic 30.0%
AACAACAAAATAGTAAGCAC+CGG + chr8_3:59983882-59983901 None:intergenic 30.0%
!! TAGATGGCAAAAGTATTGTT+GGG + chr8_3:59983923-59983942 None:intergenic 30.0%
AGATTGAGCCAATGATAAAA+GGG + chr8_3:59984034-59984053 None:intergenic 30.0%
AAGATTGAGCCAATGATAAA+AGG + chr8_3:59984035-59984054 None:intergenic 30.0%
!! TGTGCCATTAAGATTTTGTA+TGG - chr8_3:59984079-59984098 Msa1299000:intron 30.0%
ATGTTTCATGAATCTATGCA+GGG - chr8_3:59984135-59984154 Msa1299000:intron 30.0%
! TTTAGAATAGAAGCCTTCTT+TGG + chr8_3:59984177-59984196 None:intergenic 30.0%
! ATTTGTTGCAATCTATACGT+AGG - chr8_3:59984356-59984375 Msa1299000:intron 30.0%
ACAAAAAATGATACGAGAGT+GGG + chr8_3:59984392-59984411 None:intergenic 30.0%
AACAAAAAATGATACGAGAG+TGG + chr8_3:59984393-59984412 None:intergenic 30.0%
GCGAATATAGGTTATGTAAT+TGG - chr8_3:59984517-59984536 Msa1299000:intron 30.0%
TGAGTATGTTTAGCAGAATA+TGG - chr8_3:59984543-59984562 Msa1299000:intron 30.0%
ACGTCCTTATGAATCTTTAA+AGG - chr8_3:59985069-59985088 Msa1299000:intron 30.0%
GTTCAAATTCAAGTAAGGAA+TGG + chr8_3:59985208-59985227 None:intergenic 30.0%
CCTATGTTCAAATTCAAGTA+AGG + chr8_3:59985213-59985232 None:intergenic 30.0%
CCTTACTTGAATTTGAACAT+AGG - chr8_3:59985210-59985229 Msa1299000:intron 30.0%
TAGGAATACTATCTATCACA+CGG - chr8_3:59985356-59985375 Msa1299000:intron 30.0%
GAATATGGGAATAGCTAAAA+AGG + chr8_3:59985558-59985577 None:intergenic 30.0%
!! TTTTCCCTTTATTTGGTCAA+GGG + chr8_3:59985630-59985649 None:intergenic 30.0%
!! TTTTTCCCTTTATTTGGTCA+AGG + chr8_3:59985631-59985650 None:intergenic 30.0%
TGGAAGGGTTATAGAAAAAA+AGG - chr8_3:59985697-59985716 Msa1299000:intron 30.0%
GAATATGGGAATAGCTAAAA+AGG + chr8_3:59985558-59985577 None:intergenic 30.0%
!! TTTTCCCTTTATTTGGTCAA+GGG + chr8_3:59985630-59985649 None:intergenic 30.0%
!! TTTTTCCCTTTATTTGGTCA+AGG + chr8_3:59985631-59985650 None:intergenic 30.0%
TGGAAGGGTTATAGAAAAAA+AGG - chr8_3:59985697-59985716 Msa1299000:intron 30.0%
ATCAGCTAGAATTACGTATT+TGG + chr8_3:59986046-59986065 None:intergenic 30.0%
TTGACTAGTAGGATCAATTT+GGG - chr8_3:59986075-59986094 Msa1299000:intron 30.0%
TTGGGAGATAAAAATTTCTG+TGG - chr8_3:59986093-59986112 Msa1299000:CDS 30.0%
CAAAAATTTGCCCTATTTCA+AGG + chr8_3:59986211-59986230 None:intergenic 30.0%
TGTGAAATGCAAGGAATTAA+TGG + chr8_3:59986393-59986412 None:intergenic 30.0%
TATTTCCATTTACCCATTTC+TGG - chr8_3:59986445-59986464 Msa1299000:intron 30.0%
