AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1355340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1355340 MtrunA17_Chr3g0115751 97.461 512 11 1 1 510 1 512 0.0 996
Msa1355340 MtrunA17_Chr3g0115741 87.255 510 65 0 1 510 1 510 0.0 910
Msa1355340 MtrunA17_Chr3g0115721 78.039 510 109 2 1 510 1 507 0.0 826
Msa1355340 MtrunA17_Chr3g0115781 77.843 510 112 1 1 510 1 509 0.0 817
Msa1355340 MtrunA17_Chr3g0115731 71.260 508 108 6 1 501 1 477 0.0 721
Msa1355340 MtrunA17_Chr3g0115711 66.932 502 162 2 1 502 1 498 0.0 711
Msa1355340 MtrunA17_Chr3g0078971 52.941 493 224 6 12 500 9 497 0.0 538
Msa1355340 MtrunA17_Chr4g0065311 51.129 487 233 4 13 498 8 490 0.0 525
Msa1355340 MtrunA17_Chr3g0078991 53.196 485 220 5 20 500 17 498 0.0 520
Msa1355340 MtrunA17_Chr5g0394341 50.102 491 235 7 20 504 16 502 1.49e-179 514
Msa1355340 MtrunA17_Chr5g0437021 50.932 483 233 3 20 500 17 497 4.69e-175 502
Msa1355340 MtrunA17_Chr7g0257631 52.610 479 222 4 20 497 55 529 3.67e-174 501
Msa1355340 MtrunA17_Chr5g0420841 49.184 490 242 5 20 504 15 502 3.93e-174 500
Msa1355340 MtrunA17_Chr5g0445601 52.401 479 223 4 20 497 21 495 4.39e-174 499
Msa1355340 MtrunA17_Chr5g0417611 50.716 489 234 5 20 503 17 503 5.68e-173 497
Msa1355340 MtrunA17_Chr1g0164871 49.177 486 243 3 20 503 17 500 6.39e-173 497
Msa1355340 MtrunA17_Chr1g0164851 49.689 483 239 3 20 500 17 497 7.08e-173 498
Msa1355340 MtrunA17_Chr4g0065324 50.104 479 234 4 20 497 23 497 1.66e-171 493
Msa1355340 MtrunA17_Chr4g0048411 52.147 489 228 5 20 504 17 503 2.89e-168 485
Msa1355340 MtrunA17_Chr3g0128081 49.796 490 239 5 20 504 16 503 8.43e-168 484
Msa1355340 MtrunA17_Chr3g0085971 48.081 495 250 5 15 504 10 502 3.52e-166 480
Msa1355340 MtrunA17_Chr1g0205691 48.548 482 239 7 32 508 28 505 1.18e-164 476
Msa1355340 MtrunA17_Chr1g0205671 45.652 506 263 8 1 501 1 499 1.26e-162 470
Msa1355340 MtrunA17_Chr1g0205681 45.455 506 265 7 1 501 1 500 2.45e-162 469
Msa1355340 MtrunA17_Chr8g0390261 49.068 483 239 7 21 500 21 499 2.67e-162 470
Msa1355340 MtrunA17_Chr6g0486681 46.548 507 264 7 1 504 1 503 1.27e-159 463
Msa1355340 MtrunA17_Chr6g0486671 46.548 507 264 7 1 504 1 503 1.27e-159 463
Msa1355340 MtrunA17_Chr8g0390141 47.166 494 253 7 21 510 21 510 1.28e-158 461
Msa1355340 MtrunA17_Chr4g0048051 51.919 495 229 6 20 507 17 509 1.54e-157 458
Msa1355340 MtrunA17_Chr3g0128171 48.786 453 224 5 53 499 1 451 2.33e-153 445
Msa1355340 MtrunA17_Chr3g0078791 46.868 431 204 5 74 501 17 425 3.73e-141 413
Msa1355340 MtrunA17_Chr4g0065351 50.000 336 163 4 164 498 2 333 1.67e-112 337
Msa1355340 MtrunA17_Chr3g0115771 56.230 313 92 4 153 464 5 273 1.54e-108 324
Msa1355340 MtrunA17_Chr6g0485661 30.217 460 289 9 31 480 63 500 2.35e-53 188
Msa1355340 MtrunA17_Chr4g0034681 28.310 491 311 7 30 501 34 502 1.91e-52 186
Msa1355340 MtrunA17_Chr4g0036021 28.512 484 304 10 30 494 31 491 2.01e-51 183
Msa1355340 MtrunA17_Chr8g0373531 31.002 429 262 7 91 493 65 485 3.57e-50 179
Msa1355340 MtrunA17_Chr8g0390521 27.311 476 311 9 27 490 19 471 4.20e-49 176
Msa1355340 MtrunA17_Chr3g0144361 28.247 485 303 12 30 492 32 493 1.85e-48 174
Msa1355340 MtrunA17_Chr3g0115761 73.636 110 29 0 53 162 1 110 2.87e-48 162
Msa1355340 MtrunA17_Chr4g0039651 28.632 475 300 11 27 486 46 496 5.55e-48 173
Msa1355340 MtrunA17_Chr2g0282031 29.053 475 299 11 27 490 53 500 1.53e-46 169
Msa1355340 MtrunA17_Chr5g0432581 28.395 486 301 11 31 493 24 485 8.33e-45 164
Msa1355340 MtrunA17_Chr8g0373181 26.940 464 313 5 23 486 44 481 1.75e-44 163
Msa1355340 MtrunA17_Chr4g0021771 25.988 481 314 12 23 490 51 502 7.05e-44 162
Msa1355340 MtrunA17_Chr4g0065341 50.370 135 67 0 20 154 21 155 1.46e-41 146
Msa1355340 MtrunA17_Chr4g0032021 28.986 483 299 14 25 488 95 552 2.71e-41 155
Msa1355340 MtrunA17_Chr7g0214451 26.176 489 318 11 32 508 39 496 1.02e-40 153
Msa1355340 MtrunA17_Chr7g0259471 27.674 430 283 9 63 488 66 471 1.23e-40 152
Msa1355340 MtrunA17_Chr1g0213631 26.700 397 277 8 105 494 48 437 8.14e-40 150
Msa1355340 MtrunA17_Chr1g0213611 26.176 489 332 11 28 508 78 545 1.02e-38 148
Msa1355340 MtrunA17_Chr6g0457781 26.681 476 304 10 20 486 99 538 5.75e-38 146
Msa1355340 MtrunA17_Chr7g0250881 25.490 459 307 10 32 486 71 498 2.59e-37 144
Msa1355340 MtrunA17_Chr7g0259221 28.325 406 271 8 85 486 82 471 8.39e-37 142
Msa1355340 MtrunA17_Chr8g0373191 28.011 357 250 2 130 486 104 453 1.76e-36 140
Msa1355340 MtrunA17_Chr1g0155221 26.406 409 281 4 85 486 89 484 3.04e-36 140
Msa1355340 MtrunA17_Chr5g0403831 26.818 440 292 11 78 493 65 498 3.84e-35 137
Msa1355340 MtrunA17_Chr2g0303731 30.233 344 214 7 33 367 33 359 4.86e-35 138
Msa1355340 MtrunA17_Chr5g0446681 45.455 165 55 2 20 184 16 145 1.96e-34 131
Msa1355340 MtrunA17_Chr5g0446681 47.260 146 74 2 359 501 135 280 1.26e-33 129
Msa1355340 MtrunA17_Chr2g0286721 26.942 412 272 7 84 486 88 479 3.64e-34 134
Msa1355340 MtrunA17_Chr2g0303701 30.341 323 205 6 33 352 33 338 3.85e-34 135
Msa1355340 MtrunA17_Chr8g0376601 29.167 360 228 7 1 352 1 341 6.38e-33 132
Msa1355340 MtrunA17_Chr4g0066581 25.495 404 286 6 85 486 92 482 1.09e-32 130
Msa1355340 MtrunA17_Chr8g0376631 29.878 328 207 7 33 354 33 343 1.45e-32 131
Msa1355340 MtrunA17_Chr7g0273281 25.000 404 287 7 85 486 102 491 1.90e-32 130
Msa1355340 MtrunA17_Chr4g0004821 25.870 460 305 8 31 486 41 468 2.15e-31 126
Msa1355340 MtrunA17_Chr8g0376611 32.016 253 167 3 105 352 22 274 4.32e-31 126
Msa1355340 MtrunA17_Chr7g0228781 39.535 172 67 2 20 154 32 203 3.31e-30 117
Msa1355340 MtrunA17_Chr3g0119401 26.866 402 277 9 90 486 139 528 1.15e-28 119
Msa1355340 MtrunA17_Chr2g0290181 27.066 351 232 6 33 375 34 368 3.72e-27 115
Msa1355340 MtrunA17_Chr6g0486021 24.675 385 273 7 105 486 112 482 5.75e-27 114
Msa1355340 MtrunA17_Chr3g0121674 25.081 307 209 7 205 504 2 294 1.18e-23 101
Msa1355340 MtrunA17_Chr2g0290161 26.394 269 162 7 110 369 28 269 3.21e-20 93.6
Msa1355340 MtrunA17_Chr5g0434231 28.977 176 100 2 84 259 4 154 3.69e-18 81.6
Msa1355340 MtrunA17_Chr5g0404191 25.207 242 157 3 23 264 47 264 3.32e-17 82.4
Msa1355340 MtrunA17_Chr3g0144261 33.333 156 97 4 110 261 69 221 6.67e-17 84.0
Msa1355340 MtrunA17_Chr3g0144261 25.210 238 145 7 266 484 488 711 2.15e-11 66.6
Msa1355340 MtrunA17_Chr8g0370141 27.778 234 147 6 26 256 4 218 7.34e-17 82.4
Msa1355340 MtrunA17_Chr5g0407441 27.119 236 150 7 24 256 2 218 1.05e-15 80.1
Msa1355340 MtrunA17_Chr7g0273261 27.660 235 156 6 255 486 10 233 1.46e-15 76.6
Msa1355340 MtrunA17_Chr3g0146061 29.940 167 114 3 97 261 58 223 2.75e-15 79.0
Msa1355340 MtrunA17_Chr5g0419321 28.324 173 121 3 86 256 75 246 9.62e-15 77.0
Msa1355340 MtrunA17_Chr1g0186831 23.512 336 193 10 142 432 133 449 3.52e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1355340 AT1G34580.1 59.921 504 197 3 1 501 1 502 0.0 628
Msa1355340 AT1G34580.2 60.619 452 175 2 53 501 1 452 0.0 574
Msa1355340 AT1G11260.1 54.490 490 215 6 20 505 17 502 0.0 538
Msa1355340 AT5G26340.1 49.414 512 248 7 1 507 1 506 0.0 521
Msa1355340 AT3G19930.1 52.079 505 235 5 1 503 1 500 0.0 520
Msa1355340 AT3G19930.2 52.079 505 235 5 1 503 1 500 0.0 520
Msa1355340 AT3G19940.1 52.599 481 224 4 22 500 21 499 0.0 518
Msa1355340 AT4G21480.1 53.086 486 224 4 20 503 17 500 1.53e-179 514
Msa1355340 AT4G02050.2 48.627 510 256 5 1 508 1 506 8.40e-179 512
Msa1355340 AT4G02050.1 48.627 510 256 5 1 508 1 506 8.40e-179 512
Msa1355340 AT1G50310.1 52.490 482 224 5 22 500 21 500 3.78e-177 508
Msa1355340 AT5G23270.1 51.860 484 227 4 20 499 18 499 6.07e-174 500
