AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1081560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1081560 MtrunA17_Chr7g0268661 95.312 192 9 0 1 192 1 192 2.50e-113 320
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1081560 AT4G03180.1 51.872 187 71 4 9 189 7 180 7.36e-44 144
Msa1081560 AT4G03180.2 48.571 140 56 2 55 189 7 135 3.06e-25 95.9

Find 46 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATTCAGATGAAAATAAA+TGG 0.194245 7_2:+81342025 None:intergenic
TCAATTCTGTATTTCATAAT+AGG 0.220883 7_2:+81342137 None:intergenic
ATACAGAATTGAACATCTTT+TGG 0.235696 7_2:-81342126 Msa1081560:CDS
GTATCCACTGTTATTGGATT+TGG 0.245614 7_2:+81344786 None:intergenic
TGGATTGTATCCACTGTTAT+TGG 0.269806 7_2:+81344780 None:intergenic
ATCAAACCTCAATATGTCTT+TGG 0.273402 7_2:+81342680 None:intergenic
TGACGATGAAGAAGAATAAA+AGG 0.287215 7_2:-81344864 Msa1081560:CDS
GTAATGACCGGTATAAATTA+AGG 0.324259 7_2:+81341945 None:intergenic
AGCTTTGGTCTCTGTAGATT+AGG 0.329486 7_2:-81345006 Msa1081560:five_prime_UTR
GCTTTGGTCTCTGTAGATTA+GGG 0.331830 7_2:-81345005 Msa1081560:five_prime_UTR
TCTTCACGAGGCACCAGCTT+TGG 0.379564 7_2:-81345021 None:intergenic
AGGAGGAACGTTTCGAGGTT+AGG 0.383195 7_2:-81344844 Msa1081560:CDS
CAAATCCTGATTAGTGGACT+AGG 0.387821 7_2:-81342078 Msa1081560:exon
ATGTTGATGTTATCTGCATT+TGG 0.396332 7_2:+81342049 None:intergenic
TCTTCCCTAGTCCACTAATC+AGG 0.411099 7_2:+81342073 None:intergenic
TCAAACCTCAATATGTCTTT+GGG 0.414773 7_2:+81342681 None:intergenic
ACTTTCTTAATTATTGTCAA+TGG 0.420017 7_2:-81341985 Msa1081560:three_prime_UTR
TGAGAGGAGGAGAAGGAAGA+AGG 0.463593 7_2:-81342330 Msa1081560:CDS
ATTTGTTGCTAGCTGAGCCT+TGG 0.469979 7_2:+81342096 None:intergenic
GGAGAGGGAAGCAGTATTCA+AGG 0.482087 7_2:-81342243 Msa1081560:CDS
TAGCAACAAATCCTGATTAG+TGG 0.483204 7_2:-81342084 Msa1081560:exon
AGACTGAGGGATCATTCTGC+TGG 0.487070 7_2:+81342704 None:intergenic
ATAAGAATGAGAGGAGGAGA+AGG 0.495494 7_2:-81342337 Msa1081560:CDS
AAATTCAGATGAAAATAAAT+GGG 0.495648 7_2:+81342026 None:intergenic
AACGAGGTTCAGAGCAATTG+AGG 0.500409 7_2:+81344958 None:intergenic
AGTCTCCCAAAGACATATTG+AGG 0.501893 7_2:-81342686 Msa1081560:intron
ATAAAAGGAGGAACGTTTCG+AGG 0.510507 7_2:-81344849 Msa1081560:CDS
AGCAGTATTCAAGGAAAAGA+AGG 0.516229 7_2:-81342234 Msa1081560:CDS
GTTTCGAGGTTAGGTGGAAG+TGG 0.520904 7_2:-81344835 Msa1081560:CDS
ATGTTTAAGAAGACACGAAA+AGG 0.525206 7_2:-81342164 Msa1081560:CDS
AATTGCATACTTATGAGAGA+TGG 0.531431 7_2:+81344760 None:intergenic
AGAGAAAGAAAGAATGGAGA+GGG 0.531612 7_2:-81342258 Msa1081560:CDS
AGGACAAGGATAAGAATGAG+AGG 0.570238 7_2:-81342346 Msa1081560:CDS