!!! GGGAATTTTGATTAAGACAT+TGG - chr8_3:59986549-59986568 Msa1299000:intron 30.0%
TTATCTAGTAACTTCATCCA+TGG - chr8_3:59986852-59986871 Msa1299000:CDS 30.0%
TATTATAACATTGGTGGGAA+GGG - chr8_3:59986895-59986914 Msa1299000:five_prime_UTR 30.0%
! CTATGTCAATTTTAAATGCG+AGG - chr8_3:59987133-59987152 Msa1299000:five_prime_UTR 30.0%
!!! GGTTTCGATTTTGTTGCTTT+TGG + chr8_3:59983036-59983055 None:intergenic 35.0%
!!! TTGCAAGAAGCGCTTTTTTT+GGG + chr8_3:59983057-59983076 None:intergenic 35.0%
!!! TTTGCAAGAAGCGCTTTTTT+TGG + chr8_3:59983058-59983077 None:intergenic 35.0%
ATCTCTTCTTACATTACTCG+TGG - chr8_3:59983136-59983155 Msa1299000:three_prime_UTR 35.0%
! TTTTGTGCATTTTCCGATGA+AGG - chr8_3:59983261-59983280 Msa1299000:three_prime_UTR 35.0%
ATGGAAAAAGGAGGTTGTTT+CGG - chr8_3:59983309-59983328 Msa1299000:three_prime_UTR 35.0%
! GAAGCTGATGATGATAACAA+AGG - chr8_3:59983349-59983368 Msa1299000:three_prime_UTR 35.0%
! AGCTGATGATGATAACAAAG+GGG - chr8_3:59983351-59983370 Msa1299000:three_prime_UTR 35.0%
AGTTAACGGTAAACACTCAT+CGG + chr8_3:59983401-59983420 None:intergenic 35.0%
!! GTTCTGTTGTTTCTGAGTTT+AGG - chr8_3:59983490-59983509 Msa1299000:CDS 35.0%
!! GTTTCTGAGTTTAGGGTTTT+TGG - chr8_3:59983498-59983517 Msa1299000:CDS 35.0%
GAAACCTTGTCAATGAGATA+GGG + chr8_3:59983550-59983569 None:intergenic 35.0%
AGAAACCTTGTCAATGAGAT+AGG + chr8_3:59983551-59983570 None:intergenic 35.0%
!! GTAGATGGCAAAAGTATTGT+TGG + chr8_3:59983924-59983943 None:intergenic 35.0%
TGACACTTGGTTATGGATTT+GGG - chr8_3:59983967-59983986 Msa1299000:intron 35.0%
ATAATAACTGCAGCAGCTAT+TGG - chr8_3:59983999-59984018 Msa1299000:intron 35.0%
! GCCATTAAGATTTTGTATGG+CGG - chr8_3:59984082-59984101 Msa1299000:intron 35.0%
ACCGCCATACAAAATCTTAA+TGG + chr8_3:59984086-59984105 None:intergenic 35.0%
TCGATTCATGTGCACTAATT+TGG - chr8_3:59984107-59984126 Msa1299000:intron 35.0%
GATGTTTCATGAATCTATGC+AGG - chr8_3:59984134-59984153 Msa1299000:intron 35.0%
!! GTTAGAGAAGTATCCAAAGA+AGG - chr8_3:59984161-59984180 Msa1299000:intron 35.0%
!! GCTTCTATTCTAAAATCTGC+TGG - chr8_3:59984183-59984202 Msa1299000:intron 35.0%
TTGAAGACCATATAAGGGAA+CGG + chr8_3:59984261-59984280 None:intergenic 35.0%
GTGGCAACAAATGTTAAGTA+CGG - chr8_3:59984291-59984310 Msa1299000:intron 35.0%
TGGCAACAAATGTTAAGTAC+GGG - chr8_3:59984292-59984311 Msa1299000:intron 35.0%
