AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0444400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0444400 MtrunA17_Chr3g0084161 92.670 191 14 0 1 191 1 191 4.61e-133 370
Msa0444400 MtrunA17_Chr3g0084221 75.916 191 46 0 1 191 1 191 2.27e-107 305
Msa0444400 MtrunA17_Chr3g0084191 76.804 194 38 2 1 189 1 192 3.90e-103 305
Msa0444400 MtrunA17_Chr3g0084201 71.728 191 53 1 1 191 1 190 5.19e-102 291
Msa0444400 MtrunA17_Chr8g0353131 68.947 190 59 0 2 191 3 192 8.42e-101 289
Msa0444400 MtrunA17_Chr3g0082411 57.143 63 22 1 50 107 1 63 4.41e-20 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0444400 AT3G27890.1 68.449 187 59 0 4 190 10 196 2.94e-91 265

Find 42 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTCTGCCTTGAAGTTTA+AGG 0.117582 3_3:-17325902 None:intergenic
AATCGACTATATTGATATTT+CGG 0.315855 3_3:+17325378 Msa0444400:CDS
AAATATCAATATAGTCGATT+TGG 0.331349 3_3:-17325375 None:intergenic
ATTTCTGCCTTGAAGTTTAA+GGG 0.343293 3_3:-17325901 None:intergenic
AACATCATCTTCGCCAAATC+GGG 0.347815 3_3:+17325730 Msa0444400:CDS
CATACTGGCCTCATTCGTTA+TGG 0.349761 3_3:+17324782 Msa0444400:CDS
CGCTAAAGAATGCGATTGAT+TGG 0.357043 3_3:+17325625 Msa0444400:CDS
GGTTTACCAGCCCATGCATT+TGG 0.360432 3_3:-17325660 None:intergenic
ATTAAGATTGTTGCTCTCTC+TGG 0.362873 3_3:+17324737 Msa0444400:CDS
CAACATCATCTTCGCCAAAT+CGG 0.377634 3_3:+17325729 Msa0444400:CDS
GGCTCCTCCAACACTTACTA+TGG 0.391189 3_3:-17325688 None:intergenic
TATCAAGGAAAACCCCGATT+TGG 0.397239 3_3:-17325743 None:intergenic
CTGGATGCTTAAATACATCT+AGG 0.405336 3_3:-17325794 None:intergenic
CGAAAAGCTTCAACTTCAGC+TGG 0.413282 3_3:-17325445 None:intergenic
GAGACAGAATAATTATATTC+AGG 0.417383 3_3:-17325508 None:intergenic
GTAAGTGTTGGAGGAGCCTT+TGG 0.428342 3_3:+17325693 Msa0444400:CDS
TTTAAGGGTAAATTCCTTCA+AGG 0.429920 3_3:-17325886 None:intergenic
TGAAGAGATCAAGAATAGAT+TGG 0.437949 3_3:+17325848 Msa0444400:CDS
GAATATAATTATTCTGTCTC+AGG 0.442769 3_3:+17325511 Msa0444400:CDS
GAAAGTTCTTGTGTCCTTGA+AGG 0.447891 3_3:+17325872 Msa0444400:CDS
TATTAATGAAATGAATATCA+AGG 0.449069 3_3:-17325758 None:intergenic
GCTAAAGAATGCGATTGATT+GGG 0.485585 3_3:+17325626 Msa0444400:CDS
GAATTTACCCTTAAACTTCA+AGG 0.490730 3_3:+17325894 Msa0444400:CDS
TTACCAGCCCATGCATTTGG+TGG 0.503471 3_3:-17325657 None:intergenic
AACTCTGATCTTGAGAAAGA+AGG 0.504804 3_3:+17325415 Msa0444400:CDS
CAATCAATCGCATTCTTTAG+CGG 0.506871 3_3:-17325624 None:intergenic
GTTGGAGGAGCCTTTGGTGG+AGG 0.513008 3_3:+17325699 Msa0444400:CDS
