AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0197510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0197510 MtrunA17_Chr2g0289661 86.017 236 5 1 1 236 1 208 3.74e-142 396
Msa0197510 MtrunA17_Chr3g0100061 39.153 189 59 7 1 188 1 134 3.58e-24 94.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0197510 AT4G22320.2 43.233 266 85 9 1 232 1 234 3.90e-51 166
Msa0197510 AT4G22320.1 43.071 267 85 9 1 232 1 235 1.06e-50 165
Msa0197510 AT5G55210.1 46.018 113 47 5 1 109 1 103 2.20e-20 85.1

Find 104 sgRNAs with CRISPR-Local

Find 431 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTCTCTCTAGAGATTAT+TGG 0.204341 2_1:-15519938 None:intergenic
CTTATTTCGACAGAATATTA+TGG 0.213818 2_1:+15526190 Msa0197510:three_prime_UTR
TGAAAGTTTGGATTTGAGTT+TGG 0.236449 2_1:+15525821 Msa0197510:CDS
CCAAACTTTCATTGAGATCT+TGG 0.239878 2_1:-15525809 None:intergenic
ATTCTGTCGAAATAAGTATC+TGG 0.266492 2_1:-15526183 None:intergenic
TCTCTAGAGAGAGAAATAAA+AGG 0.274793 2_1:+15519945 Msa0197510:five_prime_UTR
GCAATTGAATCAGCCTCTAT+TGG 0.282241 2_1:-15524569 None:intergenic
CATTACCGTTGGCGTTGTTC+TGG 0.285973 2_1:-15520322 None:intergenic
TTATTCTTCAATGTCCTTGC+TGG 0.294270 2_1:+15526092 Msa0197510:three_prime_UTR
ATCCAAAGTCTCATTCTTGC+TGG 0.301781 2_1:-15524603 None:intergenic
ATTGGGACATCATTTATATC+AGG 0.312687 2_1:-15524632 None:intergenic
TTGTTCTGGCTTTGAGTAAT+AGG 0.314463 2_1:-15520308 None:intergenic
CCAAGATCTCAATGAAAGTT+TGG 0.320577 2_1:+15525809 Msa0197510:CDS
GAAAGTTTGGATTTGAGTTT+GGG 0.321986 2_1:+15525822 Msa0197510:CDS
TTATTTCGACAGAATATTAT+GGG 0.347407 2_1:+15526191 Msa0197510:three_prime_UTR
GGAAGGAGTTGGGGCCCGAC+TGG 0.365432 2_1:+15520097 Msa0197510:CDS
AAGTGATTCAGTCTTTATAT+TGG 0.372073 2_1:+15525966 Msa0197510:three_prime_UTR
CGACAGAATATTATGGGACT+TGG 0.378389 2_1:+15526197 Msa0197510:three_prime_UTR
TTCTTCTTCCATCTTCTAAC+CGG 0.386693 2_1:-15520164 None:intergenic
AGTGGTACCAAGACATGAAC+AGG 0.390541 2_1:+15525927 Msa0197510:three_prime_UTR
AACCGTTGCCGGTCCGTAAC+GGG 0.398651 2_1:-15520132 None:intergenic
TTTACCTCGCTTTCTTCCAT+TGG 0.399400 2_1:-15524650 None:intergenic
GAAGGAGTTGGGGCCCGACT+GGG 0.403600 2_1:+15520098 Msa0197510:CDS
TAGTTAAGATGGAAGGAGTT+GGG 0.405924 2_1:+15520087 Msa0197510:exon
ATCTGTTTAGTTAGTTAAGA+TGG 0.406788 2_1:+15520076 Msa0197510:exon
TTAGAAGATGGAAGAAGAAA+TGG 0.421147 2_1:+15520168 Msa0197510:CDS
GGTCCAGTGAAAACCGTTGC+CGG 0.427428 2_1:-15520143 None:intergenic
AAGGAGTTGGGGCCCGACTG+GGG 0.435265 2_1:+15520099 Msa0197510:CDS
TTACCTCGCTTTCTTCCATT+GGG 0.437105 2_1:-15524649 None:intergenic
AGAGTGAAGGATGGTGGGAC+TGG 0.438391 2_1:-15524245 None:intergenic
GGATTGTTGTAGTGGCATAT+TGG 0.444744 2_1:+15526046 Msa0197510:three_prime_UTR
TGGATAAAGCTCATCAGAGT+TGG 0.445066 2_1:-15524206 None:intergenic
GGTCGAGGACCGCCCCAGTC+GGG 0.446534 2_1:-15520111 None:intergenic
TTGATTCGCGTTGTTGTTGT+TGG 0.447191 2_1:-15520225 None:intergenic
TAATGGAAATGGTAGTGTTA+AGG 0.450864 2_1:+15520340 Msa0197510:CDS
TAAGGATGCGGCGGTGGAGC+CGG 0.460006 2_1:+15520358 Msa0197510:CDS
TGCCGGTCCGTAACGGGTCG+AGG 0.461095 2_1:-15520126 None:intergenic
TTAGTTAAGATGGAAGGAGT+TGG 0.465864 2_1:+15520086 Msa0197510:exon
CTCTAGAGAGAGAAATAAAA+GGG 0.467546 2_1:+15519946 Msa0197510:five_prime_UTR
AACGCCAACGGTAATGGAAA+TGG 0.469248 2_1:+15520329 Msa0197510:CDS
GAGTGAAAATTCACTTCTGC+AGG 0.472039 2_1:-15525989 None:intergenic
CGCCGCGGTGGCTCTTCCAC+CGG 0.473021 2_1:-15520377 None:intergenic
AAAGTCTCATTCTTGCTGGT+TGG 0.473240 2_1:-15524599 None:intergenic
TAGAGGTGGATCGGAGTAAT+CGG 0.474960 2_1:+15520046 Msa0197510:five_prime_UTR
GGGCGGTCCTCGACCCGTTA+CGG 0.475450 2_1:+15520119 Msa0197510:CDS
AGGCCACCCTGTTCATGTCT+TGG 0.476308 2_1:-15525934 None:intergenic
CAGAACAACGCCAACGGTAA+TGG 0.484308 2_1:+15520323 Msa0197510:CDS
AACCAGCAAGAATGAGACTT+TGG 0.493904 2_1:+15524601 Msa0197510:CDS
TTCTGTCGAAATAAGTATCT+GGG 0.493983 2_1:-15526182 None:intergenic
AGAAGATGAGGTTACCGAAA+AGG 0.495946 2_1:+15524529 Msa0197510:CDS
GCGCAAGTTTAAATATGTTC+CGG 0.503111 2_1:+15520397 Msa0197510:CDS
GGGTCGAGGACCGCCCCAGT+CGG 0.506478 2_1:-15520112 None:intergenic
CTGATTAGAATATGTAATGC+AGG 0.511155 2_1:+15526116 Msa0197510:three_prime_UTR
TAGTGTTAAGGATGCGGCGG+TGG 0.519864 2_1:+15520352 Msa0197510:CDS
GACCCGTTACGGACCGGCAA+CGG 0.519944 2_1:+15520130 Msa0197510:CDS
GAGTGAAGGATGGTGGGACT+GGG 0.522076 2_1:-15524244 None:intergenic
GGATGCGGCGGTGGAGCCGG+TGG 0.522408 2_1:+15520361 Msa0197510:CDS
TCACTGGACCGGTTAGAAGA+TGG 0.523030 2_1:+15520156 Msa0197510:CDS
GTTTAGTTAGTTAAGATGGA+AGG 0.523466 2_1:+15520080 Msa0197510:exon
GGATAAAGCTCATCAGAGTT+GGG 0.524155 2_1:-15524205 None:intergenic
AAACCGTTGCCGGTCCGTAA+CGG 0.525502 2_1:-15520133 None:intergenic
TATCATTGTTAGAGGTGGAT+CGG 0.529797 2_1:+15520037 Msa0197510:five_prime_UTR
CAATCCAACCTAAAACAGCT+AGG 0.534797 2_1:-15526029 None:intergenic
ACTACCATTTCCATTACCGT+TGG 0.537906 2_1:-15520333 None:intergenic
TTTAGGTTGGATTGTTGTAG+TGG 0.541144 2_1:+15526038 Msa0197510:three_prime_UTR
AGATGAATCTAATCCAATAG+AGG 0.542007 2_1:+15524556 Msa0197510:CDS
GTCCTCGACCCGTTACGGAC+CGG 0.543170 2_1:+15520124 Msa0197510:CDS
ATAAATGCAACAGGTCTACA+AGG 0.545268 2_1:+15524174 Msa0197510:intron
TACTGAAGAGTGAAGGATGG+TGG 0.557344 2_1:-15524251 None:intergenic
TAGAAGATGGAAGAAGAAAT+GGG 0.558328 2_1:+15520169 Msa0197510:CDS
GAAGCAGAAGAAGAAGATGA+AGG 0.566557 2_1:-15520203 None:intergenic
TTGAGTTACTGACCATCTGT+AGG 0.578623 2_1:-15525894 None:intergenic
