AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0443430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0443430 MtrunA17_Chr3g0079781 96.522 575 19 1 1 575 1 574 0.0 1111
Msa0443430 MtrunA17_Chr8g0369251 45.522 268 131 6 311 575 94 349 7.47e-56 192
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0443430 AT4G26455.1 33.871 496 215 18 62 550 75 464 1.40e-52 187
Msa0443430 AT5G56210.1 33.542 480 259 19 75 544 53 482 5.16e-40 153
Msa0443430 AT3G13360.1 28.909 550 267 18 37 575 23 459 6.20e-31 126
Msa0443430 AT3G13360.2 28.909 550 267 18 37 575 82 518 1.34e-30 125

Find 151 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATCGAAACCCTAGAATT+TGG 0.121917 3_3:+14160347 None:intergenic
GCACAACAACCCCAGAATTT+TGG 0.122979 3_3:+14156695 None:intergenic
TTTCAATTTGATGGCAATTT+TGG 0.164092 3_3:-14160024 Msa0443430:CDS
TATCAATCTCCCTGAATTTC+TGG 0.176921 3_3:+14157394 None:intergenic
AAGGGTTCTGATGAGAAATT+AGG 0.189886 3_3:-14160048 Msa0443430:CDS
AAATTACAGTGAATTATTTA+AGG 0.190432 3_3:+14156501 None:intergenic
TGGATTCATTTATTATTAAA+AGG 0.208145 3_3:-14160317 Msa0443430:intron
TGATGTTAATCTTGTTCTTT+TGG 0.219585 3_3:-14156738 Msa0443430:CDS
AATTCACTGTAATTTGAGTT+TGG 0.245002 3_3:-14156493 Msa0443430:three_prime_UTR
TTGAAATTGAAATATGGATT+TGG 0.250648 3_3:-14160121 Msa0443430:exon
TCACAGTTATCCCAAAATTC+TGG 0.258625 3_3:-14156706 Msa0443430:CDS
GAAACAACATGTAAACCTTT+TGG 0.279724 3_3:-14157205 Msa0443430:CDS
TTGCAGAAGTCCAGAAATTC+AGG 0.282661 3_3:-14157404 Msa0443430:intron
AGAAGGAATTGTTGCTGAAT+TGG 0.284953 3_3:-14159986 Msa0443430:CDS
GTGTTGGCAGATTCTTCTTT+AGG 0.285615 3_3:+14157093 None:intergenic
AGATTTACAATTTACATTAT+TGG 0.289460 3_3:-14156956 Msa0443430:CDS
TGAAGAAATGGAAGAGAATT+AGG 0.289879 3_3:-14159912 Msa0443430:CDS
GGGTTTCGATTTCCAATTCA+TGG 0.292858 3_3:-14160337 Msa0443430:five_prime_UTR
CCATCAAAATCCCAAATTCT+AGG 0.296085 3_3:-14160358 Msa0443430:five_prime_UTR
AAGGAGTTGAAATTGAAATA+TGG 0.313980 3_3:-14160127 Msa0443430:exon
ATTCACTGTAATTTGAGTTT+GGG 0.317485 3_3:-14156492 Msa0443430:three_prime_UTR
GAATTAGGAGGAATGTTGTT+AGG 0.319758 3_3:-14159897 Msa0443430:CDS
AACCTTCTTCAAGTGCTTCC+TGG 0.322107 3_3:+14159134 None:intergenic
GATGGGTCTTCGAGCGCGTT+TGG 0.325703 3_3:-14159766 Msa0443430:CDS
TGAAATTGAAATATGGATTT+GGG 0.329850 3_3:-14160120 Msa0443430:exon
TTCTGATGGGCATGCAATCC+GGG 0.332805 3_3:-14159731 Msa0443430:CDS
GCTGGTTATGGCAACGAAAA+TGG 0.341150 3_3:-14159289 Msa0443430:CDS
TTTCTGATGGGCATGCAATC+CGG 0.344143 3_3:-14159732 Msa0443430:CDS
AAATCGAAACCCTAGAATTT+GGG 0.347830 3_3:+14160348 None:intergenic
ACCCCTCTTCAAAACCTTAC+CGG 0.347847 3_3:+14159849 None:intergenic
CACTTAACTGAGTCGTCTTC+TGG 0.349970 3_3:+14157357 None:intergenic
GGTATCACTGCTGTTGATCT+TGG 0.353511 3_3:-14157318 Msa0443430:CDS
ATCCTTTGATCGAGTCTATC+AGG 0.353744 3_3:-14159171 Msa0443430:CDS
TAATAAATGAATCCATGAAT+TGG 0.360380 3_3:+14160325 None:intergenic
GGAACTTGAAGCAGCTTGAT+TGG 0.364131 3_3:+14157251 None:intergenic
CGAGTCTATCAGGAGCCTTC+AGG 0.370738 3_3:-14159161 Msa0443430:CDS
AAGAGGGGTTTATCTGGGTC+TGG 0.371412 3_3:-14159835 Msa0443430:CDS
GCAACAATTCCTTCTTGATC+TGG 0.373469 3_3:+14159994 None:intergenic
GAAGGAATTGTTGCTGAATT+GGG 0.375674 3_3:-14159985 Msa0443430:CDS
GAAGTGAATCACGATGAAAA+TGG 0.378652 3_3:-14160075 Msa0443430:CDS
AAATTAGGGTTTCAATTTGA+TGG 0.382765 3_3:-14160033 Msa0443430:CDS
TGATGCAGAACTTGAAGGTT+GGG 0.388770 3_3:-14156981 Msa0443430:CDS
ATGGGTCTTCGAGCGCGTTT+GGG 0.392314 3_3:-14159765 Msa0443430:CDS
TGAAAATCTGCGGGGTGTTA+AGG 0.392736 3_3:-14159797 Msa0443430:CDS
GGAAAATTCTATTTCCAGCT+TGG 0.397790 3_3:-14159455 Msa0443430:CDS
TGCTTGCTACGAAGGATTCT+AGG 0.403279 3_3:-14157155 Msa0443430:CDS
AAGGGGTTGGATTGAAGAAA+TGG 0.411286 3_3:-14159924 Msa0443430:CDS
CACAGTTATCCCAAAATTCT+GGG 0.411552 3_3:-14156705 Msa0443430:CDS
TCTAGATATGCAGTTGGATC+TGG 0.415064 3_3:-14159694 Msa0443430:CDS
TCAAGCTGCTTCAAGTTCCT+TGG 0.417796 3_3:-14157247 Msa0443430:CDS
TTTAGTGAACTCGGCTCAAA+AGG 0.417990 3_3:-14159548 Msa0443430:CDS
AAGGAAGATGAAGCTGGTTA+TGG 0.424672 3_3:-14159301 Msa0443430:CDS
TTTAGTACAGTTACTAGTAA+TGG 0.427692 3_3:-14159397 Msa0443430:CDS
AGGGTTCTGATGAGAAATTA+GGG 0.427817 3_3:-14160047 Msa0443430:CDS
CAGGAGCCTTCAGGCTGTCC+AGG 0.431092 3_3:-14159152 Msa0443430:CDS
GATCATAGATGCGGAGAGTA+AGG 0.438137 3_3:-14156887 Msa0443430:CDS
GCTGCAGAAAAGAGTATGTA+AGG 0.439143 3_3:-14156788 Msa0443430:CDS
CAGATTCGAGATCCAACTAT+AGG 0.441179 3_3:-14159429 Msa0443430:CDS
AATTAGGAGGAATGTTGTTA+GGG 0.443869 3_3:-14159896 Msa0443430:CDS