CATCAAGACCACCAAATGCA+TGG 0.519270 3_3:+17325649 Msa0444400:CDS
GTAAATTACCATAACGAATG+AGG 0.533048 3_3:-17324790 None:intergenic
AGTGTTGGAGGAGCCTTTGG+TGG 0.533206 3_3:+17325696 Msa0444400:CDS
TCAAGATCAGAGTTCAACAT+TGG 0.545865 3_3:-17325406 None:intergenic
GCTGCCATAGTAAGTGTTGG+AGG 0.554560 3_3:+17325684 Msa0444400:CDS
AGACCACCAAATGCATGGGC+TGG 0.561726 3_3:+17325654 Msa0444400:CDS
CCAACACTTACTATGGCAGC+AGG 0.570215 3_3:-17325681 None:intergenic
ATCAAGACCACCAAATGCAT+GGG 0.580578 3_3:+17325650 Msa0444400:CDS
CCTGCTGCCATAGTAAGTGT+TGG 0.586831 3_3:+17325681 Msa0444400:CDS
AATGAGGCCAGTATGAAAAG+AGG 0.609156 3_3:-17324774 None:intergenic
AATACATCTAGGTAGAACTC+AGG 0.627908 3_3:-17325783 None:intergenic
ACATCATCTTCGCCAAATCG+GGG 0.637712 3_3:+17325731 Msa0444400:CDS
TTGATTAACAAATAATGACA+AGG 0.643119 3_3:+17324711 None:intergenic
ATGTAACGATGATGGTGACT+TGG 0.649079 3_3:+17325821 Msa0444400:CDS
TGATTAACAAATAATGACAA+GGG 0.676333 3_3:+17324712 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTTTGAATATTAAATTTGA+TGG + chr3_3:17325287-17325306 Msa0444400:intron 15.0%
!!! CATTTTTTTTTTCTATTCAT+TGG + chr3_3:17325315-17325334 Msa0444400:intron 15.0%
!! TATTAATGAAATGAATATCA+AGG - chr3_3:17325761-17325780 None:intergenic 15.0%
!! TCTTTGAATATTAAATTTGA+TGG + chr3_3:17325287-17325306 Msa0444400:intron 15.0%
!!! CATTTTTTTTTTCTATTCAT+TGG + chr3_3:17325315-17325334 Msa0444400:intron 15.0%
!! TATTAATGAAATGAATATCA+AGG - chr3_3:17325761-17325780 None:intergenic 15.0%
!! GATATTGCATATTATATACA+GGG + chr3_3:17324921-17324940 Msa0444400:intron 20.0%
!! ATATTGCATATTATATACAG+GGG + chr3_3:17324922-17324941 Msa0444400:intron 20.0%
!!! TATTTTAAATGTAGAGAAGT+GGG - chr3_3:17324971-17324990 None:intergenic 20.0%
!!! ATATTTTAAATGTAGAGAAG+TGG - chr3_3:17324972-17324991 None:intergenic 20.0%
!! ACTACTTAGCAAAAAAAAAA+AGG + chr3_3:17325010-17325029 Msa0444400:intron 20.0%
!!! GTTTAACTTGTTGAAAAAAT+AGG + chr3_3:17325212-17325231 Msa0444400:intron 20.0%
!! AAATATCAATATAGTCGATT+TGG - chr3_3:17325378-17325397 None:intergenic 20.0%
!! AATCGACTATATTGATATTT+CGG + chr3_3:17325378-17325397 Msa0444400:CDS 20.0%
!! AAAAAGAATCTTATTGACAA+AGG - chr3_3:17325570-17325589 None:intergenic 20.0%
!! GATATTGCATATTATATACA+GGG + chr3_3:17324921-17324940 Msa0444400:intron 20.0%
!! ATATTGCATATTATATACAG+GGG + chr3_3:17324922-17324941 Msa0444400:intron 20.0%
!!! TATTTTAAATGTAGAGAAGT+GGG - chr3_3:17324971-17324990 None:intergenic 20.0%
!!! ATATTTTAAATGTAGAGAAG+TGG - chr3_3:17324972-17324991 None:intergenic 20.0%