ACCAAGGATCCAATTATGTA+AGG + chr8_3:59984318-59984337 None:intergenic 35.0%
TACATAATTGGATCCTTGGT+CGG - chr8_3:59984318-59984337 Msa1299000:intron 35.0%
AGACATCAAAAGTAGGCAAA+AGG + chr8_3:59984487-59984506 None:intergenic 35.0%
ATGGCATAGACATCAAAAGT+AGG + chr8_3:59984494-59984513 None:intergenic 35.0%
CATAACCTATATTCGCAGTA+TGG + chr8_3:59984513-59984532 None:intergenic 35.0%
GCAACTTGTACCATATATGA+AGG + chr8_3:59984602-59984621 None:intergenic 35.0%
CCATGTGAAATGTGAAAACA+TGG + chr8_3:59984867-59984886 None:intergenic 35.0%
! CCATGTTTTCACATTTCACA+TGG - chr8_3:59984864-59984883 Msa1299000:intron 35.0%
! ATTATTTCCATACTCTGAGG+TGG - chr8_3:59984995-59985014 Msa1299000:intron 35.0%
!! TTATTTCCATACTCTGAGGT+GGG - chr8_3:59984996-59985015 Msa1299000:intron 35.0%
! TGATTTTGCCTACTACTTCT+TGG - chr8_3:59985023-59985042 Msa1299000:intron 35.0%
GTTACAAACCAAGAAGTAGT+AGG + chr8_3:59985034-59985053 None:intergenic 35.0%
! TTTCTTTTTCTTGGAGCAGT+TGG - chr8_3:59985290-59985309 Msa1299000:intron 35.0%
AGGAATACTATCTATCACAC+GGG - chr8_3:59985357-59985376 Msa1299000:intron 35.0%
!!! ATTTTTTTGCTCGTGGAACT+GGG + chr8_3:59985524-59985543 None:intergenic 35.0%
!!! AATTTTTTTGCTCGTGGAAC+TGG + chr8_3:59985525-59985544 None:intergenic 35.0%
TGATTCCCTTGACCAAATAA+AGG - chr8_3:59985622-59985641 Msa1299000:intron 35.0%
GATTCCCTTGACCAAATAAA+GGG - chr8_3:59985623-59985642 Msa1299000:intron 35.0%
!!! ATTTTTTTGCTCGTGGAACT+GGG + chr8_3:59985524-59985543 None:intergenic 35.0%
!!! AATTTTTTTGCTCGTGGAAC+TGG + chr8_3:59985525-59985544 None:intergenic 35.0%
TGATTCCCTTGACCAAATAA+AGG - chr8_3:59985622-59985641 Msa1299000:intron 35.0%
GATTCCCTTGACCAAATAAA+GGG - chr8_3:59985623-59985642 Msa1299000:intron 35.0%
GTTGACTAGTAGGATCAATT+TGG - chr8_3:59986074-59986093 Msa1299000:intron 35.0%
!! GGGCAAATTTTTGCTTTGAA+AGG - chr8_3:59986218-59986237 Msa1299000:CDS 35.0%
TAACACCAGAAATGGGTAAA+TGG + chr8_3:59986453-59986472 None:intergenic 35.0%
CTGGACCTTATTGAACTTAT+TGG - chr8_3:59986513-59986532 Msa1299000:intron 35.0%
! ACTTATTGGCTATTTACTGC+AGG - chr8_3:59986527-59986546 Msa1299000:intron 35.0%
! CTTATTGGCTATTTACTGCA+GGG - chr8_3:59986528-59986547 Msa1299000:intron 35.0%
! TTATTGGCTATTTACTGCAG+GGG - chr8_3:59986529-59986548 Msa1299000:intron 35.0%
TTGACTTTCACTTGAAGCAT+CGG + chr8_3:59986575-59986594 None:intergenic 35.0%
