AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1433700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1433700 MtrunA17_Chr7g0260601 97.009 702 20 1 1 702 1 701 0.0 1413
Msa1433700 MtrunA17_Chr4g0031821 72.429 700 141 7 2 689 107 766 0.0 984
Msa1433700 MtrunA17_Chr7g0248361 70.546 696 144 9 1 689 1 642 0.0 945
Msa1433700 MtrunA17_Chr6g0476861 70.864 683 140 7 14 689 16 646 0.0 936
Msa1433700 MtrunA17_Chr3g0094871 81.081 444 68 3 241 683 11 439 0.0 728
Msa1433700 MtrunA17_Chr1g0168321 70.968 465 95 2 157 621 83 507 0.0 662
Msa1433700 MtrunA17_Chr1g0168321 50.000 110 39 3 1 107 1 97 3.28e-18 88.6
Msa1433700 MtrunA17_Chr3g0143721 50.000 452 210 6 241 680 249 696 6.56e-147 444
Msa1433700 MtrunA17_Chr2g0297281 48.330 449 217 9 241 680 286 728 2.96e-135 416
Msa1433700 MtrunA17_Chr4g0052411 48.222 450 217 9 241 680 229 672 5.99e-134 410
Msa1433700 MtrunA17_Chr7g0217421 53.022 364 163 6 232 592 30 388 4.05e-126 380
Msa1433700 MtrunA17_Chr5g0429571 43.579 475 247 8 192 651 269 737 7.90e-115 363
Msa1433700 MtrunA17_Chr1g0158881 43.043 460 234 8 238 691 326 763 9.18e-112 355
Msa1433700 MtrunA17_Chr3g0135721 43.274 446 233 8 232 671 215 646 1.29e-110 350
Msa1433700 MtrunA17_Chr3g0104211 48.549 379 186 4 241 611 304 681 3.98e-110 351
Msa1433700 MtrunA17_Chr3g0135761 43.807 436 223 9 243 671 224 644 1.80e-108 344
Msa1433700 MtrunA17_Chr8g0362771 40.347 461 252 8 220 671 214 660 3.61e-107 342
Msa1433700 MtrunA17_Chr5g0432631 41.741 448 240 8 231 671 219 652 2.87e-105 340
Msa1433700 MtrunA17_Chr5g0432641 39.588 437 241 9 243 671 193 614 1.30e-91 298
Msa1433700 MtrunA17_Chr6g0456351 46.178 314 153 4 191 503 277 575 1.23e-83 276
Msa1433700 MtrunA17_Chr2g0331161 38.427 445 254 7 241 680 415 844 4.38e-80 273
Msa1433700 MtrunA17_Chr8g0388371 41.257 366 189 6 236 582 399 757 6.53e-76 262
Msa1433700 MtrunA17_Chr3g0129971 31.652 575 329 17 166 700 198 748 1.01e-66 235
Msa1433700 MtrunA17_Chr4g0050561 40.684 263 141 3 246 501 161 415 8.70e-58 201
Msa1433700 MtrunA17_Chr8g0392981 79.832 119 24 0 563 681 1 119 4.18e-57 189
Msa1433700 MtrunA17_Chr8g0345461 40.520 269 152 4 228 493 152 415 7.65e-57 199
Msa1433700 MtrunA17_Chr8g0392971 85.294 102 15 0 453 554 51 152 4.36e-55 185
Msa1433700 MtrunA17_Chr3g0135781 53.488 172 76 2 232 403 46 213 1.56e-54 186
Msa1433700 MtrunA17_Chr1g0200081 40.149 269 152 5 228 493 162 424 1.79e-54 193
Msa1433700 MtrunA17_Chr1g0182711 42.972 249 134 4 243 488 190 433 1.22e-52 188
Msa1433700 MtrunA17_Chr7g0262801 42.972 249 134 4 243 488 189 432 4.31e-52 187
Msa1433700 MtrunA17_Chr3g0145011 41.129 248 142 3 241 487 139 383 1.08e-51 184
Msa1433700 MtrunA17_Chr1g0192151 39.286 252 145 4 236 484 162 408 2.59e-51 184
Msa1433700 MtrunA17_Chr4g0014731 39.592 245 140 4 243 484 170 409 3.08e-51 184
Msa1433700 MtrunA17_Chr3g0141901 40.726 248 143 3 241 487 136 380 4.30e-51 182
Msa1433700 MtrunA17_Chr8g0357301 30.022 453 266 12 258 668 487 930 7.26e-51 191
Msa1433700 MtrunA17_Chr7g0255721 39.114 271 151 6 240 503 684 947 2.00e-49 186
Msa1433700 MtrunA17_Chr7g0255721 41.206 199 110 4 272 469 416 608 2.79e-30 127
Msa1433700 MtrunA17_Chr2g0327121 42.000 250 135 5 222 469 189 430 4.79e-49 184
Msa1433700 MtrunA17_Chr2g0327121 41.739 230 130 3 241 469 480 706 5.73e-47 178
Msa1433700 MtrunA17_Chr1g0180791 42.609 230 128 3 241 469 478 704 5.05e-49 184
Msa1433700 MtrunA17_Chr1g0180791 39.716 282 143 7 222 484 187 460 3.26e-48 182
Msa1433700 MtrunA17_Chr7g0264521 42.544 228 127 3 243 469 481 705 2.06e-48 182
Msa1433700 MtrunA17_Chr7g0264521 41.365 249 138 5 222 469 188 429 9.13e-47 177
Msa1433700 MtrunA17_Chr7g0255641 37.545 277 159 6 240 509 657 926 5.50e-48 182
Msa1433700 MtrunA17_Chr7g0255641 40.000 195 108 6 279 472 432 618 2.12e-28 122
Msa1433700 MtrunA17_Chr5g0432391 33.154 371 217 10 312 671 72 422 6.39e-47 172
Msa1433700 MtrunA17_Chr7g0255651 40.948 232 131 4 240 469 281 508 1.43e-46 174
Msa1433700 MtrunA17_Chr7g0255651 30.317 221 143 4 254 469 27 241 1.34e-18 90.1
Msa1433700 MtrunA17_Chr3g0108321 45.876 194 99 3 238 428 156 346 2.98e-46 168
Msa1433700 MtrunA17_Chr2g0277831 41.991 231 124 3 243 469 245 469 5.27e-43 166
Msa1433700 MtrunA17_Chr2g0277831 39.474 228 133 2 241 467 533 756 2.52e-42 164
Msa1433700 MtrunA17_Chr7g0255691 39.344 244 139 5 240 479 285 523 5.34e-43 164
Msa1433700 MtrunA17_Chr7g0255691 36.100 241 131 8 246 474 22 251 5.71e-26 112
Msa1433700 MtrunA17_Chr7g0255901 35.498 231 144 4 241 469 639 866 7.52e-39 154
Msa1433700 MtrunA17_Chr2g0321241 41.850 227 118 8 238 460 129 345 8.43e-38 146
Msa1433700 MtrunA17_Chr4g0026631 41.410 227 119 8 238 460 124 340 8.50e-38 146
Msa1433700 MtrunA17_Chr3g0086411 35.165 273 147 6 241 487 215 483 9.33e-37 144
Msa1433700 MtrunA17_Chr3g0086411 35.333 150 80 3 328 467 7 149 7.71e-17 84.0
Msa1433700 MtrunA17_Chr8g0387641 36.638 232 137 5 241 469 521 745 2.79e-36 146
Msa1433700 MtrunA17_Chr4g0038101 37.281 228 132 6 241 464 721 941 2.91e-36 146
Msa1433700 MtrunA17_Chr4g0033451 36.719 256 147 6 241 487 380 629 8.01e-36 145
Msa1433700 MtrunA17_Chr2g0327231 43.827 162 89 2 241 401 346 506 1.86e-35 140
Msa1433700 MtrunA17_Chr2g0327231 36.111 108 65 2 222 329 135 238 1.59e-12 70.5
Msa1433700 MtrunA17_Chr1g0190401 40.000 200 116 3 227 424 663 860 3.05e-35 144
Msa1433700 MtrunA17_Chr4g0004121 38.431 255 132 8 241 482 242 484 4.21e-35 140
Msa1433700 MtrunA17_Chr3g0086401 34.564 298 153 7 241 510 385 668 6.56e-35 141
Msa1433700 MtrunA17_Chr3g0086401 37.339 233 129 6 234 456 84 309 1.25e-32 134