Msa1355340 AT5G61520.1 46.653 493 252 5 19 504 17 505 3.49e-162 470
Msa1355340 AT1G77210.2 46.548 507 264 7 1 504 1 503 3.42e-160 464
Msa1355340 AT1G77210.1 46.548 507 264 7 1 504 1 503 3.42e-160 464
Msa1355340 AT5G26250.1 46.122 490 258 5 17 504 13 498 5.43e-158 459
Msa1355340 AT3G05960.1 46.951 492 255 5 20 509 15 502 1.21e-157 458
Msa1355340 AT5G61520.2 46.087 460 237 5 52 504 2 457 1.07e-146 429
Msa1355340 AT1G07340.1 44.948 485 258 6 21 501 18 497 2.39e-142 419
Msa1355340 AT1G50310.2 51.576 349 165 4 154 500 11 357 3.05e-123 365
Msa1355340 AT1G77210.3 43.909 353 192 6 154 504 6 354 3.48e-106 321
Msa1355340 AT2G16120.1 30.309 485 295 10 30 493 30 492 7.49e-55 192
Msa1355340 AT3G18830.1 29.032 527 328 11 7 510 16 519 1.86e-54 192
Msa1355340 AT2G16130.1 29.485 485 299 11 30 493 30 492 1.35e-52 186
Msa1355340 AT2G18480.1 29.536 474 285 11 40 490 36 483 1.08e-51 184
Msa1355340 AT4G36670.1 29.541 501 298 14 30 505 21 491 3.77e-49 176
Msa1355340 AT5G17010.1 29.747 474 296 10 27 486 48 498 2.07e-45 166
Msa1355340 AT5G17010.3 29.747 474 296 10 27 486 48 498 2.07e-45 166
Msa1355340 AT5G17010.4 29.747 474 296 10 27 486 48 498 2.07e-45 166
Msa1355340 AT5G59250.1 29.424 486 293 13 25 488 97 554 4.81e-43 161
Msa1355340 AT2G48020.2 28.117 409 276 6 84 489 67 460 2.79e-42 157
Msa1355340 AT2G48020.1 28.117 409 276 6 84 489 67 460 2.79e-42 157
Msa1355340 AT1G75220.1 27.764 407 283 4 85 489 88 485 1.32e-41 155
Msa1355340 AT2G20780.1 26.004 473 314 12 23 486 51 496 7.44e-41 154
Msa1355340 AT2G20780.2 26.420 405 282 8 90 486 42 438 2.87e-40 152
Msa1355340 AT1G08900.5 27.654 405 279 5 85 488 23 414 7.70e-40 149
Msa1355340 AT1G08900.3 27.654 405 279 5 85 488 57 448 1.75e-39 149
Msa1355340 AT1G08900.1 27.654 405 279 5 85 488 65 456 2.16e-39 149
Msa1355340 AT1G08900.2 27.654 405 279 5 85 488 65 456 2.16e-39 149
Msa1355340 AT1G19450.1 27.340 406 288 2 85 490 89 487 5.65e-38 145
Msa1355340 AT1G08930.1 24.528 477 313 7 21 489 53 490 9.03e-38 145
Msa1355340 AT1G08930.2 24.528 477 313 7 21 489 53 490 9.03e-38 145
Msa1355340 AT3G05400.1 27.475 404 277 6 85 486 66 455 1.07e-37 144
Msa1355340 AT1G54730.2 27.115 461 300 9 32 489 38 465 1.38e-37 144
Msa1355340 AT3G03090.1 28.602 472 290 13 34 486 55 498 1.42e-37 145
Msa1355340 AT5G16150.2 26.230 488 313 11 9 486 88 538 2.94e-37 144
Msa1355340 AT5G16150.1 26.230 488 313 11 9 486 88 538 2.94e-37 144
Msa1355340 AT5G16150.3 26.230 488 313 11 9 486 88 538 2.94e-37 144
Msa1355340 AT5G27350.1 25.214 468 315 7 21 486 26 460 1.71e-36 141
Msa1355340 AT1G08890.1 24.576 472 325 6 21 492 22 462 2.89e-36 140
Msa1355340 AT1G30220.1 31.054 351 212 8 33 377 35 361 4.14e-36 142
Msa1355340 AT3G05160.1 25.527 474 306 7 21 486 16 450 7.16e-36 139
Msa1355340 AT3G05155.1 25.799 407 278 10 85 486 67 454 1.48e-35 138
Msa1355340 AT3G05160.3 26.716 408 271 5 87 486 14 401 1.57e-35 137
Msa1355340 AT3G05160.2 26.716 408 271 5 87 486 14 401 1.57e-35 137
Msa1355340 AT3G05165.3 24.893 466 319 6 21 486 25 459 4.89e-35 137
Msa1355340 AT3G05165.2 24.893 466 319 6 21 486 25 459 4.89e-35 137
Msa1355340 AT3G05165.1 24.893 466 319 6 21 486 25 459 4.89e-35 137
Msa1355340 AT1G08900.4 27.596 366 251 5 85 449 65 417 7.91e-35 135
Msa1355340 AT3G05400.2 27.160 405 257 7 85 486 66 435 1.17e-34 135
Msa1355340 AT2G43330.1 26.415 477 313 9 30 495 35 484 3.67e-34 135
Msa1355340 AT4G04760.3 26.521 411 283 7 85 490 12 408 2.13e-33 131
Msa1355340 AT1G54730.5 26.362 459 285 8 32 489 38 444 2.17e-33 132
Msa1355340 AT1G54730.3 26.683 416 270 8 32 445 38 420 3.67e-33 131
Msa1355340 AT4G04760.1 26.521 411 283 7 85 490 71 467 5.03e-33 131
Msa1355340 AT4G04750.1 27.427 412 273 8 85 488 76 469 7.00e-33 131
Msa1355340 AT4G04750.2 27.427 412 273 8 85 488 76 469 7.00e-33 131
Msa1355340 AT4G04750.3 27.427 412 273 8 85 488 120 513 1.75e-32 130
Msa1355340 AT5G27360.1 23.830 470 319 8 21 486 30 464 3.32e-32 129
Msa1355340 AT5G18840.1 24.105 419 287 6 85 493 84 481 5.38e-32 129
Msa1355340 AT5G27360.3 23.830 470 319 8 21 486 78 512 6.92e-32 129
Msa1355340 AT3G05165.6 24.324 444 305 6 21 464 25 437 2.11e-31 127
Msa1355340 AT1G79820.2 26.030 461 303 10 31 486 59 486 2.21e-31 127
Msa1355340 AT1G79820.1 26.030 461 303 10 31 486 59 486 2.21e-31 127
Msa1355340 AT3G05150.1 26.914 405 279 7 85 486 75 465 5.62e-31 125
Msa1355340 AT3G05150.3 26.914 405 279 7 85 486 75 465 5.62e-31 125
Msa1355340 AT3G05150.2 26.914 405 279 7 85 486 75 465 6.83e-31 125
Msa1355340 AT3G05165.4 24.939 413 271 6 21 429 25 402 9.76e-31 125
Msa1355340 AT3G05165.5 24.939 413 271 6 21 429 25 402 9.76e-31 125
Msa1355340 AT4G16480.2 27.034 381 252 6 1 372 2 365 1.93e-30 125
Msa1355340 AT4G16480.3 27.034 381 252 6 1 372 2 365 1.93e-30 125
Msa1355340 AT4G16480.1 27.034 381 252 6 1 372 2 365 1.93e-30 125
Msa1355340 AT4G04760.2 25.428 409 287 7 85 490 71 464 2.03e-30 124
Msa1355340 AT1G67300.2 28.125 352 222 8 99 439 107 438 9.36e-30 122
Msa1355340 AT1G67300.1 28.409 352 220 9 99 439 107 437 9.63e-30 122
Msa1355340 AT1G67300.3 28.409 352 220 9 99 439 107 437 9.63e-30 122
Msa1355340 AT5G27360.2 25.210 357 251 6 132 486 18 360 1.76e-29 119
Msa1355340 AT5G27360.5 25.210 357 251 6 132 486 18 360 1.76e-29 119
Msa1355340 AT1G67300.6 28.205 351 220 9 99 438 107 436 1.97e-29 120
Msa1355340 AT1G67300.7 28.205 351 220 9 99 438 107 436 1.97e-29 120
Msa1355340 AT1G54730.4 25.845 414 255 7 32 445 38 399 4.82e-29 119
Msa1355340 AT2G48020.4 27.562 283 196 3 85 366 68 342 3.33e-28 116
Msa1355340 AT1G67300.4 27.405 343 219 8 99 431 107 429 5.72e-28 116
Msa1355340 AT1G67300.5 27.405 343 219 8 99 431 107 429 5.72e-28 116
Msa1355340 AT1G54730.9 26.289 388 251 8 32 417 38 392 1.88e-27 114
Msa1355340 AT1G54730.7 26.289 388 251 8 32 417 38 392 1.88e-27 114
Msa1355340 AT3G20460.1 25.679 405 285 6 84 486 92 482 4.75e-27 114
Msa1355340 AT1G05030.2 26.150 413 283 10 81 486 64 461 7.80e-27 113
Msa1355340 AT2G48020.3 27.037 270 189 2 85 354 68 329 1.16e-26 111
Msa1355340 AT1G05030.1 26.407 462 300 14 32 486 85 513 1.45e-26 113
Msa1355340 AT1G79820.4 25.490 408 271 8 31 436 59 435 2.67e-26 112
Msa1355340 AT2G35740.1 25.634 355 236 7 26 370 26 362 1.13e-24 108
Msa1355340 AT5G17010.2 26.695 472 239 14 34 486 52 435 1.91e-24 106
Msa1355340 AT3G05155.2 25.735 272 187 5 85 354 67 325 2.72e-24 103
Msa1355340 AT1G54730.11 26.006 323 212 5 32 354 38 333 5.23e-24 103
Msa1355340 AT1G54730.8 25.826 333 214 5 85 417 72 371 1.69e-23 102
Msa1355340 AT1G54730.10 26.174 298 196 4 32 329 38 311 2.19e-23 101
Msa1355340 AT1G54730.6 26.174 298 196 4 32 329 38 311 2.19e-23 101
Msa1355340 AT5G27360.4 21.728 405 282 6 21 423 30 401 2.44e-22 100
Msa1355340 AT1G08920.1 23.775 408 287 8 85 486 72 461 6.31e-22 99.0
Msa1355340 AT1G08920.2 22.871 411 294 8 85 486 72 468 1.77e-21 97.8
Msa1355340 AT3G51490.2 26.877 253 163 7 25 274 3 236 8.37e-20 93.6
Msa1355340 AT3G51490.2 25.342 292 182 8 224 504 462 728 4.93e-12 68.9
Msa1355340 AT3G51490.1 26.877 253 163 7 25 274 3 236 8.51e-20 93.6
Msa1355340 AT1G79820.3 23.094 459 271 9 31 486 59 438 8.89e-20 92.4
Msa1355340 AT1G08920.3 24.217 351 242 8 85 429 72 404 5.75e-19 89.7
Msa1355340 AT3G51490.3 29.651 172 118 3 105 274 16 186 7.48e-19 90.5
Msa1355340 AT3G51490.3 25.342 292 182 8 224 504 412 678 4.77e-12 68.9
Msa1355340 AT1G20840.2 29.384 211 139 4 78 279 30 239 2.94e-17 85.5
Msa1355340 AT1G20840.1 29.384 211 139 4 78 279 30 239 2.94e-17 85.5
Msa1355340 AT4G35300.9 34.416 154 98 3 110 261 71 223 1.53e-16 83.2
