AlfalfaGEDB | Msa1081560

M. sativa cultivar zhongmu-4 / Msa1081560

KEGG: -
GO: -
PFAM: PF08524.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1081560	XP_003625863.1	95.312	192	9	0	1	192	1	192	2.72e-109	320

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1081560	G7KQY9	95.312	192	9	0	1	192	1	192	1.30e-109	320

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002490	Msa1081560	0.835222	1.902203e-56	-8.615850e-47
Msa0004060	Msa1081560	0.837014	6.673032e-57	-8.615850e-47
Msa0004860	Msa1081560	0.823184	1.587536e-53	-8.615850e-47
Msa0004920	Msa1081560	0.804400	2.199823e-49	-8.615850e-47
Msa0006880	Msa1081560	0.842674	2.238265e-58	-8.615850e-47
Msa0008410	Msa1081560	0.824815	6.579869e-54	-8.615850e-47
Msa0015140	Msa1081560	0.822170	2.733821e-53	-8.615850e-47
Msa0015680	Msa1081560	0.801410	9.123244e-49	-8.615850e-47
Msa0018620	Msa1081560	0.810961	8.883817e-51	-8.615850e-47
Msa0032260	Msa1081560	0.846503	2.085677e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1081560	MtrunA17_Chr7g0268661	95.312	192	9	0	1	192	1	192	2.50e-113	320

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1081560	AT4G03180.1	51.872	187	71	4	9	189	7	180	7.36e-44	144
Msa1081560	AT4G03180.2	48.571	140	56	2	55	189	7	135	3.06e-25	95.9

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Find 46 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCAGATGAAAATAAA+TGG	0.194245	7_2:+81342025	None:intergenic
AAATCCTGATTAGTGGACTA+GGG	0.577402	7_2:-81342077	Msa1081560:exon
AAATTCAGATGAAAATAAAT+GGG	0.495648	7_2:+81342026	None:intergenic
AACGAGGTTCAGAGCAATTG+AGG	0.500409	7_2:+81344958	None:intergenic
AAGAGAAAGAAAGAATGGAG+AGG	0.596634	7_2:-81342259	Msa1081560:CDS
AATATGTCTTTGGGAGACTG+AGG	0.627209	7_2:+81342690	None:intergenic
AATGCCAAATCCAATAACAG+TGG	0.654269	7_2:-81344790	Msa1081560:CDS
AATTGCATACTTATGAGAGA+TGG	0.531431	7_2:+81344760	None:intergenic
ACAAGGATAAGAATGAGAGG+AGG	0.593062	7_2:-81342343	Msa1081560:CDS
ACTTTCTTAATTATTGTCAA+TGG	0.420017	7_2:-81341985	Msa1081560:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTTGGAAGATTAATTAACG+AGG	+	chr7_2:81342019-81342038	None:intergenic	30.0%
TGACGATGAAGAAGAATAAA+AGG	-	chr7_2:81342094-81342113	Msa1081560:CDS	30.0%
AATTGCATACTTATGAGAGA+TGG	+	chr7_2:81342201-81342220	None:intergenic	30.0%
TATTGCTGCAATTTAATGCT+TGG	-	chr7_2:81342316-81342335	Msa1081560:CDS	30.0%
ATTGCTGCAATTTAATGCTT+GGG	-	chr7_2:81342317-81342336	Msa1081560:CDS	30.0%
GTAAAAAAGATTGCCCAAAA+AGG	+	chr7_2:81342563-81342582	None:intergenic	30.0%
TTTAGGTACATTAACCATGT+CGG	+	chr7_2:81342780-81342799	None:intergenic	30.0%
AGGACAATAACTATATACCA+TGG	+	chr7_2:81342844-81342863	None:intergenic	30.0%
CAAAGAAACAAAAGCAGAAA+GGG	+	chr7_2:81342881-81342900	None:intergenic	30.0%
ACAAAGAAACAAAAGCAGAA+AGG	+	chr7_2:81342882-81342901	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	81341951	81345029	81341951	ID=Msa1081560;Name=Msa1081560
chr7_2	mRNA	81341951	81345029	81341951	ID=Msa1081560-mRNA-1;Parent=Msa1081560;Name=Msa1081560-mRNA-1;_AED=0.19;_eAED=0.19;_QI=88\|1\|1\|1\|0.5\|1\|3\|140\|192
chr7_2	exon	81341951	81342387	81341951	ID=Msa1081560-mRNA-1:exon:20846;Parent=Msa1081560-mRNA-1
chr7_2	exon	81342687	81342796	81342687	ID=Msa1081560-mRNA-1:exon:20845;Parent=Msa1081560-mRNA-1
chr7_2	exon	81344770	81345029	81344770	ID=Msa1081560-mRNA-1:exon:20844;Parent=Msa1081560-mRNA-1
chr7_2	five_prime_UTR	81344942	81345029	81344942	ID=Msa1081560-mRNA-1:five_prime_utr;Parent=Msa1081560-mRNA-1
chr7_2	CDS	81344770	81344941	81344770	ID=Msa1081560-mRNA-1:cds;Parent=Msa1081560-mRNA-1
chr7_2	CDS	81342687	81342796	81342687	ID=Msa1081560-mRNA-1:cds;Parent=Msa1081560-mRNA-1
chr7_2	CDS	81342091	81342387	81342091	ID=Msa1081560-mRNA-1:cds;Parent=Msa1081560-mRNA-1
chr7_2	three_prime_UTR	81341951	81342090	81341951	ID=Msa1081560-mRNA-1:three_prime_utr;Parent=Msa1081560-mRNA-1

Gene Sequence

>Msa1081560

ATGACGAAAAATAATGATGAACGCAACGATAATCATGAAGATAAGCAGAAACAATTGACGATGAAGAAGAATAAAAGGAGGAACGTTTCGAGGTTAGGTGGAAGTGGCCTTTCACTTAATGCTTTCGCTAATGCCAAATCCAATAACAGTGGATACAATCCATCTCTCATAAAGAAGCAGAGGGAGATATACAACAATGCTAAGAAAGTGAAGAAGTATAAGAAGATGCTAAAGCAGCAAAACCAGCAGAATGATCCCTCAGTCTCCCAAAGACATATTGAGAATTTGAATGAAACTGAAGAGGACAAGGATAAGAATGAGAGGAGGAGAAGGAAGAAGGATAGTGCTTTTAGTTTGGAAGAACTATACAAGAAGCAGCATGAAGAAAAAGAGAAAGAAAGAATGGAGAGGGAAGCAGTATTCAAGGAAAAGAAGGAACAGAGAGAAAAAGCTGAAGCTCGCAGAAAAACTTTACGGGAAAAAATGTTTAAGAAGACACGAAAAGGACAACCTATTATGAAATACAGAATTGAACATCTTTTGGAGACTATCCAAGGCTCAGCTAGCAACAAATCCTGA

Protein sequence

>Msa1081560

MTKNNDERNDNHEDKQKQLTMKKNKRRNVSRLGGSGLSLNAFANAKSNNSGYNPSLIKKQREIYNNAKKVKKYKKMLKQQNQQNDPSVSQRHIENLNETEEDKDKNERRRRKKDSAFSLEELYKKQHEEKEKERMEREAVFKEKKEQREKAEARRKTLREKMFKKTRKGQPIMKYRIEHLLETIQGSASNKS*