AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0799120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0799120 MtrunA17_Chr5g0404471 93.939 264 12 1 2 265 3 262 0.0 500
Msa0799120 MtrunA17_Chr3g0144701 69.880 249 75 0 5 253 9 257 6.37e-128 365
Msa0799120 MtrunA17_Chr3g0141681 70.472 254 73 1 1 252 1 254 1.57e-127 364
Msa0799120 MtrunA17_Chr3g0141691 66.798 253 84 0 1 253 1 253 7.04e-124 355
Msa0799120 MtrunA17_Chr5g0404481 57.840 287 102 4 1 272 1 283 7.05e-112 325
Msa0799120 MtrunA17_Chr5g0404511 57.491 287 103 4 1 272 1 283 2.42e-111 323
Msa0799120 MtrunA17_Chr4g0035131 59.761 251 101 0 3 253 43 293 2.50e-110 323
Msa0799120 MtrunA17_Chr4g0035111 59.036 249 102 0 5 253 7 255 2.55e-107 314
Msa0799120 MtrunA17_Chr4g0035121 50.787 254 123 1 3 254 2 255 7.92e-88 263
Msa0799120 MtrunA17_Chr5g0409651 51.362 257 119 2 4 254 3 259 1.53e-85 258
Msa0799120 MtrunA17_Chr5g0409641 50.973 257 120 2 4 254 3 259 3.82e-85 257
Msa0799120 MtrunA17_Chr8g0369391 48.837 258 126 2 3 254 2 259 2.16e-82 250
Msa0799120 MtrunA17_Chr3g0078901 45.703 256 128 4 2 253 3 251 2.74e-75 232
Msa0799120 MtrunA17_Chr3g0078831 45.882 255 129 4 2 253 3 251 3.16e-71 221
Msa0799120 MtrunA17_Chr1g0198771 42.972 249 139 2 3 249 12 259 5.05e-66 209
Msa0799120 MtrunA17_Chr3g0078941 42.667 150 83 1 104 253 12 158 5.62e-38 133
Msa0799120 MtrunA17_Chr3g0078951 51.887 106 47 3 2 106 3 105 1.31e-24 95.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0799120 AT1G75280.1 69.960 253 74 1 3 253 4 256 1.79e-126 362
Msa0799120 AT4G39230.1 67.460 252 82 0 1 252 1 252 2.06e-124 357
Msa0799120 AT1G75290.1 67.323 254 81 1 2 253 3 256 2.04e-122 352
Msa0799120 AT1G75290.2 67.323 254 81 1 2 253 30 283 7.20e-122 352
Msa0799120 AT1G75300.1 62.963 270 80 2 2 253 3 270 1.67e-117 340
Msa0799120 AT1G19540.2 61.719 256 94 2 5 256 3 258 1.38e-107 312
Msa0799120 AT1G19540.1 62.055 253 92 2 5 253 3 255 1.96e-105 308
Msa0799120 AT4G34540.1 47.809 251 126 1 3 253 6 251 2.46e-83 252
Msa0799120 AT4G13660.1 48.062 258 128 2 2 253 7 264 2.51e-77 237
Msa0799120 AT4G13660.2 48.062 258 128 2 2 253 7 264 2.51e-77 237
Msa0799120 AT1G32100.1 48.249 257 127 2 3 253 8 264 4.51e-76 234

Find 67 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGGACATTTATGTCCATT+AGG 0.299121 5_3:-12204475 Msa0799120:five_prime_UTR
AGTTCACATGTTACAACTAA+TGG 0.308221 5_3:-12204552 Msa0799120:five_prime_UTR
AGGTTTCTCCCATCTGAATT+CGG 0.325701 5_3:-12203802 Msa0799120:CDS
GAAGCTCATAGCAGCAATAA+AGG 0.339367 5_3:-12203929 Msa0799120:CDS
CCCTACGTTTGCTTTGATTA+GGG 0.343683 5_3:-12204232 Msa0799120:CDS
ATTTCCTCTAACGCCTTTGC+CGG 0.380008 5_3:-12203673 Msa0799120:CDS
GGTTTCTCCCATCTGAATTC+GGG 0.391935 5_3:-12203801 Msa0799120:CDS
GGATTGATTAAGCTATTTGT+AGG 0.406150 5_3:+12204440 None:intergenic
ATCCTAGTCCTAGGAGGAAC+AGG 0.406954 5_3:-12204300 Msa0799120:CDS
ACCCTACGTTTGCTTTGATT+AGG 0.407851 5_3:-12204233 Msa0799120:CDS
CAACTTCTTAAGAGCATTCA+AGG 0.411478 5_3:-12203287 Msa0799120:CDS