Msa1355340 AT4G35300.2 34.416 154 98 3 110 261 71 223 1.53e-16 83.2
Msa1355340 AT4G35300.3 34.416 154 98 3 110 261 71 223 1.53e-16 83.2
Msa1355340 AT4G35300.4 34.416 154 98 3 110 261 71 223 1.67e-16 83.2
Msa1355340 AT4G35300.8 34.416 154 98 3 110 261 71 223 1.67e-16 83.2
Msa1355340 AT4G35300.6 34.416 154 98 3 110 261 71 223 1.67e-16 83.2
Msa1355340 AT4G35300.11 34.416 154 98 3 110 261 71 223 1.67e-16 83.2
Msa1355340 AT4G35300.1 34.416 154 98 3 110 261 71 223 1.67e-16 83.2
Msa1355340 AT4G35300.10 34.416 154 98 3 110 261 71 223 1.67e-16 83.2
Msa1355340 AT4G35300.7 34.416 154 98 3 110 261 71 223 1.67e-16 83.2
Msa1355340 AT1G79820.5 22.652 362 215 6 128 486 77 376 2.48e-16 81.3

Find 129 sgRNAs with CRISPR-Local

Find 408 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATATTCCCATGCTCATTT+TGG 0.112731 tig0014626:+52057 Msa1355340:CDS
GCATCCGGTGGCCTTCTTTA+TGG 0.178089 tig0014626:+51647 Msa1355340:CDS
GGATATGATCTCGGAGTTTC+AGG 0.179223 tig0014626:+51668 Msa1355340:CDS
CGAAGATTCTTGTTCATATC+TGG 0.184662 tig0014626:+57096 Msa1355340:CDS
CTCTTTCATTCTGTGGGTTT+TGG 0.193092 tig0014626:+56982 Msa1355340:CDS
CACAGGCTTTCAATTCTTCT+TGG 0.217468 tig0014626:+56570 Msa1355340:CDS
ATTGCCGGTGGCGCCATTAA+TGG 0.248675 tig0014626:+52025 Msa1355340:CDS
TAGAGTCAATGTACACTATA+TGG 0.252642 tig0014626:+57707 Msa1355340:CDS
GTCGTGTTCTTCTTGGGTTT+GGG 0.272060 tig0014626:+52080 Msa1355340:CDS
TTGAAAGTGCCTCGCCATTT+TGG 0.273639 tig0014626:-56547 Msa1355340:intergenic
AAAGAGGTTAGGTGAATAAA+AGG 0.293694 tig0014626:-56965 Msa1355340:intergenic
TTTCAATTCTTCTTGGGAAT+TGG 0.301751 tig0014626:+56577 Msa1355340:CDS
GGTCGTGTTCTTCTTGGGTT+TGG 0.302614 tig0014626:+52079 Msa1355340:CDS
CGGAGAAACGTCATCATAAT+AGG 0.311206 tig0014626:+51989 Msa1355340:CDS
GAAGCTTTACGCAAAATTAG+AGG 0.325354 tig0014626:+56769 Msa1355340:CDS
TATGGGGCAGACACTGGTTT+TGG 0.332168 tig0014626:+57725 Msa1355340:CDS
TGTTTGTACACTGCTGGTTT+TGG 0.339024 tig0014626:+57445 Msa1355340:CDS
CTGAAACTGCTCCACCAAAA+TGG 0.345148 tig0014626:+56533 Msa1355340:CDS
TGTTATGCCACATGAAGTTC+GGG 0.358268 tig0014626:+57602 Msa1355340:CDS
GGCGGTGCTCTCTTCATTGC+CGG 0.366092 tig0014626:+52010 Msa1355340:CDS
CCAATATTGATGGCAGTTAC+CGG 0.370527 tig0014626:-51581 Msa1355340:intergenic
TTGTCTAACCTTATCTCTGC+TGG 0.375862 tig0014626:+57054 Msa1355340:CDS
ACAGGCTTTCAATTCTTCTT+GGG 0.389681 tig0014626:+56571 Msa1355340:CDS
TAACTTGCCACCAATATTGA+TGG 0.391445 tig0014626:-51591 Msa1355340:intergenic
CCGGTAACTGCCATCAATAT+TGG 0.394236 tig0014626:+51581 Msa1355340:CDS
ATGTTATGCCACATGAAGTT+CGG 0.398150 tig0014626:+57601 Msa1355340:CDS
AGAGTCAATGTACACTATAT+GGG 0.398792 tig0014626:+57708 Msa1355340:CDS
GCTGGTATTGTTGATCGAAT+TGG 0.400611 tig0014626:+57072 Msa1355340:CDS
TTACTTTCCGCCATTATACT+TGG 0.403100 tig0014626:+57018 Msa1355340:CDS
AGCAAAGTCACAGCAGCTTA+TGG 0.403773 tig0014626:+51965 Msa1355340:CDS
ATTGTGCTGGCAGTGGTGAC+TGG 0.410858 tig0014626:+57364 Msa1355340:CDS
CTTTCCAGACATTCTGAGAA+AGG 0.411945 tig0014626:+51838 Msa1355340:CDS
GGAATTGGTGTGGTTGCCGC+TGG 0.414036 tig0014626:+56592 Msa1355340:CDS
AATTATGATGCTTGTCTGCT+TGG 0.418047 tig0014626:+57122 Msa1355340:CDS
AAAGGAATTCCTTTGGTCTC+AGG 0.421329 tig0014626:-57685 Msa1355340:intergenic
ACCTAACCTCTTTCATTCTG+TGG 0.423634 tig0014626:+56975 Msa1355340:CDS
GCTGCCTTTCTCAGAATGTC+TGG 0.426265 tig0014626:-51842 Msa1355340:intergenic
ACGTCTTCTCTTTATCTAGC+TGG 0.428341 tig0014626:+51920 Msa1355340:CDS
TGACTCTAAAGGAATTCCTT+TGG 0.429814 tig0014626:-57692 Msa1355340:intergenic
GCAGTGGTGACTGGTGTTGA+TGG 0.430718 tig0014626:+57373 Msa1355340:CDS
GTTCTTCTTGGGTTTGGGGT+TGG 0.439483 tig0014626:+52085 Msa1355340:CDS
CTATTGTGTTTGTACACTGC+TGG 0.441319 tig0014626:+57439 Msa1355340:CDS
ACCTGCATAGTTGCCGCATC+CGG 0.445921 tig0014626:+51632 Msa1355340:CDS
GAAGATTCTTGTTCATATCT+GGG 0.446102 tig0014626:+57097 Msa1355340:CDS
CCTAACCTCTTTCATTCTGT+GGG 0.449489 tig0014626:+56976 Msa1355340:CDS
TGTTGATCCCTGTAAGTTGT+TGG 0.454591 tig0014626:-56936 Msa1355340:intergenic
TACAACTATTGCATTGCCCT+TGG 0.460464 tig0014626:-57410 Msa1355340:intergenic
CATTCGGTGTATCGGTTATG+AGG 0.460517 tig0014626:-56711 Msa1355340:intergenic
CCTGCAGTTGTGATGACAAT+CGG 0.462192 tig0014626:+56682 Msa1355340:CDS
ACTAACGGATCCAAGTATAA+TGG 0.467609 tig0014626:-57028 Msa1355340:intergenic
CTTCTTTATGGATATGATCT+CGG 0.469916 tig0014626:+51659 Msa1355340:CDS
ACCGGATGCGGCAACTATGC+AGG 0.470832 tig0014626:-51633 Msa1355340:intergenic
GGGCAATGCAATAGTTGTAT+TGG 0.476626 tig0014626:+57414 Msa1355340:CDS
GGTCGTGGGGCCCTCTAACA+TGG 0.478479 tig0014626:+57470 Msa1355340:CDS
TCCCCATGTGTGCTTGGCCG+TGG 0.481299 tig0014626:-56629 Msa1355340:intergenic
TCGTGTTCTTCTTGGGTTTG+GGG 0.485017 tig0014626:+52081 Msa1355340:CDS
AGTTAGAAGAACTTATTAAG+TGG 0.486190 tig0014626:+56815 Msa1355340:CDS
TACCAAGCCATTCGGTGTAT+CGG 0.488735 tig0014626:-56719 Msa1355340:intergenic
CCACGTTCTACCAAGCCATT+CGG 0.490594 tig0014626:-56727 Msa1355340:intergenic
ATAAAGAAGGCCACCGGATG+CGG 0.490881 tig0014626:-51645 Msa1355340:intergenic
CTTGGAATAAGCCATGTTAG+AGG 0.494856 tig0014626:-57481 Msa1355340:intergenic
TGGCGCCATTAATGGTGGTT+CGG 0.498015 tig0014626:+52033 Msa1355340:CDS
TGGGGATGGAGACTCTCTCT+TGG 0.498033 tig0014626:+56646 Msa1355340:CDS
ACCACCATTAATGGCGCCAC+CGG 0.500623 tig0014626:-52029 Msa1355340:intergenic
TCTCCATCCCCATGTGTGCT+TGG 0.503665 tig0014626:-56635 Msa1355340:intergenic
ACGCCACGGCCAAGCACACA+TGG 0.503779 tig0014626:+56626 Msa1355340:CDS
CAACAATACCAGCAGAGATA+AGG 0.505326 tig0014626:-57062 None:intergenic
TTAATAAGTTCTTCTAACTC+AGG 0.509188 tig0014626:-56811 None:intergenic
TGTGACTTTGCTAGCTGCAA+TGG 0.517535 tig0014626:-51954 None:intergenic
CCCACAGAATGAAAGAGGTT+AGG 0.519572 tig0014626:-56976 None:intergenic
ATACATATTCACTTCGGCAC+TGG 0.521684 tig0014626:-51864 None:intergenic
AAACAAGGTTTGAAAATGAC+TGG 0.521888 tig0014626:+51533 None:intergenic
CGAGATCATATCCATAAAGA+AGG 0.530176 tig0014626:-51658 Msa1355340:intergenic
GATTGCTGTGTCCATTGTGC+TGG 0.531494 tig0014626:+57351 Msa1355340:intron
CCGATTGTCATCACAACTGC+AGG 0.535658 tig0014626:-56682 Msa1355340:intergenic
CAAAACCCACAGAATGAAAG+AGG 0.536208 tig0014626:-56981 Msa1355340:intergenic
TGCATAGTTGCCGCATCCGG+TGG 0.541548 tig0014626:+51635 Msa1355340:CDS
CGGTGTATCGGTTATGAGGA+AGG 0.542808 tig0014626:-56707 Msa1355340:intergenic
TTGGTGGAGCAGTTTCAGAT+AGG 0.542966 tig0014626:-56528 Msa1355340:intergenic
CGGCCAAGCACACATGGGGA+TGG 0.549134 tig0014626:+56632 Msa1355340:CDS
TTCTTCTTGCCTGAGACCAA+AGG 0.551463 tig0014626:+57676 Msa1355340:CDS
AAGGGCATATCGACCTCACT+TGG 0.552994 tig0014626:+56888 Msa1355340:CDS
AACCGATACACCGAATGGCT+TGG 0.555658 tig0014626:+56717 Msa1355340:CDS
TGTGTCCATTGTGCTGGCAG+TGG 0.558232 tig0014626:+57357 Msa1355340:CDS
ACTCTCTCTTGGACTTGCAG+TGG 0.559257 tig0014626:+56657 Msa1355340:CDS
ATTCTTCTTGGGAATTGGTG+TGG 0.559263 tig0014626:+56582 Msa1355340:CDS
AAGGTTTGAAAATGACTGGT+GGG 0.561674 tig0014626:+51537 None:intergenic
ACACTATATGGGGCAGACAC+TGG 0.566749 tig0014626:+57719 Msa1355340:CDS
AAGATTCTTGTTCATATCTG+GGG 0.569807 tig0014626:+57098 Msa1355340:CDS
TTTACCGGGAAAATCTCACT+TGG 0.569808 tig0014626:-57499 Msa1355340:intergenic
AACACGACCCAAAATGAGCA+TGG 0.574342 tig0014626:-52065 Msa1355340:intergenic
GCCGGTGGCGCCATTAATGG+TGG 0.577000 tig0014626:+52028 Msa1355340:CDS
ATAGTGTACATTGACTCTAA+AGG 0.580194 tig0014626:-57703 Msa1355340:intergenic
CGGTATGTTAAAGGACAAGA+TGG 0.582041 tig0014626:+57751 Msa1355340:CDS
CGCCACGGCCAAGCACACAT+GGG 0.589411 tig0014626:+56627 Msa1355340:CDS