CAGATCATTCTCAATGCTTT+AGG - chr8_3:59986610-59986629 Msa1299000:CDS 35.0%
TTTAGGCTTCTGTTTAACTG+TGG - chr8_3:59986627-59986646 Msa1299000:CDS 35.0%
!!! ATAGTCCAGTAGTTTTAGTC+TGG - chr8_3:59986729-59986748 Msa1299000:CDS 35.0%
!!! TAGTCCAGTAGTTTTAGTCT+GGG - chr8_3:59986730-59986749 Msa1299000:CDS 35.0%
ATGTTATAGCTGCTTCATAC+TGG + chr8_3:59986768-59986787 None:intergenic 35.0%
CATACTGCTGTATATCATAC+TGG - chr8_3:59986785-59986804 Msa1299000:CDS 35.0%
TAGTAACTTCATCCATGGAA+AGG - chr8_3:59986857-59986876 Msa1299000:CDS 35.0%
AGTAACTTCATCCATGGAAA+GGG - chr8_3:59986858-59986877 Msa1299000:CDS 35.0%
GTATTATAACATTGGTGGGA+AGG - chr8_3:59986894-59986913 Msa1299000:five_prime_UTR 35.0%
GGGTTGACAAAGGATATAAA+AGG - chr8_3:59986915-59986934 Msa1299000:five_prime_UTR 35.0%
TCTTCTTACATTACTCGTGG+TGG - chr8_3:59983139-59983158 Msa1299000:three_prime_UTR 40.0%
TTTCCGATGAAGGATAACTC+CGG - chr8_3:59983271-59983290 Msa1299000:three_prime_UTR 40.0%
TGAGTGTTTACCGTTAACTG+TGG - chr8_3:59983402-59983421 Msa1299000:three_prime_UTR 40.0%
ACTTTCTCCACCACAGTTAA+CGG + chr8_3:59983415-59983434 None:intergenic 40.0%
! TGGCTGTTGTTGTTCTCAAA+TGG - chr8_3:59983518-59983537 Msa1299000:CDS 40.0%
! GGCTGTTGTTGTTCTCAAAT+GGG - chr8_3:59983519-59983538 Msa1299000:CDS 40.0%
! GTTGTTGTTCTCAAATGGGT+TGG - chr8_3:59983523-59983542 Msa1299000:CDS 40.0%
!! AACAAAATAGTAAGCACCGG+AGG + chr8_3:59983879-59983898 None:intergenic 40.0%
GTGACACTTGGTTATGGATT+TGG - chr8_3:59983966-59983985 Msa1299000:intron 40.0%
!! GTGTCACTCCCTTTTATCAT+TGG - chr8_3:59984023-59984042 Msa1299000:intron 40.0%
TTCATGAATCTATGCAGGGA+TGG - chr8_3:59984139-59984158 Msa1299000:intron 40.0%
!! ATTCTAAAATCTGCTGGTGC+AGG - chr8_3:59984189-59984208 Msa1299000:intron 40.0%
TTAGAGCTGTTGCCTTAATC+AGG - chr8_3:59984229-59984248 Msa1299000:intron 40.0%
GAACGGAGAAATCCTGATTA+AGG + chr8_3:59984244-59984263 None:intergenic 40.0%
GATTTCTCCGTTCCCTTATA+TGG - chr8_3:59984251-59984270 Msa1299000:intron 40.0%
GGTCTTCAATTATTGTGCTG+TGG - chr8_3:59984272-59984291 Msa1299000:intron 40.0%
AAGTACGGGCCTTACATAAT+TGG - chr8_3:59984306-59984325 Msa1299000:intron 40.0%
GCCTTACATAATTGGATCCT+TGG - chr8_3:59984314-59984333 Msa1299000:intron 40.0%
ACATAATTGGATCCTTGGTC+GGG - chr8_3:59984319-59984338 Msa1299000:intron 40.0%
CATCAAAAGTAGGCAAAAGG+TGG + chr8_3:59984484-59984503 None:intergenic 40.0%