AAGGACATTTATGTCCATTA+GGG 0.413349 5_3:-12204474 Msa0799120:five_prime_UTR
GGATACTTCCTCCCTACATT+AGG 0.421807 5_3:-12203652 Msa0799120:CDS
CGCGATAAAGTGGTTATTCT+CGG 0.431870 5_3:-12203604 Msa0799120:CDS
GTATCCGGCAAAGGCGTTAG+AGG 0.431925 5_3:+12203669 None:intergenic
CTATGTAACCTGTTCCTCCT+AGG 0.434671 5_3:+12204292 None:intergenic
TGTGAACTACTTGAAGTTGT+TGG 0.435657 5_3:+12204567 None:intergenic
CTCTTAAGAAGTTGATCCTC+TGG 0.437434 5_3:+12203296 None:intergenic
GATGTTGTTATTTCTACCCT+TGG 0.438929 5_3:-12203976 Msa0799120:CDS
CAATGAGCTCGTCTCATTGT+GGG 0.454789 5_3:-12203357 Msa0799120:CDS
AAGAGCAAAATCCTAGTCCT+AGG 0.467088 5_3:-12204309 Msa0799120:CDS
TGATCATGAAAGTCTTGTTA+AGG 0.472479 5_3:-12204013 Msa0799120:CDS
ATGTCACGGAGGAAGACATT+GGG 0.478535 5_3:-12203463 Msa0799120:CDS
ATCTCCTCCCCGCGATAAAG+TGG 0.484319 5_3:-12203614 Msa0799120:CDS
TTAGAGGAAATATAAGTGTA+AGG 0.491091 5_3:+12203685 None:intergenic
AGGACAGCACCATTCCCTAA+TGG 0.492064 5_3:+12204460 None:intergenic
TAATGTAGGGAGGAAGTATC+CGG 0.493259 5_3:+12203654 None:intergenic
TTGAAAGTCAAAACATTGGC+AGG 0.510445 5_3:+12203377 None:intergenic
GAGAATAACCACTTTATCGC+GGG 0.511116 5_3:+12203606 None:intergenic
AAACTAATGACCATTGACTA+AGG 0.523156 5_3:-12204493 Msa0799120:five_prime_UTR
ACGTCGATCCCGAATTCAGA+TGG 0.524228 5_3:+12203793 None:intergenic
GTTGTTATTTCTACCCTTGG+TGG 0.526463 5_3:-12203973 Msa0799120:CDS
AAAGTGGTTATTCTCGGAGA+TGG 0.527224 5_3:-12203598 Msa0799120:CDS
ACATAAATGTCCTTAGTCAA+TGG 0.529232 5_3:+12204483 None:intergenic
TATGTCACGGAGGAAGACAT+TGG 0.537268 5_3:-12203464 Msa0799120:CDS
TCAATGAGCTCGTCTCATTG+TGG 0.546704 5_3:-12203358 Msa0799120:CDS
CCGTCACCATGCTGTTGAGC+CGG 0.552079 5_3:-12203767 Msa0799120:CDS
CCCTAATCAAAGCAAACGTA+GGG 0.552838 5_3:+12204232 None:intergenic
CTCGGAGATGGAAATGTCAA+AGG 0.554960 5_3:-12203586 Msa0799120:intron
ATTGAAGCAAGTGCAAAAGC+AGG 0.559335 5_3:-12204258 Msa0799120:CDS
GGCTTATACAATTAAAGCAG+TGG 0.564474 5_3:-12203441 Msa0799120:CDS
CATTTATGTCCATTAGGGAA+TGG 0.565762 5_3:-12204469 Msa0799120:five_prime_UTR
CTGTGACTGTGCAGATCAAA+GGG 0.566192 5_3:+12204419 None:intergenic
AGAAGGGCAATTGAAGCTGA+AGG 0.571556 5_3:-12203712 Msa0799120:CDS
ATAGCAGCAATAAAGGAAGC+AGG 0.578178 5_3:-12203922 Msa0799120:CDS
GCTGTGACTGTGCAGATCAA+AGG 0.578724 5_3:+12204418 None:intergenic
AACCTGTTCCTCCTAGGACT+AGG 0.582530 5_3:+12204298 None:intergenic
CTAGGAGGAACAGGTTACAT+AGG 0.587363 5_3:-12204291 Msa0799120:CDS
ATCTACTTGTGCTCCACCAA+GGG 0.588479 5_3:+12203960 None:intergenic
CTCATTGAAAGTCAAAACAT+TGG 0.593708 5_3:+12203373 None:intergenic
AAAGGAAGCAGGAAACATCA+AGG 0.604544 5_3:-12203911 Msa0799120:intron
CATCTACTTGTGCTCCACCA+AGG 0.605615 5_3:+12203959 None:intergenic
CCGGCTCAACAGCATGGTGA+CGG 0.606809 5_3:+12203767 None:intergenic
CGAGAAAATTTATGTTCCAG+AGG 0.609687 5_3:-12203312 Msa0799120:CDS
CGTCGATCCCGAATTCAGAT+GGG 0.611624 5_3:+12203794 None:intergenic
TCCCTAATCAAAGCAAACGT+AGG 0.615940 5_3:+12204231 None:intergenic
TAGCTACCGGCTCAACAGCA+TGG 0.623032 5_3:+12203761 None:intergenic