AACGGTAGTAACGGTAATAA+CGG 0.579507 2_1:+15520257 Msa0197510:CDS
TATTTAAACTTGCGCCGCGG+TGG 0.581873 2_1:-15520389 None:intergenic
GCGAATCAAAACCACGCTAA+CGG 0.583452 2_1:+15520239 Msa0197510:CDS
GAGTTGGGGCCCGACTGGGG+CGG 0.583534 2_1:+15520102 Msa0197510:CDS
AGTTAAGATGGAAGGAGTTG+GGG 0.584907 2_1:+15520088 Msa0197510:exon
TGATATAAATGATGTCCCAA+TGG 0.590965 2_1:+15524634 Msa0197510:CDS
TAACTCAAGGCGAACTCAAG+TGG 0.592781 2_1:+15525909 Msa0197510:exon
AAATGGTAGTGTTAAGGATG+CGG 0.594445 2_1:+15520346 Msa0197510:CDS
GCTTTATCCAGCTCCAACGA+GGG 0.600953 2_1:+15524219 Msa0197510:CDS
ACTGAAGAGTGAAGGATGGT+GGG 0.602340 2_1:-15524250 None:intergenic
TACCGTTACTACCGTTAGCG+TGG 0.602464 2_1:-15520250 None:intergenic
AAAACTAATCAACCTACAGA+TGG 0.605067 2_1:+15525882 Msa0197510:CDS
ACAAAATTACTGAAGAGTGA+AGG 0.608623 2_1:-15524258 None:intergenic
AAACGAGGCTACAGAAGATG+AGG 0.611248 2_1:+15524517 Msa0197510:CDS
AACCACGCTAACGGTAGTAA+CGG 0.617581 2_1:+15520248 Msa0197510:CDS
AATCCAACCTAAAACAGCTA+GGG 0.628319 2_1:-15526028 None:intergenic
AATTACTGAAGAGTGAAGGA+TGG 0.630258 2_1:-15524254 None:intergenic
TACAGATGGTCAGTAACTCA+AGG 0.631001 2_1:+15525896 Msa0197510:exon
CTGAATCACTTAGAATCATG+AGG 0.648923 2_1:-15525954 None:intergenic
CTTTATCCAGCTCCAACGAG+GGG 0.651634 2_1:+15524220 Msa0197510:CDS
TGGTAGTGTTAAGGATGCGG+CGG 0.652841 2_1:+15520349 Msa0197510:CDS
AGCTTTATCCAGCTCCAACG+AGG 0.653307 2_1:+15524218 Msa0197510:CDS
GGTGGATCGGAGTAATCGGA+AGG 0.653485 2_1:+15520050 Msa0197510:five_prime_UTR
CAAAGCCAGAACAACGCCAA+CGG 0.656094 2_1:+15520317 Msa0197510:CDS
GATGTAGGTTGCTGTACTAG+AGG 0.677780 2_1:+15524487 Msa0197510:intron
TGTCCCAATGGAAGAAAGCG+AGG 0.691638 2_1:+15524646 Msa0197510:CDS
TTTATCCAGCTCCAACGAGG+GGG 0.695603 2_1:+15524221 Msa0197510:CDS
AGCCGGTGGAAGAGCCACCG+CGG 0.703301 2_1:+15520375 Msa0197510:CDS
ATATTCTAATCAGACCAGCA+AGG 0.732683 2_1:-15526106 None:intergenic
ACATATTTAAACTTGCGCCG+CGG 0.746093 2_1:-15520392 None:intergenic
GTGGTACCAAGACATGAACA+GGG 0.756050 2_1:+15525928 Msa0197510:three_prime_UTR
GTACCAAGACATGAACAGGG+TGG 0.813087 2_1:+15525931 Msa0197510:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTTTAAAAGAAAAAAAT+TGG - chr2_1:15520003-15520022 None:intergenic 10.0%
!!! TTCTTTATTTATCTTTTTAT+TGG + chr2_1:15520446-15520465 Msa0197510:intron 10.0%
!! CTAATAATGATTAAAAAAAT+TGG + chr2_1:15521018-15521037 Msa0197510:intron 10.0%
!! CAAATTATTGAAAAATAATT+TGG - chr2_1:15521693-15521712 None:intergenic 10.0%
!! CAAATTATTGAAAAATAATT+TGG - chr2_1:15521693-15521712 None:intergenic 10.0%
!! AAAGAAAAAAATTGGATATT+TGG - chr2_1:15519995-15520014 None:intergenic 15.0%
!!! TCTAACAATGATAAAATTTT+TGG - chr2_1:15520030-15520049 None:intergenic 15.0%
!!! AAAAATTTTATCATTGTTAG+AGG + chr2_1:15520029-15520048 Msa0197510:five_prime_UTR 15.0%
!! TTTATTGGATTTGAATATTA+TGG + chr2_1:15520461-15520480 Msa0197510:intron 15.0%
!!! TATTTTTTATTTCAAGTGTT+TGG + chr2_1:15521093-15521112 Msa0197510:intron 15.0%
!!! TTTTTAATATATCTTTAGGA+TGG + chr2_1:15521771-15521790 Msa0197510:intron 15.0%
!! TTAAAAACAAAATCATTTGA+CGG - chr2_1:15522129-15522148 None:intergenic 15.0%
!!! ATGATTTTGTTTTTAAACAA+TGG + chr2_1:15522133-15522152 Msa0197510:intron 15.0%
!!! ATGATTTTTTGTTTAAGAAA+TGG + chr2_1:15522519-15522538 Msa0197510:intron 15.0%
!!! TTTGTTTTCTAAAAAATAGT+CGG + chr2_1:15523432-15523451 Msa0197510:intron 15.0%
!! AATTATTAAATGATTTATCG+TGG - chr2_1:15524357-15524376 None:intergenic 15.0%
!!! TTTCTTTTTAAAAGTTTGAA+TGG + chr2_1:15524869-15524888 Msa0197510:intron 15.0%
!!! ATATGTTTTCTTAAACTAAA+TGG + chr2_1:15525000-15525019 Msa0197510:intron 15.0%
!! TCAAATATTGTAAAAGAAAA+TGG - chr2_1:15525280-15525299 None:intergenic 15.0%
!!! TTTATTTTAAATTGCTAACA+AGG - chr2_1:15525425-15525444 None:intergenic 15.0%
!!! AAATTTTAGAAAATTGAAAC+AGG + chr2_1:15525448-15525467 Msa0197510:intron 15.0%
!! TACATAATAAAGGTAATAAA+AGG - chr2_1:15525741-15525760 None:intergenic 15.0%
!!! TTTTATAGGATGAATTCATA+GGG + chr2_1:15520567-15520586 Msa0197510:intron 20.0%
!!! GAATTAGCATTGATATTTTA+TGG + chr2_1:15520609-15520628 Msa0197510:intron 20.0%
!!! AAAATTGATTTTGACATGTT+CGG + chr2_1:15520691-15520710 Msa0197510:intron 20.0%
!!! GTTAATTGTTTGCATTTTTA+TGG + chr2_1:15520903-15520922 Msa0197510:intron 20.0%
!! GATTAAAAAAATTGGTGAAA+AGG + chr2_1:15521026-15521045 Msa0197510:intron 20.0%
!!! AAACTACCACAATTTTTTAT+GGG - chr2_1:15521384-15521403 None:intergenic 20.0%
!!! AAAACTACCACAATTTTTTA+TGG - chr2_1:15521385-15521404 None:intergenic 20.0%
!! TAAATATGATAAATGCAAGT+TGG + chr2_1:15521433-15521452 Msa0197510:intron 20.0%
!!! TAAAAGATAATTGAAGTGTT+AGG - chr2_1:15522183-15522202 None:intergenic 20.0%
!!! ACACTTCAATTATCTTTTAA+TGG + chr2_1:15522184-15522203 Msa0197510:intron 20.0%
!! CTATTAGTTATTAAAAAGAG+TGG + chr2_1:15522292-15522311 Msa0197510:intron 20.0%
!! TATTAAAAAGAGTGGTAAAA+CGG + chr2_1:15522300-15522319 Msa0197510:intron 20.0%
!!! TATAGGTACAAATTAGTTTT+TGG + chr2_1:15522428-15522447 Msa0197510:intron 20.0%
!! TACGAAATAAAGTTAACTAA+TGG + chr2_1:15522615-15522634 Msa0197510:intron 20.0%
!! ACGAAATAAAGTTAACTAAT+GGG + chr2_1:15522616-15522635 Msa0197510:intron 20.0%
!!! ATTGGCAAACAATAATTTTT+TGG + chr2_1:15523215-15523234 Msa0197510:intron 20.0%
!! TCATATAACTTTACAATACT+AGG + chr2_1:15523861-15523880 Msa0197510:intron 20.0%
!!! TTACATTCTGGAAAAATTTA+TGG - chr2_1:15524723-15524742 None:intergenic 20.0%
!!! TTTTTAAAAGTTTGAATGGT+GGG + chr2_1:15524873-15524892 Msa0197510:intron 20.0%