GTAACTGCCATCAATATTGG+TGG 0.596062 tig0014626:+51584 Msa1355340:CDS
TTGGAATAAGCCATGTTAGA+GGG 0.596308 tig0014626:-57480 Msa1355340:intergenic
AACAGCTATACTTTGTCCTG+TGG 0.598060 tig0014626:-57530 Msa1355340:intergenic
ATATCGACCTCACTTGGTGA+TGG 0.599901 tig0014626:+56894 Msa1355340:CDS
TAACTCAGGTTCAATATCAA+CGG 0.603300 tig0014626:-56797 Msa1355340:intergenic
GCGAATGCCATCACCAAGTG+AGG 0.611968 tig0014626:-56901 Msa1355340:intergenic
AGATTCTTGTTCATATCTGG+GGG 0.616218 tig0014626:+57099 Msa1355340:CDS
CAAAGGCCCCGAACTTCATG+TGG 0.617099 tig0014626:-57609 Msa1355340:intergenic
GGTGCTCTCTTCATTGCCGG+TGG 0.617229 tig0014626:+52013 Msa1355340:CDS
AAGTCACAGCAGCTTATGGT+CGG 0.618865 tig0014626:+51969 Msa1355340:CDS
GTTACCGGTGTACTATCCAC+TGG 0.619343 tig0014626:-51566 Msa1355340:intergenic
GGTACAAAAGATATATCCAA+GGG 0.622196 tig0014626:+57394 Msa1355340:CDS
GCCACGGCCAAGCACACATG+GGG 0.623588 tig0014626:+56628 Msa1355340:CDS
AGGTTTGAAAATGACTGGTG+GGG 0.623970 tig0014626:+51538 None:intergenic
ACACGACCCAAAATGAGCAT+GGG 0.624328 tig0014626:-52064 None:intergenic
AAGGTTAGACAAAAGACTAA+CGG 0.625696 tig0014626:-57043 None:intergenic
CAAGGTTTGAAAATGACTGG+TGG 0.628472 tig0014626:+51536 None:intergenic
TGGTACAAAAGATATATCCA+AGG 0.629739 tig0014626:+57393 Msa1355340:CDS
TGGCGAGGCACTTTCAACAC+AGG 0.630142 tig0014626:+56553 Msa1355340:CDS
CTCATAACCGATACACCGAA+TGG 0.631397 tig0014626:+56712 Msa1355340:CDS
CACACAATACATATTCACTT+CGG 0.633517 tig0014626:-51870 Msa1355340:intergenic
TTCAGGAGGTGTTACAACGA+TGG 0.634531 tig0014626:+51796 Msa1355340:intron
GAGTCAATGTACACTATATG+GGG 0.639275 tig0014626:+57709 Msa1355340:CDS
GGCGTAGTTTATGCAGCCAG+CGG 0.640758 tig0014626:-56608 Msa1355340:intergenic
ATATCCATAAAGAAGGCCAC+CGG 0.643249 tig0014626:-51651 Msa1355340:intergenic
CCGAATGGCTTGGTAGAACG+TGG 0.657766 tig0014626:+56727 Msa1355340:CDS
AACGGATCCAAGTATAATGG+CGG 0.663801 tig0014626:-57025 Msa1355340:intergenic
AGTCACCACTGCCAGCACAA+TGG 0.668344 tig0014626:-57362 Msa1355340:intergenic
TTTACCAGTGGATAGTACAC+CGG 0.670128 tig0014626:+51562 Msa1355340:CDS
TGGCTGCATAAACTACGCCA+CGG 0.682362 tig0014626:+56612 Msa1355340:CDS
ACTGCTCCACCAAAATGGCG+AGG 0.692345 tig0014626:+56538 Msa1355340:CDS
GCAGTTTCAGATAGGTACAA+CGG 0.701469 tig0014626:-56520 Msa1355340:intergenic
AGAAACGTCATCATAATAGG+CGG 0.718138 tig0014626:+51992 Msa1355340:CDS
GTTATGCCACATGAAGTTCG+GGG 0.752405 tig0014626:+57603 Msa1355340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAACAAAATTAATTGTTA+AGG + tig0014626:52660-52679 Msa1355340:intron 10.0%
!! ATAAAAAACTATTATATCAA+TGG - tig0014626:52872-52891 Msa1355340:intergenic 10.0%
!!! TGATATAATAGTTTTTTATT+TGG + tig0014626:52873-52892 Msa1355340:intron 10.0%
!!! CACAATTTTTTTATATATAA+TGG - tig0014626:53543-53562 Msa1355340:intergenic 10.0%
!! TTAAAAAATTTAAGAGTTTA+AGG + tig0014626:54463-54482 Msa1355340:intron 10.0%
!!! TAAACAAAATTTATTTTAGT+AGG + tig0014626:54491-54510 Msa1355340:intron 10.0%
!!! AAACAAAATTTATTTTAGTA+GGG + tig0014626:54492-54511 Msa1355340:intron 10.0%
!!! ATAAGTAAATTTTTTTTTGT+AGG + tig0014626:54524-54543 Msa1355340:intron 10.0%
!!! TAAGTAAATTTTTTTTTGTA+GGG + tig0014626:54525-54544 Msa1355340:intron 10.0%
!! ATAAGAATTAATAAAAATCA+AGG - tig0014626:56274-56293 Msa1355340:intergenic 10.0%
!! TAAAATGTCATAATATAATA+AGG - tig0014626:56482-56501 Msa1355340:intergenic 10.0%
!! TGAAATTTAATAAAGTGAAA+AGG - tig0014626:51780-51799 Msa1355340:intergenic 15.0%
!!! TTTTCACTTTATTAAATTTC+AGG + tig0014626:51779-51798 Msa1355340:intron 15.0%
!! TTGAAAAAATAAAGTTACAA+TGG + tig0014626:52698-52717 Msa1355340:intron 15.0%
!! TGAAAAAATAAAGTTACAAT+GGG + tig0014626:52699-52718 Msa1355340:intron 15.0%
!!! ATAATAGTTTTTTATTTGGA+CGG + tig0014626:52877-52896 Msa1355340:intron 15.0%
!!! TGTTATTAAATAATTTTCGT+GGG - tig0014626:52968-52987 Msa1355340:intergenic 15.0%
!!! TTGTTATTAAATAATTTTCG+TGG - tig0014626:52969-52988 Msa1355340:intergenic 15.0%
!! AAAATCAAAACAGAAAAAAA+GGG - tig0014626:53510-53529 Msa1355340:intergenic 15.0%
!!! TTTTTTCTTTTTTTCTTAAC+CGG + tig0014626:53767-53786 Msa1355340:intron 15.0%
!!! TTGTTTTTTCATAATTCATA+GGG - tig0014626:53971-53990 Msa1355340:intergenic 15.0%
!!! ATTGTTTTTTCATAATTCAT+AGG - tig0014626:53972-53991 Msa1355340:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+AGG - tig0014626:54554-54573 Msa1355340:intergenic 15.0%
!! AAGCATAAATTAAACAAATT+TGG - tig0014626:54213-54232 Msa1355340:intergenic 15.0%
!!! AATTTTTGCGATATTTTTTT+CGG - tig0014626:54297-54316 Msa1355340:intergenic 15.0%
!! AGATATAAGTAACAAAAATA+TGG - tig0014626:54332-54351 Msa1355340:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+AGG + tig0014626:54554-54573 Msa1355340:intron 15.0%
!! ATAATTAACGCTATATATTA+TGG + tig0014626:54617-54636 Msa1355340:intron 15.0%
!!! TTTAATATTGACATTTTCAA+AGG - tig0014626:54686-54705 Msa1355340:intergenic 15.0%
!! TAATTCTAACATCTTTATTA+TGG + tig0014626:55850-55869 Msa1355340:intron 15.0%
!!! AAAAAAAATCAATTTTATGC+AGG - tig0014626:55931-55950 Msa1355340:intergenic 15.0%
!! TAAATTCTACTATTATGATA+AGG + tig0014626:56103-56122 Msa1355340:intron 15.0%
!!! TTTTTTAGTAGTATGTATTT+AGG - tig0014626:56314-56333 Msa1355340:intergenic 15.0%
!!! ATATTATGACATTTTACAAT+TGG + tig0014626:56486-56505 Msa1355340:intron 15.0%
!!! CTTCAATTTGTTTTTTGTTT+TGG + tig0014626:52161-52180 Msa1355340:intron 20.0%
!!! TTTTAAACAACAGTATGATA+TGG + tig0014626:52390-52409 Msa1355340:intron 20.0%
!!! ATTAATTGTTAAGGAGTATA+AGG + tig0014626:52669-52688 Msa1355340:intron 20.0%
!!! GTTATTAAATAATTTTCGTG+GGG - tig0014626:52967-52986 Msa1355340:intergenic 20.0%
!!! CTTGTTAGTTTTATTAAAGA+GGG - tig0014626:53399-53418 Msa1355340:intergenic 20.0%
!! CAAAATCAAAACAGAAAAAA+AGG - tig0014626:53511-53530 Msa1355340:intergenic 20.0%
!!! CTTTTTTTCTGTTTTGATTT+TGG + tig0014626:53509-53528 Msa1355340:intron 20.0%
!! AGTCAAAATAAGAGAAATAA+AGG + tig0014626:54038-54057 Msa1355340:intron 20.0%
!! AATTACCCTAATATATACTA+CGG - tig0014626:54075-54094 Msa1355340:intergenic 20.0%
!!! TATTAGGGTAATTATGTTTT+TGG + tig0014626:54082-54101 Msa1355340:intron 20.0%
!!! GTTTTTCAACAATTTTTTAC+AGG + tig0014626:54243-54262 Msa1355340:intron 20.0%
!!! TATAGCGTTAATTATGTTTT+TGG - tig0014626:54612-54631 Msa1355340:intergenic 20.0%
!!! GGAGTTTTTTTTTTTTTTGA+GGG - tig0014626:54773-54792 Msa1355340:intergenic 20.0%
!!! AGGAGTTTTTTTTTTTTTTG+AGG - tig0014626:54774-54793 Msa1355340:intergenic 20.0%
!!! AAAATGTCTAGATTTGTTAA+AGG - tig0014626:54794-54813 Msa1355340:intergenic 20.0%
!!! ATATGTGTTATTTCTTTCAT+GGG - tig0014626:54981-55000 Msa1355340:intergenic 20.0%
!!! AATATGTGTTATTTCTTTCA+TGG - tig0014626:54982-55001 Msa1355340:intergenic 20.0%
!! AATAAGACATCAATATGTAT+GGG - tig0014626:55258-55277 Msa1355340:intergenic 20.0%
!! TATGAGAATTCATTATGTAT+GGG - tig0014626:55477-55496 Msa1355340:intergenic 20.0%
!! TTCATTCTACTATTATGATA+AGG + tig0014626:55951-55970 Msa1355340:intron 20.0%
!! TGATTCTAACATCTTTATTA+TGG + tig0014626:56001-56020 Msa1355340:intron 20.0%
!!! GAAAAAAAACAATTTTATGC+AGG - tig0014626:56082-56101 Msa1355340:intergenic 20.0%
!!! CTTTTTAAAATGGTTTTGAA+GGG - tig0014626:56871-56890 Msa1355340:intergenic 20.0%
!!! CTTCAAAACCATTTTAAAAA+GGG + tig0014626:56870-56889 Msa1355340:CDS 20.0%
!!! AATATATTTTTGTCCTATGA+AGG + tig0014626:57180-57199 Msa1355340:intron 20.0%
!! TTAAACTAAATATCCTTCAT+AGG - tig0014626:57196-57215 Msa1355340:intergenic 20.0%
!!! CTATTTTAATTAGTAACAAG+TGG - tig0014626:57312-57331 Msa1355340:intergenic 20.0%
! TAGATAGACTGGAAAATTTA+TGG - tig0014626:51717-51736 Msa1355340:intergenic 25.0%