AGCAAAATCCTAGTCCTAGG+AGG 0.625533 5_3:-12204306 Msa0799120:CDS
AAAGTCAAAACATTGGCAGG+AGG 0.639422 5_3:+12203380 None:intergenic
AGGGAGGAAGTATCCGGCAA+AGG 0.640257 5_3:+12203660 None:intergenic
TTTGTTGTCCTAATGTAGGG+AGG 0.648712 5_3:+12203644 None:intergenic
TGTTGTAATTAACTTAACTG+TGG 0.655800 5_3:+12204396 None:intergenic
TGTCACGGAGGAAGACATTG+GGG 0.662891 5_3:-12203462 Msa0799120:CDS
AGAATAACCACTTTATCGCG+GGG 0.675805 5_3:+12203607 None:intergenic
CGAGAATAACCACTTTATCG+CGG 0.677520 5_3:+12203605 None:intergenic
ATAACCACTTTATCGCGGGG+AGG 0.717755 5_3:+12203610 None:intergenic
TTTAGGAGTTTATGTCACGG+AGG 0.734108 5_3:-12203474 Msa0799120:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATACAATGTTTTTGA+CGG + chr5_3:12203250-12203269 None:intergenic 15.0%
!!! GGAATTTTTTTTCTTTAATT+AGG - chr5_3:12203537-12203556 Msa0799120:intron 15.0%
!! AATATTCTAATATCTATTTC+TGG - chr5_3:12203820-12203839 Msa0799120:intron 15.0%
!!! TTTTTATACAATGTTTTTGA+CGG + chr5_3:12203250-12203269 None:intergenic 15.0%
!!! GGAATTTTTTTTCTTTAATT+AGG - chr5_3:12203537-12203556 Msa0799120:intron 15.0%
!! AATATTCTAATATCTATTTC+TGG - chr5_3:12203820-12203839 Msa0799120:intron 15.0%
!! CATTGTATAAAAAATACATG+CGG - chr5_3:12203257-12203276 Msa0799120:CDS 20.0%
!!! ACTTCTTTTAATTTCTACTT+TGG - chr5_3:12203516-12203535 Msa0799120:intron 20.0%
!!! TTTTTCTTTAATTAGGATCA+TGG - chr5_3:12203544-12203563 Msa0799120:intron 20.0%
!!! ATTTCTGGTTTTGATTATAT+AGG - chr5_3:12203835-12203854 Msa0799120:intron 20.0%
!!! TTTCTGGTTTTGATTATATA+GGG - chr5_3:12203836-12203855 Msa0799120:intron 20.0%
!! CTTGAATTAGCTATATAAAT+TGG - chr5_3:12204036-12204055 Msa0799120:intron 20.0%
!!! AAACTTTTTTTCTTTCTACA+TGG - chr5_3:12204341-12204360 Msa0799120:five_prime_UTR 20.0%
!!! ACATTTGAATTTCGTATTTT+AGG - chr5_3:12204390-12204409 Msa0799120:five_prime_UTR 20.0%
!!! AAAGTATACAATTTTGTTCA+AGG + chr5_3:12204478-12204497 None:intergenic 20.0%
!! CATTGTATAAAAAATACATG+CGG - chr5_3:12203257-12203276 Msa0799120:CDS 20.0%
!!! ACTTCTTTTAATTTCTACTT+TGG - chr5_3:12203516-12203535 Msa0799120:intron 20.0%
!!! TTTTTCTTTAATTAGGATCA+TGG - chr5_3:12203544-12203563 Msa0799120:intron 20.0%
!!! ATTTCTGGTTTTGATTATAT+AGG - chr5_3:12203835-12203854 Msa0799120:intron 20.0%
!!! TTTCTGGTTTTGATTATATA+GGG - chr5_3:12203836-12203855 Msa0799120:intron 20.0%
!! CTTGAATTAGCTATATAAAT+TGG - chr5_3:12204036-12204055 Msa0799120:intron 20.0%
!!! AAACTTTTTTTCTTTCTACA+TGG - chr5_3:12204341-12204360 Msa0799120:five_prime_UTR 20.0%
!!! ACATTTGAATTTCGTATTTT+AGG - chr5_3:12204390-12204409 Msa0799120:five_prime_UTR 20.0%
!!! AAAGTATACAATTTTGTTCA+AGG + chr5_3:12204478-12204497 None:intergenic 20.0%
! TGTTGTAATTAACTTAACTG+TGG + chr5_3:12203488-12203507 None:intergenic 25.0%
!!! TCAATAAGCTTTGATTTTTC+AGG + chr5_3:12203692-12203711 None:intergenic 25.0%
!!! TATTATTTTGTTGCTATCAG+AGG - chr5_3:12204059-12204078 Msa0799120:intron 25.0%
! TTAGAGGAAATATAAGTGTA+AGG + chr5_3:12204199-12204218 None:intergenic 25.0%