!!! TACTGACAAAAGTTTTTTTT+TGG - chr2_1:15525052-15525071 None:intergenic 20.0%
!! ATAATACATTAAGAAAGTTG+AGG - chr2_1:15525137-15525156 None:intergenic 20.0%
!! CTATATTCTCTTATATTGAT+TGG - chr2_1:15525240-15525259 None:intergenic 20.0%
!!! AATGTTTTCCAAAAGTAATT+AGG + chr2_1:15525472-15525491 Msa0197510:intron 20.0%
!! TGCTCAATAAAAAAACTAAA+TGG + chr2_1:15525532-15525551 Msa0197510:intron 20.0%
!! GCTCAATAAAAAAACTAAAT+GGG + chr2_1:15525533-15525552 Msa0197510:intron 20.0%
!! TACCTTTATTATGTATAATG+AGG + chr2_1:15525746-15525765 Msa0197510:intron 20.0%
!! TTATTTCGACAGAATATTAT+GGG + chr2_1:15526191-15526210 Msa0197510:three_prime_UTR 20.0%
!! AATTTTATCATTGTTAGAGG+TGG + chr2_1:15520032-15520051 Msa0197510:five_prime_UTR 25.0%
! ATCTGTTTAGTTAGTTAAGA+TGG + chr2_1:15520076-15520095 Msa0197510:exon 25.0%
!!! GGTTTTATGAGTTTAGTTTA+GGG + chr2_1:15520544-15520563 Msa0197510:intron 25.0%
!!! AGTTTAGTTTAGGGTTTTAT+AGG + chr2_1:15520553-15520572 Msa0197510:intron 25.0%
!! GTTTTATAGGATGAATTCAT+AGG + chr2_1:15520566-15520585 Msa0197510:intron 25.0%
!! AATTCAAGTTTAAACTCTGA+AGG - chr2_1:15520742-15520761 None:intergenic 25.0%
!! AATTGATAATTAACTGACCA+AGG + chr2_1:15520926-15520945 Msa0197510:intron 25.0%
!! AAGATACTAAAATGTCCTTT+TGG + chr2_1:15521117-15521136 Msa0197510:intron 25.0%
! TTTCCAAATGACAAAAGTTT+AGG + chr2_1:15521144-15521163 Msa0197510:intron 25.0%
!! TTTAGGAACAAATTCGTTTT+TGG + chr2_1:15521161-15521180 Msa0197510:intron 25.0%
! AGAATTCCCATAAAAAATTG+TGG + chr2_1:15521375-15521394 Msa0197510:intron 25.0%
!! ATAATTGAAGTGTTAGGTTT+AGG - chr2_1:15522177-15522196 None:intergenic 25.0%
! TAGATAAAACACATTCTATG+AGG - chr2_1:15522275-15522294 None:intergenic 25.0%
!!! GAATTTTTTATCGAAGTGTT+CGG + chr2_1:15522360-15522379 Msa0197510:intron 25.0%
!! ATACTAAAATGCCTTTTTGT+CGG + chr2_1:15522387-15522406 Msa0197510:intron 25.0%
!!! TTAGTTTTTGGTTAACTTTG+TGG + chr2_1:15522440-15522459 Msa0197510:intron 25.0%
! TGTTTAATACATCTTTAGCA+TGG + chr2_1:15523025-15523044 Msa0197510:intron 25.0%
! TTGATATTGCTAATCCTTTA+AGG - chr2_1:15523169-15523188 None:intergenic 25.0%
! TCAAATGTCATGAATTTGAT+TGG + chr2_1:15523197-15523216 Msa0197510:intron 25.0%
!!! TTGGCTATTTTAATGTTAAG+TGG + chr2_1:15523234-15523253 Msa0197510:intron 25.0%
!!! AGACTTTTAGAACATCAATT+TGG - chr2_1:15523273-15523292 None:intergenic 25.0%
! ACAGAATATTCCATTATGTT+CGG - chr2_1:15523523-15523542 None:intergenic 25.0%
!!! ATATTCTGTTTTGTTCTCTT+TGG + chr2_1:15523534-15523553 Msa0197510:intron 25.0%
! CTTTACACGTAAATTAGAAT+GGG - chr2_1:15523618-15523637 None:intergenic 25.0%
!!! ATATGTTTTTTCTTGGTAGA+TGG - chr2_1:15523671-15523690 None:intergenic 25.0%
! TTTGATAAGTGTGTTAAACA+AGG - chr2_1:15523703-15523722 None:intergenic 25.0%
! AATAACACTTATGTTGGAAA+TGG + chr2_1:15523748-15523767 Msa0197510:intron 25.0%
! GATTCAAAAATTGACAACTA+TGG - chr2_1:15523843-15523862 None:intergenic 25.0%
! ATATATCATGTTCAGTAGTA+TGG + chr2_1:15524420-15524439 Msa0197510:intron 25.0%
! TATATCATGTTCAGTAGTAT+GGG + chr2_1:15524421-15524440 Msa0197510:intron 25.0%
! TAAACATGAAGTAAATGAAG+AGG - chr2_1:15524686-15524705 None:intergenic 25.0%
! TCTGGAAAAATTTATGGTAT+TGG - chr2_1:15524717-15524736 None:intergenic 25.0%
!!! TTGTTTTTGTAGTTAGAATC+AGG + chr2_1:15524794-15524813 Msa0197510:intron 25.0%
!!! AGAAGTTTCAATCTTTTTCA+TGG + chr2_1:15524833-15524852 Msa0197510:intron 25.0%
!!! CTTTTTAAAAGTTTGAATGG+TGG + chr2_1:15524872-15524891 Msa0197510:intron 25.0%
!! TTTTAAATGTGTCCAAGAAA+TGG - chr2_1:15524932-15524951 None:intergenic 25.0%
! CAGAAACACGATAAATAAAT+GGG - chr2_1:15525199-15525218 None:intergenic 25.0%
! ACAGAAACACGATAAATAAA+TGG - chr2_1:15525200-15525219 None:intergenic 25.0%
!! AACTATGTCCTAATTACTTT+TGG - chr2_1:15525483-15525502 None:intergenic 25.0%
! GTCCTCATTATACATAATAA+AGG - chr2_1:15525751-15525770 None:intergenic 25.0%
! AAGTGATTCAGTCTTTATAT+TGG + chr2_1:15525966-15525985 Msa0197510:three_prime_UTR 25.0%
! AAAAATTCTGCTCAATGATT+GGG - chr2_1:15526161-15526180 None:intergenic 25.0%
! AAAAAATTCTGCTCAATGAT+TGG - chr2_1:15526162-15526181 None:intergenic 25.0%
! CTTATTTCGACAGAATATTA+TGG + chr2_1:15526190-15526209 Msa0197510:three_prime_UTR 25.0%
! TTTCTCTCTCTAGAGATTAT+TGG - chr2_1:15519941-15519960 None:intergenic 30.0%
! TCTCTAGAGAGAGAAATAAA+AGG + chr2_1:15519945-15519964 Msa0197510:five_prime_UTR 30.0%
! CTCTAGAGAGAGAAATAAAA+GGG + chr2_1:15519946-15519965 Msa0197510:five_prime_UTR 30.0%
GTTTAGTTAGTTAAGATGGA+AGG + chr2_1:15520080-15520099 Msa0197510:exon 30.0%
TTAGAAGATGGAAGAAGAAA+TGG + chr2_1:15520168-15520187 Msa0197510:CDS 30.0%
TAGAAGATGGAAGAAGAAAT+GGG + chr2_1:15520169-15520188 Msa0197510:CDS 30.0%
!! CTCATCTTCTTCTTTTTAAG+TGG + chr2_1:15520282-15520301 Msa0197510:CDS 30.0%
! TAATGGAAATGGTAGTGTTA+AGG + chr2_1:15520340-15520359 Msa0197510:CDS 30.0%
GCATTGTAATTGAACATTAC+CGG - chr2_1:15520419-15520438 None:intergenic 30.0%
!! GGGTTTTATGAGTTTAGTTT+AGG + chr2_1:15520543-15520562 Msa0197510:intron 30.0%
TGGATGCTGATATATATGTT+TGG + chr2_1:15520629-15520648 Msa0197510:intron 30.0%
CAGAGTTTAAACTTGAATTC+AGG + chr2_1:15520743-15520762 Msa0197510:intron 30.0%
GTAAAAATCACGTTTAGACT+CGG - chr2_1:15520780-15520799 None:intergenic 30.0%
AGAGTGATATGAATGTAAAG+TGG - chr2_1:15520854-15520873 None:intergenic 30.0%
AACAGAAACACAAACATGTT+TGG - chr2_1:15520886-15520905 None:intergenic 30.0%
CTGTTGTTCATCGTATTTAT+TGG + chr2_1:15520949-15520968 Msa0197510:intron 30.0%