Msa1433700 MtrunA17_Chr4g0043381 34.513 226 141 3 243 467 839 1058 9.78e-35 142
Msa1433700 MtrunA17_Chr6g0462581 37.069 232 135 6 241 469 500 723 2.13e-34 140
Msa1433700 MtrunA17_Chr3g0127401 37.395 238 127 8 241 469 81 305 1.47e-33 132
Msa1433700 MtrunA17_Chr1g0202381 36.245 229 134 6 240 464 467 687 2.01e-33 137
Msa1433700 MtrunA17_Chr1g0202371 36.842 228 131 7 241 464 397 615 2.96e-33 136
Msa1433700 MtrunA17_Chr5g0397121 35.345 232 140 6 241 469 513 737 4.92e-33 136
Msa1433700 MtrunA17_Chr2g0316851 34.766 256 154 6 222 469 573 823 5.80e-33 137
Msa1433700 MtrunA17_Chr3g0127431 35.983 239 129 8 241 469 84 308 6.65e-33 131
Msa1433700 MtrunA17_Chr1g0204031 36.325 234 137 7 240 469 556 781 7.32e-33 135
Msa1433700 MtrunA17_Chr4g0052271 38.528 231 133 7 241 469 119 342 1.14e-32 130
Msa1433700 MtrunA17_Chr1g0195731 36.481 233 137 6 241 469 934 1159 8.34e-32 133
Msa1433700 MtrunA17_Chr3g0135791 32.599 227 145 4 448 671 19 240 1.02e-31 125
Msa1433700 MtrunA17_Chr1g0195741 36.481 233 137 6 241 469 938 1163 1.67e-31 132
Msa1433700 MtrunA17_Chr3g0116131 35.965 228 135 6 241 464 902 1122 1.95e-30 128
Msa1433700 MtrunA17_Chr6g0459561 36.864 236 137 8 233 465 376 602 2.57e-29 124
Msa1433700 MtrunA17_Chr7g0246111 35.146 239 140 7 236 469 207 435 4.51e-29 122
Msa1433700 MtrunA17_Chr4g0047411 37.915 211 116 5 266 464 202 409 1.34e-28 122
Msa1433700 MtrunA17_Chr6g0459541 31.071 280 157 8 216 465 14 287 5.55e-27 112
Msa1433700 MtrunA17_Chr2g0289231 32.083 240 136 7 237 463 293 518 1.06e-22 102
Msa1433700 MtrunA17_Chr6g0459551 36.082 194 104 7 236 423 97 276 1.68e-21 97.8
Msa1433700 MtrunA17_Chr3g0135741 35.714 126 79 2 444 568 13 137 7.99e-17 77.8
Msa1433700 MtrunA17_Chr5g0432671 44.231 104 51 4 444 546 3 100 1.40e-15 73.2
Msa1433700 MtrunA17_Chr6g0459531 26.962 293 165 12 187 465 3 260 1.46e-14 75.5
Msa1433700 MtrunA17_Chr8g0372701 34.010 197 112 9 243 432 224 409 5.58e-13 72.0
Msa1433700 MtrunA17_Chr4g0062081 42.308 78 43 2 244 319 10 87 5.58e-13 65.5
Msa1433700 MtrunA17_Chr2g0315911 29.843 191 121 5 243 428 206 388 5.98e-13 71.6
Msa1433700 MtrunA17_Chr2g0315971 30.994 171 106 5 262 428 217 379 2.20e-12 70.5
Msa1433700 MtrunA17_Chr5g0404651 32.474 194 112 8 243 428 216 398 9.51e-12 68.2
Msa1433700 MtrunA17_Chr2g0315991 27.749 191 125 5 243 428 199 381 1.56e-11 67.4
Msa1433700 MtrunA17_Chr6g0452361 32.121 165 97 6 253 410 6 162 6.46e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1433700 AT1G07510.1 73.556 658 135 4 46 690 140 771 0.0 964
Msa1433700 AT2G29080.1 69.900 701 160 6 7 689 99 766 0.0 945
Msa1433700 AT1G50250.1 49.558 452 212 6 241 680 259 706 1.65e-145 441
Msa1433700 AT5G42270.1 49.779 452 211 6 241 680 247 694 1.34e-144 439
Msa1433700 AT5G15250.1 48.626 473 226 11 218 680 199 664 8.18e-137 418
Msa1433700 AT2G30950.4 48.998 449 214 9 241 680 228 670 3.04e-135 414
Msa1433700 AT2G30950.1 48.998 449 214 9 241 680 224 666 3.86e-135 414
Msa1433700 AT2G30950.2 48.998 449 214 9 241 680 224 666 3.86e-135 414
Msa1433700 AT2G30950.3 48.998 449 214 9 241 680 224 666 3.86e-135 414
Msa1433700 AT1G06430.1 48.775 449 215 9 241 680 217 659 1.34e-134 412
Msa1433700 AT1G06430.3 48.775 449 215 9 241 680 217 659 1.34e-134 412
Msa1433700 AT1G06430.2 48.775 449 215 9 241 680 217 659 1.34e-134 412
Msa1433700 AT5G53170.1 44.843 446 226 6 238 680 356 784 1.17e-116 369
Msa1433700 AT2G26140.1 44.907 432 224 6 243 671 226 646 1.21e-116 367
Msa1433700 AT5G58870.1 48.662 411 195 6 241 638 326 733 1.09e-113 361
Msa1433700 AT3G47060.1 47.017 419 209 6 226 633 308 724 3.25e-113 360
Msa1433700 AT5G15250.2 50.779 321 130 5 218 515 199 514 1.67e-99 315
Msa1433700 AT3G02450.1 46.057 317 153 4 184 494 276 580 3.54e-83 276
Msa1433700 AT4G23940.1 41.689 367 192 5 236 585 422 783 1.87e-76 265
Msa1433700 AT3G16290.1 36.364 451 255 9 241 680 407 836 2.57e-75 260
Msa1433700 AT5G64580.1 43.421 304 164 4 224 520 296 598 3.15e-64 229
Msa1433700 AT5G19990.2 40.377 265 143 3 246 503 105 361 1.12e-57 200
Msa1433700 AT5G19990.1 40.684 263 141 3 246 501 163 417 3.25e-57 200
Msa1433700 AT5G19990.3 40.684 263 141 3 246 501 163 417 3.25e-57 200
Msa1433700 AT5G20000.1 40.684 263 141 3 246 501 163 417 4.89e-57 200
Msa1433700 AT1G53750.1 40.520 269 152 4 228 493 152 415 1.46e-56 199
Msa1433700 AT1G53780.1 39.326 267 158 3 228 493 324 587 1.89e-54 197
Msa1433700 AT1G53780.4 39.326 267 158 3 228 493 324 587 1.89e-54 197
Msa1433700 AT1G53780.3 39.326 267 158 3 228 493 323 586 2.07e-54 197
Msa1433700 AT1G53780.2 39.326 267 158 3 228 493 345 608 2.38e-54 197
Msa1433700 AT1G79560.1 28.433 517 305 16 237 701 486 989 1.35e-52 197
Msa1433700 AT4G29040.1 42.570 249 135 4 243 488 187 430 3.08e-52 187
Msa1433700 AT2G20140.1 42.570 249 135 4 243 488 187 430 6.16e-52 186
Msa1433700 AT1G79560.3 31.311 412 242 11 237 616 486 888 9.40e-52 194
Msa1433700 AT1G79560.2 31.311 412 242 11 237 616 486 888 9.49e-52 194
Msa1433700 AT3G05530.1 39.286 252 145 4 236 484 163 409 2.57e-51 184
Msa1433700 AT5G43010.1 40.323 248 144 3 241 487 136 380 2.82e-51 183
Msa1433700 AT1G45000.1 40.323 248 144 3 241 487 136 380 4.39e-51 183
Msa1433700 AT3G56690.1 40.551 254 138 5 240 487 720 966 8.69e-51 191
Msa1433700 AT3G56690.1 42.714 199 107 4 272 469 413 605 2.59e-37 150
Msa1433700 AT5G58290.1 41.200 250 133 5 238 481 149 390 1.19e-50 182
Msa1433700 AT1G09100.1 38.095 252 148 4 236 484 162 408 1.85e-49 179
Msa1433700 AT3G53230.1 41.739 230 130 3 241 469 478 704 1.42e-47 181