!!! TATTTTAGGAGTTTATGTCA+CGG - chr5_3:12204404-12204423 Msa0799120:five_prime_UTR 25.0%
! TGTTGTAATTAACTTAACTG+TGG + chr5_3:12203488-12203507 None:intergenic 25.0%
!!! TCAATAAGCTTTGATTTTTC+AGG + chr5_3:12203692-12203711 None:intergenic 25.0%
!!! TATTATTTTGTTGCTATCAG+AGG - chr5_3:12204059-12204078 Msa0799120:intron 25.0%
! TTAGAGGAAATATAAGTGTA+AGG + chr5_3:12204199-12204218 None:intergenic 25.0%
!!! TATTTTAGGAGTTTATGTCA+CGG - chr5_3:12204404-12204423 Msa0799120:five_prime_UTR 25.0%
!! TATACAATGTTTTTGACGGA+GGG + chr5_3:12203246-12203265 None:intergenic 30.0%
!! TTATACAATGTTTTTGACGG+AGG + chr5_3:12203247-12203266 None:intergenic 30.0%
AGTTCACATGTTACAACTAA+TGG - chr5_3:12203329-12203348 Msa0799120:CDS 30.0%
! AAACTAATGACCATTGACTA+AGG - chr5_3:12203388-12203407 Msa0799120:CDS 30.0%
ACATAAATGTCCTTAGTCAA+TGG + chr5_3:12203401-12203420 None:intergenic 30.0%
TAAGGACATTTATGTCCATT+AGG - chr5_3:12203406-12203425 Msa0799120:CDS 30.0%
AAGGACATTTATGTCCATTA+GGG - chr5_3:12203407-12203426 Msa0799120:CDS 30.0%
GGATTGATTAAGCTATTTGT+AGG + chr5_3:12203444-12203463 None:intergenic 30.0%
ATTGAGAGCTTCAAAAATTC+TGG - chr5_3:12203707-12203726 Msa0799120:CDS 30.0%
!! TGATCATGAAAGTCTTGTTA+AGG - chr5_3:12203868-12203887 Msa0799120:intron 30.0%
GCAAAAAGCAAAAATCAGAA+GGG - chr5_3:12204153-12204172 Msa0799120:intron 30.0%
!! CATTTTGTTGTCCTAATGTA+GGG + chr5_3:12204243-12204262 None:intergenic 30.0%
!! ACATTTTGTTGTCCTAATGT+AGG + chr5_3:12204244-12204263 None:intergenic 30.0%
! ACAATTTTGTTCAAGGTTCT+TGG + chr5_3:12204471-12204490 None:intergenic 30.0%
CTCATTGAAAGTCAAAACAT+TGG + chr5_3:12204511-12204530 None:intergenic 30.0%
!! TATACAATGTTTTTGACGGA+GGG + chr5_3:12203246-12203265 None:intergenic 30.0%
!! TTATACAATGTTTTTGACGG+AGG + chr5_3:12203247-12203266 None:intergenic 30.0%
AGTTCACATGTTACAACTAA+TGG - chr5_3:12203329-12203348 Msa0799120:CDS 30.0%
! AAACTAATGACCATTGACTA+AGG - chr5_3:12203388-12203407 Msa0799120:CDS 30.0%
ACATAAATGTCCTTAGTCAA+TGG + chr5_3:12203401-12203420 None:intergenic 30.0%
TAAGGACATTTATGTCCATT+AGG - chr5_3:12203406-12203425 Msa0799120:CDS 30.0%
AAGGACATTTATGTCCATTA+GGG - chr5_3:12203407-12203426 Msa0799120:CDS 30.0%
GGATTGATTAAGCTATTTGT+AGG + chr5_3:12203444-12203463 None:intergenic 30.0%
ATTGAGAGCTTCAAAAATTC+TGG - chr5_3:12203707-12203726 Msa0799120:CDS 30.0%
!! TGATCATGAAAGTCTTGTTA+AGG - chr5_3:12203868-12203887 Msa0799120:intron 30.0%
GCAAAAAGCAAAAATCAGAA+GGG - chr5_3:12204153-12204172 Msa0799120:intron 30.0%
!! CATTTTGTTGTCCTAATGTA+GGG + chr5_3:12204243-12204262 None:intergenic 30.0%
!! ACATTTTGTTGTCCTAATGT+AGG + chr5_3:12204244-12204263 None:intergenic 30.0%
! ACAATTTTGTTCAAGGTTCT+TGG + chr5_3:12204471-12204490 None:intergenic 30.0%
CTCATTGAAAGTCAAAACAT+TGG + chr5_3:12204511-12204530 None:intergenic 30.0%
!! ATACAATGTTTTTGACGGAG+GGG + chr5_3:12203245-12203264 None:intergenic 35.0%
TGTGAACTACTTGAAGTTGT+TGG + chr5_3:12203317-12203336 None:intergenic 35.0%
CATTTATGTCCATTAGGGAA+TGG - chr5_3:12203412-12203431 Msa0799120:CDS 35.0%