TAGCGAAAGCATTAAGTGAA+AGG 0.574586 7_2:+81344812 None:intergenic
AAATCCTGATTAGTGGACTA+GGG 0.577402 7_2:-81342077 Msa1081560:exon
AGGAACGTTTCGAGGTTAGG+TGG 0.588198 7_2:-81344841 Msa1081560:CDS
GAATTTGAATGAAACTGAAG+AGG 0.591461 7_2:-81342366 Msa1081560:CDS
ACAAGGATAAGAATGAGAGG+AGG 0.593062 7_2:-81342343 Msa1081560:CDS
AAGAGAAAGAAAGAATGGAG+AGG 0.596634 7_2:-81342259 Msa1081560:CDS
GAATGAAACTGAAGAGGACA+AGG 0.598466 7_2:-81342360 Msa1081560:CDS
ATATGTCTTTGGGAGACTGA+GGG 0.609227 7_2:+81342691 None:intergenic
TAATCTACAGAGACCAAAGC+TGG 0.612837 7_2:+81345008 None:intergenic
AATATGTCTTTGGGAGACTG+AGG 0.627209 7_2:+81342690 None:intergenic
AATGCCAAATCCAATAACAG+TGG 0.654269 7_2:-81344790 Msa1081560:CDS
CGATGAAGAAGAATAAAAGG+AGG 0.667747 7_2:-81344861 Msa1081560:CDS
TGTTGGAAGATTAATTAACG+AGG 0.700815 7_2:+81344942 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAATAATCAAAATAATA+TGG + chr7_2:81342362-81342381 None:intergenic 10.0%
!! TAATATATTTAAAAACATGA+TGG + chr7_2:81342477-81342496 None:intergenic 10.0%
!! TTAAATATATTATAAGCAAT+TGG - chr7_2:81342485-81342504 Msa1081560:intron 10.0%
!!! TTTTGTAAATGTATATTTTT+AGG - chr7_2:81342656-81342675 Msa1081560:intron 10.0%
!!! ATTTCTTTTTTTTAAAAAGA+AGG + chr7_2:81343734-81343753 None:intergenic 10.0%
!!! TATTTTGATTATTTTTGTGA+TGG - chr7_2:81342365-81342384 Msa1081560:CDS 15.0%
!! AACAATTTGATGAATAATTT+GGG + chr7_2:81342597-81342616 None:intergenic 15.0%
!! TAACAATTTGATGAATAATT+TGG + chr7_2:81342598-81342617 None:intergenic 15.0%
!!! TTTAAAACTACTAAGATTAT+TGG - chr7_2:81342690-81342709 Msa1081560:CDS 15.0%
!!! TTTTTTTTAAAAAGAAGGAA+GGG + chr7_2:81343729-81343748 None:intergenic 15.0%
!!! ATTATCTTCATTGAATATTT+TGG - chr7_2:81343832-81343851 Msa1081560:intron 15.0%
!! AAATTCAGATGAAAATAAAT+GGG + chr7_2:81344935-81344954 None:intergenic 15.0%
!! AAAATTCAGATGAAAATAAA+TGG + chr7_2:81344936-81344955 None:intergenic 15.0%
!! GAAAAAAAAAATACTTCTCA+CGG + chr7_2:81343268-81343287 None:intergenic 20.0%
!!! TGGTGCTTTTTAATTTAAAA+TGG + chr7_2:81343303-81343322 None:intergenic 20.0%
!! ATGAACCTTTAAATGAATTA+GGG - chr7_2:81343486-81343505 Msa1081560:intron 20.0%
!! TTTAGATGATTATTTGGTTA+TGG - chr7_2:81343601-81343620 Msa1081560:intron 20.0%
!!! CTTTTTTTTAAAAAGAAGGA+AGG + chr7_2:81343730-81343749 None:intergenic 20.0%
!! TAAAAAAAAGAAATCCAATG+AGG - chr7_2:81343740-81343759 Msa1081560:intron 20.0%
!! ACAAAAAAACTTCTTTCATT+TGG - chr7_2:81343915-81343934 Msa1081560:intron 20.0%
!! TAATGTTCGAAAATCTTAAA+TGG + chr7_2:81344023-81344042 None:intergenic 20.0%