! TTTAAACTTGATAGATAGAC+TGG - tig0014626:51728-51747 Msa1355340:intergenic 25.0%
! TCACTTTATTAAATTTCAGG+AGG + tig0014626:51782-51801 Msa1355340:intron 25.0%
! ATACTTCATTCTTTCACATT+TGG + tig0014626:52489-52508 Msa1355340:intron 25.0%
! AAAAGTTTCCTCTAAATGAT+TGG - tig0014626:52637-52656 Msa1355340:intergenic 25.0%
! AGAATATGTAATTCGTTACA+AGG + tig0014626:52788-52807 Msa1355340:intron 25.0%
! AATTACCAGGTAATTAATCT+TGG - tig0014626:52903-52922 Msa1355340:intergenic 25.0%
!!! AAAAAGTATCAACAATTACC+AGG - tig0014626:52916-52935 Msa1355340:intergenic 25.0%
! TAACAAAGATTGAACATGTT+TGG + tig0014626:53255-53274 Msa1355340:intron 25.0%
!!! CCTTGTTAGTTTTATTAAAG+AGG - tig0014626:53400-53419 Msa1355340:intergenic 25.0%
! CCTCTTTAATAAAACTAACA+AGG + tig0014626:53397-53416 Msa1355340:intron 25.0%
!!! TTTTCTGTTTTGATTTTGGT+TGG + tig0014626:53513-53532 Msa1355340:intron 25.0%
!!! GTTAAGTTGTTTTTAGTTGT+TGG + tig0014626:53640-53659 Msa1355340:intron 25.0%
! ATTACCCTAATATATACTAC+GGG - tig0014626:54074-54093 Msa1355340:intergenic 25.0%
!!! AGTGCAGAAATTTTTTTGTA+GGG - tig0014626:54169-54188 Msa1355340:intergenic 25.0%
! GTGTTAAGAACGTTATTAAA+AGG + tig0014626:54267-54286 Msa1355340:intron 25.0%
!! CAAGTTTAGAATACTATGAA+AGG - tig0014626:54429-54448 Msa1355340:intergenic 25.0%
! AAGTAAGGACTAAATTTACA+AGG + tig0014626:54569-54588 Msa1355340:intron 25.0%
! ATGGGATTACTATAATACAA+CGG - tig0014626:54658-54677 Msa1355340:intergenic 25.0%
!! ACATTTTCAAAGGATCTAAT+GGG - tig0014626:54676-54695 Msa1355340:intergenic 25.0%
!!! AATTCATCTTTTTTTTGTGG+TGG - tig0014626:55137-55156 Msa1355340:intergenic 25.0%
! ATGTATGGATCAATATGTAT+GGG - tig0014626:55160-55179 Msa1355340:intergenic 25.0%
! TATGTATGGATCAATATGTA+TGG - tig0014626:55161-55180 Msa1355340:intergenic 25.0%
! CAATAAGACATCAATATGTA+TGG - tig0014626:55259-55278 Msa1355340:intergenic 25.0%
! TATGGGAATTCATTATGTAT+GGG - tig0014626:55174-55193 Msa1355340:intergenic 25.0%
! TATGGGAATTCATTATGTAT+GGG - tig0014626:55174-55193 Msa1355340:intergenic 25.0%
! GTATGAGAATTCATTATGTA+TGG - tig0014626:55478-55497 Msa1355340:intergenic 25.0%
! TATGGGAATTCATTATGTAT+GGG - tig0014626:55174-55193 Msa1355340:intergenic 25.0%
! TAAACTATAGTTCTTTCTCA+TGG + tig0014626:55785-55804 Msa1355340:intron 25.0%
! AATCTACACAGACTTATAAA+TGG - tig0014626:56237-56256 Msa1355340:intergenic 25.0%
! TACTACTAAAAAAAATAGCG+AGG + tig0014626:56321-56340 Msa1355340:intron 25.0%
! ACTACTAAAAAAAATAGCGA+GGG + tig0014626:56322-56341 Msa1355340:intron 25.0%
! AGGATGATGATTGATAAAAA+CGG - tig0014626:56462-56481 Msa1355340:intergenic 25.0%
!! TGACATTTTACAATTGGAAA+AGG + tig0014626:56492-56511 Msa1355340:intron 25.0%
! TTAATAAGTTCTTCTAACTC+AGG - tig0014626:56814-56833 Msa1355340:intergenic 25.0%
! AGTTAGAAGAACTTATTAAG+TGG + tig0014626:56815-56834 Msa1355340:CDS 25.0%
!!! CCTTTTTAAAATGGTTTTGA+AGG - tig0014626:56872-56891 Msa1355340:intergenic 25.0%
!!! CCTTCAAAACCATTTTAAAA+AGG + tig0014626:56869-56888 Msa1355340:CDS 25.0%
CTTCTTTATGGATATGATCT+CGG + tig0014626:51659-51678 Msa1355340:CDS 30.0%
!!! GGAAAGAATTTTTCGAGAAA+TGG - tig0014626:51824-51843 Msa1355340:intergenic 30.0%
CACACAATACATATTCACTT+CGG - tig0014626:51873-51892 Msa1355340:intergenic 30.0%
! AAATATTCCCATGCTCATTT+TGG + tig0014626:52057-52076 Msa1355340:CDS 30.0%
! AATATTCCCATGCTCATTTT+GGG + tig0014626:52058-52077 Msa1355340:CDS 30.0%
!! ACCATCAAACTCATTTTTAG+CGG - tig0014626:52256-52275 Msa1355340:intergenic 30.0%
TCATTCTTTCACATTTGGAT+TGG + tig0014626:52494-52513 Msa1355340:intron 30.0%
CATTCTTTCACATTTGGATT+GGG + tig0014626:52495-52514 Msa1355340:intron 30.0%
AATGGAATTGTGTGATTTAG+GGG - tig0014626:52529-52548 Msa1355340:intergenic 30.0%
GAATGGAATTGTGTGATTTA+GGG - tig0014626:52530-52549 Msa1355340:intergenic 30.0%
AATCTACATCCTCTTGAAAT+CGG + tig0014626:52554-52573 Msa1355340:intron 30.0%
ATATGTAATTCGTTACAAGG+TGG + tig0014626:52791-52810 Msa1355340:intron 30.0%
TATGTAATTCGTTACAAGGT+GGG + tig0014626:52792-52811 Msa1355340:intron 30.0%
! AAATGCAATTTTCCCATCAT+GGG - tig0014626:52845-52864 Msa1355340:intergenic 30.0%
! AAAATGCAATTTTCCCATCA+TGG - tig0014626:52846-52865 Msa1355340:intergenic 30.0%
ATTGGAAAAAAGGAAAGAGA+TGG - tig0014626:53157-53176 Msa1355340:intergenic 30.0%
CTCAGCTGTAAAATCAATTA+TGG + tig0014626:53280-53299 Msa1355340:intron 30.0%
! CTTCTTGAGAATTGATTTAC+AGG - tig0014626:53353-53372 Msa1355340:intergenic 30.0%
TTGTGCTAATATAGTGATGA+TGG + tig0014626:53558-53577 Msa1355340:intron 30.0%
TGTGCTAATATAGTGATGAT+GGG + tig0014626:53559-53578 Msa1355340:intron 30.0%
AAAAGAGCAATTGTAAAACG+AGG - tig0014626:53872-53891 Msa1355340:intergenic 30.0%
TAAGTCAGAAGAAAGTGAAA+GGG - tig0014626:53944-53963 Msa1355340:intergenic 30.0%
ATAAGTCAGAAGAAAGTGAA+AGG - tig0014626:53945-53964 Msa1355340:intergenic 30.0%
ATGTTCCCGTAGTATATATT+AGG + tig0014626:54066-54085 Msa1355340:intron 30.0%
TGTTCCCGTAGTATATATTA+GGG + tig0014626:54067-54086 Msa1355340:intron 30.0%
AAGTAAGGACTAAACTTACA+AGG - tig0014626:54125-54144 Msa1355340:intergenic 30.0%
!!! GAGTGCAGAAATTTTTTTGT+AGG - tig0014626:54170-54189 Msa1355340:intergenic 30.0%
!!! TTTTGCGATATTTTTTTCGG+AGG - tig0014626:54294-54313 Msa1355340:intergenic 30.0%
TGGGATTACTATAATACAAC+GGG - tig0014626:54657-54676 Msa1355340:intergenic 30.0%
! GACATTTTCAAAGGATCTAA+TGG - tig0014626:54677-54696 Msa1355340:intergenic 30.0%
TTCCCATTTGTACAAAATAC+TGG + tig0014626:54726-54745 Msa1355340:intron 30.0%
! GTCCAGTATTTTGTACAAAT+GGG - tig0014626:54731-54750 Msa1355340:intergenic 30.0%
!!! TTTTTTTGAGGGAGAGTAAA+AGG - tig0014626:54762-54781 Msa1355340:intergenic 30.0%
!! TTTTAACTCTTCACTAACAC+CGG + tig0014626:54939-54958 Msa1355340:intron 30.0%
GACAATGCATAATATATGCA+GGG + tig0014626:55076-55095 Msa1355340:intron 30.0%
!!! GGGAATTCATCTTTTTTTTG+TGG - tig0014626:55140-55159 Msa1355340:intergenic 30.0%
GTATGGGAATTCATTATGTA+TGG - tig0014626:55175-55194 Msa1355340:intergenic 30.0%
CATCAGACATCAATATGTAT+GGG - tig0014626:55211-55230 Msa1355340:intergenic 30.0%
ACATCAGACATCAATATGTA+TGG - tig0014626:55212-55231 Msa1355340:intergenic 30.0%
GTATGGGAATTCATTATGTA+TGG - tig0014626:55175-55194 Msa1355340:intergenic 30.0%
CATCAGACATCAATATGTAT+GGG - tig0014626:55211-55230 Msa1355340:intergenic 30.0%
ACATCAGACATCAATATGTA+TGG - tig0014626:55212-55231 Msa1355340:intergenic 30.0%
GTATGGGAATTCATTATGTA+TGG - tig0014626:55175-55194 Msa1355340:intergenic 30.0%
CATCAGACATCAATATGTAT+GGG - tig0014626:55211-55230 Msa1355340:intergenic 30.0%
ACATCAGACATCAATATGTA+TGG - tig0014626:55212-55231 Msa1355340:intergenic 30.0%
GGGAATTCATTATAAATTGC+AGG - tig0014626:55599-55618 Msa1355340:intergenic 30.0%
GTATGGGAATTCATTATGTA+TGG - tig0014626:55175-55194 Msa1355340:intergenic 30.0%
CATCAGACATCAATATGTAT+GGG - tig0014626:55211-55230 Msa1355340:intergenic 30.0%
ACATCAGACATCAATATGTA+TGG - tig0014626:55212-55231 Msa1355340:intergenic 30.0%
TGATAAGGCGATATTTAAGA+AGG + tig0014626:56118-56137 Msa1355340:intron 30.0%
TTTCAATTCTTCTTGGGAAT+TGG + tig0014626:56577-56596 Msa1355340:CDS 30.0%
! AATTTTGCGTAAAGCTTCTT+TGG - tig0014626:56767-56786 Msa1355340:intergenic 30.0%
TAACTCAGGTTCAATATCAA+CGG - tig0014626:56800-56819 Msa1355340:intergenic 30.0%
!! TCGATATGCCCTTTTTAAAA+TGG - tig0014626:56881-56900 Msa1355340:intergenic 30.0%
CTGTAAGTTGTTGGAAAAAT+GGG - tig0014626:56930-56949 Msa1355340:intergenic 30.0%
! CATTTTTCCAACAACTTACA+GGG + tig0014626:56929-56948 Msa1355340:CDS 30.0%
AAAGAGGTTAGGTGAATAAA+AGG - tig0014626:56968-56987 Msa1355340:intergenic 30.0%