Msa1433700 AT3G53230.1 38.078 281 149 6 222 484 187 460 2.09e-46 177
Msa1433700 AT5G03340.1 40.870 230 132 3 241 469 477 703 3.26e-47 179
Msa1433700 AT5G03340.1 39.700 267 149 6 222 484 186 444 6.05e-47 179
Msa1433700 AT3G09840.1 39.700 267 149 6 222 484 186 444 6.99e-47 178
Msa1433700 AT3G09840.1 40.000 230 135 2 241 469 477 704 2.57e-44 171
Msa1433700 AT2G03670.1 36.032 247 153 3 240 483 282 526 4.73e-40 156
Msa1433700 AT2G03670.1 34.940 249 145 7 245 483 23 264 3.15e-30 127
Msa1433700 AT3G01610.2 40.517 232 115 6 243 460 232 454 8.97e-40 157
Msa1433700 AT3G01610.2 35.897 273 151 7 241 496 525 790 5.04e-34 139
Msa1433700 AT3G01610.1 40.517 232 115 6 243 460 232 454 9.74e-40 157
Msa1433700 AT3G01610.1 35.897 273 151 7 241 496 525 790 5.01e-34 139
Msa1433700 AT1G03000.1 35.776 232 142 5 241 469 655 882 1.80e-37 150
Msa1433700 AT1G05910.1 35.985 264 156 5 241 497 378 635 4.93e-37 149
Msa1433700 AT1G64110.1 37.500 232 135 6 241 469 513 737 1.82e-36 147
Msa1433700 AT1G64110.5 37.500 232 135 5 241 469 516 740 1.96e-36 147
Msa1433700 AT1G64110.3 37.500 232 135 5 241 469 516 740 1.96e-36 147
Msa1433700 AT1G64110.2 37.500 232 135 5 241 469 518 742 2.04e-36 147
Msa1433700 AT1G64110.4 37.500 232 135 5 241 469 518 742 2.04e-36 147
Msa1433700 AT2G27600.1 39.474 228 122 9 238 460 126 342 3.10e-35 139
Msa1433700 AT3G04340.1 39.801 201 117 3 227 425 767 965 4.35e-35 144
Msa1433700 AT1G80350.1 37.838 259 136 8 236 481 231 477 7.57e-35 139
Msa1433700 AT4G28000.3 35.776 232 138 5 241 469 517 740 1.87e-34 140
Msa1433700 AT4G28000.1 35.776 232 138 5 241 469 515 738 2.47e-34 140
Msa1433700 AT4G28000.2 35.776 232 138 5 241 469 517 740 2.81e-34 140
Msa1433700 AT5G08470.1 36.052 233 128 5 243 467 843 1062 2.87e-34 141
Msa1433700 AT5G08470.3 36.052 233 128 5 243 467 834 1053 2.92e-34 140
Msa1433700 AT3G15120.2 39.224 232 128 6 243 467 728 953 4.21e-34 140
Msa1433700 AT3G15120.1 39.224 232 128 6 243 467 718 943 4.39e-34 140
Msa1433700 AT5G52882.1 36.638 232 136 5 241 469 514 737 5.02e-34 139
Msa1433700 AT1G50140.2 37.281 228 132 6 241 464 689 909 1.06e-33 139
Msa1433700 AT1G50140.5 37.281 228 132 6 241 464 689 909 1.06e-33 139
Msa1433700 AT1G50140.3 37.281 228 132 6 241 464 711 931 1.24e-33 139
Msa1433700 AT1G50140.1 37.281 228 132 6 241 464 711 931 1.24e-33 139
Msa1433700 AT1G50140.4 37.281 228 132 6 241 464 711 931 1.24e-33 139
Msa1433700 AT4G02480.1 31.457 302 170 7 241 512 960 1254 7.09e-33 137
Msa1433700 AT5G53540.1 36.864 236 131 8 241 469 84 308 1.22e-32 131
Msa1433700 AT3G19740.1 36.842 228 133 6 241 464 701 921 2.92e-32 134
Msa1433700 AT4G27680.1 37.712 236 129 8 241 469 81 305 2.24e-31 127
Msa1433700 AT2G45500.4 34.137 249 141 8 236 475 75 309 2.33e-31 126
Msa1433700 AT2G45500.3 34.137 249 141 8 236 475 75 309 2.33e-31 126
Msa1433700 AT2G34560.1 38.362 232 133 8 241 469 100 324 2.86e-31 126
Msa1433700 AT2G34560.2 38.362 232 133 8 241 469 109 333 3.24e-31 126
Msa1433700 AT2G03670.2 34.940 249 145 7 245 483 23 264 8.42e-31 126
Msa1433700 AT2G03670.2 36.429 140 88 1 240 378 282 421 2.41e-18 88.6
Msa1433700 AT1G02890.1 30.132 302 174 7 241 512 941 1235 1.18e-30 129
Msa1433700 AT2G45500.2 34.137 249 141 8 236 475 208 442 1.29e-30 126
Msa1433700 AT2G45500.1 34.137 249 141 8 236 475 212 446 1.58e-30 126
Msa1433700 AT2G45500.5 34.137 249 141 8 236 475 218 452 1.72e-30 126
Msa1433700 AT4G24860.1 35.965 228 135 6 241 464 817 1037 2.67e-30 128
Msa1433700 AT4G24860.3 35.965 228 135 6 241 464 815 1035 3.18e-30 128
Msa1433700 AT4G24860.4 35.965 228 135 6 241 464 790 1010 3.78e-30 128
Msa1433700 AT4G24860.2 35.965 228 135 6 241 464 813 1033 3.99e-30 128
Msa1433700 AT3G27120.1 35.391 243 141 7 229 465 388 620 2.19e-28 121
Msa1433700 AT4G04910.1 38.498 213 110 6 266 463 239 445 5.65e-28 120
Msa1433700 AT4G04180.2 30.952 252 149 8 222 463 296 532 7.37e-26 113
Msa1433700 AT4G04180.1 30.952 252 149 8 222 463 301 537 9.44e-26 113
Msa1433700 AT1G62130.1 33.333 231 125 7 241 464 750 958 3.37e-25 112
Msa1433700 AT1G62130.2 33.333 231 125 7 241 464 743 951 3.72e-25 112
Msa1433700 AT1G45000.2 40.288 139 81 2 241 378 136 273 4.74e-23 101
Msa1433700 AT1G02890.2 26.159 302 158 8 241 512 941 1207 6.01e-19 92.4
Msa1433700 AT5G08470.2 34.211 152 89 3 243 390 843 987 1.30e-18 91.3
Msa1433700 AT3G50930.1 33.696 184 93 8 243 410 264 434 3.39e-12 70.1
Msa1433700 AT3G28610.1 28.467 274 153 12 243 497 202 451 5.26e-12 69.3
Msa1433700 AT5G40000.1 26.966 267 163 9 243 496 206 453 1.12e-11 68.2

Find 203 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAAATATTATTTCAATAT+TGG 0.141331 tig0027402:-41051 Msa1433700:CDS
TTCAAATAAGTCATATATTA+TGG 0.151888 tig0027402:+39213 None:intergenic
TAGAGTGAGAAACTTGTTTA+AGG 0.174086 tig0027402:-40383 Msa1433700:CDS
GTTACCTATTCTTCTGAAAT+TGG 0.199385 tig0027402:-40952 Msa1433700:CDS
GCAGCAGCAGATTAGCTTTC+AGG 0.211301 tig0027402:-41310 Msa1433700:CDS
TTGGAATTCTTCTCAAATAT+TGG 0.229345 tig0027402:-39068 Msa1433700:three_prime_UTR
CCAAGCTCTTGGTATTTCTT+AGG 0.233058 tig0027402:+40556 None:intergenic
ATAAATATTATTTCAATATT+GGG 0.236143 tig0027402:-41050 Msa1433700:CDS
ATATTATTCTTCTCAAATAT+TGG 0.237904 tig0027402:-39132 Msa1433700:three_prime_UTR
TGCTGTTGCAGGTTGGTTCT+TGG 0.252343 tig0027402:-39813 Msa1433700:CDS
TTTGGCATTTCTCATCTATA+TGG 0.257662 tig0027402:-40887 Msa1433700:CDS
CAGGTTTATCAATTGTTATT+TGG 0.261861 tig0027402:+40128 None:intergenic
GAGAGTTCAAAACATATATC+TGG 0.273733 tig0027402:+41220 None:intergenic