!!! CATCACTTTTAATATGATTT+GGG - chr7_2:81344063-81344082 Msa1081560:intron 20.0%
!!! ATCACTTTTAATATGATTTG+GGG - chr7_2:81344064-81344083 Msa1081560:intron 20.0%
!! GACATATTAAAATATAGCAA+CGG + chr7_2:81344123-81344142 None:intergenic 20.0%
!! TAGTAATAATAACAATCTCA+AGG + chr7_2:81344321-81344340 None:intergenic 20.0%
!!! TTGTTATTATTACTATCTAC+AGG - chr7_2:81344326-81344345 Msa1081560:intron 20.0%
!!! TTTTATTTCAATGTTTGAGA+AGG - chr7_2:81344447-81344466 Msa1081560:intron 20.0%
!! TCAATTCTGTATTTCATAAT+AGG + chr7_2:81344824-81344843 None:intergenic 20.0%
!! ACTTTCTTAATTATTGTCAA+TGG - chr7_2:81344973-81344992 Msa1081560:five_prime_UTR 20.0%
!!! TTTTGAACCTTAATTTATAC+CGG - chr7_2:81345006-81345025 Msa1081560:five_prime_UTR 20.0%
!!! TCATTATTTTTCGTCATTGT+TGG + chr7_2:81342036-81342055 None:intergenic 25.0%
!! TCAGCATCTTTCATAATTTT+TGG - chr7_2:81342232-81342251 Msa1081560:CDS 25.0%
! TGATGAATAATTTGGGAAAA+AGG + chr7_2:81342590-81342609 None:intergenic 25.0%
!! ATTATTGGTCTAAATGTGAA+GGG - chr7_2:81342705-81342724 Msa1081560:CDS 25.0%
! GTTCTATTATAATTCATACC+TGG - chr7_2:81343003-81343022 Msa1081560:intron 25.0%
! AAAGAAAAAAGAATGGAAGT+AGG - chr7_2:81343149-81343168 Msa1081560:intron 25.0%
! TAACATTAAGCTACATAGTT+TGG - chr7_2:81343222-81343241 Msa1081560:intron 25.0%
! CATGAACCTTTAAATGAATT+AGG - chr7_2:81343485-81343504 Msa1081560:intron 25.0%
! AAGAACCCTAATTCATTTAA+AGG + chr7_2:81343494-81343513 None:intergenic 25.0%
!! CTTTGGTAAAGTTTTACTAT+TGG - chr7_2:81343778-81343797 Msa1081560:intron 25.0%
!!! ATTTTGAAAAAAACAACGCA+AGG + chr7_2:81343877-81343896 None:intergenic 25.0%
! TCTTCAGAACAAATTACAAT+TGG + chr7_2:81343947-81343966 None:intergenic 25.0%
! ATGGTATATATTCAGAATCA+GGG + chr7_2:81344046-81344065 None:intergenic 25.0%
! CCAAATCATATTAAAAGTGA+TGG + chr7_2:81344065-81344084 None:intergenic 25.0%
!!! CCATCACTTTTAATATGATT+TGG - chr7_2:81344062-81344081 Msa1081560:intron 25.0%
!!! GCTATATTTTAATATGTCAG+TGG - chr7_2:81344125-81344144 Msa1081560:intron 25.0%
! AATTTGAATCCCATAAATAG+CGG + chr7_2:81344403-81344422 None:intergenic 25.0%
!! AAATTTCTCTTTTATGACAC+AGG + chr7_2:81344429-81344448 None:intergenic 25.0%
! AGTAAACATCAATCAATGTT+AGG + chr7_2:81344530-81344549 None:intergenic 25.0%
! AGAAAAAGAGAAAGAAAGAA+TGG - chr7_2:81344694-81344713 Msa1081560:intron 25.0%
!! ATACAGAATTGAACATCTTT+TGG - chr7_2:81344832-81344851 Msa1081560:CDS 25.0%
TGTTGGAAGATTAATTAACG+AGG + chr7_2:81342019-81342038 None:intergenic 30.0%
TGACGATGAAGAAGAATAAA+AGG - chr7_2:81342094-81342113 Msa1081560:CDS 30.0%
AATTGCATACTTATGAGAGA+TGG + chr7_2:81342201-81342220 None:intergenic 30.0%