!! GATGTTGTTATTTCTACCCT+TGG - chr5_3:12203905-12203924 Msa0799120:intron 35.0%
GGAAACATCAAGGTACAAAT+TGG - chr5_3:12203980-12203999 Msa0799120:CDS 35.0%
GGCAAAAAGCAAAAATCAGA+AGG - chr5_3:12204152-12204171 Msa0799120:intron 35.0%
GGCTTATACAATTAAAGCAG+TGG - chr5_3:12204440-12204459 Msa0799120:five_prime_UTR 35.0%
TTGAAAGTCAAAACATTGGC+AGG + chr5_3:12204507-12204526 None:intergenic 35.0%
CGAGAAAATTTATGTTCCAG+AGG - chr5_3:12204569-12204588 Msa0799120:five_prime_UTR 35.0%
!! CAACTTCTTAAGAGCATTCA+AGG - chr5_3:12204594-12204613 Msa0799120:five_prime_UTR 35.0%
!! ATACAATGTTTTTGACGGAG+GGG + chr5_3:12203245-12203264 None:intergenic 35.0%
TGTGAACTACTTGAAGTTGT+TGG + chr5_3:12203317-12203336 None:intergenic 35.0%
CATTTATGTCCATTAGGGAA+TGG - chr5_3:12203412-12203431 Msa0799120:CDS 35.0%
!! GATGTTGTTATTTCTACCCT+TGG - chr5_3:12203905-12203924 Msa0799120:intron 35.0%
GGAAACATCAAGGTACAAAT+TGG - chr5_3:12203980-12203999 Msa0799120:CDS 35.0%
GGCAAAAAGCAAAAATCAGA+AGG - chr5_3:12204152-12204171 Msa0799120:intron 35.0%
GGCTTATACAATTAAAGCAG+TGG - chr5_3:12204440-12204459 Msa0799120:five_prime_UTR 35.0%
TTGAAAGTCAAAACATTGGC+AGG + chr5_3:12204507-12204526 None:intergenic 35.0%
CGAGAAAATTTATGTTCCAG+AGG - chr5_3:12204569-12204588 Msa0799120:five_prime_UTR 35.0%
!! CAACTTCTTAAGAGCATTCA+AGG - chr5_3:12204594-12204613 Msa0799120:five_prime_UTR 35.0%
AAGAGCAAAATCCTAGTCCT+AGG - chr5_3:12203572-12203591 Msa0799120:intron 40.0%
ATTGAAGCAAGTGCAAAAGC+AGG - chr5_3:12203623-12203642 Msa0799120:CDS 40.0%
ACCCTACGTTTGCTTTGATT+AGG - chr5_3:12203648-12203667 Msa0799120:CDS 40.0%
CCCTAATCAAAGCAAACGTA+GGG + chr5_3:12203652-12203671 None:intergenic 40.0%
CCCTACGTTTGCTTTGATTA+GGG - chr5_3:12203649-12203668 Msa0799120:CDS 40.0%
TCCCTAATCAAAGCAAACGT+AGG + chr5_3:12203653-12203672 None:intergenic 40.0%
!! GTTGTTATTTCTACCCTTGG+TGG - chr5_3:12203908-12203927 Msa0799120:intron 40.0%
GAAGCTCATAGCAGCAATAA+AGG - chr5_3:12203952-12203971 Msa0799120:CDS 40.0%
ATAGCAGCAATAAAGGAAGC+AGG - chr5_3:12203959-12203978 Msa0799120:CDS 40.0%
AAAGGAAGCAGGAAACATCA+AGG - chr5_3:12203970-12203989 Msa0799120:CDS 40.0%
AGGTTTCTCCCATCTGAATT+CGG - chr5_3:12204079-12204098 Msa0799120:intron 40.0%
!! TAATGTAGGGAGGAAGTATC+CGG + chr5_3:12204230-12204249 None:intergenic 40.0%
! TTTGTTGTCCTAATGTAGGG+AGG + chr5_3:12204240-12204259 None:intergenic 40.0%
AGAATAACCACTTTATCGCG+GGG + chr5_3:12204277-12204296 None:intergenic 40.0%
GAGAATAACCACTTTATCGC+GGG + chr5_3:12204278-12204297 None:intergenic 40.0%
CGAGAATAACCACTTTATCG+CGG + chr5_3:12204279-12204298 None:intergenic 40.0%
CGCGATAAAGTGGTTATTCT+CGG - chr5_3:12204277-12204296 Msa0799120:CDS 40.0%
AAAGTGGTTATTCTCGGAGA+TGG - chr5_3:12204283-12204302 Msa0799120:CDS 40.0%
TTTAGGAGTTTATGTCACGG+AGG - chr5_3:12204407-12204426 Msa0799120:five_prime_UTR 40.0%
AAAGTCAAAACATTGGCAGG+AGG + chr5_3:12204504-12204523 None:intergenic 40.0%
! CTCTTAAGAAGTTGATCCTC+TGG + chr5_3:12204588-12204607 None:intergenic 40.0%