TTCCTTCACTTCATAAATTC+AGG 0.281074 tig0027402:-42607 Msa1433700:intron
AGATGACTTGCTTCCAATCT+TGG 0.281284 tig0027402:-39333 Msa1433700:CDS
ACCTCAGGCTCTATCATAAT+TGG 0.281315 tig0027402:+39281 None:intergenic
ACCCTTCCTGCGAAGGGATA+TGG 0.294128 tig0027402:-41081 Msa1433700:CDS
GGAGTTTATGAATAAGCTTT+TGG 0.304203 tig0027402:-41289 Msa1433700:CDS
TGAGGCAAAACAAGAAATTA+TGG 0.336127 tig0027402:-40602 Msa1433700:CDS
GCTCTTCTGGTGGGTCCTCC+AGG 0.336675 tig0027402:-40514 Msa1433700:CDS
AATTCCAAAAGGTGCTCTTC+TGG 0.340894 tig0027402:-40527 Msa1433700:CDS
TGGTGGTCGGGCTGCCGAGC+AGG 0.341124 tig0027402:-39657 Msa1433700:CDS
TCCCTTACTCCAGGATTTGC+TGG 0.341796 tig0027402:-40016 Msa1433700:CDS
TGATAGGATCATTGGTGGTT+TGG 0.342606 tig0027402:-39900 Msa1433700:CDS
GCCGGTGGTAAGGGTCCTTT+TGG 0.346091 tig0027402:-40862 Msa1433700:CDS
CCTCGCGGATCATCGGCTCT+TGG 0.353189 tig0027402:-39755 Msa1433700:CDS
GATTTCTTAGAACTGTTTGT+TGG 0.356042 tig0027402:-40418 Msa1433700:CDS
CATTCAACACCTGTTGCCTT+TGG 0.359012 tig0027402:-40905 Msa1433700:CDS
ATTTGTTTGAGGAAACAGTA+TGG 0.369018 tig0027402:-41520 Msa1433700:exon
AAATGCTCTACTAAACATTT+AGG 0.370536 tig0027402:+39030 None:intergenic
AACAGTGATGCAAGATTGAT+TGG 0.371102 tig0027402:+41550 None:intergenic
GGTTCTCATTCGGAACATAC+TGG 0.373559 tig0027402:+39726 None:intergenic
TAGAGCATTTGAATTGGAAT+TGG 0.373744 tig0027402:-39017 None:intergenic
CTCGCGGATCATCGGCTCTT+GGG 0.376272 tig0027402:-39754 Msa1433700:CDS
TCGCCATCGCCGCCGACAAT+GGG 0.376809 tig0027402:+41388 None:intergenic
GATGACTTGCTTCCAATCTT+GGG 0.377308 tig0027402:-39332 Msa1433700:CDS
CAACAGCATGACCTGCTTCA+TGG 0.377810 tig0027402:+39828 None:intergenic
AAAGCAACTGCAGGGGAATC+TGG 0.378044 tig0027402:-40469 Msa1433700:CDS
CTATATGGTTGCCGGTGGTA+AGG 0.395182 tig0027402:-40872 Msa1433700:CDS
GTTTAGTAGAGCATTTGAAT+TGG 0.395638 tig0027402:-39023 Msa1433700:three_prime_UTR
TTTCTCATCTATATGGTTGC+CGG 0.396422 tig0027402:-40880 Msa1433700:CDS
CACCCCATTGTCGGCGGCGA+TGG 0.397410 tig0027402:-41391 Msa1433700:CDS
TCAAGTAAATCTGAAATATC+TGG 0.398278 tig0027402:+40089 None:intergenic
TTAGAACTGTTTGTTGGTGT+TGG 0.399000 tig0027402:-40412 Msa1433700:CDS
ATTTCGAGGCAGCTATTGAT+AGG 0.405057 tig0027402:-39916 Msa1433700:CDS
AAAAGGGTCTTCCCTGTGCC+TGG 0.405205 tig0027402:+40496 None:intergenic
CTGGTGGGTCCTCCAGGCAC+AGG 0.412352 tig0027402:-40508 Msa1433700:CDS
TTGTATGACCCTTGGTGGTC+GGG 0.412979 tig0027402:-39669 Msa1433700:CDS
GTTTAGTAGAGCATTTGAAT+TGG 0.413524 tig0027402:-39087 Msa1433700:three_prime_UTR
CCCACCAGAAGAGCACCTTT+TGG 0.413587 tig0027402:+40523 None:intergenic
TTCTGAAATTGGCTGGCACC+TGG 0.417740 tig0027402:-40941 Msa1433700:CDS
TATGCTCAAGTAGCCGTCTA+TGG 0.420332 tig0027402:-39572 Msa1433700:CDS
ATTTCAGAAGAATAGGTAAC+AGG 0.420734 tig0027402:+40955 None:intergenic
CGCCTCGCCGTCGCCGTCAC+CGG 0.429111 tig0027402:+42762 None:intergenic
GAAGCAGGTCATGCTGTTGC+AGG 0.430567 tig0027402:-39824 Msa1433700:CDS
ATTGATGAAATTGATGCAAT+TGG 0.431450 tig0027402:-40328 Msa1433700:CDS
GTCATATATTATGGGATGAA+TGG 0.434709 tig0027402:+39222 None:intergenic
GATGGCTTTGGAACCACTGC+TGG 0.435918 tig0027402:-40226 Msa1433700:CDS
TATTTCAGATTTACTTGAAA+GGG 0.438357 tig0027402:-40084 Msa1433700:CDS
TGGTCACGACCTTTGATGTC+AGG 0.443122 tig0027402:+40109 None:intergenic
TGGTGATTCAGTACTCTTGA+AGG 0.444257 tig0027402:+39301 None:intergenic
CCAGCCAATTTCAGAAGAAT+AGG 0.446134 tig0027402:+40948 None:intergenic
AAACCATACAGCAACAAAAC+TGG 0.446545 tig0027402:-39488 Msa1433700:CDS
CCTATTCTTCTGAAATTGGC+TGG 0.447841 tig0027402:-40948 Msa1433700:CDS
GTGCCATTTCTCTCAATATC+CGG 0.449729 tig0027402:-40445 Msa1433700:CDS
CAATAGTTACTTTCAACAAT+GGG 0.453504 tig0027402:+39780 None:intergenic
GAACCGGATATTGAGAGAAA+TGG 0.454858 tig0027402:+40442 None:intergenic
AAGTACTTTAAATCAATTGT+TGG 0.458092 tig0027402:-40257 Msa1433700:CDS
TCAAATAAGTCATATATTAT+GGG 0.459122 tig0027402:+39214 None:intergenic
GTCATGAGAAGGTTCTCATT+CGG 0.459278 tig0027402:+39716 None:intergenic
CTCCAGCAAATCCTGGAGTA+AGG 0.460210 tig0027402:+40014 None:intergenic
AAGGGTCGCACACCCAAGAT+TGG 0.464532 tig0027402:+39320 None:intergenic
TATTGTTCCTCGCGGATCAT+CGG 0.464947 tig0027402:-39762 Msa1433700:CDS
TGAGAAATGCCAAAGGCAAC+AGG 0.465291 tig0027402:+40896 None:intergenic
AGGGCTTTGTCTAATACATC+AGG 0.465840 tig0027402:+40175 None:intergenic
AAATCAATTGTTGGTGGAGA+TGG 0.466589 tig0027402:-40248 Msa1433700:CDS
TCGCTCACGCGTCGCCGCAC+CGG 0.473168 tig0027402:+42717 None:intergenic
ATCGCCATCGCCGCCGACAA+TGG 0.473751 tig0027402:+41387 None:intergenic
TTGGTGGAGATGGATGGCTT+TGG 0.474835 tig0027402:-40238 Msa1433700:CDS
CCGATGTTAAAGACTCCAAA+AGG 0.480457 tig0027402:+40847 None:intergenic
GTTTATCAATTGTTATTTGG+CGG 0.482713 tig0027402:+40131 None:intergenic
AAATGCTCTACTAAACGTTT+AGG 0.483932 tig0027402:+39094 None:intergenic
GCTGCCGAGCAGGTTCTCAT+TGG 0.485652 tig0027402:-39647 Msa1433700:CDS
AGAATTTCGCACCCCATTGT+CGG 0.486791 tig0027402:-41400 Msa1433700:CDS
CACTGCTGGAGTTGTTGTGC+TGG 0.487338 tig0027402:-40212 Msa1433700:CDS
ATATCCGCTCCAGCAAATCC+TGG 0.487859 tig0027402:+40007 None:intergenic
TACTTGAGCATATGTCATCT+TGG 0.491081 tig0027402:+39583 None:intergenic
GCAGCTATTGATAGGATCAT+TGG 0.491525 tig0027402:-39908 Msa1433700:CDS
TCATCAATAAATACTATACT+AGG 0.493104 tig0027402:+40343 None:intergenic
TATATGGTTGCCGGTGGTAA+GGG 0.494089 tig0027402:-40871 Msa1433700:CDS
CTTGTATGACCCTTGGTGGT+CGG 0.495286 tig0027402:-39670 Msa1433700:CDS
CTCATTGGAACAATCTCTAC+AGG 0.497010 tig0027402:-39632 Msa1433700:CDS
CAAAACGCCCTGGTCTAAGT+AGG 0.497564 tig0027402:+40155 None:intergenic