TCTAAAGGGGCACCAAGAAA+AGG 0.446044 3_3:-14159943 Msa0443430:CDS
CCTTTCTCATGCCTCACCTT+CGG 0.447954 3_3:+14159601 None:intergenic
CTAAAGGGGCACCAAGAAAA+GGG 0.449350 3_3:-14159942 Msa0443430:CDS
CCTCCAGCTTGCTTTCCAAA+AGG 0.451050 3_3:+14157190 None:intergenic
ATAACCAGCTTCATCTTCCT+TGG 0.452817 3_3:+14159303 None:intergenic
CATCAAAATCCCAAATTCTA+GGG 0.461231 3_3:-14160357 Msa0443430:five_prime_UTR
TGGTGAAGATGAAGATCTAC+AGG 0.463551 3_3:-14159269 Msa0443430:CDS
TGGTGATAGTTTAGTAATTG+AGG 0.464590 3_3:-14156821 Msa0443430:CDS
TCACGATGAAAATGGAATCA+AGG 0.466507 3_3:-14160067 Msa0443430:CDS
AGGAAGCTGTGAATTCTAAA+GGG 0.468369 3_3:-14159957 Msa0443430:CDS
AAAGACACCTTGCCTATAGT+TGG 0.470804 3_3:+14159417 None:intergenic
ATGAGAAAGGCCGTGGTAGT+AGG 0.471311 3_3:-14159588 Msa0443430:CDS
GATCTTCAGCACTTGTAGAC+TGG 0.475844 3_3:+14159191 None:intergenic
CTCTACTTCTTTATAACCTA+GGG 0.478091 3_3:+14157071 None:intergenic
TAAGGTGATGCAGAACTTGA+AGG 0.479356 3_3:-14156986 Msa0443430:CDS
GAGGAAGCTGTGAATTCTAA+AGG 0.479514 3_3:-14159958 Msa0443430:CDS
ACTCTACTTCTTTATAACCT+AGG 0.480486 3_3:+14157070 None:intergenic
TTGACTCTTCCACCACCTCC+AGG 0.481693 3_3:+14159487 None:intergenic
AATTCGAGTGCTGATGAATC+CGG 0.484587 3_3:-14159868 Msa0443430:CDS
TTCTGCGGCAAATCAGTCTT+GGG 0.487223 3_3:-14159242 Msa0443430:CDS
CTTGAAACAGCCTTGACTAC+TGG 0.491839 3_3:-14157123 Msa0443430:CDS
ATTGAGAGCTCTGCGAAACC+TGG 0.496174 3_3:-14159505 Msa0443430:CDS
TATGGATTTGGGAAGTGAAT+CGG 0.504956 3_3:-14160109 Msa0443430:CDS
GTCCAGGAAGCACTTGAAGA+AGG 0.506986 3_3:-14159136 Msa0443430:intron
AGAGGGGTTTATCTGGGTCT+GGG 0.510213 3_3:-14159834 Msa0443430:CDS
ATTCTGCGGCAAATCAGTCT+TGG 0.512363 3_3:-14159243 Msa0443430:CDS
TTCTTTATAACCTAGGGTGT+TGG 0.512371 3_3:+14157077 None:intergenic
CGTTACCTCCATCATAAACA+TGG 0.514459 3_3:+14159356 None:intergenic
GTGATGCAGAACTTGAAGGT+TGG 0.516204 3_3:-14156982 Msa0443430:CDS
TTCGAAGAATTTAGTGAACT+CGG 0.516442 3_3:-14159557 Msa0443430:CDS
GAAGAACAAAGCAGAAGAGT+TGG 0.517816 3_3:-14156854 Msa0443430:CDS
GCAAGGCGTGCTTGCTACGA+AGG 0.529878 3_3:-14157163 Msa0443430:CDS
TGTTGCTGAATTGGGTAGTG+AGG 0.530555 3_3:-14159977 Msa0443430:CDS
CACGATGAAAATGGAATCAA+GGG 0.532616 3_3:-14160066 Msa0443430:CDS
TCTGCGAAACCTGGAGGTGG+TGG 0.534968 3_3:-14159496 Msa0443430:CDS
CCGAAGGTGAGGCATGAGAA+AGG 0.536005 3_3:-14159601 Msa0443430:CDS
TCTCGAATCTGAATCCAAGC+TGG 0.540931 3_3:+14159441 None:intergenic
GAAGAATCTGCCAACACCCT+AGG 0.548150 3_3:-14157087 Msa0443430:CDS
CAAAAGGTTCAGCAAGGAAA+GGG 0.549338 3_3:-14159532 Msa0443430:CDS
ACTAGTAATGGAAAACATAG+TGG 0.551305 3_3:-14159385 Msa0443430:CDS
TGCAGAAGTCCAGAAATTCA+GGG 0.553635 3_3:-14157403 Msa0443430:intron
AAGTGTAGCAGTGCATCTGC+TGG 0.556258 3_3:-14157339 Msa0443430:CDS
AGATTAACATCATGAACTGT+AGG 0.559173 3_3:+14156749 None:intergenic
TCAAAAGGTTCAGCAAGGAA+AGG 0.565767 3_3:-14159533 Msa0443430:CDS
CTTCGGCTCACTAGCTGCAG+TGG 0.566787 3_3:+14159618 None:intergenic
AATTTGTATTCCTACTACCA+CGG 0.566898 3_3:+14159578 None:intergenic
GCATCACCTTAGCGATGGCT+AGG 0.570346 3_3:+14156998 None:intergenic
CACTGCAGCTAGTGAGCCGA+AGG 0.570950 3_3:-14159617 Msa0443430:CDS
TTCACCAAGGAAGATGAAGC+TGG 0.571532 3_3:-14159307 Msa0443430:CDS
GGTGTAAAACCAGATCAAGA+AGG 0.572427 3_3:-14160003 Msa0443430:CDS
GTGCTTCCTGGACAGCCTGA+AGG 0.572548 3_3:+14159146 None:intergenic
TAGGCAAAAGGTTGAAGCTG+AGG 0.572695 3_3:-14157028 Msa0443430:CDS
GTGAGGCATGAGAAAGGCCG+TGG 0.577436 3_3:-14159595 Msa0443430:CDS
TAGAATCTGTACTAGAACCC+CGG 0.580227 3_3:+14159713 None:intergenic
GAGTGCTGATGAATCCGGTA+AGG 0.582886 3_3:-14159863 Msa0443430:CDS
GAATTTGAGTGAAAATCTGC+GGG 0.583607 3_3:-14159806 Msa0443430:CDS
AGAAATGGAAGAGAATTAGG+AGG 0.592844 3_3:-14159909 Msa0443430:CDS
GGGGCACCAAGAAAAGGGGT+TGG 0.594012 3_3:-14159937 Msa0443430:CDS
AGGAAACTTACCAGTAGTCA+AGG 0.594780 3_3:+14157113 None:intergenic
CACAAAATGATAATAGAACA+AGG 0.596347 3_3:+14156529 None:intergenic
ACAGATTCTAGATATGCAGT+TGG 0.598937 3_3:-14159700 Msa0443430:CDS
CTCCTGATAGACTCGATCAA+AGG 0.598987 3_3:+14159169 None:intergenic
AGCTCTGCGAAACCTGGAGG+TGG 0.601277 3_3:-14159499 Msa0443430:CDS
TCTGATGGGCATGCAATCCG+GGG 0.601884 3_3:-14159730 Msa0443430:CDS
CGAATTTGAGTGAAAATCTG+CGG 0.603111 3_3:-14159807 Msa0443430:CDS
AGAAGTAGAGTACGAGATCG+AGG 0.604863 3_3:-14157058 Msa0443430:CDS
TGGAAGAGTCAAGTTTGAGA+AGG 0.606509 3_3:-14159476 Msa0443430:CDS
GATGCAGAACTTGAAGGTTG+GGG 0.607398 3_3:-14156980 Msa0443430:CDS
GGATTTGGGAAGTGAATCGG+TGG 0.608119 3_3:-14160106 Msa0443430:CDS
ACTGTCCGAAAATCAAGCAC+AGG 0.613967 3_3:-14156920 Msa0443430:CDS