TATTGCTGCAATTTAATGCT+TGG - chr7_2:81342316-81342335 Msa1081560:CDS 30.0%
ATTGCTGCAATTTAATGCTT+GGG - chr7_2:81342317-81342336 Msa1081560:CDS 30.0%
!!! GATTATTTTTGTGATGGATG+AGG - chr7_2:81342371-81342390 Msa1081560:intron 30.0%
! CTTTTCTTCTGCTCATATTT+GGG + chr7_2:81342420-81342439 None:intergenic 30.0%
GTAAAAAAGATTGCCCAAAA+AGG + chr7_2:81342563-81342582 None:intergenic 30.0%
! GATTATTGGTCTAAATGTGA+AGG - chr7_2:81342704-81342723 Msa1081560:CDS 30.0%
TTTAGGTACATTAACCATGT+CGG + chr7_2:81342780-81342799 None:intergenic 30.0%
! AGCGAAGCATCAATATATTT+AGG + chr7_2:81342797-81342816 None:intergenic 30.0%
AGGACAATAACTATATACCA+TGG + chr7_2:81342844-81342863 None:intergenic 30.0%
CAAAGAAACAAAAGCAGAAA+GGG + chr7_2:81342881-81342900 None:intergenic 30.0%
ACAAAGAAACAAAAGCAGAA+AGG + chr7_2:81342882-81342901 None:intergenic 30.0%
ATTATGCTAAAATCGTAGTG+AGG - chr7_2:81342952-81342971 Msa1081560:intron 30.0%
TTATGCTAAAATCGTAGTGA+GGG - chr7_2:81342953-81342972 Msa1081560:intron 30.0%
TAGAACCTAAATGAGTCTTA+CGG + chr7_2:81342989-81343008 None:intergenic 30.0%
!! CATTTAAAAGCATTCACAAG+TGG - chr7_2:81343026-81343045 Msa1081560:intron 30.0%
GGGATTCAAAGAAAAAAGAA+TGG - chr7_2:81343142-81343161 Msa1081560:intron 30.0%
!! AAATTAAAAAGCACCAAGCA+CGG - chr7_2:81343307-81343326 Msa1081560:intron 30.0%
TTAGTCATAGAAGTTGTCTA+CGG + chr7_2:81343360-81343379 None:intergenic 30.0%
GTGCTCTTTAGATGATTATT+TGG - chr7_2:81343595-81343614 Msa1081560:intron 30.0%
ACTATACTTATTTGCCTCAT+TGG + chr7_2:81343757-81343776 None:intergenic 30.0%
GGCAAATAAGTATAGTACTT+TGG - chr7_2:81343761-81343780 Msa1081560:intron 30.0%
GATGGTATATATTCAGAATC+AGG + chr7_2:81344047-81344066 None:intergenic 30.0%
TCAAACCTCAATATGTCTTT+GGG + chr7_2:81344280-81344299 None:intergenic 30.0%
ATCAAACCTCAATATGTCTT+TGG + chr7_2:81344281-81344300 None:intergenic 30.0%
! TTTTGTGTTACCGCTATTTA+TGG - chr7_2:81344390-81344409 Msa1081560:intron 30.0%
TTTGTGTTACCGCTATTTAT+GGG - chr7_2:81344391-81344410 Msa1081560:intron 30.0%
GAATTTGAATGAAACTGAAG+AGG - chr7_2:81344592-81344611 Msa1081560:intron 30.0%
ATGTTTAAGAAGACACGAAA+AGG - chr7_2:81344794-81344813 Msa1081560:CDS 30.0%
ATGTTGATGTTATCTGCATT+TGG + chr7_2:81344912-81344931 None:intergenic 30.0%
CGATGAAGAAGAATAAAAGG+AGG - chr7_2:81342097-81342116 Msa1081560:CDS 35.0%
!! TAGCGAAAGCATTAAGTGAA+AGG + chr7_2:81342149-81342168 None:intergenic 35.0%
AATGCCAAATCCAATAACAG+TGG - chr7_2:81342168-81342187 Msa1081560:CDS 35.0%
GTATCCACTGTTATTGGATT+TGG + chr7_2:81342175-81342194 None:intergenic 35.0%
TGGATTGTATCCACTGTTAT+TGG + chr7_2:81342181-81342200 None:intergenic 35.0%