GCTGGAGTTGTTGTGCTGGC+AGG 0.497655 tig0027402:-40208 Msa1433700:CDS
TTGATAATGAAGTGCGAGAA+TGG 0.499292 tig0027402:-39457 Msa1433700:CDS
ACTGAGGTTAGAGAGGAGTA+AGG 0.499321 tig0027402:+42787 None:intergenic
TTGATGCAATTGGTCGGGCA+AGG 0.500453 tig0027402:-40318 Msa1433700:CDS
AGAGAGAGCTCAAATAGCAC+TGG 0.502174 tig0027402:-41001 Msa1433700:CDS
GATAGGACTTGTATGACCCT+TGG 0.505375 tig0027402:-39677 Msa1433700:CDS
TCCTCTCTAACCTCAGTCTC+CGG 0.510242 tig0027402:-42781 Msa1433700:five_prime_UTR
TTTGTTTGAGGAAACAGTAT+GGG 0.515714 tig0027402:-41519 Msa1433700:exon
GTTGTTCCTTTGTCATGAGA+AGG 0.516090 tig0027402:+39705 None:intergenic
TACAGGAGCACAAGATGACT+TGG 0.518130 tig0027402:-39615 Msa1433700:CDS
CAGTTCTAAGAAATCAGAAC+CGG 0.518886 tig0027402:+40426 None:intergenic
TCCAAAAGGTGCTCTTCTGG+TGG 0.519532 tig0027402:-40524 Msa1433700:CDS
ACAATATGATCTACCAATCC+TGG 0.522222 tig0027402:+41264 None:intergenic
AGATTGGAAGCAAGTCATCT+TGG 0.522810 tig0027402:+39336 None:intergenic
CAACTATGTGGAACAACCTC+AGG 0.525515 tig0027402:+39266 None:intergenic
TACTTTAAATCAATTGTTGG+TGG 0.526387 tig0027402:-40254 Msa1433700:CDS
CACCATATCCCTTCGCAGGA+AGG 0.526594 tig0027402:+41079 None:intergenic
AAGCTTGCATCCCTTACTCC+AGG 0.530533 tig0027402:-40025 Msa1433700:CDS
TTGTCTACTTTAGTAAAATG+TGG 0.531413 tig0027402:+40820 None:intergenic
AGAGTTCAAAACATATATCT+GGG 0.532045 tig0027402:+41221 None:intergenic
TGATGCAATTGGTCGGGCAA+GGG 0.533289 tig0027402:-40317 Msa1433700:CDS
ACAATAGTTACTTTCAACAA+TGG 0.533587 tig0027402:+39779 None:intergenic
TGGTGGGTCCTCCAGGCACA+GGG 0.536261 tig0027402:-40507 Msa1433700:CDS
TGAAGTGAAGGAAATCAAGA+AGG 0.536432 tig0027402:+42617 None:intergenic
CTCGGCAGCCCGACCACCAA+GGG 0.536999 tig0027402:+39661 None:intergenic
TGAAATTGATGCAATTGGTC+GGG 0.538277 tig0027402:-40323 Msa1433700:CDS
CTTAAACATACTCAACTATG+TGG 0.539986 tig0027402:+39254 None:intergenic
CGTCACACATGATCATTTCG+AGG 0.540747 tig0027402:-39930 Msa1433700:CDS
ACCATATCCCTTCGCAGGAA+GGG 0.541666 tig0027402:+41080 None:intergenic
TGCCCACCATATCCCTTCGC+AGG 0.542347 tig0027402:+41075 None:intergenic
ATATTTCAGATTTACTTGAA+AGG 0.542997 tig0027402:-40085 Msa1433700:CDS
CAGGTCATGCTGTTGCAGGT+TGG 0.548618 tig0027402:-39820 Msa1433700:CDS
TTCGTTTCTGTTTGATTACG+AGG 0.548639 tig0027402:+41171 None:intergenic
TTCGTTTCTGTTTGATTACG+AGG 0.548639 tig0027402:+41198 None:intergenic
CTTGGTGCCAAAATTCCAAA+AGG 0.552017 tig0027402:-40538 Msa1433700:CDS
AACCTGAATTTATGAAGTGA+AGG 0.552716 tig0027402:+42605 None:intergenic
AGAAGAAACCCTTCCTGCGA+AGG 0.555125 tig0027402:-41088 Msa1433700:CDS
GAAACTTGTTTAAGGAAGCA+AGG 0.555548 tig0027402:-40375 Msa1433700:CDS
CCTAAGAAATACCAAGAGCT+TGG 0.555551 tig0027402:-40556 Msa1433700:CDS
GTTCTCATTCGGAACATACT+GGG 0.557136 tig0027402:+39727 None:intergenic
TTCGTATCTGTTTGATTACG+AGG 0.557306 tig0027402:+41144 None:intergenic
CTCCGGTGACGGCGACGGCG+AGG 0.557585 tig0027402:-42764 Msa1433700:five_prime_UTR
AGCTTACGTGAATAATATGA+AGG 0.560744 tig0027402:+40043 None:intergenic
ACCGTTGCTTACCATGAAGC+AGG 0.562002 tig0027402:-39839 Msa1433700:CDS
GGTATTTCTTAGGACTCTTG+AGG 0.566392 tig0027402:+40566 None:intergenic
GATGCAATTGGTCGGGCAAG+GGG 0.566686 tig0027402:-40316 Msa1433700:CDS
GCTATTGATAGGATCATTGG+TGG 0.567101 tig0027402:-39905 Msa1433700:CDS
ATTTGGCGGTCAAAACGCCC+TGG 0.570824 tig0027402:+40145 None:intergenic
ATGAAATTGATGCAATTGGT+CGG 0.570840 tig0027402:-40324 Msa1433700:CDS
GAAGAAACCCTTCCTGCGAA+GGG 0.573228 tig0027402:-41087 Msa1433700:CDS
GATGGCGATGATACTGATGA+TGG 0.573875 tig0027402:-41373 Msa1433700:CDS
TCAGTCTCCGGTGACGGCGA+CGG 0.575849 tig0027402:-42769 Msa1433700:five_prime_UTR
GCTCGGCAGCCCGACCACCA+AGG 0.576079 tig0027402:+39660 None:intergenic
AAGTCAAACACAGAAGATGA+AGG 0.576484 tig0027402:-41460 Msa1433700:CDS
TCCAGCAAATCCTGGAGTAA+GGG 0.577389 tig0027402:+40015 None:intergenic
TCTGTTGTCGCGACTGAGAG+AGG 0.577419 tig0027402:+42690 None:intergenic
GAAGCTTATAGAGAAAGAGA+AGG 0.580722 tig0027402:-39408 Msa1433700:CDS
CAAACACAGAAGATGAAGGA+AGG 0.581136 tig0027402:-41456 Msa1433700:CDS
CCAAAAGGTGCTCTTCTGGT+GGG 0.582841 tig0027402:-40523 Msa1433700:CDS
CGCCATCGCCGCCGACAATG+GGG 0.584073 tig0027402:+41389 None:intergenic
AAAACGCCCTGGTCTAAGTA+GGG 0.589323 tig0027402:+40156 None:intergenic
ATTGATAAACCTGACATCAA+AGG 0.590486 tig0027402:-40118 Msa1433700:CDS
GAATGAATGTCAAGAACTCC+AGG 0.593301 tig0027402:+40923 None:intergenic
GACAAAGCCCTACTTAGACC+AGG 0.594683 tig0027402:-40163 Msa1433700:CDS
ACCAATTATGATAGAGCCTG+AGG 0.595840 tig0027402:-39282 Msa1433700:CDS
ACCGGAGACTGAGGTTAGAG+AGG 0.596652 tig0027402:+42780 None:intergenic
TGATAATGAAGTGCGAGAAT+GGG 0.597932 tig0027402:-39456 Msa1433700:CDS
CTCATCTATATGGTTGCCGG+TGG 0.598370 tig0027402:-40877 Msa1433700:CDS
CGGGCAAGGGGTAGTAGAGG+CGG 0.598922 tig0027402:-40304 Msa1433700:CDS
GGTGATTCAGTACTCTTGAA+GGG 0.599010 tig0027402:+39302 None:intergenic
ACGACATCGCACAGTCTCAC+CGG 0.600088 tig0027402:-42736 Msa1433700:five_prime_UTR
CTTCCTGCGAAGGGATATGG+TGG 0.605558 tig0027402:-41078 Msa1433700:CDS
TCTGTTTCTGTTTGATTACG+AGG 0.607446 tig0027402:+41117 None:intergenic
TACTCCAGGATTTGCTGGAG+CGG 0.607722 tig0027402:-40011 Msa1433700:CDS
TTCTGCAGTATCAAGAACAA+TGG 0.609024 tig0027402:+41580 None:intergenic
CTAACCTCAGTCTCCGGTGA+CGG 0.609048 tig0027402:-42775 Msa1433700:five_prime_UTR
ACCTGCTTCATGGTAAGCAA+CGG 0.609319 tig0027402:+39838 None:intergenic
ATGGCGATGATACTGATGAT+GGG 0.613407 tig0027402:-41372 Msa1433700:CDS
ATTTCGCACCCCATTGTCGG+CGG 0.615024 tig0027402:-41397 Msa1433700:CDS