GTTACCTCCATCATAAACAT+GGG 0.616232 3_3:+14159357 None:intergenic
CAGCTAGTGAGCCGAAGGTG+AGG 0.618013 3_3:-14159612 Msa0443430:CDS
ACTCGATATCTGAAACTCCA+AGG 0.620943 3_3:+14157230 None:intergenic
ATTCGGAGAATAGTGAGGAT+CGG 0.621517 3_3:-14159654 Msa0443430:CDS
AGCAAGCTGGAGGAGTTGCA+AGG 0.625840 3_3:-14157180 Msa0443430:CDS
TCGAGATCCAACTATAGGCA+AGG 0.632294 3_3:-14159424 Msa0443430:CDS
TGAATACCTAGCCATCGCTA+AGG 0.643417 3_3:-14157004 Msa0443430:CDS
AGGGTAAGTTCTATGTAACA+AGG 0.645891 3_3:+14156588 None:intergenic
TAAAGGGGCACCAAGAAAAG+GGG 0.646182 3_3:-14159941 Msa0443430:CDS
GTTCTGCATCACCTTAGCGA+TGG 0.647863 3_3:+14156993 None:intergenic
ACAGTTATCCCAAAATTCTG+GGG 0.661233 3_3:-14156704 Msa0443430:CDS
TTACCTCCATCATAAACATG+GGG 0.669072 3_3:+14159358 None:intergenic
TCGGCTCAAAAGGTTCAGCA+AGG 0.672328 3_3:-14159538 Msa0443430:CDS
GGAAGCTGTGAATTCTAAAG+GGG 0.673317 3_3:-14159956 Msa0443430:CDS
GACTGATTCGGAGAATAGTG+AGG 0.677186 3_3:-14159659 Msa0443430:CDS
GAGAGCTCTGCGAAACCTGG+AGG 0.685277 3_3:-14159502 Msa0443430:CDS
TCTCAACAAGATCATAGATG+CGG 0.693153 3_3:-14156896 Msa0443430:CDS
TACTAATGAACATTTCACCA+AGG 0.694692 3_3:-14159320 Msa0443430:CDS
GTTTATGATGGAGGTAACGA+TGG 0.695425 3_3:-14159352 Msa0443430:CDS
AGATCTACAGGAGAATTCTG+CGG 0.721794 3_3:-14159257 Msa0443430:CDS
TACCTCCATCATAAACATGG+GGG 0.749426 3_3:+14159359 None:intergenic
AATTTGAGTGAAAATCTGCG+GGG 0.860716 3_3:-14159805 Msa0443430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAGTAATATGTATTATA+AGG + chr3_3:14158304-14158323 None:intergenic 10.0%
!! AGATTAAAAATGAAATAATA+TGG + chr3_3:14158667-14158686 None:intergenic 10.0%
!! TGGATTCATTTATTATTAAA+AGG - chr3_3:14156561-14156580 Msa0443430:three_prime_UTR 15.0%
!! TAAAAAGAGTAATGAAAAAA+TGG + chr3_3:14156633-14156652 None:intergenic 15.0%
!!! TGTGATATGTTTTATTTTTA+TGG - chr3_3:14157781-14157800 Msa0443430:intron 15.0%
!!! GTGATATGTTTTATTTTTAT+GGG - chr3_3:14157782-14157801 Msa0443430:intron 15.0%
!! ATAAAATAAGAAGGTTTATT+AGG + chr3_3:14158036-14158055 None:intergenic 15.0%
!! GTTAATTAGTTATGTTAATA+AGG + chr3_3:14158251-14158270 None:intergenic 15.0%
!!! AGTTTTAAATATAGTATTGT+TGG + chr3_3:14158447-14158466 None:intergenic 15.0%
!! AATACTTTCATAAAACATAA+TGG + chr3_3:14158817-14158836 None:intergenic 15.0%
!! GTATGAATCATATATATAAT+TGG - chr3_3:14159155-14159174 Msa0443430:CDS 15.0%
!! AGATTTACAATTTACATTAT+TGG - chr3_3:14159922-14159941 Msa0443430:CDS 15.0%
!! AAATTACAGTGAATTATTTA+AGG + chr3_3:14160380-14160399 None:intergenic 15.0%
!! TAATAAATGAATCCATGAAT+TGG + chr3_3:14156556-14156575 None:intergenic 20.0%
!! CTAAATATGAGAACAAAAAT+CGG + chr3_3:14156728-14156747 None:intergenic 20.0%
!! TTGAAATTGAAATATGGATT+TGG - chr3_3:14156757-14156776 Msa0443430:CDS 20.0%
!! TGAAATTGAAATATGGATTT+GGG - chr3_3:14156758-14156777 Msa0443430:CDS 20.0%
!! AATAAAACATATCACACAAT+AGG + chr3_3:14157777-14157796 None:intergenic 20.0%
!! TAACACGATATAAAATAAGA+AGG + chr3_3:14158045-14158064 None:intergenic 20.0%
!!! ATCAGTGAAATATTTTGAAT+TGG + chr3_3:14158227-14158246 None:intergenic 20.0%
!!! ATTTTGCATATTATTTCTTG+AGG - chr3_3:14158608-14158627 Msa0443430:intron 20.0%
!!! TTTTTTCTTGTAGCTTTTTA+CGG + chr3_3:14158855-14158874 None:intergenic 20.0%
!! GAATTATATGTTTAGAGAAA+AGG - chr3_3:14158945-14158964 Msa0443430:intron 20.0%
!!! TATTTCATCTTTTCTACAAT+AGG + chr3_3:14158981-14159000 None:intergenic 20.0%
! TTGTTCTCATATTTAGCTAA+AGG - chr3_3:14156732-14156751 Msa0443430:CDS 25.0%
! AAGGAGTTGAAATTGAAATA+TGG - chr3_3:14156751-14156770 Msa0443430:CDS 25.0%
! AAATTAGGGTTTCAATTTGA+TGG - chr3_3:14156845-14156864 Msa0443430:CDS 25.0%
!!! TTTCAATTTGATGGCAATTT+TGG - chr3_3:14156854-14156873 Msa0443430:CDS 25.0%
! TTTAGTACAGTTACTAGTAA+TGG - chr3_3:14157481-14157500 Msa0443430:intron 25.0%
! ATATATGTTGCATTTACTCA+AGG + chr3_3:14157876-14157895 None:intergenic 25.0%
!! AACCTAGTATATAATTTGTC+TGG - chr3_3:14157993-14158012 Msa0443430:intron 25.0%
! ATTAAACAGAACCAAATACA+TGG + chr3_3:14158075-14158094 None:intergenic 25.0%
! GTGGTTAATATAATGTCAAA+TGG - chr3_3:14158495-14158514 Msa0443430:intron 25.0%
! AATGAAATAATATGGCCAAA+TGG + chr3_3:14158659-14158678 None:intergenic 25.0%
!!! AAAGTATTGAACTGAATGTT+GGG - chr3_3:14158829-14158848 Msa0443430:intron 25.0%
! AGATGAAATAATCTTGTTCT+TGG - chr3_3:14158991-14159010 Msa0443430:intron 25.0%
! CAAACCATTAAGAAAGATAT+TGG - chr3_3:14159115-14159134 Msa0443430:intron 25.0%
! AAGTCCAATATCTTTCTTAA+TGG + chr3_3:14159122-14159141 None:intergenic 25.0%