GCTCATATTTGGGTATGTAA+TGG + chr7_2:81342410-81342429 None:intergenic 35.0%
! GCTTTTCTTCTGCTCATATT+TGG + chr7_2:81342421-81342440 None:intergenic 35.0%
AATATGAGCAGAAGAAAAGC+TGG - chr7_2:81342421-81342440 Msa1081560:intron 35.0%
ATATGAGCAGAAGAAAAGCT+GGG - chr7_2:81342422-81342441 Msa1081560:intron 35.0%
CCAAAAAGGTGGAATGTTAA+GGG + chr7_2:81342549-81342568 None:intergenic 35.0%
! CCTTAACATTCCACCTTTTT+GGG - chr7_2:81342547-81342566 Msa1081560:intron 35.0%
AAAAAGATTGCCCAAAAAGG+TGG + chr7_2:81342560-81342579 None:intergenic 35.0%
ACATTAACCATGTCGGATTT+GGG + chr7_2:81342773-81342792 None:intergenic 35.0%
TACATTAACCATGTCGGATT+TGG + chr7_2:81342774-81342793 None:intergenic 35.0%
!! GTTGGTAATTCTAGTTTCCA+TGG - chr7_2:81342824-81342843 Msa1081560:intron 35.0%
! TTTGTTTCTTTGTCCAACGT+CGG - chr7_2:81342889-81342908 Msa1081560:intron 35.0%
! ATTGTTGCTTCGGCAAATTA+GGG - chr7_2:81342917-81342936 Msa1081560:intron 35.0%
TATGCTAAAATCGTAGTGAG+GGG - chr7_2:81342954-81342973 Msa1081560:intron 35.0%
! TGTGAATGCTTTTAAATGCC+AGG + chr7_2:81343024-81343043 None:intergenic 35.0%
TGGTCAAGTCTCTATTTCAA+AGG - chr7_2:81343105-81343124 Msa1081560:intron 35.0%
AGTCTCTATTTCAAAGGAGA+AGG - chr7_2:81343111-81343130 Msa1081560:intron 35.0%
! TTAATATTTTCCTCCTTGCG+AGG - chr7_2:81343461-81343480 Msa1081560:intron 35.0%
GTTTGTGTTAATCATGTCTG+TGG - chr7_2:81343532-81343551 Msa1081560:intron 35.0%
TCCTGATGATTTAGCTACTT+TGG - chr7_2:81343570-81343589 Msa1081560:intron 35.0%
! CCTGATGATTTAGCTACTTT+GGG - chr7_2:81343571-81343590 Msa1081560:intron 35.0%
! CTGATGATTTAGCTACTTTG+GGG - chr7_2:81343572-81343591 Msa1081560:intron 35.0%
! TGATGATTTAGCTACTTTGG+GGG - chr7_2:81343573-81343592 Msa1081560:intron 35.0%
AAATCTTAAATGGTCGTGAG+AGG + chr7_2:81344013-81344032 None:intergenic 35.0%
AACGGAACTTCAGTTAGATA+TGG + chr7_2:81344105-81344124 None:intergenic 35.0%
!!! TTTCTTTTTCAGAGAAGCAG+AGG - chr7_2:81344172-81344191 Msa1081560:intron 35.0%
!!! TTCTTTTTCAGAGAAGCAGA+GGG - chr7_2:81344173-81344192 Msa1081560:intron 35.0%
ATCAGCATATCTGACGTATT+AGG + chr7_2:81344362-81344381 None:intergenic 35.0%
!! GAAGGATAGTGCTTTTAGTT+TGG - chr7_2:81344646-81344665 Msa1081560:intron 35.0%
AAGAGAAAGAAAGAATGGAG+AGG - chr7_2:81344699-81344718 Msa1081560:intron 35.0%
AGAGAAAGAAAGAATGGAGA+GGG - chr7_2:81344700-81344719 Msa1081560:intron 35.0%
AGCAGTATTCAAGGAAAAGA+AGG - chr7_2:81344724-81344743 Msa1081560:intron 35.0%
AAGCTCGCAGAAAAACTTTA+CGG - chr7_2:81344765-81344784 Msa1081560:intron 35.0%
TAGCAACAAATCCTGATTAG+TGG - chr7_2:81344874-81344893 Msa1081560:CDS 35.0%