!! ACTACTTAGCAAAAAAAAAA+AGG + chr3_3:17325010-17325029 Msa0444400:intron 20.0%
!!! GTTTAACTTGTTGAAAAAAT+AGG + chr3_3:17325212-17325231 Msa0444400:intron 20.0%
!! AAATATCAATATAGTCGATT+TGG - chr3_3:17325378-17325397 None:intergenic 20.0%
!! AATCGACTATATTGATATTT+CGG + chr3_3:17325378-17325397 Msa0444400:CDS 20.0%
!! AAAAAGAATCTTATTGACAA+AGG - chr3_3:17325570-17325589 None:intergenic 20.0%
!! TGAGTTTAGTTTAATTGGTA+GGG + chr3_3:17324899-17324918 Msa0444400:intron 25.0%
! GGATATTGCATATTATATAC+AGG + chr3_3:17324920-17324939 Msa0444400:intron 25.0%
! TATTGCATATTATATACAGG+GGG + chr3_3:17324923-17324942 Msa0444400:intron 25.0%
!! ATTTTAAATGTAGAGAAGTG+GGG - chr3_3:17324970-17324989 None:intergenic 25.0%
! AAACTGAGTGAATATTGTTT+AGG + chr3_3:17325053-17325072 Msa0444400:intron 25.0%
! AACTGAGTGAATATTGTTTA+GGG + chr3_3:17325054-17325073 Msa0444400:intron 25.0%
! AAAAGTTGAAATTAACCTGT+CGG + chr3_3:17325158-17325177 Msa0444400:intron 25.0%
!!! AACTTGTTGAAAAAATAGGA+CGG + chr3_3:17325216-17325235 Msa0444400:intron 25.0%
! ATTCAAAGACTCAAAATCAA+AGG - chr3_3:17325276-17325295 None:intergenic 25.0%
! GAGACAGAATAATTATATTC+AGG - chr3_3:17325511-17325530 None:intergenic 25.0%
! GAATATAATTATTCTGTCTC+AGG + chr3_3:17325511-17325530 Msa0444400:CDS 25.0%
!! TGAGTTTAGTTTAATTGGTA+GGG + chr3_3:17324899-17324918 Msa0444400:intron 25.0%
! GGATATTGCATATTATATAC+AGG + chr3_3:17324920-17324939 Msa0444400:intron 25.0%
! TATTGCATATTATATACAGG+GGG + chr3_3:17324923-17324942 Msa0444400:intron 25.0%
!! ATTTTAAATGTAGAGAAGTG+GGG - chr3_3:17324970-17324989 None:intergenic 25.0%
! AAACTGAGTGAATATTGTTT+AGG + chr3_3:17325053-17325072 Msa0444400:intron 25.0%
! AACTGAGTGAATATTGTTTA+GGG + chr3_3:17325054-17325073 Msa0444400:intron 25.0%
! AAAAGTTGAAATTAACCTGT+CGG + chr3_3:17325158-17325177 Msa0444400:intron 25.0%
!!! AACTTGTTGAAAAAATAGGA+CGG + chr3_3:17325216-17325235 Msa0444400:intron 25.0%
! ATTCAAAGACTCAAAATCAA+AGG - chr3_3:17325276-17325295 None:intergenic 25.0%
! GAGACAGAATAATTATATTC+AGG - chr3_3:17325511-17325530 None:intergenic 25.0%
! GAATATAATTATTCTGTCTC+AGG + chr3_3:17325511-17325530 Msa0444400:CDS 25.0%
GTAAATTACCATAACGAATG+AGG - chr3_3:17324793-17324812 None:intergenic 30.0%
AAGGAAAAAAAGAAGAGAAG+AGG - chr3_3:17324844-17324863 None:intergenic 30.0%
ACCAATTAAACTAAACTCAC+CGG - chr3_3:17324898-17324917 None:intergenic 30.0%
! GTGAGTTTAGTTTAATTGGT+AGG + chr3_3:17324898-17324917 Msa0444400:intron 30.0%