!! ATTGGACTTGAATGATTTTT+AGG - chr3_3:14159133-14159152 Msa0443430:intron 25.0%
! AATAAGTGCAAAATAGCATA+TGG + chr3_3:14159264-14159283 None:intergenic 25.0%
!! TGATGTTAATCTTGTTCTTT+TGG - chr3_3:14160140-14160159 Msa0443430:intron 25.0%
!! CAAAATGAAACTAATTTTGC+AGG + chr3_3:14160218-14160237 None:intergenic 25.0%
! CACAAAATGATAATAGAACA+AGG + chr3_3:14160352-14160371 None:intergenic 25.0%
!! AATTCACTGTAATTTGAGTT+TGG - chr3_3:14160385-14160404 Msa0443430:five_prime_UTR 25.0%
!! ATTCACTGTAATTTGAGTTT+GGG - chr3_3:14160386-14160405 Msa0443430:five_prime_UTR 25.0%
!! GATGGATTTGCGATTTTATA+GGG + chr3_3:14156505-14156524 None:intergenic 30.0%
!!! TGATGGATTTGCGATTTTAT+AGG + chr3_3:14156506-14156525 None:intergenic 30.0%
CATCAAAATCCCAAATTCTA+GGG - chr3_3:14156521-14156540 Msa0443430:three_prime_UTR 30.0%
AAATCGAAACCCTAGAATTT+GGG + chr3_3:14156533-14156552 None:intergenic 30.0%
TGAAGAAATGGAAGAGAATT+AGG - chr3_3:14156966-14156985 Msa0443430:CDS 30.0%
AATTAGGAGGAATGTTGTTA+GGG - chr3_3:14156982-14157001 Msa0443430:CDS 30.0%
GTGTTAAGGAAAAAAACGAT+GGG - chr3_3:14157095-14157114 Msa0443430:CDS 30.0%
AATTTGTATTCCTACTACCA+CGG + chr3_3:14157303-14157322 None:intergenic 30.0%
TTCGAAGAATTTAGTGAACT+CGG - chr3_3:14157321-14157340 Msa0443430:CDS 30.0%
! ACTAGTAATGGAAAACATAG+TGG - chr3_3:14157493-14157512 Msa0443430:intron 30.0%
TACTAATGAACATTTCACCA+AGG - chr3_3:14157558-14157577 Msa0443430:intron 30.0%
!!! TTGTTCTCACTTTTTTCTTC+AGG + chr3_3:14157667-14157686 None:intergenic 30.0%
AAACATATCACACAATAGGA+CGG + chr3_3:14157773-14157792 None:intergenic 30.0%
TTACTCAAGGATTATAACAC+CGG + chr3_3:14157863-14157882 None:intergenic 30.0%
TTGTCAACAAACTGATGATA+AGG + chr3_3:14157901-14157920 None:intergenic 30.0%
!! ATCATCAGTTTGTTGACAAT+TGG - chr3_3:14157902-14157921 Msa0443430:intron 30.0%
AGCCAGACAAATTATATACT+AGG + chr3_3:14157998-14158017 None:intergenic 30.0%
!! TTGGTTCTGTTTAATCAGTT+TGG - chr3_3:14158080-14158099 Msa0443430:intron 30.0%
TCTGTTTAATCAGTTTGGTT+TGG - chr3_3:14158085-14158104 Msa0443430:intron 30.0%
! TTATAAGGTATCTGTGAGTA+AGG + chr3_3:14158289-14158308 None:intergenic 30.0%
! TTTAGAGCCTTAAGTTATGA+TGG - chr3_3:14158353-14158372 Msa0443430:intron 30.0%
!! GAAAGTATTGAACTGAATGT+TGG - chr3_3:14158828-14158847 Msa0443430:intron 30.0%
TATATGTTTAGAGAAAAGGC+AGG - chr3_3:14158949-14158968 Msa0443430:intron 30.0%
ATATGTTTAGAGAAAAGGCA+GGG - chr3_3:14158950-14158969 Msa0443430:intron 30.0%
TGAAATAATCTTGTTCTTGG+TGG - chr3_3:14158994-14159013 Msa0443430:intron 30.0%
! TCTTAATGGTTTGACTTTAC+TGG + chr3_3:14159108-14159127 None:intergenic 30.0%
!!! ATGAAGTTCTGTCTTTTTTC+TGG - chr3_3:14159395-14159414 Msa0443430:CDS 30.0%
TACAAATTGGTTATCAGCAA+TGG + chr3_3:14159447-14159466 None:intergenic 30.0%
! GAAACAACATGTAAACCTTT+TGG - chr3_3:14159673-14159692 Msa0443430:CDS 30.0%
CTCTACTTCTTTATAACCTA+GGG + chr3_3:14159810-14159829 None:intergenic 30.0%
ACTCTACTTCTTTATAACCT+AGG + chr3_3:14159811-14159830 None:intergenic 30.0%
TGGTGATAGTTTAGTAATTG+AGG - chr3_3:14160057-14160076 Msa0443430:CDS 30.0%
AGATTAACATCATGAACTGT+AGG + chr3_3:14160132-14160151 None:intergenic 30.0%
!!! AGAACTTACCCTTCTTTTTT+AGG - chr3_3:14160301-14160320 Msa0443430:intron 30.0%
!!! GAACTTACCCTTCTTTTTTA+GGG - chr3_3:14160302-14160321 Msa0443430:intron 30.0%
!! CCTAGAATTTGGGATTTTGA+TGG + chr3_3:14156523-14156542 None:intergenic 35.0%
CCATCAAAATCCCAAATTCT+AGG - chr3_3:14156520-14156539 Msa0443430:three_prime_UTR 35.0%
GAAATCGAAACCCTAGAATT+TGG + chr3_3:14156534-14156553 None:intergenic 35.0%
TATGGATTTGGGAAGTGAAT+CGG - chr3_3:14156769-14156788 Msa0443430:CDS 35.0%
GAAGTGAATCACGATGAAAA+TGG - chr3_3:14156803-14156822 Msa0443430:CDS 35.0%
TCACGATGAAAATGGAATCA+AGG - chr3_3:14156811-14156830 Msa0443430:CDS 35.0%
CACGATGAAAATGGAATCAA+GGG - chr3_3:14156812-14156831 Msa0443430:CDS 35.0%
! AAGGGTTCTGATGAGAAATT+AGG - chr3_3:14156830-14156849 Msa0443430:CDS 35.0%
! AGGGTTCTGATGAGAAATTA+GGG - chr3_3:14156831-14156850 Msa0443430:CDS 35.0%
AGAAGGAATTGTTGCTGAAT+TGG - chr3_3:14156892-14156911 Msa0443430:CDS 35.0%
GAAGGAATTGTTGCTGAATT+GGG - chr3_3:14156893-14156912 Msa0443430:CDS 35.0%
AGGAAGCTGTGAATTCTAAA+GGG - chr3_3:14156921-14156940 Msa0443430:CDS 35.0%
AGAAATGGAAGAGAATTAGG+AGG - chr3_3:14156969-14156988 Msa0443430:CDS 35.0%
GAATTAGGAGGAATGTTGTT+AGG - chr3_3:14156981-14157000 Msa0443430:CDS 35.0%
!! TTTTGAAGAGGGGTTTATCT+GGG - chr3_3:14157038-14157057 Msa0443430:CDS 35.0%
CGAATTTGAGTGAAAATCTG+CGG - chr3_3:14157071-14157090 Msa0443430:CDS 35.0%