CTATGCCATACTGCGAATAT+AGG - chr8_3:59984505-59984524 Msa1299000:intron 40.0%
AACGAGGAAACGTGAAAACA+TGG + chr8_3:59984706-59984725 None:intergenic 40.0%
AACCAAGATGAAGAGTCTAC+AGG + chr8_3:59984842-59984861 None:intergenic 40.0%
GAATGGAGAATCAAAACGAG+AGG + chr8_3:59985191-59985210 None:intergenic 40.0%
ATAGACAACTTTGCCATGCA+GGG + chr8_3:59985439-59985458 None:intergenic 40.0%
GAAGTGAAGTTTCCATAGGT+GGG + chr8_3:59985498-59985517 None:intergenic 40.0%
! ATGAGAGTTCGTTGACTAGT+AGG - chr8_3:59986064-59986083 Msa1299000:intron 40.0%
TTTCTGTGGTTGATTGATGC+TGG - chr8_3:59986107-59986126 Msa1299000:CDS 40.0%
!! CTGGTGGTTTTACATTGCAT+TGG - chr8_3:59986126-59986145 Msa1299000:CDS 40.0%
!! GTGGTTTTACATTGCATTGG+TGG - chr8_3:59986129-59986148 Msa1299000:CDS 40.0%
TTTGCCCTATTTCAAGGTCA+GGG + chr8_3:59986205-59986224 None:intergenic 40.0%
ATTTGCCCTATTTCAAGGTC+AGG + chr8_3:59986206-59986225 None:intergenic 40.0%
!! ACCCATTTCTGGTGTTAGTT+TGG - chr8_3:59986456-59986475 Msa1299000:intron 40.0%
GCCAAACTAACACCAGAAAT+GGG + chr8_3:59986460-59986479 None:intergenic 40.0%
AGCCAAACTAACACCAGAAA+TGG + chr8_3:59986461-59986480 None:intergenic 40.0%
! AGCATTGAGAATGATCTGCT+GGG + chr8_3:59986608-59986627 None:intergenic 40.0%
!! AAGCATTGAGAATGATCTGC+TGG + chr8_3:59986609-59986628 None:intergenic 40.0%
! GGCATAAACGGTGATAATGA+CGG + chr8_3:59986659-59986678 None:intergenic 40.0%
AAAGCCCAGACTAAAACTAC+TGG + chr8_3:59986737-59986756 None:intergenic 40.0%
TCATACTGGCAAGTAGCAAA+TGG - chr8_3:59986799-59986818 Msa1299000:CDS 40.0%
GATGATGAGAGAAACGCGTT+TGG + chr8_3:59983099-59983118 None:intergenic 45.0%
! TACATTACTCGTGGTGGTGA+TGG - chr8_3:59983145-59983164 Msa1299000:three_prime_UTR 45.0%
TCACCGGAGTTATCCTTCAT+CGG + chr8_3:59983277-59983296 None:intergenic 45.0%
ATGAAGGATAACTCCGGTGA+CGG - chr8_3:59983277-59983296 Msa1299000:three_prime_UTR 45.0%
GTGTTTACCGTTAACTGTGG+TGG - chr8_3:59983405-59983424 Msa1299000:three_prime_UTR 45.0%
! GTTAACTGTGGTGGAGAAAG+TGG - chr8_3:59983414-59983433 Msa1299000:exon 45.0%
TTTGACCCAATACCACACGA+CGG + chr8_3:59983467-59983486 None:intergenic 45.0%
! CGTGTGGTATTGGGTCAAAA+TGG - chr8_3:59983468-59983487 Msa1299000:CDS 45.0%
TGGACCCTATCTCATTGACA+AGG - chr8_3:59983543-59983562 Msa1299000:CDS 45.0%
GTCTTGCAGACTCTTCATCT+TGG - chr8_3:59984676-59984695 Msa1299000:intron 45.0%
GTCCTGTAGACTCTTCATCT+TGG - chr8_3:59984837-59984856 Msa1299000:intron 45.0%