ATATTATATACAGGGGGTTA+GGG + chr3_3:17324929-17324948 Msa0444400:intron 30.0%
ACTGAGTGAATATTGTTTAG+GGG + chr3_3:17325055-17325074 Msa0444400:intron 30.0%
!! CTAAAATTGCGGGTTTTAAT+AGG - chr3_3:17325133-17325152 None:intergenic 30.0%
! CTATTAAAACCCGCAATTTT+AGG + chr3_3:17325131-17325150 Msa0444400:intron 30.0%
! ACTTTTCCAACCTAAAATTG+CGG - chr3_3:17325144-17325163 None:intergenic 30.0%
! TTTTCAACAAGTTAAACGAC+TGG - chr3_3:17325209-17325228 None:intergenic 30.0%
CTAAGCAAAAATGTTCTTGA+TGG + chr3_3:17325349-17325368 Msa0444400:CDS 30.0%
TGAAGAGATCAAGAATAGAT+TGG + chr3_3:17325848-17325867 Msa0444400:CDS 30.0%
TTTAAGGGTAAATTCCTTCA+AGG - chr3_3:17325889-17325908 None:intergenic 30.0%
GAATTTACCCTTAAACTTCA+AGG + chr3_3:17325894-17325913 Msa0444400:CDS 30.0%
ATTTCTGCCTTGAAGTTTAA+GGG - chr3_3:17325904-17325923 None:intergenic 30.0%
AATTTCTGCCTTGAAGTTTA+AGG - chr3_3:17325905-17325924 None:intergenic 30.0%
GTAAATTACCATAACGAATG+AGG - chr3_3:17324793-17324812 None:intergenic 30.0%
AAGGAAAAAAAGAAGAGAAG+AGG - chr3_3:17324844-17324863 None:intergenic 30.0%
ACCAATTAAACTAAACTCAC+CGG - chr3_3:17324898-17324917 None:intergenic 30.0%
! GTGAGTTTAGTTTAATTGGT+AGG + chr3_3:17324898-17324917 Msa0444400:intron 30.0%
ATATTATATACAGGGGGTTA+GGG + chr3_3:17324929-17324948 Msa0444400:intron 30.0%
ACTGAGTGAATATTGTTTAG+GGG + chr3_3:17325055-17325074 Msa0444400:intron 30.0%
!! CTAAAATTGCGGGTTTTAAT+AGG - chr3_3:17325133-17325152 None:intergenic 30.0%
! CTATTAAAACCCGCAATTTT+AGG + chr3_3:17325131-17325150 Msa0444400:intron 30.0%
! ACTTTTCCAACCTAAAATTG+CGG - chr3_3:17325144-17325163 None:intergenic 30.0%
! TTTTCAACAAGTTAAACGAC+TGG - chr3_3:17325209-17325228 None:intergenic 30.0%
CTAAGCAAAAATGTTCTTGA+TGG + chr3_3:17325349-17325368 Msa0444400:CDS 30.0%
TGAAGAGATCAAGAATAGAT+TGG + chr3_3:17325848-17325867 Msa0444400:CDS 30.0%
TTTAAGGGTAAATTCCTTCA+AGG - chr3_3:17325889-17325908 None:intergenic 30.0%
GAATTTACCCTTAAACTTCA+AGG + chr3_3:17325894-17325913 Msa0444400:CDS 30.0%
ATTTCTGCCTTGAAGTTTAA+GGG - chr3_3:17325904-17325923 None:intergenic 30.0%
AATTTCTGCCTTGAAGTTTA+AGG - chr3_3:17325905-17325924 None:intergenic 30.0%
ATTAAGATTGTTGCTCTCTC+TGG + chr3_3:17324737-17324756 Msa0444400:CDS 35.0%
CTCGAAGTAGTCATTTAGAA+AGG - chr3_3:17324863-17324882 None:intergenic 35.0%
CTTTCTAAATGACTACTTCG+AGG + chr3_3:17324861-17324880 Msa0444400:intron 35.0%
CCAATTAAACTAAACTCACC+GGG - chr3_3:17324897-17324916 None:intergenic 35.0%
CATATTATATACAGGGGGTT+AGG + chr3_3:17324928-17324947 Msa0444400:intron 35.0%