AAGAGCAAAATCCTAGTCCT+AGG - chr5_3:12203572-12203591 Msa0799120:intron 40.0%
ATTGAAGCAAGTGCAAAAGC+AGG - chr5_3:12203623-12203642 Msa0799120:CDS 40.0%
ACCCTACGTTTGCTTTGATT+AGG - chr5_3:12203648-12203667 Msa0799120:CDS 40.0%
CCCTAATCAAAGCAAACGTA+GGG + chr5_3:12203652-12203671 None:intergenic 40.0%
CCCTACGTTTGCTTTGATTA+GGG - chr5_3:12203649-12203668 Msa0799120:CDS 40.0%
TCCCTAATCAAAGCAAACGT+AGG + chr5_3:12203653-12203672 None:intergenic 40.0%
!! GTTGTTATTTCTACCCTTGG+TGG - chr5_3:12203908-12203927 Msa0799120:intron 40.0%
GAAGCTCATAGCAGCAATAA+AGG - chr5_3:12203952-12203971 Msa0799120:CDS 40.0%
ATAGCAGCAATAAAGGAAGC+AGG - chr5_3:12203959-12203978 Msa0799120:CDS 40.0%
AAAGGAAGCAGGAAACATCA+AGG - chr5_3:12203970-12203989 Msa0799120:CDS 40.0%
AGGTTTCTCCCATCTGAATT+CGG - chr5_3:12204079-12204098 Msa0799120:intron 40.0%
!! TAATGTAGGGAGGAAGTATC+CGG + chr5_3:12204230-12204249 None:intergenic 40.0%
! TTTGTTGTCCTAATGTAGGG+AGG + chr5_3:12204240-12204259 None:intergenic 40.0%
AGAATAACCACTTTATCGCG+GGG + chr5_3:12204277-12204296 None:intergenic 40.0%
GAGAATAACCACTTTATCGC+GGG + chr5_3:12204278-12204297 None:intergenic 40.0%
CGAGAATAACCACTTTATCG+CGG + chr5_3:12204279-12204298 None:intergenic 40.0%
CGCGATAAAGTGGTTATTCT+CGG - chr5_3:12204277-12204296 Msa0799120:CDS 40.0%
AAAGTGGTTATTCTCGGAGA+TGG - chr5_3:12204283-12204302 Msa0799120:CDS 40.0%
TTTAGGAGTTTATGTCACGG+AGG - chr5_3:12204407-12204426 Msa0799120:five_prime_UTR 40.0%
AAAGTCAAAACATTGGCAGG+AGG + chr5_3:12204504-12204523 None:intergenic 40.0%
! CTCTTAAGAAGTTGATCCTC+TGG + chr5_3:12204588-12204607 None:intergenic 40.0%
CTGTGACTGTGCAGATCAAA+GGG + chr5_3:12203465-12203484 None:intergenic 45.0%
AGCAAAATCCTAGTCCTAGG+AGG - chr5_3:12203575-12203594 Msa0799120:intron 45.0%
CTATGTAACCTGTTCCTCCT+AGG + chr5_3:12203592-12203611 None:intergenic 45.0%
CTAGGAGGAACAGGTTACAT+AGG - chr5_3:12203590-12203609 Msa0799120:CDS 45.0%
ATCTACTTGTGCTCCACCAA+GGG + chr5_3:12203924-12203943 None:intergenic 45.0%
GGTTTCTCCCATCTGAATTC+GGG - chr5_3:12204080-12204099 Msa0799120:intron 45.0%
!!! AGCCGGTAGCTAGCTTTTTT+GGG - chr5_3:12204131-12204150 Msa0799120:intron 45.0%
TGCCCAAAAAAGCTAGCTAC+CGG + chr5_3:12204136-12204155 None:intergenic 45.0%
AGAAGGGCAATTGAAGCTGA+AGG - chr5_3:12204169-12204188 Msa0799120:CDS 45.0%
ATTTCCTCTAACGCCTTTGC+CGG - chr5_3:12204208-12204227 Msa0799120:CDS 45.0%
GGATACTTCCTCCCTACATT+AGG - chr5_3:12204229-12204248 Msa0799120:CDS 45.0%
CTCGGAGATGGAAATGTCAA+AGG - chr5_3:12204295-12204314 Msa0799120:CDS 45.0%
TATGTCACGGAGGAAGACAT+TGG - chr5_3:12204417-12204436 Msa0799120:five_prime_UTR 45.0%
ATGTCACGGAGGAAGACATT+GGG - chr5_3:12204418-12204437 Msa0799120:five_prime_UTR 45.0%
TCAATGAGCTCGTCTCATTG+TGG - chr5_3:12204523-12204542 Msa0799120:five_prime_UTR 45.0%
CAATGAGCTCGTCTCATTGT+GGG - chr5_3:12204524-12204543 Msa0799120:five_prime_UTR 45.0%
CTGTGACTGTGCAGATCAAA+GGG + chr5_3:12203465-12203484 None:intergenic 45.0%
AGCAAAATCCTAGTCCTAGG+AGG - chr5_3:12203575-12203594 Msa0799120:intron 45.0%