AAAGGAAGATAAGTAGTGTA+AGG + chr2_1:15521044-15521063 Msa0197510:intron 30.0%
! GTTCCTAAACTTTTGTCATT+TGG - chr2_1:15521150-15521169 None:intergenic 30.0%
!!! TTCGTTTTTGGTTAACTTTG+CGG + chr2_1:15521173-15521192 Msa0197510:intron 30.0%
CAGTTTGATGAAACTAGAAT+CGG + chr2_1:15521219-15521238 Msa0197510:intron 30.0%
AGTTTGATGAAACTAGAATC+GGG + chr2_1:15521220-15521239 Msa0197510:intron 30.0%
! AAAATTGTGGTAGTTTTCGT+AGG + chr2_1:15521388-15521407 Msa0197510:intron 30.0%
! AAGGATTCTTTTTGTGGAAA+TGG + chr2_1:15521577-15521596 Msa0197510:intron 30.0%
! TTCTTTTTGTGGAAATGGAA+AGG + chr2_1:15521582-15521601 Msa0197510:intron 30.0%
ATGGAAAAAGAGGATCTATT+TGG + chr2_1:15521649-15521668 Msa0197510:intron 30.0%
!!! TGTTATTTTCTTTGTTCGTG+TGG + chr2_1:15521711-15521730 Msa0197510:intron 30.0%
! GTCGGTTCTATTGTTATATT+AGG + chr2_1:15521824-15521843 Msa0197510:intron 30.0%
ACATTTGAGGACTAAATTGA+GGG - chr2_1:15521900-15521919 None:intergenic 30.0%
AATCAACTTCATGACATTTG+AGG - chr2_1:15521913-15521932 None:intergenic 30.0%
! TCAAATGTCATGAAGTTGAT+TGG + chr2_1:15521912-15521931 Msa0197510:intron 30.0%
ATTGGTAAACAAGAAGTTCT+GGG + chr2_1:15521930-15521949 Msa0197510:intron 30.0%
ACTGATAGGATTTCAAATTG+AGG + chr2_1:15522087-15522106 Msa0197510:intron 30.0%
AGGATTTCAAATTGAGGTAT+TGG + chr2_1:15522093-15522112 Msa0197510:intron 30.0%
AATACCATGTACAACAATCT+TGG - chr2_1:15522227-15522246 None:intergenic 30.0%
ATTCTATGAGGTAAATCTAC+GGG - chr2_1:15522263-15522282 None:intergenic 30.0%
CATTCTATGAGGTAAATCTA+CGG - chr2_1:15522264-15522283 None:intergenic 30.0%
!! GTTTTGATGAAACTAGAATC+AGG + chr2_1:15522488-15522507 Msa0197510:intron 30.0%
ATGGGAACTCATACAAAAAA+TGG + chr2_1:15522634-15522653 Msa0197510:intron 30.0%
AAATCATCTACAATAAACGC+AGG + chr2_1:15522686-15522705 Msa0197510:intron 30.0%
ACTCTCTTATTCTCATTCTT+TGG - chr2_1:15522801-15522820 None:intergenic 30.0%
!!! AAGGATTATTTTGGTGGAAA+TGG + chr2_1:15522834-15522853 Msa0197510:intron 30.0%
!!! TTATTTTGGTGGAAATGGAA+AGG + chr2_1:15522839-15522858 Msa0197510:intron 30.0%
TATCTTTACATAGTGGTTTG+TGG + chr2_1:15522867-15522886 Msa0197510:intron 30.0%
ACAAAGTCTAATGGAAAAAG+AGG + chr2_1:15522896-15522915 Msa0197510:intron 30.0%
! GTTATTGTCTTTATTTCGTG+TGG + chr2_1:15522964-15522983 Msa0197510:intron 30.0%
CAAAAAAAGTTTACCCAAGA+TGG - chr2_1:15523059-15523078 None:intergenic 30.0%
AGGGTTTACAGTTAATTGTA+CGG - chr2_1:15521881-15521900 None:intergenic 30.0%
! TCCTTTAAGGACTAAATTGA+GGG - chr2_1:15523156-15523175 None:intergenic 30.0%
! ATCCTTTAAGGACTAAATTG+AGG - chr2_1:15523157-15523176 None:intergenic 30.0%
!! TTGATGTTCTAAAAGTCTTG+AGG + chr2_1:15523275-15523294 Msa0197510:intron 30.0%
!!! TACGTTTTGATTCCACTAAA+TGG - chr2_1:15523576-15523595 None:intergenic 30.0%
TGGGAAATGAAGTTTAAAAG+TGG - chr2_1:15523599-15523618 None:intergenic 30.0%
GCTTTACACGTAAATTAGAA+TGG - chr2_1:15523619-15523638 None:intergenic 30.0%
!!! GGGACATATATGTTTTTTCT+TGG - chr2_1:15523678-15523697 None:intergenic 30.0%
TAAGTGTGTTAAACAAGGAT+GGG - chr2_1:15523698-15523717 None:intergenic 30.0%
ATAAGTGTGTTAAACAAGGA+TGG - chr2_1:15523699-15523718 None:intergenic 30.0%
!!! CATAAGTGTTATTTTCCCAA+GGG - chr2_1:15523741-15523760 None:intergenic 30.0%
!!! ACATAAGTGTTATTTTCCCA+AGG - chr2_1:15523742-15523761 None:intergenic 30.0%
TGGGAAAATAACACTTATGT+TGG + chr2_1:15523742-15523761 Msa0197510:intron 30.0%
TACATAAAAAAGACCGTTGA+AGG - chr2_1:15523783-15523802 None:intergenic 30.0%
TGATCAACAAATGTGTTTGA+GGG - chr2_1:15523807-15523826 None:intergenic 30.0%
TGTGAACTCATCTATAAACA+AGG + chr2_1:15524093-15524112 Msa0197510:intron 30.0%
GTGAACTCATCTATAAACAA+GGG + chr2_1:15524094-15524113 Msa0197510:intron 30.0%
TGAACTCATCTATAAACAAG+GGG + chr2_1:15524095-15524114 Msa0197510:intron 30.0%
ACAAAATTACTGAAGAGTGA+AGG - chr2_1:15524261-15524280 None:intergenic 30.0%
ATATCATGTTCAGTAGTATG+GGG + chr2_1:15524422-15524441 Msa0197510:intron 30.0%
! AGATTCATCTTCAACCTTTT+CGG - chr2_1:15524546-15524565 None:intergenic 30.0%
AGATGAATCTAATCCAATAG+AGG + chr2_1:15524556-15524575 Msa0197510:CDS 30.0%
ATTGGGACATCATTTATATC+AGG - chr2_1:15524635-15524654 None:intergenic 30.0%
TGATATAAATGATGTCCCAA+TGG + chr2_1:15524634-15524653 Msa0197510:CDS 30.0%
! TCCCTTTTATCAATCTAAGT+CGG - chr2_1:15524773-15524792 None:intergenic 30.0%
TTTGACAACTGTTTGAAGAT+TGG + chr2_1:15525092-15525111 Msa0197510:intron 30.0%
ATACATTAAGAAAGTTGAGG+AGG - chr2_1:15525134-15525153 None:intergenic 30.0%
TGTATTATGTCTGATGCATT+AGG + chr2_1:15525149-15525168 Msa0197510:intron 30.0%
GTATTATGTCTGATGCATTA+GGG + chr2_1:15525150-15525169 Msa0197510:intron 30.0%
TATTATGTCTGATGCATTAG+GGG + chr2_1:15525151-15525170 Msa0197510:intron 30.0%
GAAAATGGTGTGAAAAATGT+TGG - chr2_1:15525265-15525284 None:intergenic 30.0%
TTAAATTGCTAACAAGGAGA+TGG - chr2_1:15525419-15525438 None:intergenic 30.0%
TGAAACAATAACAGAGGAAA+AGG - chr2_1:15525509-15525528 None:intergenic 30.0%
! TAGACTTTGGACAAGTTTTA+TGG + chr2_1:15525569-15525588 Msa0197510:intron 30.0%
! TGAAAGTTTGGATTTGAGTT+TGG + chr2_1:15525821-15525840 Msa0197510:CDS 30.0%
! GAAAGTTTGGATTTGAGTTT+GGG + chr2_1:15525822-15525841 Msa0197510:CDS 30.0%
AAAACTAATCAACCTACAGA+TGG + chr2_1:15525882-15525901 Msa0197510:CDS 30.0%
CTGATTAGAATATGTAATGC+AGG + chr2_1:15526116-15526135 Msa0197510:three_prime_UTR 30.0%
TTCTGTCGAAATAAGTATCT+GGG - chr2_1:15526185-15526204 None:intergenic 30.0%
ATTCTGTCGAAATAAGTATC+TGG - chr2_1:15526186-15526205 None:intergenic 30.0%
TATCATTGTTAGAGGTGGAT+CGG + chr2_1:15520037-15520056 Msa0197510:five_prime_UTR 35.0%