AAGGTTAGACAAAAGACTAA+CGG - tig0014626:57046-57065 Msa1355340:intergenic 30.0%
GAAGATTCTTGTTCATATCT+GGG + tig0014626:57097-57116 Msa1355340:CDS 30.0%
AAGATTCTTGTTCATATCTG+GGG + tig0014626:57098-57117 Msa1355340:CDS 30.0%
TGGTACAAAAGATATATCCA+AGG + tig0014626:57393-57412 Msa1355340:CDS 30.0%
GGTACAAAAGATATATCCAA+GGG + tig0014626:57394-57413 Msa1355340:CDS 30.0%
!! CTTTGTCTTCTATGCTTTTT+GGG + tig0014626:57627-57646 Msa1355340:CDS 30.0%
!! ATAGTGTACATTGACTCTAA+AGG - tig0014626:57706-57725 Msa1355340:intergenic 30.0%
TAGAGTCAATGTACACTATA+TGG + tig0014626:57707-57726 Msa1355340:CDS 30.0%
AGAGTCAATGTACACTATAT+GGG + tig0014626:57708-57727 Msa1355340:CDS 30.0%
! TAACTTGCCACCAATATTGA+TGG - tig0014626:51594-51613 Msa1355340:intergenic 35.0%
CGAGATCATATCCATAAAGA+AGG - tig0014626:51661-51680 Msa1355340:intergenic 35.0%
AGAAACGTCATCATAATAGG+CGG + tig0014626:51992-52011 Msa1355340:CDS 35.0%
! ATTTTCCGAACCACCATTAA+TGG - tig0014626:52041-52060 Msa1355340:intergenic 35.0%
ACCGCTAAAAATGAGTTTGA+TGG + tig0014626:52252-52271 Msa1355340:intron 35.0%
GAGACTTAGTTATCTGATGA+CGG - tig0014626:52333-52352 Msa1355340:intergenic 35.0%
GTCATCAGATAACTAAGTCT+CGG + tig0014626:52332-52351 Msa1355340:intron 35.0%
GATATGGCATGTTCATTCAA+AGG + tig0014626:52406-52425 Msa1355340:intron 35.0%
CGAATGGAATTGTGTGATTT+AGG - tig0014626:52531-52550 Msa1355340:intergenic 35.0%
! TTAGATGAACCGATTTCAAG+AGG - tig0014626:52566-52585 Msa1355340:intergenic 35.0%
GATCACATCCAATCATTTAG+AGG + tig0014626:52626-52645 Msa1355340:intron 35.0%
ACTATATAGCATACAAGCGA+TGG - tig0014626:52741-52760 Msa1355340:intergenic 35.0%
ATCGCTTGTATGCTATATAG+TGG + tig0014626:52740-52759 Msa1355340:intron 35.0%
TCGCTTGTATGCTATATAGT+GGG + tig0014626:52741-52760 Msa1355340:intron 35.0%
ATGTAATTCGTTACAAGGTG+GGG + tig0014626:52793-52812 Msa1355340:intron 35.0%
!!! TGGATAGTTTTTTCCCATGA+TGG + tig0014626:52829-52848 Msa1355340:intron 35.0%
!!! GGATAGTTTTTTCCCATGAT+GGG + tig0014626:52830-52849 Msa1355340:intron 35.0%
AGTATTGTGTGACCAATTTG+TGG + tig0014626:52940-52959 Msa1355340:intron 35.0%
GTATTGTGTGACCAATTTGT+GGG + tig0014626:52941-52960 Msa1355340:intron 35.0%
TTATGGATCCTAGAATCGAT+TGG + tig0014626:53297-53316 Msa1355340:intron 35.0%
TATGGATCCTAGAATCGATT+GGG + tig0014626:53298-53317 Msa1355340:intron 35.0%
!! CAAGGTGTCTCTCTATTTTA+TGG + tig0014626:53415-53434 Msa1355340:intron 35.0%
! CTCCCTTCAATTCTTTTACA+CGG + tig0014626:53454-53473 Msa1355340:intron 35.0%
CACCGTGTAAAAGAATTGAA+GGG - tig0014626:53459-53478 Msa1355340:intergenic 35.0%
!! AATATAGTGATGATGGGAAG+AGG + tig0014626:53565-53584 Msa1355340:intron 35.0%
TCTTCGTCATCAATGGATAA+AGG - tig0014626:53615-53634 Msa1355340:intergenic 35.0%
ACAATGTTCTTCGTCATCAA+TGG - tig0014626:53622-53641 Msa1355340:intergenic 35.0%
TTTAGTTGTTGGAGAGAAGA+TGG + tig0014626:53651-53670 Msa1355340:intron 35.0%
GAGCTTACATTACTATGTTC+TGG + tig0014626:53682-53701 Msa1355340:intron 35.0%
TATATACTACGGGAACATGT+TGG - tig0014626:54064-54083 Msa1355340:intergenic 35.0%
! TACAAGGTCGCAATTTTGTA+GGG - tig0014626:54585-54604 Msa1355340:intergenic 35.0%
! TTACAAGGTCGCAATTTTGT+AGG - tig0014626:54584-54603 Msa1355340:intergenic 35.0%
! TTACAAGGTCGCAATTTTGT+AGG + tig0014626:54584-54603 Msa1355340:intron 35.0%
! TACAAGGTCGCAATTTTGTA+GGG + tig0014626:54585-54604 Msa1355340:intron 35.0%
! GGTCCAGTATTTTGTACAAA+TGG - tig0014626:54732-54751 Msa1355340:intergenic 35.0%
!! TGTGTTATTTCTTTCATGGG+AGG - tig0014626:54978-54997 Msa1355340:intergenic 35.0%
GGACAATGCATAATATATGC+AGG + tig0014626:55075-55094 Msa1355340:intron 35.0%
CATAATATATGCAGGGTACA+GGG + tig0014626:55083-55102 Msa1355340:intron 35.0%
GGGAAGACATCAATATGTAT+GGG - tig0014626:55191-55210 Msa1355340:intergenic 35.0%
TGGGAAGACATCAATATGTA+TGG - tig0014626:55192-55211 Msa1355340:intergenic 35.0%
GGGAAGACATCAATATGTAT+GGG - tig0014626:55191-55210 Msa1355340:intergenic 35.0%
TGGGAAGACATCAATATGTA+TGG - tig0014626:55192-55211 Msa1355340:intergenic 35.0%
GGGAAGACATCAATATGTAT+GGG - tig0014626:55191-55210 Msa1355340:intergenic 35.0%
TGGGAAGACATCAATATGTA+TGG - tig0014626:55192-55211 Msa1355340:intergenic 35.0%
GGGAAGACATCAATATGTAT+GGG - tig0014626:55191-55210 Msa1355340:intergenic 35.0%
TGGGAAGACATCAATATGTA+TGG - tig0014626:55192-55211 Msa1355340:intergenic 35.0%
TACATGTGTACGAGTTTAAG+AGG + tig0014626:56040-56059 Msa1355340:intron 35.0%
TATAAGTCTGTGTAGATTCG+TGG + tig0014626:56239-56258 Msa1355340:intron 35.0%
ATAAGTCTGTGTAGATTCGT+GGG + tig0014626:56240-56259 Msa1355340:intron 35.0%
!! TAGCGAGGGATTTTTAGAAA+TGG + tig0014626:56336-56355 Msa1355340:intron 35.0%
ACAGGCTTTCAATTCTTCTT+GGG + tig0014626:56571-56590 Msa1355340:CDS 35.0%
GAAGCTTTACGCAAAATTAG+AGG + tig0014626:56769-56788 Msa1355340:CDS 35.0%
CCTGTAAGTTGTTGGAAAAA+TGG - tig0014626:56931-56950 Msa1355340:intergenic 35.0%
!! CCATTTTTCCAACAACTTAC+AGG + tig0014626:56928-56947 Msa1355340:CDS 35.0%
TTACTTTCCGCCATTATACT+TGG + tig0014626:57018-57037 Msa1355340:CDS 35.0%
! ACTAACGGATCCAAGTATAA+TGG - tig0014626:57031-57050 Msa1355340:intergenic 35.0%
CGAAGATTCTTGTTCATATC+TGG + tig0014626:57096-57115 Msa1355340:CDS 35.0%
AGATTCTTGTTCATATCTGG+GGG + tig0014626:57099-57118 Msa1355340:CDS 35.0%
AATTATGATGCTTGTCTGCT+TGG + tig0014626:57122-57141 Msa1355340:CDS 35.0%
TTGGAATAAGCCATGTTAGA+GGG - tig0014626:57483-57502 Msa1355340:intergenic 35.0%
! TATTCCAAGTGAGATTTTCC+CGG + tig0014626:57495-57514 Msa1355340:CDS 35.0%
!!! CTGTGGTTCTTATTTTTACC+GGG - tig0014626:57516-57535 Msa1355340:intergenic 35.0%
!!! CCTGTGGTTCTTATTTTTAC+CGG - tig0014626:57517-57536 Msa1355340:intergenic 35.0%
ATGTTATGCCACATGAAGTT+CGG + tig0014626:57601-57620 Msa1355340:CDS 35.0%
! CCAAAAAGCATAGAAGACAA+AGG - tig0014626:57629-57648 Msa1355340:intergenic 35.0%
! CCTTTGTCTTCTATGCTTTT+TGG + tig0014626:57626-57645 Msa1355340:CDS 35.0%
! TGACTCTAAAGGAATTCCTT+TGG - tig0014626:57695-57714 Msa1355340:intergenic 35.0%
GAGTCAATGTACACTATATG+GGG + tig0014626:57709-57728 Msa1355340:CDS 35.0%
! TTTTGGTCTCGGTATGTTAA+AGG + tig0014626:57742-57761 Msa1355340:CDS 35.0%
TTTACCAGTGGATAGTACAC+CGG + tig0014626:51562-51581 Msa1355340:CDS 40.0%
! CCAATATTGATGGCAGTTAC+CGG - tig0014626:51584-51603 Msa1355340:intergenic 40.0%
GTAACTGCCATCAATATTGG+TGG + tig0014626:51584-51603 Msa1355340:CDS 40.0%
ATATCCATAAAGAAGGCCAC+CGG - tig0014626:51654-51673 Msa1355340:intergenic 40.0%
! CTTTCCAGACATTCTGAGAA+AGG + tig0014626:51838-51857 Msa1355340:CDS 40.0%
ATACATATTCACTTCGGCAC+TGG - tig0014626:51867-51886 Msa1355340:intergenic 40.0%
ACGTCTTCTCTTTATCTAGC+TGG + tig0014626:51920-51939 Msa1355340:CDS 40.0%
CGGAGAAACGTCATCATAAT+AGG + tig0014626:51989-52008 Msa1355340:CDS 40.0%
!! ATTTTGGGTCGTGTTCTTCT+TGG + tig0014626:52073-52092 Msa1355340:CDS 40.0%
!! TTTTGGGTCGTGTTCTTCTT+GGG + tig0014626:52074-52093 Msa1355340:CDS 40.0%
GACGGAAACAAACTTGTGTA+TGG - tig0014626:52315-52334 Msa1355340:intergenic 40.0%
GAGGATGTAGATTAGACGAA+TGG - tig0014626:52547-52566 Msa1355340:intergenic 40.0%
TTACAAGGTGGGGTTTAGTA+TGG + tig0014626:52803-52822 Msa1355340:intron 40.0%
TACAAGGTGGGGTTTAGTAT+GGG + tig0014626:52804-52823 Msa1355340:intron 40.0%
GGAAAGAGATGGAAGAAGAA+GGG - tig0014626:53146-53165 Msa1355340:intergenic 40.0%
AGGAAAGAGATGGAAGAAGA+AGG - tig0014626:53147-53166 Msa1355340:intergenic 40.0%
!! GAGGAGATGGATTGGAAAAA+AGG - tig0014626:53167-53186 Msa1355340:intergenic 40.0%
TTTGTGGTTGTTTGTCGTGA+GGG - tig0014626:53210-53229 Msa1355340:intergenic 40.0%
ACGACAAACAACCACAAACA+CGG + tig0014626:53212-53231 Msa1355340:intron 40.0%
GACAACTAAAACCGTGTTTG+TGG - tig0014626:53226-53245 Msa1355340:intergenic 40.0%