CTATGTAACCTGTTCCTCCT+AGG + chr5_3:12203592-12203611 None:intergenic 45.0%
CTAGGAGGAACAGGTTACAT+AGG - chr5_3:12203590-12203609 Msa0799120:CDS 45.0%
ATCTACTTGTGCTCCACCAA+GGG + chr5_3:12203924-12203943 None:intergenic 45.0%
GGTTTCTCCCATCTGAATTC+GGG - chr5_3:12204080-12204099 Msa0799120:intron 45.0%
!!! AGCCGGTAGCTAGCTTTTTT+GGG - chr5_3:12204131-12204150 Msa0799120:intron 45.0%
TGCCCAAAAAAGCTAGCTAC+CGG + chr5_3:12204136-12204155 None:intergenic 45.0%
AGAAGGGCAATTGAAGCTGA+AGG - chr5_3:12204169-12204188 Msa0799120:CDS 45.0%
ATTTCCTCTAACGCCTTTGC+CGG - chr5_3:12204208-12204227 Msa0799120:CDS 45.0%
GGATACTTCCTCCCTACATT+AGG - chr5_3:12204229-12204248 Msa0799120:CDS 45.0%
CTCGGAGATGGAAATGTCAA+AGG - chr5_3:12204295-12204314 Msa0799120:CDS 45.0%
TATGTCACGGAGGAAGACAT+TGG - chr5_3:12204417-12204436 Msa0799120:five_prime_UTR 45.0%
ATGTCACGGAGGAAGACATT+GGG - chr5_3:12204418-12204437 Msa0799120:five_prime_UTR 45.0%
TCAATGAGCTCGTCTCATTG+TGG - chr5_3:12204523-12204542 Msa0799120:five_prime_UTR 45.0%
CAATGAGCTCGTCTCATTGT+GGG - chr5_3:12204524-12204543 Msa0799120:five_prime_UTR 45.0%
AGGACAGCACCATTCCCTAA+TGG + chr5_3:12203424-12203443 None:intergenic 50.0%
GCTGTGACTGTGCAGATCAA+AGG + chr5_3:12203466-12203485 None:intergenic 50.0%
ATCCTAGTCCTAGGAGGAAC+AGG - chr5_3:12203581-12203600 Msa0799120:intron 50.0%
AACCTGTTCCTCCTAGGACT+AGG + chr5_3:12203586-12203605 None:intergenic 50.0%
CATCTACTTGTGCTCCACCA+AGG + chr5_3:12203925-12203944 None:intergenic 50.0%
CGTCGATCCCGAATTCAGAT+GGG + chr5_3:12204090-12204109 None:intergenic 50.0%
ACGTCGATCCCGAATTCAGA+TGG + chr5_3:12204091-12204110 None:intergenic 50.0%
!!! GAGCCGGTAGCTAGCTTTTT+TGG - chr5_3:12204130-12204149 Msa0799120:intron 50.0%
ATAACCACTTTATCGCGGGG+AGG + chr5_3:12204274-12204293 None:intergenic 50.0%
TGTCACGGAGGAAGACATTG+GGG - chr5_3:12204419-12204438 Msa0799120:five_prime_UTR 50.0%
AGGACAGCACCATTCCCTAA+TGG + chr5_3:12203424-12203443 None:intergenic 50.0%
GCTGTGACTGTGCAGATCAA+AGG + chr5_3:12203466-12203485 None:intergenic 50.0%
ATCCTAGTCCTAGGAGGAAC+AGG - chr5_3:12203581-12203600 Msa0799120:intron 50.0%
AACCTGTTCCTCCTAGGACT+AGG + chr5_3:12203586-12203605 None:intergenic 50.0%
CATCTACTTGTGCTCCACCA+AGG + chr5_3:12203925-12203944 None:intergenic 50.0%
CGTCGATCCCGAATTCAGAT+GGG + chr5_3:12204090-12204109 None:intergenic 50.0%
ACGTCGATCCCGAATTCAGA+TGG + chr5_3:12204091-12204110 None:intergenic 50.0%
!!! GAGCCGGTAGCTAGCTTTTT+TGG - chr5_3:12204130-12204149 Msa0799120:intron 50.0%
ATAACCACTTTATCGCGGGG+AGG + chr5_3:12204274-12204293 None:intergenic 50.0%
TGTCACGGAGGAAGACATTG+GGG - chr5_3:12204419-12204438 Msa0799120:five_prime_UTR 50.0%
! GTTTTTGACGGAGGGGTCAC+TGG + chr5_3:12203238-12203257 None:intergenic 55.0%
!! TAGCTACCGGCTCAACAGCA+TGG + chr5_3:12204123-12204142 None:intergenic 55.0%
!! GTATCCGGCAAAGGCGTTAG+AGG + chr5_3:12204215-12204234 None:intergenic 55.0%
!! AGGGAGGAAGTATCCGGCAA+AGG + chr5_3:12204224-12204243 None:intergenic 55.0%
ATCTCCTCCCCGCGATAAAG+TGG - chr5_3:12204267-12204286 Msa0799120:CDS 55.0%