GAATTTGAGTGAAAATCTGC+GGG - chr3_3:14157072-14157091 Msa0443430:CDS 35.0%
AATTTGAGTGAAAATCTGCG+GGG - chr3_3:14157073-14157092 Msa0443430:CDS 35.0%
GGTGTTAAGGAAAAAAACGA+TGG - chr3_3:14157094-14157113 Msa0443430:CDS 35.0%
! GGAATGTAGTGTTTTCTGAT+GGG - chr3_3:14157134-14157153 Msa0443430:CDS 35.0%
ACAGATTCTAGATATGCAGT+TGG - chr3_3:14157178-14157197 Msa0443430:CDS 35.0%
!!! TTGGATCTGGTTTTGTTGTT+GGG - chr3_3:14157197-14157216 Msa0443430:CDS 35.0%
!!! TTTTGTTGTTGGGACTGATT+CGG - chr3_3:14157207-14157226 Msa0443430:CDS 35.0%
GGAAAATTCTATTTCCAGCT+TGG - chr3_3:14157423-14157442 Msa0443430:intron 35.0%
TTACCTCCATCATAAACATG+GGG + chr3_3:14157523-14157542 None:intergenic 35.0%
GTTACCTCCATCATAAACAT+GGG + chr3_3:14157524-14157543 None:intergenic 35.0%
CAACAATCTCAATTGCAGAT+TGG + chr3_3:14157835-14157854 None:intergenic 35.0%
AATTGAGATTGTTGTGTTGC+CGG - chr3_3:14157841-14157860 Msa0443430:intron 35.0%
GAAGGTTTATTAGGCAGTTA+GGG + chr3_3:14158027-14158046 None:intergenic 35.0%
AGAAGGTTTATTAGGCAGTT+AGG + chr3_3:14158028-14158047 None:intergenic 35.0%
GTTAAGCCAAACCATGTATT+TGG - chr3_3:14158061-14158080 Msa0443430:intron 35.0%
ACAGAACCAAATACATGGTT+TGG + chr3_3:14158070-14158089 None:intergenic 35.0%
AGATTATATTGCCACCTTAC+AGG + chr3_3:14158160-14158179 None:intergenic 35.0%
! TGACTAGCAGTTGCAAATTT+TGG - chr3_3:14158187-14158206 Msa0443430:intron 35.0%
GTGTAGACCATCATAACTTA+AGG + chr3_3:14158363-14158382 None:intergenic 35.0%
CATGTAGAGAAATAAAGTGC+TGG + chr3_3:14158546-14158565 None:intergenic 35.0%
TCATTTGTACATGACTTGAG+AGG - chr3_3:14158632-14158651 Msa0443430:intron 35.0%
!! AATCTCATGCATTGACTTGA+TGG - chr3_3:14158682-14158701 Msa0443430:intron 35.0%
!! ATCTCATGCATTGACTTGAT+GGG - chr3_3:14158683-14158702 Msa0443430:intron 35.0%
ATCATAAGATCCAAGTGAGA+TGG - chr3_3:14158725-14158744 Msa0443430:intron 35.0%
GTTGGAATGGATCAATGTTT+CGG - chr3_3:14158747-14158766 Msa0443430:intron 35.0%
TTGGAATGGATCAATGTTTC+GGG - chr3_3:14158748-14158767 Msa0443430:intron 35.0%
CACAAATGAGAATACTGCAT+TGG - chr3_3:14158886-14158905 Msa0443430:intron 35.0%
! ATAATCTTGTTCTTGGTGGT+TGG - chr3_3:14158998-14159017 Msa0443430:intron 35.0%
ATCGTAGATGTAGATCAGAT+GGG - chr3_3:14159052-14159071 Msa0443430:intron 35.0%
ACATGACTTGATCCAACAAT+AGG - chr3_3:14159185-14159204 Msa0443430:CDS 35.0%
GCATCATTGTTTCCTATTGT+TGG + chr3_3:14159200-14159219 None:intergenic 35.0%
AGGAAACAATGATGCAAAGT+AGG - chr3_3:14159205-14159224 Msa0443430:CDS 35.0%
TATGCCAATAAACTACTTGC+AGG + chr3_3:14159367-14159386 None:intergenic 35.0%
TGGAAGAAAAGAATCGAGTA+TGG - chr3_3:14159415-14159434 Msa0443430:CDS 35.0%
TATCAATCTCCCTGAATTTC+TGG + chr3_3:14159487-14159506 None:intergenic 35.0%
TTCTTTATAACCTAGGGTGT+TGG + chr3_3:14159804-14159823 None:intergenic 35.0%
TCTCAACAAGATCATAGATG+CGG - chr3_3:14159982-14160001 Msa0443430:CDS 35.0%
GAAGAGTTGGAAAAATACTG+TGG - chr3_3:14160037-14160056 Msa0443430:CDS 35.0%
TCACAGTTATCCCAAAATTC+TGG - chr3_3:14160172-14160191 Msa0443430:intron 35.0%
CACAGTTATCCCAAAATTCT+GGG - chr3_3:14160173-14160192 Msa0443430:intron 35.0%
ACAGTTATCCCAAAATTCTG+GGG - chr3_3:14160174-14160193 Msa0443430:intron 35.0%
! CTAATTTTGCAGGCTTAAGT+CGG + chr3_3:14160208-14160227 None:intergenic 35.0%
AGGGTAAGTTCTATGTAACA+AGG + chr3_3:14160293-14160312 None:intergenic 35.0%
!!! TTACCCTTCTTTTTTAGGGT+AGG - chr3_3:14160306-14160325 Msa0443430:intron 35.0%
!!! TACCCTTCTTTTTTAGGGTA+GGG - chr3_3:14160307-14160326 Msa0443430:intron 35.0%
GGGTTTCGATTTCCAATTCA+TGG - chr3_3:14156541-14156560 Msa0443430:three_prime_UTR 40.0%
GGTGTAAAACCAGATCAAGA+AGG - chr3_3:14156875-14156894 Msa0443430:CDS 40.0%
GCAACAATTCCTTCTTGATC+TGG + chr3_3:14156887-14156906 None:intergenic 40.0%
GAGGAAGCTGTGAATTCTAA+AGG - chr3_3:14156920-14156939 Msa0443430:CDS 40.0%
! GGAAGCTGTGAATTCTAAAG+GGG - chr3_3:14156922-14156941 Msa0443430:CDS 40.0%
! TTCAATCCAACCCCTTTTCT+TGG + chr3_3:14156950-14156969 None:intergenic 40.0%
AAGGGGTTGGATTGAAGAAA+TGG - chr3_3:14156954-14156973 Msa0443430:CDS 40.0%
!! AATTCGAGTGCTGATGAATC+CGG - chr3_3:14157010-14157029 Msa0443430:CDS 40.0%
!!! AATCCGGTAAGGTTTTGAAG+AGG - chr3_3:14157026-14157045 Msa0443430:CDS 40.0%
!!! ATCCGGTAAGGTTTTGAAGA+GGG - chr3_3:14157027-14157046 Msa0443430:CDS 40.0%
!!! GTTTTGAAGAGGGGTTTATC+TGG - chr3_3:14157037-14157056 Msa0443430:CDS 40.0%
! GGGAATGTAGTGTTTTCTGA+TGG - chr3_3:14157133-14157152 Msa0443430:CDS 40.0%
TAGAATCTGTACTAGAACCC+CGG + chr3_3:14157168-14157187 None:intergenic 40.0%
TCTAGATATGCAGTTGGATC+TGG - chr3_3:14157184-14157203 Msa0443430:CDS 40.0%