TTAGTTAAGATGGAAGGAGT+TGG + chr2_1:15520086-15520105 Msa0197510:exon 35.0%
TAGTTAAGATGGAAGGAGTT+GGG + chr2_1:15520087-15520106 Msa0197510:exon 35.0%
TTCTTCTTCCATCTTCTAAC+CGG - chr2_1:15520167-15520186 None:intergenic 35.0%
AACGGTAGTAACGGTAATAA+CGG + chr2_1:15520257-15520276 Msa0197510:CDS 35.0%
!! TTGTTCTGGCTTTGAGTAAT+AGG - chr2_1:15520311-15520330 None:intergenic 35.0%
! AAATGGTAGTGTTAAGGATG+CGG + chr2_1:15520346-15520365 Msa0197510:CDS 35.0%
GCGCAAGTTTAAATATGTTC+CGG + chr2_1:15520397-15520416 Msa0197510:CDS 35.0%
! TATATGTTTGGTTCCACGTT+TGG + chr2_1:15520641-15520660 Msa0197510:intron 35.0%
! AATGTAAAGTGGCTTGTGTT+TGG - chr2_1:15520843-15520862 None:intergenic 35.0%
AATGTACCGAGATGGAAATA+TGG + chr2_1:15521292-15521311 Msa0197510:intron 35.0%
ATGGAAATATGGATGCCTTA+CGG + chr2_1:15521303-15521322 Msa0197510:intron 35.0%
! AGTTTTCGTAGGATTGGATT+TGG + chr2_1:15521399-15521418 Msa0197510:intron 35.0%
! GAATGAGAATCCAAGAGTAT+TGG + chr2_1:15521546-15521565 Msa0197510:intron 35.0%
TATCTTTACACTGTGGTTTG+TGG + chr2_1:15521610-15521629 Msa0197510:intron 35.0%
TTTCCATTAGACTCTGACTA+TGG - chr2_1:15521636-15521655 None:intergenic 35.0%
TCAGAGTCTAATGGAAAAAG+AGG + chr2_1:15521639-15521658 Msa0197510:intron 35.0%
ATAACCATATACTGACACGA+TGG - chr2_1:15521751-15521770 None:intergenic 35.0%
!!! CTGGGAAAAGCTTTTTTTGT+CGG + chr2_1:15521806-15521825 Msa0197510:intron 35.0%
GACATTTGAGGACTAAATTG+AGG - chr2_1:15521901-15521920 None:intergenic 35.0%
GATTGGTAAACAAGAAGTTC+TGG + chr2_1:15521929-15521948 Msa0197510:intron 35.0%
TTGATGTTCTCAAAATCTCG+AGG + chr2_1:15521979-15521998 Msa0197510:intron 35.0%
AAAATCTCGAGGATCAGAAT+GGG + chr2_1:15521990-15522009 Msa0197510:intron 35.0%
CTAACTAACTCAAATGCATC+AGG - chr2_1:15522038-15522057 None:intergenic 35.0%
!! AAATTGAGGTATTGGCATGA+TGG + chr2_1:15522101-15522120 Msa0197510:intron 35.0%
! TTTGCGAATGACAGAAGTAT+AGG + chr2_1:15522411-15522430 Msa0197510:intron 35.0%
!! TGGTACTACTTGCTATAAGT+TGG + chr2_1:15522460-15522479 Msa0197510:intron 35.0%
GGAACTCATACAAAAAATGG+CGG + chr2_1:15522637-15522656 Msa0197510:intron 35.0%
! GTTTTTGTGAGGATAGGATT+TGG + chr2_1:15522662-15522681 Msa0197510:intron 35.0%
! GAATGAGAATAAGAGAGTGT+TGG + chr2_1:15522803-15522822 Msa0197510:intron 35.0%
! GAGTGAGACAAGGATTATTT+TGG + chr2_1:15522825-15522844 Msa0197510:intron 35.0%
!!! TGAGACAAGGATTATTTTGG+TGG + chr2_1:15522828-15522847 Msa0197510:intron 35.0%
GGAAGGATATCTTTACATAG+TGG + chr2_1:15522860-15522879 Msa0197510:intron 35.0%
TGGTTGTAGACAAAGTCTAA+TGG + chr2_1:15522887-15522906 Msa0197510:intron 35.0%
ATAACCATATGCCAACACAA+CGG - chr2_1:15523004-15523023 None:intergenic 35.0%
GTCTGTTCTGTTGTTATATC+AGG + chr2_1:15523078-15523097 Msa0197510:intron 35.0%
ACCCTCAATTTAGTCCTTAA+AGG + chr2_1:15523152-15523171 Msa0197510:intron 35.0%
AAAAGTCTTGAGGATCAGAA+TGG + chr2_1:15523285-15523304 Msa0197510:intron 35.0%
AAAGTCTTGAGGATCAGAAT+GGG + chr2_1:15523286-15523305 Msa0197510:intron 35.0%
TCTAACAAACACAAGTGCAT+CGG - chr2_1:15523335-15523354 None:intergenic 35.0%
TATACCAAGACCGAACATAA+TGG + chr2_1:15523510-15523529 Msa0197510:intron 35.0%
TATTCCATTATGTTCGGTCT+TGG - chr2_1:15523517-15523536 None:intergenic 35.0%
CTCTTCAGTAATCCATTTAG+TGG + chr2_1:15523561-15523580 Msa0197510:intron 35.0%
!!! GTTTTTTCTTGGTAGATGGA+AGG - chr2_1:15523667-15523686 None:intergenic 35.0%
GATCAACAAATGTGTTTGAG+GGG - chr2_1:15523806-15523825 None:intergenic 35.0%
CTGATCAACAAATGTGTTTG+AGG - chr2_1:15523808-15523827 None:intergenic 35.0%
AACTCAAAAAGTTGCTTCTG+TGG + chr2_1:15523899-15523918 Msa0197510:intron 35.0%
TGAGTACAATACAATGACAG+TGG + chr2_1:15523956-15523975 Msa0197510:intron 35.0%
ACAACTGTGAGGTTAATGAT+TGG - chr2_1:15524038-15524057 None:intergenic 35.0%
ATAAATGCAACAGGTCTACA+AGG + chr2_1:15524174-15524193 Msa0197510:intron 35.0%
AATTACTGAAGAGTGAAGGA+TGG - chr2_1:15524257-15524276 None:intergenic 35.0%
TTTGTACTCCGTGATCTATT+TGG + chr2_1:15524276-15524295 Msa0197510:intron 35.0%
ATCAGAGACCAAATAGATCA+CGG - chr2_1:15524287-15524306 None:intergenic 35.0%
!! TCGTTTTGATGCTGATAATC+TGG + chr2_1:15524379-15524398 Msa0197510:intron 35.0%
!! CGTTTTGATGCTGATAATCT+GGG + chr2_1:15524380-15524399 Msa0197510:intron 35.0%
!! TGCCGACTTAGATTGATAAA+AGG + chr2_1:15524768-15524787 Msa0197510:intron 35.0%
! GCCGACTTAGATTGATAAAA+GGG + chr2_1:15524769-15524788 Msa0197510:intron 35.0%
!! ATGTTGCTTTCACCATTTCT+TGG + chr2_1:15524917-15524936 Msa0197510:intron 35.0%
ACAACTGTTTGAAGATTGGA+GGG + chr2_1:15525096-15525115 Msa0197510:intron 35.0%
CAATTGTGATAGAGAGAAGA+TGG - chr2_1:15525379-15525398 None:intergenic 35.0%
! GCAAGTTGAAACAATAACAG+AGG - chr2_1:15525515-15525534 None:intergenic 35.0%
!!! TCGTCTGTCATTTTAGACTT+TGG + chr2_1:15525556-15525575 Msa0197510:intron 35.0%
CCAAACTTTCATTGAGATCT+TGG - chr2_1:15525812-15525831 None:intergenic 35.0%
CCAAGATCTCAATGAAAGTT+TGG + chr2_1:15525809-15525828 Msa0197510:CDS 35.0%
CTGAATCACTTAGAATCATG+AGG - chr2_1:15525957-15525976 None:intergenic 35.0%
AATCCAACCTAAAACAGCTA+GGG - chr2_1:15526031-15526050 None:intergenic 35.0%
!! TTTAGGTTGGATTGTTGTAG+TGG + chr2_1:15526038-15526057 Msa0197510:three_prime_UTR 35.0%
TTATTCTTCAATGTCCTTGC+TGG + chr2_1:15526092-15526111 Msa0197510:three_prime_UTR 35.0%
ATATTCTAATCAGACCAGCA+AGG - chr2_1:15526109-15526128 None:intergenic 35.0%
AGTTAAGATGGAAGGAGTTG+GGG + chr2_1:15520088-15520107 Msa0197510:exon 40.0%
GAAGCAGAAGAAGAAGATGA+AGG - chr2_1:15520206-15520225 None:intergenic 40.0%