GATAGACAACTTTGCCATGC+AGG + chr8_3:59985440-59985459 None:intergenic 45.0%
GGAAGTGAAGTTTCCATAGG+TGG + chr8_3:59985499-59985518 None:intergenic 45.0%
GTGGGAAGTGAAGTTTCCAT+AGG + chr8_3:59985502-59985521 None:intergenic 45.0%
CATGCCCTGACCTTGAAATA+GGG - chr8_3:59986198-59986217 Msa1299000:CDS 45.0%
ATTGAGAATGATCTGCTGGG+CGG + chr8_3:59986605-59986624 None:intergenic 45.0%
TCACCGTTTATGCCAAGAGA+CGG - chr8_3:59986665-59986684 Msa1299000:CDS 45.0%
TTGTCGATCAACCCTTTCCA+TGG + chr8_3:59986872-59986891 None:intergenic 45.0%
!! GGATTTGATTTGAAGTCGGC+AGG - chr8_3:59987023-59987042 Msa1299000:five_prime_UTR 45.0%
!! ACGCGTTTGGTGTGATTCGA+AGG + chr8_3:59983086-59983105 None:intergenic 50.0%
GGTAAACACTCATCGGAACC+AGG + chr8_3:59983394-59983413 None:intergenic 50.0%
! AACTGTGGTGGAGAAAGTGG+AGG - chr8_3:59983417-59983436 Msa1299000:exon 50.0%
ACGATCCGTCGTGTGGTATT+GGG - chr8_3:59983459-59983478 Msa1299000:CDS 50.0%
GACAGAGACTTTCAGTCCTC+CGG - chr8_3:59983860-59983879 Msa1299000:intron 50.0%
TGCCATCTACACCCTCTATG+TGG - chr8_3:59983934-59983953 Msa1299000:intron 50.0%
GCCATCTACACCCTCTATGT+GGG - chr8_3:59983935-59983954 Msa1299000:intron 50.0%
! ACCCACATAGAGGGTGTAGA+TGG + chr8_3:59983939-59983958 None:intergenic 50.0%
ATCTACACCCTCTATGTGGG+TGG - chr8_3:59983938-59983957 Msa1299000:intron 50.0%
GCTGGAGTGACACTTGGTTA+TGG - chr8_3:59983960-59983979 Msa1299000:intron 50.0%
AATCTGCTGGTGCAGGAAAC+TGG - chr8_3:59984196-59984215 Msa1299000:intron 50.0%
AATTGGATCCTTGGTCGGGA+TGG - chr8_3:59984323-59984342 Msa1299000:intron 50.0%
CAATCTCCCACCTCAGAGTA+TGG + chr8_3:59985005-59985024 None:intergenic 50.0%
GACTGCTCTATTTCCCTGCA+TGG - chr8_3:59985423-59985442 Msa1299000:intron 50.0%
GTTTCCATAGGTGGGCATTC+AGG + chr8_3:59985490-59985509 None:intergenic 50.0%
! TTTTGCTCGTGGAACTGGGT+GGG + chr8_3:59985520-59985539 None:intergenic 50.0%
! TTTTTGCTCGTGGAACTGGG+TGG + chr8_3:59985521-59985540 None:intergenic 50.0%
! TTTTGCTCGTGGAACTGGGT+GGG + chr8_3:59985520-59985539 None:intergenic 50.0%
! TTTTTGCTCGTGGAACTGGG+TGG + chr8_3:59985521-59985540 None:intergenic 50.0%
CTGTGGTTGATTGATGCTGG+TGG - chr8_3:59986110-59986129 Msa1299000:CDS 50.0%
CTGCAGCGATGCTTACAGAT+GGG + chr8_3:59986158-59986177 None:intergenic 50.0%
TCAGGGCATGCTAAAAGCCT+TGG + chr8_3:59986188-59986207 None:intergenic 50.0%