!! AAATCCTGATTAGTGGACTA+GGG - chr7_2:81344881-81344900 Msa1081560:CDS 35.0%
! AGCTTTGGTCTCTGTAGATT+AGG - chr7_2:81341952-81341971 Msa1081560:three_prime_UTR 40.0%
GCTTTGGTCTCTGTAGATTA+GGG - chr7_2:81341953-81341972 Msa1081560:three_prime_UTR 40.0%
ATAAAAGGAGGAACGTTTCG+AGG - chr7_2:81342109-81342128 Msa1081560:CDS 40.0%
CTGCAATTTAATGCTTGGGT+TGG - chr7_2:81342321-81342340 Msa1081560:CDS 40.0%
CAGAAGAAAAGCTGGGATAT+TGG - chr7_2:81342429-81342448 Msa1081560:intron 40.0%
AGCTGGGATATTGGATAGAA+TGG - chr7_2:81342438-81342457 Msa1081560:intron 40.0%
AAAGGTGGAATGTTAAGGGA+CGG + chr7_2:81342545-81342564 None:intergenic 40.0%
! CCCTTAACATTCCACCTTTT+TGG - chr7_2:81342546-81342565 Msa1081560:intron 40.0%
CCCAAAAAGGTGGAATGTTA+AGG + chr7_2:81342550-81342569 None:intergenic 40.0%
GAAGGGAGTCTAACAAGATA+CGG - chr7_2:81342722-81342741 Msa1081560:CDS 40.0%
ATACGGTAACACTCTTAGTG+TGG - chr7_2:81342739-81342758 Msa1081560:CDS 40.0%
! GTCGGTATTCATTGTTGCTT+CGG - chr7_2:81342907-81342926 Msa1081560:intron 40.0%
! CATTGTTGCTTCGGCAAATT+AGG - chr7_2:81342916-81342935 Msa1081560:intron 40.0%
TCAAAGGAGAAGGTAGATGT+TGG - chr7_2:81343121-81343140 Msa1081560:intron 40.0%
CAAAGGAGAAGGTAGATGTT+GGG - chr7_2:81343122-81343141 Msa1081560:intron 40.0%
AAAGAATGGAAGTAGGCCAT+AGG - chr7_2:81343156-81343175 Msa1081560:intron 40.0%
AACATGCTTCATGCTTCCTA+TGG + chr7_2:81343175-81343194 None:intergenic 40.0%
GATAAATACAGCGAATTCGC+TGG + chr7_2:81343388-81343407 None:intergenic 40.0%
GGGTTCTTCTTTCCTTAGAT+TGG - chr7_2:81343506-81343525 Msa1081560:intron 40.0%
AACACAAACTCGCCAATCTA+AGG + chr7_2:81343521-81343540 None:intergenic 40.0%
CCCAAAGTAGCTAAATCATC+AGG + chr7_2:81343574-81343593 None:intergenic 40.0%
TATTTGGTTATGGAGCAGTC+TGG - chr7_2:81343611-81343630 Msa1081560:intron 40.0%
AAGCAACGACTCTATGACAA+AGG + chr7_2:81343639-81343658 None:intergenic 40.0%
TTACACGGAAACAACACTAG+GGG + chr7_2:81343684-81343703 None:intergenic 40.0%
GTTACACGGAAACAACACTA+GGG + chr7_2:81343685-81343704 None:intergenic 40.0%
AGTTACACGGAAACAACACT+AGG + chr7_2:81343686-81343705 None:intergenic 40.0%
!!! TCCGTGTAACTTTGTTTTCC+TGG - chr7_2:81343695-81343714 Msa1081560:intron 40.0%
CCCAGGAAAACAAAGTTACA+CGG + chr7_2:81343699-81343718 None:intergenic 40.0%
!!! CCGTGTAACTTTGTTTTCCT+GGG - chr7_2:81343696-81343715 Msa1081560:intron 40.0%
AAATCACGTGAGCTAACTAG+AGG + chr7_2:81343811-81343830 None:intergenic 40.0%
! TATGATTTGGGGTGAGAATG+TGG - chr7_2:81344075-81344094 Msa1081560:intron 40.0%
GGAACTTCAGTTAGATATGG+CGG + chr7_2:81344102-81344121 None:intergenic 40.0%