ACAGTGATGCAAGATTGATT+GGG 0.615868 tig0027402:+41551 None:intergenic
TAACAGGTACAAAATCATGA+TGG 0.616641 tig0027402:+40971 None:intergenic
GGTCGGGCAAGGGGTAGTAG+AGG 0.619478 tig0027402:-40307 Msa1433700:CDS
AGGACTTGTATGACCCTTGG+TGG 0.619993 tig0027402:-39674 Msa1433700:CDS
GAAGTGAAGGAAATCAAGAA+GGG 0.620928 tig0027402:+42618 None:intergenic
TGTTCCAATGAGAACCTGCT+CGG 0.621791 tig0027402:+39643 None:intergenic
GTCGCCGTCACCGGAGACTG+AGG 0.629614 tig0027402:+42771 None:intergenic
CAGCACAACAACTCCAGCAG+TGG 0.631517 tig0027402:+40213 None:intergenic
TCCAAAAGGACCCTTACCAC+CGG 0.633292 tig0027402:+40861 None:intergenic
ACAAAGCCCTACTTAGACCA+GGG 0.635104 tig0027402:-40162 Msa1433700:CDS
GTGAATAATATGAAGGCTCG+TGG 0.635461 tig0027402:+40050 None:intergenic
AAGCTGCTCTGATTGCTGCA+AGG 0.638573 tig0027402:-39967 Msa1433700:CDS
TGAGAACCTTCTCATGACAA+AGG 0.638697 tig0027402:-39711 Msa1433700:CDS
CAATTGTTGGTGGAGATGGA+TGG 0.642273 tig0027402:-40244 Msa1433700:CDS
GGTGAGACTGTGCGATGTCG+TGG 0.642413 tig0027402:+42738 None:intergenic
TAATGAAGTGCGAGAATGGG+TGG 0.649940 tig0027402:-39453 Msa1433700:CDS
GGAGAAAGTAGCTCAACTTG+CGG 0.651792 tig0027402:-39387 Msa1433700:CDS
GAGAGAGCTCAAATAGCACT+GGG 0.653868 tig0027402:-41000 Msa1433700:CDS
CAGTATCAAGAACAATGGAG+TGG 0.659087 tig0027402:+41585 None:intergenic
TTTAGCAAAAGCAACTGCAG+GGG 0.659558 tig0027402:-40476 Msa1433700:CDS
TGGTTTGGAGAAGAAGAACA+AGG 0.659827 tig0027402:-39885 Msa1433700:CDS
AAAGTAACTATTGTTCCTCG+CGG 0.664079 tig0027402:-39770 Msa1433700:CDS
AGGGTCTTCCCTGTGCCTGG+AGG 0.665486 tig0027402:+40499 None:intergenic
CGTAATCAAACAGAAACAGA+CGG 0.675072 tig0027402:-41114 Msa1433700:CDS
ATCGCACAGTCTCACCGGTG+CGG 0.681767 tig0027402:-42731 Msa1433700:five_prime_UTR
AGATGTTGCTGGCTGTGATG+AGG 0.687105 tig0027402:-40620 Msa1433700:CDS
TGGCGATGATACTGATGATG+GGG 0.688912 tig0027402:-41371 Msa1433700:CDS
ATATAGATGAGAAATGCCAA+AGG 0.694545 tig0027402:+40889 None:intergenic
TTCCTGCGAAGGGATATGGT+GGG 0.714800 tig0027402:-41077 Msa1433700:CDS
TCGCATAGTTTCAGTTCACG+CGG 0.732567 tig0027402:-42812 Msa1433700:five_prime_UTR
CCAAGAGCCGATGATCCGCG+AGG 0.755348 tig0027402:+39755 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATATTGTAGTTAATATTT+TGG - tig0027402:40172-40191 Msa1433700:CDS 10.0%
!!! AATATTGTAGTTAATATTTT+GGG - tig0027402:40173-40192 Msa1433700:CDS 10.0%
!!! TTTATTCTTTTGTAAATAAA+TGG - tig0027402:41062-41081 Msa1433700:CDS 10.0%
!!! TTATATATTTTTCTTAATCT+AGG + tig0027402:42648-42667 None:intergenic 10.0%
!! AAATCTAAGTAAAAGAATTT+AGG + tig0027402:39468-39487 None:intergenic 15.0%
!!! TTTTTTTAAATCACATAAAG+AGG - tig0027402:39496-39515 Msa1433700:CDS 15.0%
!!! TTTTTTAAATCACATAAAGA+GGG - tig0027402:39497-39516 Msa1433700:CDS 15.0%
!!! TTATTTTGAATTCTGTTTAT+TGG - tig0027402:39571-39590 Msa1433700:CDS 15.0%
!! TCAAATAAGTCATATATTAT+GGG + tig0027402:42617-42636 None:intergenic 15.0%
!! TTCAAATAAGTCATATATTA+TGG + tig0027402:42618-42637 None:intergenic 15.0%
!! ATATTATTCTTCTCAAATAT+TGG - tig0027402:42696-42715 Msa1433700:five_prime_UTR 15.0%
!! AAATTGAATCAAACAACATA+GGG + tig0027402:39359-39378 None:intergenic 20.0%
!! AAAATTGAATCAAACAACAT+AGG + tig0027402:39360-39379 None:intergenic 20.0%
!!! ATTCTTTTACTTAGATTTTG+TGG - tig0027402:39470-39489 Msa1433700:CDS 20.0%
!!! TTCTTTTACTTAGATTTTGT+GGG - tig0027402:39471-39490 Msa1433700:CDS 20.0%
!! ATAAAAATCACATTAAGATC+AGG + tig0027402:39544-39563 None:intergenic 20.0%
!!! TTGTTTATGATTTGGTTAAT+TGG - tig0027402:39682-39701 Msa1433700:CDS 20.0%
!! TTGAAATTCTATTTATGACT+TGG - tig0027402:39811-39830 Msa1433700:CDS 20.0%
!!! TGTTCAAAAAAATTTGTTTG+AGG - tig0027402:40297-40316 Msa1433700:CDS 20.0%
!!! TCTATCTTATATTTTGATAC+TGG - tig0027402:40489-40508 Msa1433700:CDS 20.0%
!!! CTATCTTATATTTTGATACT+GGG - tig0027402:40490-40509 Msa1433700:CDS 20.0%
!! TCATCAATAAATACTATACT+AGG + tig0027402:41488-41507 None:intergenic 20.0%
!! AAGTACTTTAAATCAATTGT+TGG - tig0027402:41571-41590 Msa1433700:five_prime_UTR 20.0%
!! ATATTTCAGATTTACTTGAA+AGG - tig0027402:41743-41762 Msa1433700:intron 20.0%
!! TATTTCAGATTTACTTGAAA+GGG - tig0027402:41744-41763 Msa1433700:intron 20.0%
! AACCCTAGAAATCAAAAATT+GGG - tig0027402:39313-39332 Msa1433700:CDS 25.0%
!!! TTTTATCATTGTCGTTTGAT+TGG - tig0027402:39385-39404 Msa1433700:CDS 25.0%
! GAATTTAGGAAAACAATTAG+AGG + tig0027402:39454-39473 None:intergenic 25.0%
!!! GATGATGAATTATGTTTTGA+TGG - tig0027402:39610-39629 Msa1433700:CDS 25.0%
!!! CTGGAATTTTGTTTATGATT+TGG - tig0027402:39674-39693 Msa1433700:CDS 25.0%
! AATAGAATTTCAACTGGATT+TGG + tig0027402:39804-39823 None:intergenic 25.0%
! GTCATAAATAGAATTTCAAC+TGG + tig0027402:39810-39829 None:intergenic 25.0%
!!! CTATTTATGACTTGGTTAAT+TGG - tig0027402:39819-39838 Msa1433700:CDS 25.0%
! AATTGGAAAAGTTTATGACT+TGG - tig0027402:39836-39855 Msa1433700:CDS 25.0%
! GTTAGTTATAGTTTATGACT+TGG - tig0027402:39911-39930 Msa1433700:CDS 25.0%
! TAGCCTAATGTTATTAAAGT+TGG - tig0027402:39955-39974 Msa1433700:CDS 25.0%
! AGTCCAACTTTAATAACATT+AGG + tig0027402:39961-39980 None:intergenic 25.0%
! AGAGTTCAAAACATATATCT+GGG + tig0027402:40610-40629 None:intergenic 25.0%
! TTGTCTACTTTAGTAAAATG+TGG + tig0027402:41011-41030 None:intergenic 25.0%
!!! TGTCTGAATTATTTTTTGTC+AGG - tig0027402:41175-41194 Msa1433700:CDS 25.0%
! ATTGATGAAATTGATGCAAT+TGG - tig0027402:41500-41519 Msa1433700:CDS 25.0%
! TACTTTAAATCAATTGTTGG+TGG - tig0027402:41574-41593 Msa1433700:five_prime_UTR 25.0%
!!! GTTTATCAATTGTTATTTGG+CGG + tig0027402:41700-41719 None:intergenic 25.0%
!! CAGGTTTATCAATTGTTATT+TGG + tig0027402:41703-41722 None:intergenic 25.0%