! GTTTTTGACGGAGGGGTCAC+TGG + chr5_3:12203238-12203257 None:intergenic 55.0%
!! TAGCTACCGGCTCAACAGCA+TGG + chr5_3:12204123-12204142 None:intergenic 55.0%
!! GTATCCGGCAAAGGCGTTAG+AGG + chr5_3:12204215-12204234 None:intergenic 55.0%
!! AGGGAGGAAGTATCCGGCAA+AGG + chr5_3:12204224-12204243 None:intergenic 55.0%
ATCTCCTCCCCGCGATAAAG+TGG - chr5_3:12204267-12204286 Msa0799120:CDS 55.0%
CCGGCTCAACAGCATGGTGA+CGG + chr5_3:12204117-12204136 None:intergenic 60.0%
CCGTCACCATGCTGTTGAGC+CGG - chr5_3:12204114-12204133 Msa0799120:intron 60.0%
CCGGCTCAACAGCATGGTGA+CGG + chr5_3:12204117-12204136 None:intergenic 60.0%
CCGTCACCATGCTGTTGAGC+CGG - chr5_3:12204114-12204133 Msa0799120:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 12203229 12204674 12203229 ID=Msa0799120;Name=Msa0799120
chr5_3 mRNA 12203229 12204674 12203229 ID=Msa0799120-mRNA-1;Parent=Msa0799120;Name=Msa0799120-mRNA-1;_AED=0.09;_eAED=0.09;_QI=334|1|0.75|1|1|1|4|0|272
chr5_3 exon 12203229 12203491 12203229 ID=Msa0799120-mRNA-1:exon:5038;Parent=Msa0799120-mRNA-1
chr5_3 exon 12203587 12203824 12203587 ID=Msa0799120-mRNA-1:exon:5037;Parent=Msa0799120-mRNA-1
chr5_3 exon 12203912 12204046 12203912 ID=Msa0799120-mRNA-1:exon:5036;Parent=Msa0799120-mRNA-1
chr5_3 exon 12204158 12204674 12204158 ID=Msa0799120-mRNA-1:exon:5035;Parent=Msa0799120-mRNA-1
chr5_3 five_prime_UTR 12204341 12204674 12204341 ID=Msa0799120-mRNA-1:five_prime_utr;Parent=Msa0799120-mRNA-1
chr5_3 CDS 12204158 12204340 12204158 ID=Msa0799120-mRNA-1:cds;Parent=Msa0799120-mRNA-1
chr5_3 CDS 12203912 12204046 12203912 ID=Msa0799120-mRNA-1:cds;Parent=Msa0799120-mRNA-1
chr5_3 CDS 12203587 12203824 12203587 ID=Msa0799120-mRNA-1:cds;Parent=Msa0799120-mRNA-1
chr5_3 CDS 12203229 12203491 12203229 ID=Msa0799120-mRNA-1:cds;Parent=Msa0799120-mRNA-1
Gene Sequence

>Msa0799120

ATGGCACAGAAGAGCAAAATCCTAGTCCTAGGAGGAACAGGTTACATAGGAAAATTCATAATTGAAGCAAGTGCAAAAGCAGGACACCCTACGTTTGCTTTGATTAGGGAGAGCACAGTTTCTCATCCTGAAAAATCAAAGCTTATTGAGAGCTTCAAAAATTCTGGAGTTACTTTGCTTTATGGTGATCTAGCTGATCATGAAAGTCTTGTTAAGGCAATTAAGCAAGTTGATGTTGTTATTTCTACCCTTGGTGGAGCACAAGTAGATGATCAAGTGAAGCTCATAGCAGCAATAAAGGAAGCAGGAAACATCAAGAGGTTTCTCCCATCTGAATTCGGGATCGACGTTGACCGTCACCATGCTGTTGAGCCGGTAGCTAGCTTTTTTGGGCAAAAAGCAAAAATCAGAAGGGCAATTGAAGCTGAAGGAATTCCTTACACTTATATTTCCTCTAACGCCTTTGCCGGATACTTCCTCCCTACATTAGGACAACAAAATGTGACATCTCCTCCCCGCGATAAAGTGGTTATTCTCGGAGATGGAAATGTCAAAGGAGTTTATGTCACGGAGGAAGACATTGGGGCTTATACAATTAAAGCAGTGGATGATCCAAGAACCTTGAACAAAATTGTATACTTTAAGCCTCCTGCCAATGTTTTGACTTTCAATGAGCTCGTCTCATTGTGGGAGAATAAAATTAAGAGCACTCTCGAGAAAATTTATGTTCCAGAGGATCAACTTCTTAAGAGCATTCAAGGTCAGTACGAACAATCTCTTTTCGACAAAAATATTTATGCTAGCAATACCCTAAAATAA

Protein sequence

>Msa0799120

MAQKSKILVLGGTGYIGKFIIEASAKAGHPTFALIRESTVSHPEKSKLIESFKNSGVTLLYGDLADHESLVKAIKQVDVVISTLGGAQVDDQVKLIAAIKEAGNIKRFLPSEFGIDVDRHHAVEPVASFFGQKAKIRRAIEAEGIPYTYISSNAFAGYFLPTLGQQNVTSPPRDKVVILGDGNVKGVYVTEEDIGAYTIKAVDDPRTLNKIVYFKPPANVLTFNELVSLWENKIKSTLEKIYVPEDQLLKSIQGQYEQSLFDKNIYASNTLK*