CTGAGTGAATATTGTTTAGG+GGG + chr3_3:17325056-17325075 Msa0444400:intron 35.0%
!! AATTGCGGGTTTTAATAGGT+CGG - chr3_3:17325129-17325148 None:intergenic 35.0%
!! TAAAACCCGCAATTTTAGGT+TGG + chr3_3:17325135-17325154 Msa0444400:intron 35.0%
! CTTTTCCAACCTAAAATTGC+GGG - chr3_3:17325143-17325162 None:intergenic 35.0%
TTGAAATTAACCTGTCGGAT+AGG + chr3_3:17325163-17325182 Msa0444400:intron 35.0%
GTTTAATAAACCTATCCGAC+AGG - chr3_3:17325176-17325195 None:intergenic 35.0%
TTGTTGAAAAAATAGGACGG+TGG + chr3_3:17325219-17325238 Msa0444400:intron 35.0%
TCAAGATCAGAGTTCAACAT+TGG - chr3_3:17325409-17325428 None:intergenic 35.0%
AACTCTGATCTTGAGAAAGA+AGG + chr3_3:17325415-17325434 Msa0444400:CDS 35.0%
CAATCAATCGCATTCTTTAG+CGG - chr3_3:17325627-17325646 None:intergenic 35.0%
GCTAAAGAATGCGATTGATT+GGG + chr3_3:17325626-17325645 Msa0444400:CDS 35.0%
AATACATCTAGGTAGAACTC+AGG - chr3_3:17325786-17325805 None:intergenic 35.0%
CTGGATGCTTAAATACATCT+AGG - chr3_3:17325797-17325816 None:intergenic 35.0%
! CCATCATCGTTACATTTTTC+TGG - chr3_3:17325816-17325835 None:intergenic 35.0%
CCAGAAAAATGTAACGATGA+TGG + chr3_3:17325813-17325832 Msa0444400:CDS 35.0%
ATTAAGATTGTTGCTCTCTC+TGG + chr3_3:17324737-17324756 Msa0444400:CDS 35.0%
CTCGAAGTAGTCATTTAGAA+AGG - chr3_3:17324863-17324882 None:intergenic 35.0%
CTTTCTAAATGACTACTTCG+AGG + chr3_3:17324861-17324880 Msa0444400:intron 35.0%
CCAATTAAACTAAACTCACC+GGG - chr3_3:17324897-17324916 None:intergenic 35.0%
CATATTATATACAGGGGGTT+AGG + chr3_3:17324928-17324947 Msa0444400:intron 35.0%
CTGAGTGAATATTGTTTAGG+GGG + chr3_3:17325056-17325075 Msa0444400:intron 35.0%
!! AATTGCGGGTTTTAATAGGT+CGG - chr3_3:17325129-17325148 None:intergenic 35.0%
!! TAAAACCCGCAATTTTAGGT+TGG + chr3_3:17325135-17325154 Msa0444400:intron 35.0%
! CTTTTCCAACCTAAAATTGC+GGG - chr3_3:17325143-17325162 None:intergenic 35.0%
TTGAAATTAACCTGTCGGAT+AGG + chr3_3:17325163-17325182 Msa0444400:intron 35.0%
GTTTAATAAACCTATCCGAC+AGG - chr3_3:17325176-17325195 None:intergenic 35.0%
TTGTTGAAAAAATAGGACGG+TGG + chr3_3:17325219-17325238 Msa0444400:intron 35.0%
TCAAGATCAGAGTTCAACAT+TGG - chr3_3:17325409-17325428 None:intergenic 35.0%
AACTCTGATCTTGAGAAAGA+AGG + chr3_3:17325415-17325434 Msa0444400:CDS 35.0%
CAATCAATCGCATTCTTTAG+CGG - chr3_3:17325627-17325646 None:intergenic 35.0%
GCTAAAGAATGCGATTGATT+GGG + chr3_3:17325626-17325645 Msa0444400:CDS 35.0%
AATACATCTAGGTAGAACTC+AGG - chr3_3:17325786-17325805 None:intergenic 35.0%
CTGGATGCTTAAATACATCT+AGG - chr3_3:17325797-17325816 None:intergenic 35.0%