!! TCAAGTAAATCTGAAATATC+TGG + tig0027402:41742-41761 None:intergenic 25.0%
!! CAATAGTTACTTTCAACAAT+GGG + tig0027402:42051-42070 None:intergenic 25.0%
!! ACAATAGTTACTTTCAACAA+TGG + tig0027402:42052-42071 None:intergenic 25.0%
! TTGGAATTCTTCTCAAATAT+TGG - tig0027402:42760-42779 Msa1433700:five_prime_UTR 25.0%
! AAATGCTCTACTAAACATTT+AGG + tig0027402:42801-42820 None:intergenic 25.0%
TTCCTTCACTTCATAAATTC+AGG - tig0027402:39221-39240 Msa1433700:three_prime_UTR 30.0%
AACCTGAATTTATGAAGTGA+AGG + tig0027402:39226-39245 None:intergenic 30.0%
CACTTGATTCAATTCAATGT+CGG - tig0027402:39266-39285 Msa1433700:CDS 30.0%
GAACCCTAGAAATCAAAAAT+TGG - tig0027402:39312-39331 Msa1433700:CDS 30.0%
ACCCTAGAAATCAAAAATTG+GGG - tig0027402:39314-39333 Msa1433700:CDS 30.0%
! TGATTGGAGATTTTCAATTG+AGG - tig0027402:39401-39420 Msa1433700:CDS 30.0%
! TTGATGGAGAGAAATTTTGT+TGG - tig0027402:39626-39645 Msa1433700:CDS 30.0%
GGAATGAATAGTTTATGACT+TGG - tig0027402:39647-39666 Msa1433700:CDS 30.0%
!! TAGTTTATGACTTGGTTAAC+TGG - tig0027402:39655-39674 Msa1433700:CDS 30.0%
!! GATGATGAATTTTGTTGTAG+TGG - tig0027402:39873-39892 Msa1433700:CDS 30.0%
!! TTTTGTTGTAGTGGCTTAAT+TGG - tig0027402:39882-39901 Msa1433700:CDS 30.0%
!!! GATTTTTTCTATTCTGCAAG+TGG - tig0027402:39996-40015 Msa1433700:CDS 30.0%
!! TAGTTGGTAGCTAGTATATT+TGG - tig0027402:40071-40090 Msa1433700:CDS 30.0%
ATTTGTTTGAGGAAACAGTA+TGG - tig0027402:40308-40327 Msa1433700:CDS 30.0%
TTTGTTTGAGGAAACAGTAT+GGG - tig0027402:40309-40328 Msa1433700:CDS 30.0%
! GGAGTTTATGAATAAGCTTT+TGG - tig0027402:40539-40558 Msa1433700:CDS 30.0%
GAGAGTTCAAAACATATATC+TGG + tig0027402:40611-40630 None:intergenic 30.0%
TAACAGGTACAAAATCATGA+TGG + tig0027402:40860-40879 None:intergenic 30.0%
ATTTCAGAAGAATAGGTAAC+AGG + tig0027402:40876-40895 None:intergenic 30.0%
!! GTTACCTATTCTTCTGAAAT+TGG - tig0027402:40876-40895 Msa1433700:CDS 30.0%
ATATAGATGAGAAATGCCAA+AGG + tig0027402:40942-40961 None:intergenic 30.0%
TTTGGCATTTCTCATCTATA+TGG - tig0027402:40941-40960 Msa1433700:CDS 30.0%
!! ATTTGTATTTTAGGGAGTTG+TGG - tig0027402:41099-41118 Msa1433700:CDS 30.0%
!! GTCTATTTTAAAGATGTTGC+TGG - tig0027402:41197-41216 Msa1433700:CDS 30.0%
TGAGGCAAAACAAGAAATTA+TGG - tig0027402:41226-41245 Msa1433700:CDS 30.0%
GATTTCTTAGAACTGTTTGT+TGG - tig0027402:41410-41429 Msa1433700:CDS 30.0%
! TAGAGTGAGAAACTTGTTTA+AGG - tig0027402:41445-41464 Msa1433700:CDS 30.0%
ATGAAATTGATGCAATTGGT+CGG - tig0027402:41504-41523 Msa1433700:CDS 30.0%
ATTGATAAACCTGACATCAA+AGG - tig0027402:41710-41729 Msa1433700:intron 30.0%
AGCTTACGTGAATAATATGA+AGG + tig0027402:41788-41807 None:intergenic 30.0%
CTTAAACATACTCAACTATG+TGG + tig0027402:42577-42596 None:intergenic 30.0%
GTCATATATTATGGGATGAA+TGG + tig0027402:42609-42628 None:intergenic 30.0%
AAATGCTCTACTAAACGTTT+AGG + tig0027402:42737-42756 None:intergenic 30.0%
! GTTTAGTAGAGCATTTGAAT+TGG - tig0027402:42741-42760 Msa1433700:five_prime_UTR 30.0%
! GTTTAGTAGAGCATTTGAAT+TGG - tig0027402:42741-42760 Msa1433700:five_prime_UTR 30.0%
GAAGTGAAGGAAATCAAGAA+GGG + tig0027402:39213-39232 None:intergenic 35.0%
TGAAGTGAAGGAAATCAAGA+AGG + tig0027402:39214-39233 None:intergenic 35.0%
!!! CCCCCAATTTTTGATTTCTA+GGG + tig0027402:39318-39337 None:intergenic 35.0%
CCCTAGAAATCAAAAATTGG+GGG - tig0027402:39315-39334 Msa1433700:CDS 35.0%
!!! TCCCCCAATTTTTGATTTCT+AGG + tig0027402:39319-39338 None:intergenic 35.0%
CAAACAACATAGGGAATCAA+TGG + tig0027402:39350-39369 None:intergenic 35.0%
TTCACTCGTTGAATTCTGTA+AGG - tig0027402:39726-39745 Msa1433700:CDS 35.0%
! CTGGATTTGGAACAATTCTT+GGG + tig0027402:39791-39810 None:intergenic 35.0%
! ACTGGATTTGGAACAATTCT+TGG + tig0027402:39792-39811 None:intergenic 35.0%
!! TTGGAGCTTTAGATTTGTGT+TGG - tig0027402:40090-40109 Msa1433700:CDS 35.0%
TTCTGCAGTATCAAGAACAA+TGG + tig0027402:40251-40270 None:intergenic 35.0%
ACAGTGATGCAAGATTGATT+GGG + tig0027402:40280-40299 None:intergenic 35.0%
AACAGTGATGCAAGATTGAT+TGG + tig0027402:40281-40300 None:intergenic 35.0%
AAGTCAAACACAGAAGATGA+AGG - tig0027402:40368-40387 Msa1433700:CDS 35.0%
!!! ATGAATAAGCTTTTGGAACC+AGG - tig0027402:40546-40565 Msa1433700:CDS 35.0%
ACAATATGATCTACCAATCC+TGG + tig0027402:40567-40586 None:intergenic 35.0%
! TATCTGGGCAACATTTTTGT+CGG + tig0027402:40595-40614 None:intergenic 35.0%
TTCGTTTCTGTTTGATTACG+AGG + tig0027402:40633-40652 None:intergenic 35.0%
TTCGTTTCTGTTTGATTACG+AGG + tig0027402:40633-40652 None:intergenic 35.0%
TTCGTATCTGTTTGATTACG+AGG + tig0027402:40687-40706 None:intergenic 35.0%
!! TCTGTTTCTGTTTGATTACG+AGG + tig0027402:40714-40733 None:intergenic 35.0%
CGTAATCAAACAGAAACAGA+CGG - tig0027402:40714-40733 Msa1433700:intron 35.0%
!! TGGGAATGTCTTTACTTTTG+AGG - tig0027402:40797-40816 Msa1433700:intron 35.0%
TTTCTCATCTATATGGTTGC+CGG - tig0027402:40948-40967 Msa1433700:CDS 35.0%
!!! CCTTTTGGAGTCTTTAACAT+CGG - tig0027402:40981-41000 Msa1433700:CDS 35.0%
!!! AAGAGCACCTTTTGGAATTT+TGG + tig0027402:41300-41319 None:intergenic 35.0%
!!! TGCAGTTGCTTTTGCTAAAA+GGG + tig0027402:41351-41370 None:intergenic 35.0%
! TTTTAGCAAAAGCAACTGCA+GGG - tig0027402:41351-41370 Msa1433700:CDS 35.0%
!! CAGTTCTAAGAAATCAGAAC+CGG + tig0027402:41405-41424 None:intergenic 35.0%
! TTAGAACTGTTTGTTGGTGT+TGG - tig0027402:41416-41435 Msa1433700:CDS 35.0%
! GAAACTTGTTTAAGGAAGCA+AGG - tig0027402:41453-41472 Msa1433700:CDS 35.0%
TGAAATTGATGCAATTGGTC+GGG - tig0027402:41505-41524 Msa1433700:exon 35.0%
! AAATCAATTGTTGGTGGAGA+TGG - tig0027402:41580-41599 Msa1433700:five_prime_UTR 35.0%