GCATGCCCTGACCTTGAAAT+AGG - chr8_3:59986197-59986216 Msa1299000:CDS 50.0%
CAGCCGTCTCTTGGCATAAA+CGG + chr8_3:59986671-59986690 None:intergenic 50.0%
TTATGCCAAGAGACGGCTGA+AGG - chr8_3:59986672-59986691 Msa1299000:CDS 50.0%
ATGGTGCTCATTGCACTGCT+AGG - chr8_3:59986818-59986837 Msa1299000:CDS 50.0%
TTGGTGGGAAGGGTTGACAA+AGG - chr8_3:59986905-59986924 Msa1299000:five_prime_UTR 50.0%
! AAGGATAACTCCGGTGACGG+TGG - chr8_3:59983280-59983299 Msa1299000:three_prime_UTR 55.0%
TGGCGGTGGATGGAAAAAGG+AGG - chr8_3:59983300-59983319 Msa1299000:three_prime_UTR 55.0%
CACACGACGGATCGTCTTGA+CGG + chr8_3:59983454-59983473 None:intergenic 55.0%
GACGATCCGTCGTGTGGTAT+TGG - chr8_3:59983458-59983477 Msa1299000:CDS 55.0%
ACTCCAGCCACCCACATAGA+GGG + chr8_3:59983948-59983967 None:intergenic 55.0%
AGTGCCTGAATGCCCACCTA+TGG - chr8_3:59985483-59985502 Msa1299000:intron 55.0%
GCTGCAGCGATGCTTACAGA+TGG + chr8_3:59986159-59986178 None:intergenic 55.0%
ATCGCTGCAGCACTTCACCA+AGG - chr8_3:59986168-59986187 Msa1299000:CDS 55.0%
CAACTCCTTCAGCCGTCTCT+TGG + chr8_3:59986680-59986699 None:intergenic 55.0%
GCTCATTGCACTGCTAGGAG+AGG - chr8_3:59986823-59986842 Msa1299000:CDS 55.0%
! GATAACTCCGGTGACGGTGG+CGG - chr8_3:59983283-59983302 Msa1299000:three_prime_UTR 60.0%
! CGGTGGCGGTGGATGGAAAA+AGG - chr8_3:59983297-59983316 Msa1299000:three_prime_UTR 60.0%
CGTCAAGACGATCCGTCGTG+TGG - chr8_3:59983452-59983471 Msa1299000:CDS 60.0%
ACACCCTCTATGTGGGTGGC+TGG - chr8_3:59983942-59983961 Msa1299000:intron 60.0%
CACTCCAGCCACCCACATAG+AGG + chr8_3:59983949-59983968 None:intergenic 60.0%
TGGGTGGCTGGAGTGACACT+TGG - chr8_3:59983954-59983973 Msa1299000:intron 60.0%
TTCTGGCACCATCCCGACCA+AGG + chr8_3:59984334-59984353 None:intergenic 60.0%
GAGACGGCTGAAGGAGTTGC+AGG - chr8_3:59986681-59986700 Msa1299000:CDS 60.0%
ACGGCTGAAGGAGTTGCAGG+AGG - chr8_3:59986684-59986703 Msa1299000:CDS 60.0%
GCTGAAGGAGTTGCAGGAGG+AGG - chr8_3:59986687-59986706 Msa1299000:CDS 60.0%
! AACTCCGGTGACGGTGGCGG+TGG - chr8_3:59983286-59983305 Msa1299000:three_prime_UTR 70.0%
CCATCCACCGCCACCGTCAC+CGG + chr8_3:59983293-59983312 None:intergenic 70.0%
! CCGGTGACGGTGGCGGTGGA+TGG - chr8_3:59983290-59983309 Msa1299000:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 59982992 59987171 59982992 ID=Msa1299000;Name=Msa1299000
chr8_3 mRNA 59982992 59987171 59982992 ID=Msa1299000-mRNA-1;Parent=Msa1299000;Name=Msa1299000-mRNA-1;_AED=0.25;_eAED=0.25;_QI=285|1|1|1|1|1|4|439|308