!!! GTTGGATCTGGTTTTGTTGT+TGG - chr3_3:14157196-14157215 Msa0443430:CDS 40.0%
ATTCGGAGAATAGTGAGGAT+CGG - chr3_3:14157224-14157243 Msa0443430:CDS 40.0%
TTTAGTGAACTCGGCTCAAA+AGG - chr3_3:14157330-14157349 Msa0443430:CDS 40.0%
TCAAAAGGTTCAGCAAGGAA+AGG - chr3_3:14157345-14157364 Msa0443430:CDS 40.0%
CAAAAGGTTCAGCAAGGAAA+GGG - chr3_3:14157346-14157365 Msa0443430:CDS 40.0%
TGGAAGAGTCAAGTTTGAGA+AGG - chr3_3:14157402-14157421 Msa0443430:intron 40.0%
CAGATTCGAGATCCAACTAT+AGG - chr3_3:14157449-14157468 Msa0443430:intron 40.0%
AAAGACACCTTGCCTATAGT+TGG + chr3_3:14157464-14157483 None:intergenic 40.0%
TACCTCCATCATAAACATGG+GGG + chr3_3:14157522-14157541 None:intergenic 40.0%
CGTTACCTCCATCATAAACA+TGG + chr3_3:14157525-14157544 None:intergenic 40.0%
! GTTTATGATGGAGGTAACGA+TGG - chr3_3:14157526-14157545 Msa0443430:intron 40.0%
ATAACCAGCTTCATCTTCCT+TGG + chr3_3:14157578-14157597 None:intergenic 40.0%
AAGGAAGATGAAGCTGGTTA+TGG - chr3_3:14157577-14157596 Msa0443430:intron 40.0%
TGGTGAAGATGAAGATCTAC+AGG - chr3_3:14157609-14157628 Msa0443430:intron 40.0%
AGATCTACAGGAGAATTCTG+CGG - chr3_3:14157621-14157640 Msa0443430:intron 40.0%
ATCCTTTGATCGAGTCTATC+AGG - chr3_3:14157707-14157726 Msa0443430:intron 40.0%
AATTGCAGATTGGCAACAAG+AGG + chr3_3:14157825-14157844 None:intergenic 40.0%
TGTCAATTAAGCTGCTAGCA+AGG - chr3_3:14157950-14157969 Msa0443430:intron 40.0%
CAAAAACACCATCTAGTAGC+AGG + chr3_3:14158124-14158143 None:intergenic 40.0%
TATGATGGTCTACACTCTAC+AGG - chr3_3:14158368-14158387 Msa0443430:intron 40.0%
CAGCACAGATCTAAATATGC+AGG + chr3_3:14158475-14158494 None:intergenic 40.0%
CTGCATATTTAGATCTGTGC+TGG - chr3_3:14158473-14158492 Msa0443430:intron 40.0%
CATATTTAGATCTGTGCTGG+TGG - chr3_3:14158476-14158495 Msa0443430:intron 40.0%
!! TCTCATGCATTGACTTGATG+GGG - chr3_3:14158684-14158703 Msa0443430:intron 40.0%
TAAGATCCAAGTGAGATGGT+TGG - chr3_3:14158729-14158748 Msa0443430:intron 40.0%
CATCGTAGATGTAGATCAGA+TGG - chr3_3:14159051-14159070 Msa0443430:intron 40.0%
TCGTAGATGTAGATCAGATG+GGG - chr3_3:14159053-14159072 Msa0443430:intron 40.0%
TCTTCCTCAATGTCAAGCAA+TGG + chr3_3:14159085-14159104 None:intergenic 40.0%
! CTGCAAGAGCACATACAAAT+TGG + chr3_3:14159460-14159479 None:intergenic 40.0%
TTGCAGAAGTCCAGAAATTC+AGG - chr3_3:14159474-14159493 Msa0443430:CDS 40.0%
TGCAGAAGTCCAGAAATTCA+GGG - chr3_3:14159475-14159494 Msa0443430:CDS 40.0%
! ACTCGATATCTGAAACTCCA+AGG + chr3_3:14159651-14159670 None:intergenic 40.0%
!! AAACCTTTTGGAAAGCAAGC+TGG - chr3_3:14159685-14159704 Msa0443430:CDS 40.0%
AGGAAACTTACCAGTAGTCA+AGG + chr3_3:14159768-14159787 None:intergenic 40.0%
! GTGTTGGCAGATTCTTCTTT+AGG + chr3_3:14159788-14159807 None:intergenic 40.0%
! ACGAGATCGAGGATCTTTTT+AGG - chr3_3:14159831-14159850 Msa0443430:CDS 40.0%
!! CGAGGATCTTTTTAGGCAAA+AGG - chr3_3:14159838-14159857 Msa0443430:CDS 40.0%
TAAGGTGATGCAGAACTTGA+AGG - chr3_3:14159892-14159911 Msa0443430:CDS 40.0%
TGATGCAGAACTTGAAGGTT+GGG - chr3_3:14159897-14159916 Msa0443430:CDS 40.0%
! GAGAACCTGTGCTTGATTTT+CGG + chr3_3:14159966-14159985 None:intergenic 40.0%
GAAGAACAAAGCAGAAGAGT+TGG - chr3_3:14160024-14160043 Msa0443430:CDS 40.0%
! GCTGCAGAAAAGAGTATGTA+AGG - chr3_3:14160090-14160109 Msa0443430:CDS 40.0%
! CACAACAACCCCAGAATTTT+GGG + chr3_3:14160185-14160204 None:intergenic 40.0%
!!! ACCCTTCTTTTTTAGGGTAG+GGG - chr3_3:14160308-14160327 Msa0443430:intron 40.0%
TCCCCTACCCTAAAAAAGAA+GGG + chr3_3:14160312-14160331 None:intergenic 40.0%
ATCCCCTACCCTAAAAAAGA+AGG + chr3_3:14160313-14160332 None:intergenic 40.0%
TGTTGCTGAATTGGGTAGTG+AGG - chr3_3:14156901-14156920 Msa0443430:CDS 45.0%
!! TCTAAAGGGGCACCAAGAAA+AGG - chr3_3:14156935-14156954 Msa0443430:CDS 45.0%
!! CTAAAGGGGCACCAAGAAAA+GGG - chr3_3:14156936-14156955 Msa0443430:CDS 45.0%
!! TAAAGGGGCACCAAGAAAAG+GGG - chr3_3:14156937-14156956 Msa0443430:CDS 45.0%
!!! TCCGGTAAGGTTTTGAAGAG+GGG - chr3_3:14157028-14157047 Msa0443430:CDS 45.0%
ACCCCTCTTCAAAACCTTAC+CGG + chr3_3:14157032-14157051 None:intergenic 45.0%
! TGAAAATCTGCGGGGTGTTA+AGG - chr3_3:14157081-14157100 Msa0443430:CDS 45.0%
! TTTCTGATGGGCATGCAATC+CGG - chr3_3:14157146-14157165 Msa0443430:CDS 45.0%
!! GACTGATTCGGAGAATAGTG+AGG - chr3_3:14157219-14157238 Msa0443430:CDS 45.0%
TCTCGAATCTGAATCCAAGC+TGG + chr3_3:14157440-14157459 None:intergenic 45.0%
TCGAGATCCAACTATAGGCA+AGG - chr3_3:14157454-14157473 Msa0443430:intron 45.0%
GGTAACCCCCATGTTTATGA+TGG - chr3_3:14157514-14157533 Msa0443430:intron 45.0%
AACCCCCATGTTTATGATGG+AGG - chr3_3:14157517-14157536 Msa0443430:intron 45.0%