! CCATCATCGTTACATTTTTC+TGG - chr3_3:17325816-17325835 None:intergenic 35.0%
CCAGAAAAATGTAACGATGA+TGG + chr3_3:17325813-17325832 Msa0444400:CDS 35.0%
! CGAAAAGCCTCTTTTCATAC+TGG + chr3_3:17324767-17324786 Msa0444400:CDS 40.0%
AATGAGGCCAGTATGAAAAG+AGG - chr3_3:17324777-17324796 None:intergenic 40.0%
! CCCGGTGAGTTTAGTTTAAT+TGG + chr3_3:17324894-17324913 Msa0444400:intron 40.0%
TGAATATTGTTTAGGGGGAG+AGG + chr3_3:17325061-17325080 Msa0444400:intron 40.0%
CGCTAAAGAATGCGATTGAT+TGG + chr3_3:17325625-17325644 Msa0444400:CDS 40.0%
ATCAAGACCACCAAATGCAT+GGG + chr3_3:17325650-17325669 Msa0444400:CDS 40.0%
CAACATCATCTTCGCCAAAT+CGG + chr3_3:17325729-17325748 Msa0444400:CDS 40.0%
AACATCATCTTCGCCAAATC+GGG + chr3_3:17325730-17325749 Msa0444400:CDS 40.0%
TATCAAGGAAAACCCCGATT+TGG - chr3_3:17325746-17325765 None:intergenic 40.0%
! ATGTAACGATGATGGTGACT+TGG + chr3_3:17325821-17325840 Msa0444400:CDS 40.0%
GAAAGTTCTTGTGTCCTTGA+AGG + chr3_3:17325872-17325891 Msa0444400:CDS 40.0%
! CGAAAAGCCTCTTTTCATAC+TGG + chr3_3:17324767-17324786 Msa0444400:CDS 40.0%
AATGAGGCCAGTATGAAAAG+AGG - chr3_3:17324777-17324796 None:intergenic 40.0%
! CCCGGTGAGTTTAGTTTAAT+TGG + chr3_3:17324894-17324913 Msa0444400:intron 40.0%
TGAATATTGTTTAGGGGGAG+AGG + chr3_3:17325061-17325080 Msa0444400:intron 40.0%
CGCTAAAGAATGCGATTGAT+TGG + chr3_3:17325625-17325644 Msa0444400:CDS 40.0%
ATCAAGACCACCAAATGCAT+GGG + chr3_3:17325650-17325669 Msa0444400:CDS 40.0%
CAACATCATCTTCGCCAAAT+CGG + chr3_3:17325729-17325748 Msa0444400:CDS 40.0%
AACATCATCTTCGCCAAATC+GGG + chr3_3:17325730-17325749 Msa0444400:CDS 40.0%
TATCAAGGAAAACCCCGATT+TGG - chr3_3:17325746-17325765 None:intergenic 40.0%
! ATGTAACGATGATGGTGACT+TGG + chr3_3:17325821-17325840 Msa0444400:CDS 40.0%
GAAAGTTCTTGTGTCCTTGA+AGG + chr3_3:17325872-17325891 Msa0444400:CDS 40.0%
! CATACTGGCCTCATTCGTTA+TGG + chr3_3:17324782-17324801 Msa0444400:CDS 45.0%
CTTCGAGGCTAATCAAATCC+CGG + chr3_3:17324876-17324895 Msa0444400:intron 45.0%
CTAAGTAGGGGTGGCAAAAT+AGG + chr3_3:17325089-17325108 Msa0444400:intron 45.0%
TGAAAAAATAGGACGGTGGC+AGG + chr3_3:17325223-17325242 Msa0444400:intron 45.0%
CGAAAAGCTTCAACTTCAGC+TGG - chr3_3:17325448-17325467 None:intergenic 45.0%
CATCAAGACCACCAAATGCA+TGG + chr3_3:17325649-17325668 Msa0444400:CDS 45.0%
! TTGAGCTTTTCCTCCACCAA+AGG - chr3_3:17325712-17325731 None:intergenic 45.0%
ACATCATCTTCGCCAAATCG+GGG + chr3_3:17325731-17325750 Msa0444400:CDS 45.0%
! CATACTGGCCTCATTCGTTA+TGG + chr3_3:17324782-17324801 Msa0444400:CDS 45.0%