! TTGATTCGCGTTGTTGTTGT+TGG - chr2_1:15520228-15520247 None:intergenic 40.0%
ACTACCATTTCCATTACCGT+TGG - chr2_1:15520336-15520355 None:intergenic 40.0%
ACATATTTAAACTTGCGCCG+CGG - chr2_1:15520395-15520414 None:intergenic 40.0%
TCGTTTGATTCATGTAGTCG+AGG + chr2_1:15520486-15520505 Msa0197510:intron 40.0%
TTTGATTCATGTAGTCGAGG+TGG + chr2_1:15520489-15520508 Msa0197510:intron 40.0%
! AAGACGTGGTTGTTGTTGTT+CGG + chr2_1:15520522-15520541 Msa0197510:intron 40.0%
!! AGGGTTTTAGTGTCTGAGAA+TGG + chr2_1:15520586-15520605 Msa0197510:intron 40.0%
!! GGGTTTTAGTGTCTGAGAAT+GGG + chr2_1:15520587-15520606 Msa0197510:intron 40.0%
! GTGAGTTGAACGATAAACTG+TGG - chr2_1:15520804-15520823 None:intergenic 40.0%
AATACGATGAACAACAGCCT+TGG - chr2_1:15520946-15520965 None:intergenic 40.0%
TCATTTGGAAAGCTGCCAAA+AGG - chr2_1:15521135-15521154 None:intergenic 40.0%
TTGGTTAACTTTGCGGAACT+AGG + chr2_1:15521180-15521199 Msa0197510:intron 40.0%
TGGTTAACTTTGCGGAACTA+GGG + chr2_1:15521181-15521200 Msa0197510:intron 40.0%
AGGCATCCATATTTCCATCT+CGG - chr2_1:15521301-15521320 None:intergenic 40.0%
! TGTGGTAGTTTTCGTAGGAT+TGG + chr2_1:15521393-15521412 Msa0197510:intron 40.0%
ACTCTTGGATTCTCATTCTG+TGG - chr2_1:15521544-15521563 None:intergenic 40.0%
!! TGAGAATCCAAGAGTATTGG+AGG + chr2_1:15521549-15521568 Msa0197510:intron 40.0%
!! GAGAATCCAAGAGTATTGGA+GGG + chr2_1:15521550-15521569 Msa0197510:intron 40.0%
! GGAGACAAGGATTCTTTTTG+TGG + chr2_1:15521571-15521590 Msa0197510:intron 40.0%
! GGAAGCATATCTTTACACTG+TGG + chr2_1:15521603-15521622 Msa0197510:intron 40.0%
! ACATCAATTTGTTCCCTGAG+AGG - chr2_1:15521966-15521985 None:intergenic 40.0%
CAAAATCTCGAGGATCAGAA+TGG + chr2_1:15521989-15522008 Msa0197510:intron 40.0%
AAATCTCGAGGATCAGAATG+GGG + chr2_1:15521991-15522010 Msa0197510:intron 40.0%
AAATCCTATCAGTGATGCAG+CGG - chr2_1:15522080-15522099 None:intergenic 40.0%
CTGACCAAGATTGTTGTACA+TGG + chr2_1:15522220-15522239 Msa0197510:intron 40.0%
ATACCATCAATGCACTGAGA+TGG + chr2_1:15522550-15522569 Msa0197510:intron 40.0%
TTTCCATCTCAGTGCATTGA+TGG - chr2_1:15522556-15522575 None:intergenic 40.0%
ATGGAAATATAGATGCCACG+TGG + chr2_1:15522569-15522588 Msa0197510:intron 40.0%
! AAATGGCGGTAGTTTTTGTG+AGG + chr2_1:15522651-15522670 Msa0197510:intron 40.0%
TTTGGTGGAAATGGAAAGGA+AGG + chr2_1:15522843-15522862 Msa0197510:intron 40.0%
TACTGATCTATCCGTTGTGT+TGG + chr2_1:15522990-15523009 Msa0197510:intron 40.0%
ATGTTAAGTGGCAGTAATCG+AGG + chr2_1:15523246-15523265 Msa0197510:intron 40.0%
CTAACAAACACAAGTGCATC+GGG - chr2_1:15523334-15523353 None:intergenic 40.0%
AAATCCTATCAGAGATGCAG+AGG - chr2_1:15523376-15523395 None:intergenic 40.0%
!!! TTACCTTTTTCGACAGTGCT+CGG + chr2_1:15523485-15523504 Msa0197510:intron 40.0%
ATCATTCAGCTACTGCTCTT+GGG - chr2_1:15523999-15524018 None:intergenic 40.0%
TATCATTCAGCTACTGCTCT+TGG - chr2_1:15524000-15524019 None:intergenic 40.0%
AGCTGAATGATATGTGTCTG+TGG + chr2_1:15524008-15524027 Msa0197510:intron 40.0%
TGAGATGCTAGATCCATCTA+TGG - chr2_1:15524072-15524091 None:intergenic 40.0%
ACTCATCTATAAACAAGGGG+CGG + chr2_1:15524098-15524117 Msa0197510:intron 40.0%
AAGGCTGCAATAAATGCAAC+AGG + chr2_1:15524165-15524184 Msa0197510:intron 40.0%
GGATAAAGCTCATCAGAGTT+GGG - chr2_1:15524208-15524227 None:intergenic 40.0%
TGGATAAAGCTCATCAGAGT+TGG - chr2_1:15524209-15524228 None:intergenic 40.0%
CTGATCTATTCTGTTATGCC+TGG + chr2_1:15524302-15524321 Msa0197510:intron 40.0%
TTTGATGCTGATAATCTGGG+TGG + chr2_1:15524383-15524402 Msa0197510:intron 40.0%
ATGTTCAGTAGTATGGGGAT+TGG + chr2_1:15524427-15524446 Msa0197510:intron 40.0%
TGTTCAGTAGTATGGGGATT+GGG + chr2_1:15524428-15524447 Msa0197510:intron 40.0%
! TCTGGACTATCTGATGATGT+AGG + chr2_1:15524472-15524491 Msa0197510:intron 40.0%
AGAAGATGAGGTTACCGAAA+AGG + chr2_1:15524529-15524548 Msa0197510:CDS 40.0%
GCAATTGAATCAGCCTCTAT+TGG - chr2_1:15524572-15524591 None:intergenic 40.0%
AAAGTCTCATTCTTGCTGGT+TGG - chr2_1:15524602-15524621 None:intergenic 40.0%
AACCAGCAAGAATGAGACTT+TGG + chr2_1:15524601-15524620 Msa0197510:CDS 40.0%
ATCCAAAGTCTCATTCTTGC+TGG - chr2_1:15524606-15524625 None:intergenic 40.0%
TTACCTCGCTTTCTTCCATT+GGG - chr2_1:15524652-15524671 None:intergenic 40.0%
TTTACCTCGCTTTCTTCCAT+TGG - chr2_1:15524653-15524672 None:intergenic 40.0%
GTAAATGAAGAGGCAAGCAA+GGG - chr2_1:15524676-15524695 None:intergenic 40.0%
AGTAAATGAAGAGGCAAGCA+AGG - chr2_1:15524677-15524696 None:intergenic 40.0%
GAGCTGCAGTTATTACATTC+TGG - chr2_1:15524735-15524754 None:intergenic 40.0%
! AATCTAAGTCGGCATTGAGT+TGG - chr2_1:15524762-15524781 None:intergenic 40.0%
GACAACTGTTTGAAGATTGG+AGG + chr2_1:15525095-15525114 Msa0197510:intron 40.0%
TGTGATAGAGAGAAGATGGA+AGG - chr2_1:15525375-15525394 None:intergenic 40.0%
!! ACTTCAATTGAGTTGGTCAC+AGG - chr2_1:15525682-15525701 None:intergenic 40.0%
GCTGTGAACTTCAATTGAGT+TGG - chr2_1:15525689-15525708 None:intergenic 40.0%
GGACTTTATATTTCAGCCTC+AGG + chr2_1:15525767-15525786 Msa0197510:intron 40.0%
! ACTACCTGATTTTTGTCCTG+AGG - chr2_1:15525786-15525805 None:intergenic 40.0%
TTGAGTTACTGACCATCTGT+AGG - chr2_1:15525897-15525916 None:intergenic 40.0%
TACAGATGGTCAGTAACTCA+AGG + chr2_1:15525896-15525915 Msa0197510:exon 40.0%
GAGTGAAAATTCACTTCTGC+AGG - chr2_1:15525992-15526011 None:intergenic 40.0%
! GCAGAAGTGAATTTTCACTC+TGG + chr2_1:15525992-15526011 Msa0197510:three_prime_UTR 40.0%
!! ATTCACTCCCTAGCTGTTTT+AGG + chr2_1:15526021-15526040 Msa0197510:three_prime_UTR 40.0%