TTCACCAAGGAAGATGAAGC+TGG - chr3_3:14157571-14157590 Msa0443430:intron 45.0%
GCTGGTTATGGCAACGAAAA+TGG - chr3_3:14157589-14157608 Msa0443430:intron 45.0%
ATTCTGCGGCAAATCAGTCT+TGG - chr3_3:14157635-14157654 Msa0443430:intron 45.0%
TTCTGCGGCAAATCAGTCTT+GGG - chr3_3:14157636-14157655 Msa0443430:intron 45.0%
GATCTTCAGCACTTGTAGAC+TGG + chr3_3:14157690-14157709 None:intergenic 45.0%
CTCCTGATAGACTCGATCAA+AGG + chr3_3:14157712-14157731 None:intergenic 45.0%
AACCTTCTTCAAGTGCTTCC+TGG + chr3_3:14157747-14157766 None:intergenic 45.0%
TCTAGTAGCAGGTGAGTTCA+AGG + chr3_3:14158113-14158132 None:intergenic 45.0%
TGAACTCACCTGCTACTAGA+TGG - chr3_3:14158113-14158132 Msa0443430:intron 45.0%
GCATAAAGTTGCTGCCTGTA+AGG - chr3_3:14158143-14158162 Msa0443430:intron 45.0%
TAAAGTTGCTGCCTGTAAGG+TGG - chr3_3:14158146-14158165 Msa0443430:intron 45.0%
CAAATGGAGAATGAGCACCT+TGG - chr3_3:14158511-14158530 Msa0443430:intron 45.0%
! AGTGCTGGAGAAACTTTCCA+AGG + chr3_3:14158531-14158550 None:intergenic 45.0%
CATGACTTGAGAGGTCCATT+TGG - chr3_3:14158641-14158660 Msa0443430:intron 45.0%
! TTGACTTGATGGGGAGATAG+AGG - chr3_3:14158693-14158712 Msa0443430:intron 45.0%
TGACTTGATGGGGAGATAGA+GGG - chr3_3:14158694-14158713 Msa0443430:intron 45.0%
TCCAAGTGAGATGGTTGGAA+TGG - chr3_3:14158734-14158753 Msa0443430:intron 45.0%
TCCATTCCAACCATCTCACT+TGG + chr3_3:14158738-14158757 None:intergenic 45.0%
TGTTTAGAGAAAAGGCAGGG+TGG - chr3_3:14158953-14158972 Msa0443430:intron 45.0%
CGTAGATGTAGATCAGATGG+GGG - chr3_3:14159054-14159073 Msa0443430:intron 45.0%
TGGTCCATTGCTTGACATTG+AGG - chr3_3:14159078-14159097 Msa0443430:intron 45.0%
GCTGCCTGCAAGTAGTTTAT+TGG - chr3_3:14159360-14159379 Msa0443430:CDS 45.0%
CACTTAACTGAGTCGTCTTC+TGG + chr3_3:14159524-14159543 None:intergenic 45.0%
GGTATCACTGCTGTTGATCT+TGG - chr3_3:14159560-14159579 Msa0443430:CDS 45.0%
GGAACTTGAAGCAGCTTGAT+TGG + chr3_3:14159630-14159649 None:intergenic 45.0%
! TCAAGCTGCTTCAAGTTCCT+TGG - chr3_3:14159631-14159650 Msa0443430:CDS 45.0%
! TGCTTGCTACGAAGGATTCT+AGG - chr3_3:14159723-14159742 Msa0443430:CDS 45.0%
CTTGAAACAGCCTTGACTAC+TGG - chr3_3:14159755-14159774 Msa0443430:CDS 45.0%
AGAAGTAGAGTACGAGATCG+AGG - chr3_3:14159820-14159839 Msa0443430:CDS 45.0%
TAGGCAAAAGGTTGAAGCTG+AGG - chr3_3:14159850-14159869 Msa0443430:CDS 45.0%
TGAATACCTAGCCATCGCTA+AGG - chr3_3:14159874-14159893 Msa0443430:CDS 45.0%
GTGATGCAGAACTTGAAGGT+TGG - chr3_3:14159896-14159915 Msa0443430:CDS 45.0%
GATGCAGAACTTGAAGGTTG+GGG - chr3_3:14159898-14159917 Msa0443430:CDS 45.0%
ACTGTCCGAAAATCAAGCAC+AGG - chr3_3:14159958-14159977 Msa0443430:CDS 45.0%
GATCATAGATGCGGAGAGTA+AGG - chr3_3:14159991-14160010 Msa0443430:CDS 45.0%
! GCACAACAACCCCAGAATTT+TGG + chr3_3:14160186-14160205 None:intergenic 45.0%
GGATTTGGGAAGTGAATCGG+TGG - chr3_3:14156772-14156791 Msa0443430:CDS 50.0%
!! GAGTGCTGATGAATCCGGTA+AGG - chr3_3:14157015-14157034 Msa0443430:CDS 50.0%
AAGAGGGGTTTATCTGGGTC+TGG - chr3_3:14157043-14157062 Msa0443430:CDS 50.0%
AGAGGGGTTTATCTGGGTCT+GGG - chr3_3:14157044-14157063 Msa0443430:CDS 50.0%
! TTCTGATGGGCATGCAATCC+GGG - chr3_3:14157147-14157166 Msa0443430:CDS 50.0%
CCTTTCTCATGCCTCACCTT+CGG + chr3_3:14157280-14157299 None:intergenic 50.0%
ATGAGAAAGGCCGTGGTAGT+AGG - chr3_3:14157290-14157309 Msa0443430:CDS 50.0%
TCGGCTCAAAAGGTTCAGCA+AGG - chr3_3:14157340-14157359 Msa0443430:CDS 50.0%
ATTGAGAGCTCTGCGAAACC+TGG - chr3_3:14157373-14157392 Msa0443430:CDS 50.0%
!! GTCCAGGAAGCACTTGAAGA+AGG - chr3_3:14157742-14157761 Msa0443430:intron 50.0%
GACTTGATGGGGAGATAGAG+GGG - chr3_3:14158695-14158714 Msa0443430:intron 50.0%
ACTTGATGGGGAGATAGAGG+GGG - chr3_3:14158696-14158715 Msa0443430:intron 50.0%
GATGTAGATCAGATGGGGGA+TGG - chr3_3:14159058-14159077 Msa0443430:intron 50.0%
AAGTGTAGCAGTGCATCTGC+TGG - chr3_3:14159539-14159558 Msa0443430:CDS 50.0%
! CCTCCAGCTTGCTTTCCAAA+AGG + chr3_3:14159691-14159710 None:intergenic 50.0%
!! CCTTTTGGAAAGCAAGCTGG+AGG - chr3_3:14159688-14159707 Msa0443430:CDS 50.0%
GAAGAATCTGCCAACACCCT+AGG - chr3_3:14159791-14159810 Msa0443430:CDS 50.0%
GTTCTGCATCACCTTAGCGA+TGG + chr3_3:14159888-14159907 None:intergenic 50.0%
ATGGGTCTTCGAGCGCGTTT+GGG - chr3_3:14157113-14157132 Msa0443430:CDS 55.0%
! TCTGATGGGCATGCAATCCG+GGG - chr3_3:14157148-14157167 Msa0443430:CDS 55.0%
CCGAAGGTGAGGCATGAGAA+AGG - chr3_3:14157277-14157296 Msa0443430:CDS 55.0%
TTGACTCTTCCACCACCTCC+AGG + chr3_3:14157394-14157413 None:intergenic 55.0%
CGAGTCTATCAGGAGCCTTC+AGG - chr3_3:14157717-14157736 Msa0443430:intron 55.0%