! TGCTTAACCCAATCGATTCT+AGG - tig0014626:53308-53327 Msa1355340:intergenic 40.0%
CGTGTAAAAGAATTGAAGGG+AGG - tig0014626:53456-53475 Msa1355340:intergenic 40.0%
CCACCGTGTAAAAGAATTGA+AGG - tig0014626:53460-53479 Msa1355340:intergenic 40.0%
! CCTTCAATTCTTTTACACGG+TGG + tig0014626:53457-53476 Msa1355340:intron 40.0%
AGAGCAATTGTAAAACGAGG+TGG - tig0014626:53869-53888 Msa1355340:intergenic 40.0%
GCATAATATATGCAGGGTAC+AGG + tig0014626:55082-55101 Msa1355340:intron 40.0%
!!! ATCTTTTTTTTGTGGTGGCC+GGG - tig0014626:55132-55151 Msa1355340:intergenic 40.0%
!!! CATCTTTTTTTTGTGGTGGC+CGG - tig0014626:55133-55152 Msa1355340:intergenic 40.0%
TACACGTGTACGAGTTTAAG+AGG + tig0014626:55889-55908 Msa1355340:intron 40.0%
GCAGTTTCAGATAGGTACAA+CGG - tig0014626:56523-56542 Msa1355340:intergenic 40.0%
CACAGGCTTTCAATTCTTCT+TGG + tig0014626:56570-56589 Msa1355340:CDS 40.0%
ATTCTTCTTGGGAATTGGTG+TGG + tig0014626:56582-56601 Msa1355340:CDS 40.0%
TGTTGATCCCTGTAAGTTGT+TGG - tig0014626:56939-56958 Msa1355340:intergenic 40.0%
ACCTAACCTCTTTCATTCTG+TGG + tig0014626:56975-56994 Msa1355340:CDS 40.0%
CCTAACCTCTTTCATTCTGT+GGG + tig0014626:56976-56995 Msa1355340:CDS 40.0%
CAAAACCCACAGAATGAAAG+AGG - tig0014626:56984-57003 Msa1355340:intergenic 40.0%
! CTCTTTCATTCTGTGGGTTT+TGG + tig0014626:56982-57001 Msa1355340:CDS 40.0%
AACGGATCCAAGTATAATGG+CGG - tig0014626:57028-57047 Msa1355340:intergenic 40.0%
TTGTCTAACCTTATCTCTGC+TGG + tig0014626:57054-57073 Msa1355340:CDS 40.0%
CAACAATACCAGCAGAGATA+AGG - tig0014626:57065-57084 Msa1355340:intergenic 40.0%
GCTGGTATTGTTGATCGAAT+TGG + tig0014626:57072-57091 Msa1355340:CDS 40.0%
TACAACTATTGCATTGCCCT+TGG - tig0014626:57413-57432 Msa1355340:intergenic 40.0%
GGGCAATGCAATAGTTGTAT+TGG + tig0014626:57414-57433 Msa1355340:CDS 40.0%
CTATTGTGTTTGTACACTGC+TGG + tig0014626:57439-57458 Msa1355340:CDS 40.0%
!!! TGTTTGTACACTGCTGGTTT+TGG + tig0014626:57445-57464 Msa1355340:CDS 40.0%
CTTGGAATAAGCCATGTTAG+AGG - tig0014626:57484-57503 Msa1355340:intergenic 40.0%
TTTACCGGGAAAATCTCACT+TGG - tig0014626:57502-57521 Msa1355340:intergenic 40.0%
CCGGTAAAAATAAGAACCAC+AGG + tig0014626:57514-57533 Msa1355340:CDS 40.0%
AACAGCTATACTTTGTCCTG+TGG - tig0014626:57533-57552 Msa1355340:intergenic 40.0%
TGTTATGCCACATGAAGTTC+GGG + tig0014626:57602-57621 Msa1355340:CDS 40.0%
AAAGGAATTCCTTTGGTCTC+AGG - tig0014626:57688-57707 Msa1355340:intergenic 40.0%
CGGTATGTTAAAGGACAAGA+TGG + tig0014626:57751-57770 Msa1355340:CDS 40.0%
CCGGTAACTGCCATCAATAT+TGG + tig0014626:51581-51600 Msa1355340:CDS 45.0%
GGATATGATCTCGGAGTTTC+AGG + tig0014626:51668-51687 Msa1355340:CDS 45.0%
!! TTCAGGAGGTGTTACAACGA+TGG + tig0014626:51796-51815 Msa1355340:intron 45.0%
TGTGACTTTGCTAGCTGCAA+TGG - tig0014626:51957-51976 Msa1355340:intergenic 45.0%
AGCAAAGTCACAGCAGCTTA+TGG + tig0014626:51965-51984 Msa1355340:CDS 45.0%
AAGTCACAGCAGCTTATGGT+CGG + tig0014626:51969-51988 Msa1355340:CDS 45.0%
ACACGACCCAAAATGAGCAT+GGG - tig0014626:52067-52086 Msa1355340:intergenic 45.0%
AACACGACCCAAAATGAGCA+TGG - tig0014626:52068-52087 Msa1355340:intergenic 45.0%
GTCGTGTTCTTCTTGGGTTT+GGG + tig0014626:52080-52099 Msa1355340:CDS 45.0%
TCGTGTTCTTCTTGGGTTTG+GGG + tig0014626:52081-52100 Msa1355340:CDS 45.0%
GACGGCCAAGATTAATTACC+TGG + tig0014626:52895-52914 Msa1355340:intron 45.0%
TTGAAGGAGAAAGGAGGAGA+TGG - tig0014626:53180-53199 Msa1355340:intergenic 45.0%
AAGAGGTTGAAGGAGAAAGG+AGG - tig0014626:53186-53205 Msa1355340:intergenic 45.0%
GGAAAGAGGTTGAAGGAGAA+AGG - tig0014626:53189-53208 Msa1355340:intergenic 45.0%
TTGTTTGTCGTGAGGGAAAG+AGG - tig0014626:53203-53222 Msa1355340:intergenic 45.0%
GTTTGTGGTTGTTTGTCGTG+AGG - tig0014626:53211-53230 Msa1355340:intergenic 45.0%
GTTGTTGGAGAGAAGATGGA+AGG + tig0014626:53655-53674 Msa1355340:intron 45.0%
!! AAAGTGTCCTTTTCCAGGAC+AGG - tig0014626:53807-53826 Msa1355340:intergenic 45.0%
!!! ATGGGAAAGTGTCCTTTTCC+AGG - tig0014626:53812-53831 Msa1355340:intergenic 45.0%
TGGAAAAGGACACTTTCCCA+TGG + tig0014626:53811-53830 Msa1355340:intron 45.0%
AAAAGGACACTTTCCCATGG+TGG + tig0014626:53814-53833 Msa1355340:intron 45.0%
AAAGGACACTTTCCCATGGT+GGG + tig0014626:53815-53834 Msa1355340:intron 45.0%
!!! GGACAGTTTTTTCCCACCAT+GGG - tig0014626:53830-53849 Msa1355340:intergenic 45.0%
!!! TGGACAGTTTTTTCCCACCA+TGG - tig0014626:53831-53850 Msa1355340:intergenic 45.0%
GGAAAAAACTGTCCATTCCC+AGG + tig0014626:53836-53855 Msa1355340:intron 45.0%
GGGAGAGTAAAAGGAGTTAG+AGG - tig0014626:54753-54772 Msa1355340:intergenic 45.0%
! ACTAGCTCGTGACTCTGTTT+TGG + tig0014626:54832-54851 Msa1355340:intron 45.0%
!!! CTCTGTTTTGGCTCGTTTCT+AGG + tig0014626:54844-54863 Msa1355340:intron 45.0%
GGGAGGTTGAATAGATCAAC+CGG - tig0014626:54961-54980 Msa1355340:intergenic 45.0%
TGAACTTAGCTCAGTTGGCA+TGG + tig0014626:55054-55073 Msa1355340:intron 45.0%
TTGGTGGAGCAGTTTCAGAT+AGG - tig0014626:56531-56550 Msa1355340:intergenic 45.0%
CTGAAACTGCTCCACCAAAA+TGG + tig0014626:56533-56552 Msa1355340:CDS 45.0%
!!! TTGAAAGTGCCTCGCCATTT+TGG - tig0014626:56550-56569 Msa1355340:intergenic 45.0%
CCTGCAGTTGTGATGACAAT+CGG + tig0014626:56682-56701 Msa1355340:CDS 45.0%
!! CATTCGGTGTATCGGTTATG+AGG - tig0014626:56714-56733 Msa1355340:intergenic 45.0%
CTCATAACCGATACACCGAA+TGG + tig0014626:56712-56731 Msa1355340:CDS 45.0%
!! TACCAAGCCATTCGGTGTAT+CGG - tig0014626:56722-56741 Msa1355340:intergenic 45.0%
! ATATCGACCTCACTTGGTGA+TGG + tig0014626:56894-56913 Msa1355340:CDS 45.0%
CCCACAGAATGAAAGAGGTT+AGG - tig0014626:56979-56998 Msa1355340:intergenic 45.0%
! ATGTAGCCGACTCACTTAGT+GGG + tig0014626:57237-57256 Msa1355340:intron 45.0%
CCTTATCCCACTAAGTGAGT+CGG - tig0014626:57246-57265 Msa1355340:intergenic 45.0%
!!! TGTACACTGCTGGTTTTGGT+TGG + tig0014626:57449-57468 Msa1355340:CDS 45.0%
GTTATGCCACATGAAGTTCG+GGG + tig0014626:57603-57622 Msa1355340:CDS 45.0%
TTCTTCTTGCCTGAGACCAA+AGG + tig0014626:57676-57695 Msa1355340:CDS 45.0%
GTTACCGGTGTACTATCCAC+TGG - tig0014626:51569-51588 Msa1355340:intergenic 50.0%
ATAAAGAAGGCCACCGGATG+CGG - tig0014626:51648-51667 Msa1355340:intergenic 50.0%
GCTGCCTTTCTCAGAATGTC+TGG - tig0014626:51845-51864 Msa1355340:intergenic 50.0%
TGGCGCCATTAATGGTGGTT+CGG + tig0014626:52033-52052 Msa1355340:CDS 50.0%
GGTCGTGTTCTTCTTGGGTT+TGG + tig0014626:52079-52098 Msa1355340:CDS 50.0%
! GTTCTTCTTGGGTTTGGGGT+TGG + tig0014626:52085-52104 Msa1355340:CDS 50.0%
GGTGGGGTTTAGTATGGGAA+TGG + tig0014626:52809-52828 Msa1355340:intron 50.0%
! TTTTCGTGGGGCCCACAAAT+TGG - tig0014626:52955-52974 Msa1355340:intergenic 50.0%
GGAGAAAGGAGGAGATGGAT+TGG - tig0014626:53175-53194 Msa1355340:intergenic 50.0%
TCGTGAGGGAAAGAGGTTGA+AGG - tig0014626:53196-53215 Msa1355340:intergenic 50.0%
!! AGTGATGATGGGAAGAGGAG+AGG + tig0014626:53570-53589 Msa1355340:intron 50.0%
GGAGAGGAGAGAAGGAAACT+CGG + tig0014626:53586-53605 Msa1355340:intron 50.0%
CCAACTGAGCTAAGTTCACG+AGG - tig0014626:55052-55071 Msa1355340:intergenic 50.0%
CCTCGTGAACTTAGCTCAGT+TGG + tig0014626:55049-55068 Msa1355340:intron 50.0%
!! AAAGTGCCTCGCCATTTTGG+TGG - tig0014626:56547-56566 Msa1355340:intergenic 50.0%
TGGCTGCATAAACTACGCCA+CGG + tig0014626:56612-56631 Msa1355340:CDS 50.0%
ACTCTCTCTTGGACTTGCAG+TGG + tig0014626:56657-56676 Msa1355340:CDS 50.0%
CCGATTGTCATCACAACTGC+AGG - tig0014626:56685-56704 Msa1355340:intergenic 50.0%
!! CGGTGTATCGGTTATGAGGA+AGG - tig0014626:56710-56729 Msa1355340:intergenic 50.0%
AACCGATACACCGAATGGCT+TGG + tig0014626:56717-56736 Msa1355340:CDS 50.0%
CCACGTTCTACCAAGCCATT+CGG - tig0014626:56730-56749 Msa1355340:intergenic 50.0%