CTTCGAGGCTAATCAAATCC+CGG + chr3_3:17324876-17324895 Msa0444400:intron 45.0%
CTAAGTAGGGGTGGCAAAAT+AGG + chr3_3:17325089-17325108 Msa0444400:intron 45.0%
TGAAAAAATAGGACGGTGGC+AGG + chr3_3:17325223-17325242 Msa0444400:intron 45.0%
CGAAAAGCTTCAACTTCAGC+TGG - chr3_3:17325448-17325467 None:intergenic 45.0%
CATCAAGACCACCAAATGCA+TGG + chr3_3:17325649-17325668 Msa0444400:CDS 45.0%
! TTGAGCTTTTCCTCCACCAA+AGG - chr3_3:17325712-17325731 None:intergenic 45.0%
ACATCATCTTCGCCAAATCG+GGG + chr3_3:17325731-17325750 Msa0444400:CDS 45.0%
GGGAGAGGAGACACTAAGTA+GGG + chr3_3:17325076-17325095 Msa0444400:intron 50.0%
GGAGAGGAGACACTAAGTAG+GGG + chr3_3:17325077-17325096 Msa0444400:intron 50.0%
GCAAAATAGGTCGAGCCTGT+CGG + chr3_3:17325102-17325121 Msa0444400:intron 50.0%
CAAAATAGGTCGAGCCTGTC+GGG + chr3_3:17325103-17325122 Msa0444400:intron 50.0%
! TTTTAATAGGTCGGCCCGAC+AGG - chr3_3:17325120-17325139 None:intergenic 50.0%
TTACCAGCCCATGCATTTGG+TGG - chr3_3:17325660-17325679 None:intergenic 50.0%
GGTTTACCAGCCCATGCATT+TGG - chr3_3:17325663-17325682 None:intergenic 50.0%
CCAACACTTACTATGGCAGC+AGG - chr3_3:17325684-17325703 None:intergenic 50.0%
CCTGCTGCCATAGTAAGTGT+TGG + chr3_3:17325681-17325700 Msa0444400:CDS 50.0%
!! GCTGCCATAGTAAGTGTTGG+AGG + chr3_3:17325684-17325703 Msa0444400:CDS 50.0%
GGCTCCTCCAACACTTACTA+TGG - chr3_3:17325691-17325710 None:intergenic 50.0%
!! GTAAGTGTTGGAGGAGCCTT+TGG + chr3_3:17325693-17325712 Msa0444400:CDS 50.0%
GGGAGAGGAGACACTAAGTA+GGG + chr3_3:17325076-17325095 Msa0444400:intron 50.0%
GGAGAGGAGACACTAAGTAG+GGG + chr3_3:17325077-17325096 Msa0444400:intron 50.0%
GCAAAATAGGTCGAGCCTGT+CGG + chr3_3:17325102-17325121 Msa0444400:intron 50.0%
CAAAATAGGTCGAGCCTGTC+GGG + chr3_3:17325103-17325122 Msa0444400:intron 50.0%
! TTTTAATAGGTCGGCCCGAC+AGG - chr3_3:17325120-17325139 None:intergenic 50.0%
TTACCAGCCCATGCATTTGG+TGG - chr3_3:17325660-17325679 None:intergenic 50.0%
GGTTTACCAGCCCATGCATT+TGG - chr3_3:17325663-17325682 None:intergenic 50.0%
CCAACACTTACTATGGCAGC+AGG - chr3_3:17325684-17325703 None:intergenic 50.0%
CCTGCTGCCATAGTAAGTGT+TGG + chr3_3:17325681-17325700 Msa0444400:CDS 50.0%
!! GCTGCCATAGTAAGTGTTGG+AGG + chr3_3:17325684-17325703 Msa0444400:CDS 50.0%
GGCTCCTCCAACACTTACTA+TGG - chr3_3:17325691-17325710 None:intergenic 50.0%
!! GTAAGTGTTGGAGGAGCCTT+TGG + chr3_3:17325693-17325712 Msa0444400:CDS 50.0%
GGGGAGAGGAGACACTAAGT+AGG + chr3_3:17325075-17325094 Msa0444400:intron 55.0%