CAATCCAACCTAAAACAGCT+AGG - chr2_1:15526032-15526051 None:intergenic 40.0%
GGATTGTTGTAGTGGCATAT+TGG + chr2_1:15526046-15526065 Msa0197510:three_prime_UTR 40.0%
CGACAGAATATTATGGGACT+TGG + chr2_1:15526197-15526216 Msa0197510:three_prime_UTR 40.0%
TAGAGGTGGATCGGAGTAAT+CGG + chr2_1:15520046-15520065 Msa0197510:five_prime_UTR 45.0%
GCGAATCAAAACCACGCTAA+CGG + chr2_1:15520239-15520258 Msa0197510:CDS 45.0%
AACCACGCTAACGGTAGTAA+CGG + chr2_1:15520248-15520267 Msa0197510:CDS 45.0%
!! AACGCCAACGGTAATGGAAA+TGG + chr2_1:15520329-15520348 Msa0197510:CDS 45.0%
ATGTAGTCGAGGTGGTTAGT+GGG + chr2_1:15520497-15520516 Msa0197510:intron 45.0%
! AGACGTGGTTGTTGTTGTTC+GGG + chr2_1:15520523-15520542 Msa0197510:intron 45.0%
AATTCTTGCTGCTCCAAACG+TGG - chr2_1:15520657-15520676 None:intergenic 45.0%
! GGAGCAGCAAGAATTGATTC+TGG + chr2_1:15520662-15520681 Msa0197510:intron 45.0%
CTAGCATGAATGTACCGAGA+TGG + chr2_1:15521284-15521303 Msa0197510:intron 45.0%
TTGTCTCCCTCCAATACTCT+TGG - chr2_1:15521559-15521578 None:intergenic 45.0%
!! AAGAGTATTGGAGGGAGACA+AGG + chr2_1:15521558-15521577 Msa0197510:intron 45.0%
TGGCCATAGTCAGAGTCTAA+TGG + chr2_1:15521630-15521649 Msa0197510:intron 45.0%
TACTGACACGATGGAGAGAT+CGG - chr2_1:15521742-15521761 None:intergenic 45.0%
CTCTCCATCGTGTCAGTATA+TGG + chr2_1:15521744-15521763 Msa0197510:intron 45.0%
!! AGGATGGATTGCTGATCATC+TGG + chr2_1:15521787-15521806 Msa0197510:intron 45.0%
!! GGATGGATTGCTGATCATCT+GGG + chr2_1:15521788-15521807 Msa0197510:intron 45.0%
TGGGCTATTTAATGCCTCTC+AGG + chr2_1:15521949-15521968 Msa0197510:intron 45.0%
GGGCTATTTAATGCCTCTCA+GGG + chr2_1:15521950-15521969 Msa0197510:intron 45.0%
AATCTCGAGGATCAGAATGG+GGG + chr2_1:15521992-15522011 Msa0197510:intron 45.0%
CATTCGCAAAGCCGACAAAA+AGG - chr2_1:15522401-15522420 None:intergenic 45.0%
TATAGATGCCACGTGGTGAA+AGG + chr2_1:15522576-15522595 Msa0197510:intron 45.0%
! GCGGTAGTTTTTGTGAGGAT+AGG + chr2_1:15522656-15522675 Msa0197510:intron 45.0%
! CTATCCGTTGTGTTGGCATA+TGG + chr2_1:15522997-15523016 Msa0197510:intron 45.0%
! CATGGATTGCTGACCATCTT+GGG + chr2_1:15523043-15523062 Msa0197510:intron 45.0%
TTTGCCTCTGCATCTCTGAT+AGG + chr2_1:15523369-15523388 Msa0197510:intron 45.0%
TGGTAGATGGAAGGAAGACA+TGG - chr2_1:15523658-15523677 None:intergenic 45.0%
! ATTTTCCCAAGGGAACACTG+AGG - chr2_1:15523731-15523750 None:intergenic 45.0%
! ATGGCTTGTGCAACCTTCAA+CGG + chr2_1:15523767-15523786 Msa0197510:intron 45.0%
AGTTGCTTCTGTGGTAGACT+TGG + chr2_1:15523908-15523927 Msa0197510:intron 45.0%
AGACAAGTGCTACAACTGTG+AGG - chr2_1:15524049-15524068 None:intergenic 45.0%
GTAGCACTTGTCTCCATAGA+TGG + chr2_1:15524056-15524075 Msa0197510:intron 45.0%
AAGATATGCTGGGAGCTGTA+AGG - chr2_1:15524142-15524161 None:intergenic 45.0%
CAGCCTTGCAAAGATATGCT+GGG - chr2_1:15524152-15524171 None:intergenic 45.0%
ACTGAAGAGTGAAGGATGGT+GGG - chr2_1:15524253-15524272 None:intergenic 45.0%
TACTGAAGAGTGAAGGATGG+TGG - chr2_1:15524254-15524273 None:intergenic 45.0%
! CGAAGTTGACTTCAAGTTCC+AGG - chr2_1:15524323-15524342 None:intergenic 45.0%
GCAATGACATGGTTGCAATC+TGG + chr2_1:15524454-15524473 Msa0197510:intron 45.0%
GATGTAGGTTGCTGTACTAG+AGG + chr2_1:15524487-15524506 Msa0197510:intron 45.0%
ACTAGAGGAGCAGAAAAACG+AGG + chr2_1:15524502-15524521 Msa0197510:CDS 45.0%
AAACGAGGCTACAGAAGATG+AGG + chr2_1:15524517-15524536 Msa0197510:CDS 45.0%
!! GCCATCATTCTGAGACGTTA+GGG + chr2_1:15525173-15525192 Msa0197510:intron 45.0%
TCAGCCTCAGGACAAAAATC+AGG + chr2_1:15525779-15525798 Msa0197510:intron 45.0%
TAACTCAAGGCGAACTCAAG+TGG + chr2_1:15525909-15525928 Msa0197510:exon 45.0%
AGTGGTACCAAGACATGAAC+AGG + chr2_1:15525927-15525946 Msa0197510:three_prime_UTR 45.0%
GTGGTACCAAGACATGAACA+GGG + chr2_1:15525928-15525947 Msa0197510:three_prime_UTR 45.0%
!! ACTCCCTAGCTGTTTTAGGT+TGG + chr2_1:15526025-15526044 Msa0197510:three_prime_UTR 45.0%
!!! TTATTTTTTAATATATCTTT+AGG + chr2_1:15521767-15521786 Msa0197510:intron 5.0%
TCACTGGACCGGTTAGAAGA+TGG + chr2_1:15520156-15520175 Msa0197510:CDS 50.0%
TACCGTTACTACCGTTAGCG+TGG - chr2_1:15520253-15520272 None:intergenic 50.0%
CAAAGCCAGAACAACGCCAA+CGG + chr2_1:15520317-15520336 Msa0197510:CDS 50.0%
CATTACCGTTGGCGTTGTTC+TGG - chr2_1:15520325-15520344 None:intergenic 50.0%
CAGAACAACGCCAACGGTAA+TGG + chr2_1:15520323-15520342 Msa0197510:CDS 50.0%
! TGGTAGTGTTAAGGATGCGG+CGG + chr2_1:15520349-15520368 Msa0197510:CDS 50.0%
TATTTAAACTTGCGCCGCGG+TGG - chr2_1:15520392-15520411 None:intergenic 50.0%
CATGTAGTCGAGGTGGTTAG+TGG + chr2_1:15520496-15520515 Msa0197510:intron 50.0%
GTGGTTAGTGGGATAAGACG+TGG + chr2_1:15520508-15520527 Msa0197510:intron 50.0%
TGACATGTTCGGTTGCTCTC+TGG + chr2_1:15520702-15520721 Msa0197510:intron 50.0%
GCGGAACTAGGGCTATAAGT+TGG + chr2_1:15521192-15521211 Msa0197510:intron 50.0%
TATGGATGCCTTACGGTGAG+CGG + chr2_1:15521310-15521329 Msa0197510:intron 50.0%
TTAGCCGCTGCATCACTGAT+AGG + chr2_1:15522073-15522092 Msa0197510:intron 50.0%
ACTCAACACCTTTCACCACG+TGG - chr2_1:15522587-15522606 None:intergenic 50.0%
!! GTGAAAGGTGTTGAGTGCTG+TGG + chr2_1:15522591-15522610 Msa0197510:intron 50.0%
!! GAGAGTGTTGGAGTGAGACA+AGG + chr2_1:15522815-15522834 Msa0197510:intron 50.0%
! GCATGGATTGCTGACCATCT+TGG + chr2_1:15523042-15523061 Msa0197510:intron 50.0%
! ATGCCGAGCACTGTCGAAAA+AGG - chr2_1:15523491-15523510 None:intergenic 50.0%
ACACTACCTCAGTGTTCCCT+TGG + chr2_1:15523722-15523741 Msa0197510:intron 50.0%
CACTACCTCAGTGTTCCCTT+GGG + chr2_1:15523723-15523742 Msa0197510:intron 50.0%