! AAGGGCATATCGACCTCACT+TGG + tig0014626:56888-56907 Msa1355340:CDS 50.0%
! CATGTAGCCGACTCACTTAG+TGG + tig0014626:57236-57255 Msa1355340:intron 50.0%
CCGACTCACTTAGTGGGATA+AGG + tig0014626:57243-57262 Msa1355340:intron 50.0%
GATTGCTGTGTCCATTGTGC+TGG + tig0014626:57351-57370 Msa1355340:intron 50.0%
!!! TGCTGGTTTTGGTTGGTCGT+GGG + tig0014626:57456-57475 Msa1355340:CDS 50.0%
ACACTATATGGGGCAGACAC+TGG + tig0014626:57719-57738 Msa1355340:CDS 50.0%
!!! TATGGGGCAGACACTGGTTT+TGG + tig0014626:57725-57744 Msa1355340:CDS 50.0%
!!! GCAGACACTGGTTTTGGTCT+CGG + tig0014626:57731-57750 Msa1355340:CDS 50.0%
! GACTGGTGGGGTTTTACCAG+TGG + tig0014626:51550-51569 Msa1355340:CDS 55.0%
ACCTGCATAGTTGCCGCATC+CGG + tig0014626:51632-51651 Msa1355340:CDS 55.0%
GCATCCGGTGGCCTTCTTTA+TGG + tig0014626:51647-51666 Msa1355340:CDS 55.0%
ATTGCCGGTGGCGCCATTAA+TGG + tig0014626:52025-52044 Msa1355340:CDS 55.0%
ACCACCATTAATGGCGCCAC+CGG - tig0014626:52032-52051 Msa1355340:intergenic 55.0%
TGGGAAGAGGAGAGGAGAGA+AGG + tig0014626:53578-53597 Msa1355340:intron 55.0%
GAGGAGAGAAGGAAACTCGG+TGG + tig0014626:53589-53608 Msa1355340:intron 55.0%
ACAGGTGGCAGTGGGAAAAC+CGG - tig0014626:53789-53808 Msa1355340:intergenic 55.0%
TTTCCAGGACAGGTGGCAGT+GGG - tig0014626:53797-53816 Msa1355340:intergenic 55.0%
! TTTTCCAGGACAGGTGGCAG+TGG - tig0014626:53798-53817 Msa1355340:intergenic 55.0%
ACTGCCACCTGTCCTGGAAA+AGG + tig0014626:53797-53816 Msa1355340:intron 55.0%
! GTGTCCTTTTCCAGGACAGG+TGG - tig0014626:53804-53823 Msa1355340:intergenic 55.0%
AACGAGGTGGCGTTTAGCCT+GGG - tig0014626:53856-53875 Msa1355340:intergenic 55.0%
AAACGAGGTGGCGTTTAGCC+TGG - tig0014626:53857-53876 Msa1355340:intergenic 55.0%
! TTTGTGGTGGCCGGGTTTTG+TGG - tig0014626:55124-55143 Msa1355340:intergenic 55.0%
ACTGCTCCACCAAAATGGCG+AGG + tig0014626:56538-56557 Msa1355340:CDS 55.0%
! TGGCGAGGCACTTTCAACAC+AGG + tig0014626:56553-56572 Msa1355340:CDS 55.0%
GGCGTAGTTTATGCAGCCAG+CGG - tig0014626:56611-56630 Msa1355340:intergenic 55.0%
TCTCCATCCCCATGTGTGCT+TGG - tig0014626:56638-56657 Msa1355340:intergenic 55.0%
TGGGGATGGAGACTCTCTCT+TGG + tig0014626:56646-56665 Msa1355340:CDS 55.0%
!! CCGAATGGCTTGGTAGAACG+TGG + tig0014626:56727-56746 Msa1355340:CDS 55.0%
GCGAATGCCATCACCAAGTG+AGG - tig0014626:56904-56923 Msa1355340:intergenic 55.0%
!!! TCTGTGGGTTTTGGACGCGA+CGG + tig0014626:56991-57010 Msa1355340:CDS 55.0%
! TGTGTCCATTGTGCTGGCAG+TGG + tig0014626:57357-57376 Msa1355340:CDS 55.0%
AGTCACCACTGCCAGCACAA+TGG - tig0014626:57365-57384 Msa1355340:intergenic 55.0%
! ATTGTGCTGGCAGTGGTGAC+TGG + tig0014626:57364-57383 Msa1355340:CDS 55.0%
! GCAGTGGTGACTGGTGTTGA+TGG + tig0014626:57373-57392 Msa1355340:CDS 55.0%
!!! CTGCTGGTTTTGGTTGGTCG+TGG + tig0014626:57455-57474 Msa1355340:CDS 55.0%
!!! GCTGGTTTTGGTTGGTCGTG+GGG + tig0014626:57457-57476 Msa1355340:CDS 55.0%
CAAAGGCCCCGAACTTCATG+TGG - tig0014626:57612-57631 Msa1355340:intergenic 55.0%
ACCGGATGCGGCAACTATGC+AGG - tig0014626:51636-51655 Msa1355340:intergenic 60.0%
TGCATAGTTGCCGCATCCGG+TGG + tig0014626:51635-51654 Msa1355340:CDS 60.0%
GGCGGTGCTCTCTTCATTGC+CGG + tig0014626:52010-52029 Msa1355340:CDS 60.0%
GGTGCTCTCTTCATTGCCGG+TGG + tig0014626:52013-52032 Msa1355340:CDS 60.0%
TTTCCCACTGCCACCTGTCC+TGG + tig0014626:53791-53810 Msa1355340:intron 60.0%
GGTGGCGTTTAGCCTGGGAA+TGG - tig0014626:53851-53870 Msa1355340:intergenic 60.0%
ACCCCGACCACCACAAAACC+CGG + tig0014626:55111-55130 Msa1355340:intron 60.0%
!! TGGCCGGGTTTTGTGGTGGT+CGG - tig0014626:55117-55136 Msa1355340:intergenic 60.0%
GGAATTGGTGTGGTTGCCGC+TGG + tig0014626:56592-56611 Msa1355340:CDS 60.0%
GCCGGTGGCGCCATTAATGG+TGG + tig0014626:52028-52047 Msa1355340:CDS 65.0%
!! GCCGGGTTTTGTGGTGGTCG+GGG - tig0014626:55115-55134 Msa1355340:intergenic 65.0%
!! GGCCGGGTTTTGTGGTGGTC+GGG - tig0014626:55116-55135 Msa1355340:intergenic 65.0%
!! GTGGTGGCCGGGTTTTGTGG+TGG - tig0014626:55121-55140 Msa1355340:intergenic 65.0%
ACGCCACGGCCAAGCACACA+TGG + tig0014626:56626-56645 Msa1355340:CDS 65.0%
CGCCACGGCCAAGCACACAT+GGG + tig0014626:56627-56646 Msa1355340:CDS 65.0%
GCCACGGCCAAGCACACATG+GGG + tig0014626:56628-56647 Msa1355340:CDS 65.0%
TCCCCATGTGTGCTTGGCCG+TGG - tig0014626:56632-56651 Msa1355340:intergenic 65.0%
CGGCCAAGCACACATGGGGA+TGG + tig0014626:56632-56651 Msa1355340:CDS 65.0%
GGTCGTGGGGCCCTCTAACA+TGG + tig0014626:57470-57489 Msa1355340:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0014626 gene 51548 57792 51548 ID=Msa1355340;Name=Msa1355340
tig0014626 mRNA 51548 57792 51548 ID=Msa1355340-mRNA-1;Parent=Msa1355340;Name=Msa1355340-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0|0|1|1|1|4|0|510
tig0014626 exon 51548 51689 51548 ID=Msa1355340-mRNA-1:exon:9437;Parent=Msa1355340-mRNA-1
tig0014626 exon 51801 52120 51801 ID=Msa1355340-mRNA-1:exon:9438;Parent=Msa1355340-mRNA-1
tig0014626 exon 56514 57143 56514 ID=Msa1355340-mRNA-1:exon:9439;Parent=Msa1355340-mRNA-1
tig0014626 exon 57352 57792 57352 ID=Msa1355340-mRNA-1:exon:9440;Parent=Msa1355340-mRNA-1
tig0014626 CDS 51548 51689 51548 ID=Msa1355340-mRNA-1:cds;Parent=Msa1355340-mRNA-1
tig0014626 CDS 51801 52120 51801 ID=Msa1355340-mRNA-1:cds;Parent=Msa1355340-mRNA-1
tig0014626 CDS 56514 57143 56514 ID=Msa1355340-mRNA-1:cds;Parent=Msa1355340-mRNA-1
tig0014626 CDS 57352 57792 57352 ID=Msa1355340-mRNA-1:cds;Parent=Msa1355340-mRNA-1
Gene Sequence

>Msa1355340

ATGACTGGTGGGGTTTTACCAGTGGATAGTACACCGGTAACTGCCATCAATATTGGTGGCAAGTTAACACTCTCAATCATCATTACCTGCATAGTTGCCGCATCCGGTGGCCTTCTTTATGGATATGATCTCGGAGTTTCAGGAGGTGTTACAACGATGGTGCCATTTCTCGAAAAATTCTTTCCAGACATTCTGAGAAAGGCAGCCAGTGCCGAAGTGAATATGTATTGTGTGTATGACAGTCAAATATTGACATTATTTACGTCTTCTCTTTATCTAGCTGGATTAGTGTCATCCATTGCAGCTAGCAAAGTCACAGCAGCTTATGGTCGGAGAAACGTCATCATAATAGGCGGTGCTCTCTTCATTGCCGGTGGCGCCATTAATGGTGGTTCGGAAAATATTCCCATGCTCATTTTGGGTCGTGTTCTTCTTGGGTTTGGGGTTGGTTTCACTAATCAAGCTGCACCGTTGTACCTATCTGAAACTGCTCCACCAAAATGGCGAGGCACTTTCAACACAGGCTTTCAATTCTTCTTGGGAATTGGTGTGGTTGCCGCTGGCTGCATAAACTACGCCACGGCCAAGCACACATGGGGATGGAGACTCTCTCTTGGACTTGCAGTGGTTCCTGCAGTTGTGATGACAATCGGTTCCTTCCTCATAACCGATACACCGAATGGCTTGGTAGAACGTGGTAAGATAGAGCAAGCCAAAGAAGCTTTACGCAAAATTAGAGGATTCTCCGTTGATATTGAACCTGAGTTAGAAGAACTTATTAAGTGGACAGAAATTGCAAAATCAGTGCAACAAGAGCCCTTCAAAACCATTTTAAAAAGGGCATATCGACCTCACTTGGTGATGGCATTCGCAATCCCATTTTTCCAACAACTTACAGGGATCAACATAGTAGCCTTTTATTCACCTAACCTCTTTCATTCTGTGGGTTTTGGACGCGACGGCGCTTTACTTTCCGCCATTATACTTGGATCCGTTAGTCTTTTGTCTAACCTTATCTCTGCTGGTATTGTTGATCGAATTGGTCGAAGATTCTTGTTCATATCTGGGGGAATTATGATGCTTGTCTGCTTGATTGCTGTGTCCATTGTGCTGGCAGTGGTGACTGGTGTTGATGGTACAAAAGATATATCCAAGGGCAATGCAATAGTTGTATTGGTGCTATTGTGTTTGTACACTGCTGGTTTTGGTTGGTCGTGGGGCCCTCTAACATGGCTTATTCCAAGTGAGATTTTCCCGGTAAAAATAAGAACCACAGGACAAAGTATAGCTGTTGCAGTGCAATTCATAATAATCTTTGTGTTATCGCAAACATTCTTGACAATGTTATGCCACATGAAGTTCGGGGCCTTTGTCTTCTATGCTTTTTGGGTTATTGTGATGACTCTATTTGTTATCTTCTTCTTGCCTGAGACCAAAGGAATTCCTTTAGAGTCAATGTACACTATATGGGGCAGACACTGGTTTTGGTCTCGGTATGTTAAAGGACAAGATGGCCTAGAAAATCTTCCATGA

Protein sequence

>Msa1355340

MTGGVLPVDSTPVTAINIGGKLTLSIIITCIVAASGGLLYGYDLGVSGGVTTMVPFLEKFFPDILRKAASAEVNMYCVYDSQILTLFTSSLYLAGLVSSIAASKVTAAYGRRNVIIIGGALFIAGGAINGGSENIPMLILGRVLLGFGVGFTNQAAPLYLSETAPPKWRGTFNTGFQFFLGIGVVAAGCINYATAKHTWGWRLSLGLAVVPAVVMTIGSFLITDTPNGLVERGKIEQAKEALRKIRGFSVDIEPELEELIKWTEIAKSVQQEPFKTILKRAYRPHLVMAFAIPFFQQLTGINIVAFYSPNLFHSVGFGRDGALLSAIILGSVSLLSNLISAGIVDRIGRRFLFISGGIMMLVCLIAVSIVLAVVTGVDGTKDISKGNAIVVLVLLCLYTAGFGWSWGPLTWLIPSEIFPVKIRTTGQSIAVAVQFIIIFVLSQTFLTMLCHMKFGAFVFYAFWVIVMTLFVIFFLPETKGIPLESMYTIWGRHWFWSRYVKGQDGLENLP*