chr8_3 exon 59982992 59983614 59982992 ID=Msa1299000-mRNA-1:exon:17427;Parent=Msa1299000-mRNA-1
chr8_3 exon 59985790 59986007 59985790 ID=Msa1299000-mRNA-1:exon:17426;Parent=Msa1299000-mRNA-1
chr8_3 exon 59986093 59986329 59986093 ID=Msa1299000-mRNA-1:exon:17425;Parent=Msa1299000-mRNA-1
chr8_3 exon 59986599 59987171 59986599 ID=Msa1299000-mRNA-1:exon:17424;Parent=Msa1299000-mRNA-1
chr8_3 five_prime_UTR 59986887 59987171 59986887 ID=Msa1299000-mRNA-1:five_prime_utr;Parent=Msa1299000-mRNA-1
chr8_3 CDS 59986599 59986886 59986599 ID=Msa1299000-mRNA-1:cds;Parent=Msa1299000-mRNA-1
chr8_3 CDS 59986093 59986329 59986093 ID=Msa1299000-mRNA-1:cds;Parent=Msa1299000-mRNA-1
chr8_3 CDS 59985790 59986007 59985790 ID=Msa1299000-mRNA-1:cds;Parent=Msa1299000-mRNA-1
chr8_3 CDS 59983431 59983614 59983431 ID=Msa1299000-mRNA-1:cds;Parent=Msa1299000-mRNA-1
chr8_3 three_prime_UTR 59982992 59983430 59982992 ID=Msa1299000-mRNA-1:three_prime_utr;Parent=Msa1299000-mRNA-1
Gene Sequence

>Msa1299000

ATGAAGGATAACTCCGGTGACGGTGGCGGTGGATGGAAAAAGGAGGTTGTTTCGGACGTAACTATCACAATTGAAGCTGATGATGATAACAAAGGGGATTATATCAAATTGATGCCTGGTTCCGATGAGTGTTTACCGTTAACTGTGGTGGAGAAAGTGGAGGAGTGTTCTCTGCCGTCAAGACGATCCGTCGTGTGGTATTGGGTCAAAATGGTTCTGTTGTTTCTGAGTTTAGGGTTTTTGGCTGTTGTTGTTCTCAAATGGGTTGGACCCTATCTCATTGACAAGGAGGTGATTCCAATAATAAATTGGGAGACAGAGACTTTCAGTCCTCCGGTGCTTACTATTTTGTTGTTTGCTTCAGTAGCAATTTTCCCAACAATACTTTTGCCATCTACACCCTCTATGTGGGTGGCTGGAGTGACACTTGGTTATGGATTTGGGTTCTTGCTAATAATAACTGCAGCAGCTATTGGTGTGTCACTCCCTTTTATCATTGGCTCAATCTTCCATCATAAAATTGAAGGATGGTTAGAGAAGTATCCAAAGAAGGCTTCTATTCTAAAATCTGCTGGTGCAGGAAACTGGTTTCATCAGTTTAGAGCTGTTGCCTTAATCAGGATTTCTCCGTTCCCTTATATGGTCTTCAATTATTGTGCTGTGGCAACAAATGTTAAGTACGGGCCTTACATAATTGGATCCTTGGTCGGGATGGTGCCAGAAATATTTGTTGCAATCTATACGGGAATTTTGATTAAGACATTGGCCGATGCTTCAAGTGAAAGTCAATCTCTATCCGCCCAGCAGATCATTCTCAATGCTTTAGGCTTCTGTTTAACTGTGGTTACAACCGTCATTATCACCGTTTATGCCAAGAGACGGCTGAAGGAGTTGCAGGAGGAGGACAAGATGTTGCTGCTGCAATAG
Protein sequence

>Msa1299000

MKDNSGDGGGGWKKEVVSDVTITIEADDDNKGDYIKLMPGSDECLPLTVVEKVEECSLPSRRSVVWYWVKMVLLFLSLGFLAVVVLKWVGPYLIDKEVIPIINWETETFSPPVLTILLFASVAIFPTILLPSTPSMWVAGVTLGYGFGFLLIITAAAIGVSLPFIIGSIFHHKIEGWLEKYPKKASILKSAGAGNWFHQFRAVALIRISPFPYMVFNYCAVATNVKYGPYIIGSLVGMVPEIFVAIYTGILIKTLADASSESQSLSAQQIILNALGFCLTVVTTVIITVYAKRRLKELQEEDKMLLLQ*