GCTCCCAGCATATCTTTGCA+AGG + chr2_1:15524146-15524165 Msa0197510:intron 50.0%
GCAGCCTTGCAAAGATATGC+TGG - chr2_1:15524153-15524172 None:intergenic 50.0%
! AGCTTTATCCAGCTCCAACG+AGG + chr2_1:15524218-15524237 Msa0197510:CDS 50.0%
GCTTTATCCAGCTCCAACGA+GGG + chr2_1:15524219-15524238 Msa0197510:CDS 50.0%
CTTTATCCAGCTCCAACGAG+GGG + chr2_1:15524220-15524239 Msa0197510:CDS 50.0%
TTTATCCAGCTCCAACGAGG+GGG + chr2_1:15524221-15524240 Msa0197510:CDS 50.0%
CAGTAGTATGGGGATTGGGA+AGG + chr2_1:15524432-15524451 Msa0197510:intron 50.0%
GGATTGGGAAGGCAATGACA+TGG + chr2_1:15524443-15524462 Msa0197510:intron 50.0%
TGTCCCAATGGAAGAAAGCG+AGG + chr2_1:15524646-15524665 Msa0197510:CDS 50.0%
!! GGCCATCATTCTGAGACGTT+AGG + chr2_1:15525172-15525191 Msa0197510:intron 50.0%
GCCCTAACGTCTCAGAATGA+TGG - chr2_1:15525177-15525196 None:intergenic 50.0%
GTACCAAGACATGAACAGGG+TGG + chr2_1:15525931-15525950 Msa0197510:three_prime_UTR 50.0%
GGTGGATCGGAGTAATCGGA+AGG + chr2_1:15520050-15520069 Msa0197510:five_prime_UTR 55.0%
AAACCGTTGCCGGTCCGTAA+CGG - chr2_1:15520136-15520155 None:intergenic 55.0%
GGTCCAGTGAAAACCGTTGC+CGG - chr2_1:15520146-15520165 None:intergenic 55.0%
! GGCAACGGTTTTCACTGGAC+CGG + chr2_1:15520145-15520164 Msa0197510:CDS 55.0%
TAGTGTTAAGGATGCGGCGG+TGG + chr2_1:15520352-15520371 Msa0197510:CDS 55.0%
! GCGTCGTGGTGCTGAGATAA+CGG + chr2_1:15521343-15521362 Msa0197510:intron 55.0%
!! GAGTGAAGGATGGTGGGACT+GGG - chr2_1:15524247-15524266 None:intergenic 55.0%
!! AGAGTGAAGGATGGTGGGAC+TGG - chr2_1:15524248-15524267 None:intergenic 55.0%
AGGCCACCCTGTTCATGTCT+TGG - chr2_1:15525937-15525956 None:intergenic 55.0%
AACCGTTGCCGGTCCGTAAC+GGG - chr2_1:15520135-15520154 None:intergenic 60.0%
! GGACCGGCAACGGTTTTCAC+TGG + chr2_1:15520140-15520159 Msa0197510:CDS 60.0%
GACAGACACCGCTCACCGTA+AGG - chr2_1:15521321-15521340 None:intergenic 60.0%
GAAGGAGTTGGGGCCCGACT+GGG + chr2_1:15520098-15520117 Msa0197510:CDS 65.0%
AAGGAGTTGGGGCCCGACTG+GGG + chr2_1:15520099-15520118 Msa0197510:CDS 65.0%
GTCCTCGACCCGTTACGGAC+CGG + chr2_1:15520124-15520143 Msa0197510:CDS 65.0%
GACCCGTTACGGACCGGCAA+CGG + chr2_1:15520130-15520149 Msa0197510:CDS 65.0%
TAAGGATGCGGCGGTGGAGC+CGG + chr2_1:15520358-15520377 Msa0197510:CDS 65.0%
GGAAGGAGTTGGGGCCCGAC+TGG + chr2_1:15520097-15520116 Msa0197510:CDS 70.0%
GGGCGGTCCTCGACCCGTTA+CGG + chr2_1:15520119-15520138 Msa0197510:CDS 70.0%
!! TGCCGGTCCGTAACGGGTCG+AGG - chr2_1:15520129-15520148 None:intergenic 70.0%
AGCCGGTGGAAGAGCCACCG+CGG + chr2_1:15520375-15520394 Msa0197510:CDS 70.0%
! GCGGTGTCTGTCGAGCGTCG+TGG + chr2_1:15521329-15521348 Msa0197510:intron 70.0%
GAGTTGGGGCCCGACTGGGG+CGG + chr2_1:15520102-15520121 Msa0197510:CDS 75.0%
GGTCGAGGACCGCCCCAGTC+GGG - chr2_1:15520114-15520133 None:intergenic 75.0%
GGGTCGAGGACCGCCCCAGT+CGG - chr2_1:15520115-15520134 None:intergenic 75.0%
CGCCGCGGTGGCTCTTCCAC+CGG - chr2_1:15520380-15520399 None:intergenic 75.0%
CTGGGCCCCCTCGTTGGAGC+TGG - chr2_1:15524229-15524248 None:intergenic 75.0%
GTGGGACTGGGCCCCCTCGT+TGG - chr2_1:15524235-15524254 None:intergenic 75.0%
! GGATGCGGCGGTGGAGCCGG+TGG + chr2_1:15520361-15520380 Msa0197510:CDS 80.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 15519933 15526236 15519933 ID=Msa0197510;Name=Msa0197510
chr2_1 mRNA 15519933 15526236 15519933 ID=Msa0197510-mRNA-1;Parent=Msa0197510;Name=Msa0197510-mRNA-1;_AED=0.04;_eAED=0.04;_QI=162|0.33|0.75|0.75|1|1|4|325|236
chr2_1 exon 15519933 15520418 15519933 ID=Msa0197510-mRNA-1:exon:6541;Parent=Msa0197510-mRNA-1
chr2_1 exon 15524187 15524270 15524187 ID=Msa0197510-mRNA-1:exon:6542;Parent=Msa0197510-mRNA-1
chr2_1 exon 15524494 15524667 15524494 ID=Msa0197510-mRNA-1:exon:6543;Parent=Msa0197510-mRNA-1
chr2_1 exon 15525783 15526236 15525783 ID=Msa0197510-mRNA-1:exon:6544;Parent=Msa0197510-mRNA-1
chr2_1 five_prime_UTR 15519933 15520094 15519933 ID=Msa0197510-mRNA-1:five_prime_utr;Parent=Msa0197510-mRNA-1
chr2_1 CDS 15520095 15520418 15520095 ID=Msa0197510-mRNA-1:cds;Parent=Msa0197510-mRNA-1
chr2_1 CDS 15524187 15524270 15524187 ID=Msa0197510-mRNA-1:cds;Parent=Msa0197510-mRNA-1
chr2_1 CDS 15524494 15524667 15524494 ID=Msa0197510-mRNA-1:cds;Parent=Msa0197510-mRNA-1
chr2_1 CDS 15525783 15525911 15525783 ID=Msa0197510-mRNA-1:cds;Parent=Msa0197510-mRNA-1
chr2_1 three_prime_UTR 15525912 15526236 15525912 ID=Msa0197510-mRNA-1:three_prime_utr;Parent=Msa0197510-mRNA-1
Gene Sequence

>Msa0197510

ATGGAAGGAGTTGGGGCCCGACTGGGGCGGTCCTCGACCCGTTACGGACCGGCAACGGTTTTCACTGGACCGGTTAGAAGATGGAAGAAGAAATGGGTTCACGTTTCACCTTCATCTTCTTCTTCTGCTTCCAACAACAACAACGCGAATCAAAACCACGCTAACGGTAGTAACGGTAATAACGGTTCTCATCTTCTTCTTTTTAAGTGGACTCCTATTACTCAAAGCCAGAACAACGCCAACGGTAATGGAAATGGTAGTGTTAAGGATGCGGCGGTGGAGCCGGTGGAAGAGCCACCGCGGCGCAAGTTTAAATATGTTCCGGTCTACAAGGTAAGTGAACCCAACTCTGATGAGCTTTATCCAGCTCCAACGAGGGGGCCCAGTCCCACCATCCTTCACTCTTCAGTTGCTGTACTAGAGGAGCAGAAAAACGAGGCTACAGAAGATGAGGTTACCGAAAAGGTTGAAGATGAATCTAATCCAATAGAGGCTGATTCAATTGCAGCAGAACCAACCAGCAAGAATGAGACTTTGGATGAAAAACCTGATATAAATGATGTCCCAATGGAAGAAAGCGAGCCTCAGGACAAAAATCAGGTAGTACGCCAAGATCTCAATGAAAGTTTGGATTTGAGTTTGGGTTTGACATCACATGATGAAGATCAAGATTCTGATTCAAAAACTAATCAACCTACAGATGGTCAGTAA
Protein sequence

>Msa0197510

MEGVGARLGRSSTRYGPATVFTGPVRRWKKKWVHVSPSSSSSASNNNNANQNHANGSNGNNGSHLLLFKWTPITQSQNNANGNGNGSVKDAAVEPVEEPPRRKFKYVPVYKVSEPNSDELYPAPTRGPSPTILHSSVAVLEEQKNEATEDEVTEKVEDESNPIEADSIAAEPTSKNETLDEKPDINDVPMEESEPQDKNQVVRQDLNESLDLSLGLTSHDEDQDSDSKTNQPTDGQ*