GAGGAGACACTAAGTAGGGG+TGG + chr3_3:17325080-17325099 Msa0444400:intron 55.0%
AGACCACCAAATGCATGGGC+TGG + chr3_3:17325654-17325673 Msa0444400:CDS 55.0%
! AGTGTTGGAGGAGCCTTTGG+TGG + chr3_3:17325696-17325715 Msa0444400:CDS 55.0%
GGGGAGAGGAGACACTAAGT+AGG + chr3_3:17325075-17325094 Msa0444400:intron 55.0%
GAGGAGACACTAAGTAGGGG+TGG + chr3_3:17325080-17325099 Msa0444400:intron 55.0%
AGACCACCAAATGCATGGGC+TGG + chr3_3:17325654-17325673 Msa0444400:CDS 55.0%
! AGTGTTGGAGGAGCCTTTGG+TGG + chr3_3:17325696-17325715 Msa0444400:CDS 55.0%
GGGGGTTAGGGTTCGAAGCT+CGG + chr3_3:17324941-17324960 Msa0444400:intron 60.0%
GTTGGAGGAGCCTTTGGTGG+AGG + chr3_3:17325699-17325718 Msa0444400:CDS 60.0%
GGGGGTTAGGGTTCGAAGCT+CGG + chr3_3:17324941-17324960 Msa0444400:intron 60.0%
GTTGGAGGAGCCTTTGGTGG+AGG + chr3_3:17325699-17325718 Msa0444400:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 17324725 17325926 17324725 ID=Msa0444400;Name=Msa0444400
chr3_3 mRNA 17324725 17325926 17324725 ID=Msa0444400-mRNA-1;Parent=Msa0444400;Name=Msa0444400-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|3|0|191
chr3_3 exon 17324725 17324803 17324725 ID=Msa0444400-mRNA-1:exon:3671;Parent=Msa0444400-mRNA-1
chr3_3 exon 17325341 17325532 17325341 ID=Msa0444400-mRNA-1:exon:3672;Parent=Msa0444400-mRNA-1
chr3_3 exon 17325622 17325926 17325622 ID=Msa0444400-mRNA-1:exon:3673;Parent=Msa0444400-mRNA-1
chr3_3 CDS 17324725 17324803 17324725 ID=Msa0444400-mRNA-1:cds;Parent=Msa0444400-mRNA-1
chr3_3 CDS 17325341 17325532 17325341 ID=Msa0444400-mRNA-1:cds;Parent=Msa0444400-mRNA-1
chr3_3 CDS 17325622 17325926 17325622 ID=Msa0444400-mRNA-1:cds;Parent=Msa0444400-mRNA-1
Gene Sequence

>Msa0444400

ATGACAAGGGTGATTAAGATTGTTGCTCTCTCTGGTTCTCTTCGAAAAGCCTCTTTTCATACTGGCCTCATTCGTTATGCTATTGAGCTAAGCAAAAATGTTCTTGATGGTATCCAAATCGACTATATTGATATTTCGGACTTGCCAATGTTGAACTCTGATCTTGAGAAAGAAGGAACTTTTCCAGCTGAAGTTGAAGCTTTTCGTCAAAAGATTTTTGCAGCTGATAGTGTTCTCTTTGCTTCTCCTGAATATAATTATTCTGTCTCAGCTCCGCTAAAGAATGCGATTGATTGGGCATCAAGACCACCAAATGCATGGGCTGGTAAACCTGCTGCCATAGTAAGTGTTGGAGGAGCCTTTGGTGGAGGAAAAGCTCAACATCATCTTCGCCAAATCGGGGTTTTCCTTGATATTCATTTCATTAATAAACCTGAGTTCTACCTAGATGTATTTAAGCATCCAGAAAAATGTAACGATGATGGTGACTTGGTTGATGAAGAGATCAAGAATAGATTGGAGAAAGTTCTTGTGTCCTTGAAGGAATTTACCCTTAAACTTCAAGGCAGAAATTGA

Protein sequence

>Msa0444400

MTRVIKIVALSGSLRKASFHTGLIRYAIELSKNVLDGIQIDYIDISDLPMLNSDLEKEGTFPAEVEAFRQKIFAADSVLFASPEYNYSVSAPLKNAIDWASRPPNAWAGKPAAIVSVGGAFGGGKAQHHLRQIGVFLDIHFINKPEFYLDVFKHPEKCNDDGDLVDEEIKNRLEKVLVSLKEFTLKLQGRN*