! ATATGTCTTTGGGAGACTGA+GGG + chr7_2:81344270-81344289 None:intergenic 40.0%
! AATATGTCTTTGGGAGACTG+AGG + chr7_2:81344271-81344290 None:intergenic 40.0%
AGTCTCCCAAAGACATATTG+AGG - chr7_2:81344272-81344291 Msa1081560:intron 40.0%
GCATATCTGACGTATTAGGT+AGG + chr7_2:81344358-81344377 None:intergenic 40.0%
TCAGAGAGATCAACATTCTG+AGG + chr7_2:81344496-81344515 None:intergenic 40.0%
TCAGAATGTTGATCTCTCTG+AGG - chr7_2:81344495-81344514 Msa1081560:intron 40.0%
GAATGAAACTGAAGAGGACA+AGG - chr7_2:81344598-81344617 Msa1081560:intron 40.0%
AGGACAAGGATAAGAATGAG+AGG - chr7_2:81344612-81344631 Msa1081560:intron 40.0%
ACAAGGATAAGAATGAGAGG+AGG - chr7_2:81344615-81344634 Msa1081560:intron 40.0%
ATAAGAATGAGAGGAGGAGA+AGG - chr7_2:81344621-81344640 Msa1081560:intron 40.0%
AGCTCGCAGAAAAACTTTAC+GGG - chr7_2:81344766-81344785 Msa1081560:intron 40.0%
!! CATCTTTTGGAGACTATCCA+AGG - chr7_2:81344845-81344864 Msa1081560:CDS 40.0%
!! CAAATCCTGATTAGTGGACT+AGG - chr7_2:81344880-81344899 Msa1081560:CDS 40.0%
AACGAGGTTCAGAGCAATTG+AGG + chr7_2:81342003-81342022 None:intergenic 45.0%
TAGTGAACCCAAATCCGACA+TGG - chr7_2:81342763-81342782 Msa1081560:CDS 45.0%
CAGAAAGGGAGAGAGATGTT+GGG + chr7_2:81342867-81342886 None:intergenic 45.0%
GCAACAATGAATACCGACGT+TGG + chr7_2:81342905-81342924 None:intergenic 45.0%
GCGATCCGTAAGACTCATTT+AGG - chr7_2:81342981-81343000 Msa1081560:intron 45.0%
!! CTGATTTGTTGCTGCATGGT+AGG + chr7_2:81343080-81343099 None:intergenic 45.0%
ACCATGCAGCAACAAATCAG+TGG - chr7_2:81343080-81343099 Msa1081560:intron 45.0%
!! ACCACTGATTTGTTGCTGCA+TGG + chr7_2:81343084-81343103 None:intergenic 45.0%
GCAGCAACAAATCAGTGGTT+TGG - chr7_2:81343085-81343104 Msa1081560:intron 45.0%
!! TTAAAAAGCACCAAGCACGG+TGG - chr7_2:81343310-81343329 Msa1081560:intron 45.0%
TAAAGGTTCATGTCCTCGCA+AGG + chr7_2:81343477-81343496 None:intergenic 45.0%
TGTCTGTGGAGAAGCTAACA+AGG - chr7_2:81343546-81343565 Msa1081560:intron 45.0%
!! AGATCAACATTCTGAGGCTC+AGG + chr7_2:81344490-81344509 None:intergenic 45.0%
! ATTTGTTGCTAGCTGAGCCT+TGG + chr7_2:81344865-81344884 None:intergenic 45.0%
TCTTCCCTAGTCCACTAATC+AGG + chr7_2:81344888-81344907 None:intergenic 45.0%
AGGAGGAACGTTTCGAGGTT+AGG - chr7_2:81342114-81342133 Msa1081560:CDS 50.0%
AGGAACGTTTCGAGGTTAGG+TGG - chr7_2:81342117-81342136 Msa1081560:CDS 50.0%
GTTTCGAGGTTAGGTGGAAG+TGG - chr7_2:81342123-81342142 Msa1081560:CDS 50.0%
GATGCTTCGCTAGAGCTTGT+TGG - chr7_2:81342806-81342825 Msa1081560:intron 50.0%
AAAGGGAGAGAGATGTTGGG+AGG + chr7_2:81342864-81342883 None:intergenic 50.0%
GCAGAAAGGGAGAGAGATGT+TGG + chr7_2:81342868-81342887 None:intergenic 50.0%