AGCAAGCTGGAGGAGTTGCA+AGG - chr3_3:14159698-14159717 Msa0443430:CDS 55.0%
GCATCACCTTAGCGATGGCT+AGG + chr3_3:14159883-14159902 None:intergenic 55.0%
! GGGGCACCAAGAAAAGGGGT+TGG - chr3_3:14156941-14156960 Msa0443430:CDS 60.0%
GATGGGTCTTCGAGCGCGTT+TGG - chr3_3:14157112-14157131 Msa0443430:CDS 60.0%
CTTCGGCTCACTAGCTGCAG+TGG + chr3_3:14157263-14157282 None:intergenic 60.0%
CACTGCAGCTAGTGAGCCGA+AGG - chr3_3:14157261-14157280 Msa0443430:CDS 60.0%
CAGCTAGTGAGCCGAAGGTG+AGG - chr3_3:14157266-14157285 Msa0443430:CDS 60.0%
GTGAGGCATGAGAAAGGCCG+TGG - chr3_3:14157283-14157302 Msa0443430:CDS 60.0%
GAGAGCTCTGCGAAACCTGG+AGG - chr3_3:14157376-14157395 Msa0443430:CDS 60.0%
AGCTCTGCGAAACCTGGAGG+TGG - chr3_3:14157379-14157398 Msa0443430:CDS 60.0%
TCTGCGAAACCTGGAGGTGG+TGG - chr3_3:14157382-14157401 Msa0443430:CDS 60.0%
GTGCTTCCTGGACAGCCTGA+AGG + chr3_3:14157735-14157754 None:intergenic 60.0%
! GCAAGGCGTGCTTGCTACGA+AGG - chr3_3:14159715-14159734 Msa0443430:CDS 60.0%
CAGGAGCCTTCAGGCTGTCC+AGG - chr3_3:14157726-14157745 Msa0443430:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 14156430 14160470 14156430 ID=Msa0443430;Name=Msa0443430
chr3_3 mRNA 14156430 14160470 14156430 ID=Msa0443430-mRNA-1;Parent=Msa0443430;Name=Msa0443430-mRNA-1;_AED=0.00;_eAED=0.00;_QI=175|1|1|1|0.5|0.33|3|257|575
chr3_3 exon 14156430 14157420 14156430 ID=Msa0443430-mRNA-1:exon:3124;Parent=Msa0443430-mRNA-1
chr3_3 exon 14159137 14160152 14159137 ID=Msa0443430-mRNA-1:exon:3123;Parent=Msa0443430-mRNA-1
chr3_3 exon 14160318 14160470 14160318 ID=Msa0443430-mRNA-1:exon:3122;Parent=Msa0443430-mRNA-1
chr3_3 five_prime_UTR 14160318 14160470 14160318 ID=Msa0443430-mRNA-1:five_prime_utr;Parent=Msa0443430-mRNA-1
chr3_3 five_prime_UTR 14160131 14160152 14160131 ID=Msa0443430-mRNA-1:five_prime_utr;Parent=Msa0443430-mRNA-1
chr3_3 CDS 14159137 14160130 14159137 ID=Msa0443430-mRNA-1:cds;Parent=Msa0443430-mRNA-1
chr3_3 CDS 14156687 14157420 14156687 ID=Msa0443430-mRNA-1:cds;Parent=Msa0443430-mRNA-1
chr3_3 three_prime_UTR 14156430 14156686 14156430 ID=Msa0443430-mRNA-1:three_prime_utr;Parent=Msa0443430-mRNA-1
Gene Sequence

>Msa0443430

ATGGATTTGGGAAGTGAATCGGTGGAAGAGAATGAAGTGAATCACGATGAAAATGGAATCAAGGGTTCTGATGAGAAATTAGGGTTTCAATTTGATGGCAATTTTGGTGTAAAACCAGATCAAGAAGGAATTGTTGCTGAATTGGGTAGTGAGGAAGCTGTGAATTCTAAAGGGGCACCAAGAAAAGGGGTTGGATTGAAGAAATGGAAGAGAATTAGGAGGAATGTTGTTAGGGATCATAATTCGAGTGCTGATGAATCCGGTAAGGTTTTGAAGAGGGGTTTATCTGGGTCTGGGAATGCGAATTTGAGTGAAAATCTGCGGGGTGTTAAGGAAAAAAACGATGGGTCTTCGAGCGCGTTTGGGAATGTAGTGTTTTCTGATGGGCATGCAATCCGGGGTTCTAGTACAGATTCTAGATATGCAGTTGGATCTGGTTTTGTTGTTGGGACTGATTCGGAGAATAGTGAGGATCGGAGTAGTAAGTCTTCCACTGCAGCTAGTGAGCCGAAGGTGAGGCATGAGAAAGGCCGTGGTAGTAGGAATACAAATTCGAAGAATTTAGTGAACTCGGCTCAAAAGGTTCAGCAAGGAAAGGGATGTATTGAGAGCTCTGCGAAACCTGGAGGTGGTGGAAGAGTCAAGTTTGAGAAGGAAAATTCTATTTCCAGCTTGGATTCAGATTCGAGATCCAACTATAGGCAAGGTGTCTTTAGTACAGTTACTAGTAATGGAAAACATAGTGGTAACCCCCATGTTTATGATGGAGGTAACGATGGTGAAGCTCATACTAATGAACATTTCACCAAGGAAGATGAAGCTGGTTATGGCAACGAAAATGGTGAAGATGAAGATCTACAGGAGAATTCTGCGGCAAATCAGTCTTGGGATGCTCCTGAAGAAAAAAGTGAGAACAACCAGTCTACAAGTGCTGAAGATCCTTTGATCGAGTCTATCAGGAGCCTTCAGGCTGTCCAGGAAGCACTTGAAGAAGAAGTCCAGAAATTCAGGGAGATTGATACTGAAGTTGTCTCACCAGAAGACGACTCAGTTAAGTGTAGCAGTGCATCTGCTGGTATCACTGCTGTTGATCTTGGACTTCACAAGTCATTCTTATCTAGTCATTCTAGTGCAGATGAAACCAATCAAGCTGCTTCAAGTTCCTTGGAGTTTCAGATATCGAGTTTGAAACAACATGTAAACCTTTTGGAAAGCAAGCTGGAGGAGTTGCAAGGCGTGCTTGCTACGAAGGATTCTAGGATAGTTGAACTTGAAACAGCCTTGACTACTGGTAAGTTTCCTAAAGAAGAATCTGCCAACACCCTAGGTTATAAAGAAGTAGAGTACGAGATCGAGGATCTTTTTAGGCAAAAGGTTGAAGCTGAGGTTGAATACCTAGCCATCGCTAAGGTGATGCAGAACTTGAAGGTTGGGGCAGATTTACAATTTACATTATTGGAAGAACAAGAGAAACTGTCCGAAAATCAAGCACAGGTTCTCAACAAGATCATAGATGCGGAGAGTAAGGCTTCAGTGCTGAAGAACAAAGCAGAAGAGTTGGAAAAATACTGTGGTGATAGTTTAGTAATTGAGGAATCTTTTTTGCTGCAGAAAAGAGTATGTAAGGTGTCATTTTATCTTTTCCTACAGTTCATGATGTTAATCTTGTTCTTTTGGTTTCTTGTGTCACAGTTATCCCAAAATTCTGGGGTTGTTGTGCCGACTTAA

Protein sequence

>Msa0443430

MDLGSESVEENEVNHDENGIKGSDEKLGFQFDGNFGVKPDQEGIVAELGSEEAVNSKGAPRKGVGLKKWKRIRRNVVRDHNSSADESGKVLKRGLSGSGNANLSENLRGVKEKNDGSSSAFGNVVFSDGHAIRGSSTDSRYAVGSGFVVGTDSENSEDRSSKSSTAASEPKVRHEKGRGSRNTNSKNLVNSAQKVQQGKGCIESSAKPGGGGRVKFEKENSISSLDSDSRSNYRQGVFSTVTSNGKHSGNPHVYDGGNDGEAHTNEHFTKEDEAGYGNENGEDEDLQENSAANQSWDAPEEKSENNQSTSAEDPLIESIRSLQAVQEALEEEVQKFREIDTEVVSPEDDSVKCSSASAGITAVDLGLHKSFLSSHSSADETNQAASSSLEFQISSLKQHVNLLESKLEELQGVLATKDSRIVELETALTTGKFPKEESANTLGYKEVEYEIEDLFRQKVEAEVEYLAIAKVMQNLKVGADLQFTLLEEQEKLSENQAQVLNKIIDAESKASVLKNKAEELEKYCGDSLVIEESFLLQKRVCKVSFYLFLQFMMLILFFWFLVSQLSQNSGVVVPT*