ACGGCGACGACATTATTACG+TGG + chr7_2:81343341-81343360 None:intergenic 50.0%
GAAGGAAGGGACTAAATCCC+AGG + chr7_2:81343716-81343735 None:intergenic 50.0%
TCAGTGGTGCACACTTGTCA+TGG - chr7_2:81344141-81344160 Msa1081560:intron 50.0%
AGACTGAGGGATCATTCTGC+TGG + chr7_2:81344257-81344276 None:intergenic 50.0%
TGAGAGGAGGAGAAGGAAGA+AGG - chr7_2:81344628-81344647 Msa1081560:intron 50.0%
GGAGAGGGAAGCAGTATTCA+AGG - chr7_2:81344715-81344734 Msa1081560:intron 50.0%
AGGTTCATGTCCTCGCAAGG+AGG + chr7_2:81343474-81343493 None:intergenic 55.0%
ACGTGAGCTAACTAGAGGCG+AGG + chr7_2:81343806-81343825 None:intergenic 55.0%
CGTGGATAGACCACCGTGCT+TGG + chr7_2:81343323-81343342 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 81341951 81345029 81341951 ID=Msa1081560;Name=Msa1081560
chr7_2 mRNA 81341951 81345029 81341951 ID=Msa1081560-mRNA-1;Parent=Msa1081560;Name=Msa1081560-mRNA-1;_AED=0.19;_eAED=0.19;_QI=88|1|1|1|0.5|1|3|140|192
chr7_2 exon 81341951 81342387 81341951 ID=Msa1081560-mRNA-1:exon:20846;Parent=Msa1081560-mRNA-1
chr7_2 exon 81342687 81342796 81342687 ID=Msa1081560-mRNA-1:exon:20845;Parent=Msa1081560-mRNA-1
chr7_2 exon 81344770 81345029 81344770 ID=Msa1081560-mRNA-1:exon:20844;Parent=Msa1081560-mRNA-1
chr7_2 five_prime_UTR 81344942 81345029 81344942 ID=Msa1081560-mRNA-1:five_prime_utr;Parent=Msa1081560-mRNA-1
chr7_2 CDS 81344770 81344941 81344770 ID=Msa1081560-mRNA-1:cds;Parent=Msa1081560-mRNA-1
chr7_2 CDS 81342687 81342796 81342687 ID=Msa1081560-mRNA-1:cds;Parent=Msa1081560-mRNA-1
chr7_2 CDS 81342091 81342387 81342091 ID=Msa1081560-mRNA-1:cds;Parent=Msa1081560-mRNA-1
chr7_2 three_prime_UTR 81341951 81342090 81341951 ID=Msa1081560-mRNA-1:three_prime_utr;Parent=Msa1081560-mRNA-1
Gene Sequence

>Msa1081560

ATGACGAAAAATAATGATGAACGCAACGATAATCATGAAGATAAGCAGAAACAATTGACGATGAAGAAGAATAAAAGGAGGAACGTTTCGAGGTTAGGTGGAAGTGGCCTTTCACTTAATGCTTTCGCTAATGCCAAATCCAATAACAGTGGATACAATCCATCTCTCATAAAGAAGCAGAGGGAGATATACAACAATGCTAAGAAAGTGAAGAAGTATAAGAAGATGCTAAAGCAGCAAAACCAGCAGAATGATCCCTCAGTCTCCCAAAGACATATTGAGAATTTGAATGAAACTGAAGAGGACAAGGATAAGAATGAGAGGAGGAGAAGGAAGAAGGATAGTGCTTTTAGTTTGGAAGAACTATACAAGAAGCAGCATGAAGAAAAAGAGAAAGAAAGAATGGAGAGGGAAGCAGTATTCAAGGAAAAGAAGGAACAGAGAGAAAAAGCTGAAGCTCGCAGAAAAACTTTACGGGAAAAAATGTTTAAGAAGACACGAAAAGGACAACCTATTATGAAATACAGAATTGAACATCTTTTGGAGACTATCCAAGGCTCAGCTAGCAACAAATCCTGA

Protein sequence

>Msa1081560

MTKNNDERNDNHEDKQKQLTMKKNKRRNVSRLGGSGLSLNAFANAKSNNSGYNPSLIKKQREIYNNAKKVKKYKKMLKQQNQQNDPSVSQRHIENLNETEEDKDKNERRRRKKDSAFSLEELYKKQHEEKEKERMEREAVFKEKKEQREKAEARRKTLREKMFKKTRKGQPIMKYRIEHLLETIQGSASNKS*