AAAGTAACTATTGTTCCTCG+CGG - tig0027402:42058-42077 Msa1433700:intron 35.0%
! CAAAGGAACAACTTTTCGAT+AGG - tig0027402:42134-42153 Msa1433700:intron 35.0%
TACTTGAGCATATGTCATCT+TGG + tig0027402:42248-42267 None:intergenic 35.0%
! TTTTTCGCTGAAACCATAGA+CGG + tig0027402:42272-42291 None:intergenic 35.0%
TATGGTTTCAGCGAAAAAGT+GGG - tig0027402:42274-42293 Msa1433700:intron 35.0%
AAACCATACAGCAACAAAAC+TGG - tig0027402:42340-42359 Msa1433700:intron 35.0%
!! TTGATAATGAAGTGCGAGAA+TGG - tig0027402:42371-42390 Msa1433700:intron 35.0%
! TGATAATGAAGTGCGAGAAT+GGG - tig0027402:42372-42391 Msa1433700:intron 35.0%
GAAGCTTATAGAGAAAGAGA+AGG - tig0027402:42420-42439 Msa1433700:intron 35.0%
TTGGGCAGACATTATTTACC+CGG + tig0027402:39773-39792 None:intergenic 40.0%
GTAGTGGCTTAATTGGAATG+AGG - tig0027402:39889-39908 Msa1433700:CDS 40.0%
!! TGGCAAGCATTTTAGTAAGC+TGG - tig0027402:40016-40035 Msa1433700:CDS 40.0%
! AAGCTGGTTTCGATTCTCTA+AGG - tig0027402:40032-40051 Msa1433700:CDS 40.0%
!! GATTCTCTAAGGCTAGGATA+GGG - tig0027402:40043-40062 Msa1433700:CDS 40.0%
GATTTGTGTTGGAGTTGTTG+CGG - tig0027402:40101-40120 Msa1433700:CDS 40.0%
CAGTATCAAGAACAATGGAG+TGG + tig0027402:40246-40265 None:intergenic 40.0%
CAAACACAGAAGATGAAGGA+AGG - tig0027402:40372-40391 Msa1433700:CDS 40.0%
ATGGCGATGATACTGATGAT+GGG - tig0027402:40456-40475 Msa1433700:CDS 40.0%
!!! TAAGCTTTTGGAACCAGGAT+TGG - tig0027402:40551-40570 Msa1433700:CDS 40.0%
CCAGCCAATTTCAGAAGAAT+AGG + tig0027402:40883-40902 None:intergenic 40.0%
!! CCTATTCTTCTGAAATTGGC+TGG - tig0027402:40880-40899 Msa1433700:CDS 40.0%
GAATGAATGTCAAGAACTCC+AGG + tig0027402:40908-40927 None:intergenic 40.0%
CCGATGTTAAAGACTCCAAA+AGG + tig0027402:40984-41003 None:intergenic 40.0%
AGACAAAGACGCCAAAAACA+AGG - tig0027402:41025-41044 Msa1433700:CDS 40.0%
!! TATTTTAGGGAGTTGTGGTG+TGG - tig0027402:41104-41123 Msa1433700:CDS 40.0%
GGTATTTCTTAGGACTCTTG+AGG + tig0027402:41265-41284 None:intergenic 40.0%
CCAAGCTCTTGGTATTTCTT+AGG + tig0027402:41275-41294 None:intergenic 40.0%
CCTAAGAAATACCAAGAGCT+TGG - tig0027402:41272-41291 Msa1433700:CDS 40.0%
!! CTTGGTGCCAAAATTCCAAA+AGG - tig0027402:41290-41309 Msa1433700:CDS 40.0%
!! AATTCCAAAAGGTGCTCTTC+TGG - tig0027402:41301-41320 Msa1433700:CDS 40.0%
!!! CTGCAGTTGCTTTTGCTAAA+AGG + tig0027402:41352-41371 None:intergenic 40.0%
! CTTTTAGCAAAAGCAACTGC+AGG - tig0027402:41350-41369 Msa1433700:CDS 40.0%
TTTAGCAAAAGCAACTGCAG+GGG - tig0027402:41352-41371 Msa1433700:CDS 40.0%
!! GTGCCATTTCTCTCAATATC+CGG - tig0027402:41383-41402 Msa1433700:CDS 40.0%
GAACCGGATATTGAGAGAAA+TGG + tig0027402:41389-41408 None:intergenic 40.0%
! AGGGCTTTGTCTAATACATC+AGG + tig0027402:41656-41675 None:intergenic 40.0%
GTGAATAATATGAAGGCTCG+TGG + tig0027402:41781-41800 None:intergenic 40.0%
ATTTCGAGGCAGCTATTGAT+AGG - tig0027402:41912-41931 Msa1433700:intron 40.0%
GCAGCTATTGATAGGATCAT+TGG - tig0027402:41920-41939 Msa1433700:intron 40.0%
GCTATTGATAGGATCATTGG+TGG - tig0027402:41923-41942 Msa1433700:intron 40.0%
! TGATAGGATCATTGGTGGTT+TGG - tig0027402:41928-41947 Msa1433700:intron 40.0%
! TGGTTTGGAGAAGAAGAACA+AGG - tig0027402:41943-41962 Msa1433700:intron 40.0%
GTTCTCATTCGGAACATACT+GGG + tig0027402:42104-42123 None:intergenic 40.0%
GTCATGAGAAGGTTCTCATT+CGG + tig0027402:42115-42134 None:intergenic 40.0%
TGAGAACCTTCTCATGACAA+AGG - tig0027402:42117-42136 Msa1433700:intron 40.0%
GTTGTTCCTTTGTCATGAGA+AGG + tig0027402:42126-42145 None:intergenic 40.0%
CTCATTGGAACAATCTCTAC+AGG - tig0027402:42196-42215 Msa1433700:intron 40.0%
CTATGGTTTCAGCGAAAAAG+TGG - tig0027402:42273-42292 Msa1433700:intron 40.0%
! CTAACGAGTCCTCTTTTTGA+GGG + tig0027402:42312-42331 None:intergenic 40.0%
! TCTAACGAGTCCTCTTTTTG+AGG + tig0027402:42313-42332 None:intergenic 40.0%
AGATTGGAAGCAAGTCATCT+TGG + tig0027402:42495-42514 None:intergenic 40.0%
!! AGATGACTTGCTTCCAATCT+TGG - tig0027402:42495-42514 Msa1433700:intron 40.0%
!! GATGACTTGCTTCCAATCTT+GGG - tig0027402:42496-42515 Msa1433700:intron 40.0%
GGTGATTCAGTACTCTTGAA+GGG + tig0027402:42529-42548 None:intergenic 40.0%
TGGTGATTCAGTACTCTTGA+AGG + tig0027402:42530-42549 None:intergenic 40.0%
ACCAATTATGATAGAGCCTG+AGG - tig0027402:42546-42565 Msa1433700:intron 40.0%
ACCTCAGGCTCTATCATAAT+TGG + tig0027402:42550-42569 None:intergenic 40.0%
ACTGAGGTTAGAGAGGAGTA+AGG + tig0027402:39044-39063 None:intergenic 45.0%
GGGTGAAAACAGCAGAATTG+AGG - tig0027402:39517-39536 Msa1433700:CDS 45.0%
GGCCAAACTCAGGATTAAGA+GGG + tig0027402:39752-39771 None:intergenic 45.0%
CTCTTAATCCTGAGTTTGGC+CGG - tig0027402:39751-39770 Msa1433700:CDS 45.0%
TCTTAATCCTGAGTTTGGCC+GGG - tig0027402:39752-39771 Msa1433700:CDS 45.0%
TTATTTACCCGGCCAAACTC+AGG + tig0027402:39762-39781 None:intergenic 45.0%
!! GGTTTCGATTCTCTAAGGCT+AGG - tig0027402:40037-40056 Msa1433700:CDS 45.0%
!! CGATTCTCTAAGGCTAGGAT+AGG - tig0027402:40042-40061 Msa1433700:CDS 45.0%
CTAGGATAGGGCTATCTAGT+TGG - tig0027402:40055-40074 Msa1433700:CDS 45.0%
GAAGAAAGGGAGATTAGCAG+TGG + tig0027402:40208-40227 None:intergenic 45.0%
CTGTGGAAGGAAGGAAGAAA+GGG + tig0027402:40221-40240 None:intergenic 45.0%
ACTGTGGAAGGAAGGAAGAA+AGG + tig0027402:40222-40241 None:intergenic 45.0%
AGAACAATGGAGTGGAACTG+TGG + tig0027402:40238-40257 None:intergenic 45.0%
AGAATTTCGCACCCCATTGT+CGG - tig0027402:40428-40447 Msa1433700:CDS 45.0%
GATGGCGATGATACTGATGA+TGG - tig0027402:40455-40474 Msa1433700:CDS 45.0%
! TGGCGATGATACTGATGATG+GGG - tig0027402:40457-40476 Msa1433700:CDS 45.0%
AGAGAGAGCTCAAATAGCAC+TGG - tig0027402:40827-40846 Msa1433700:CDS 45.0%
GAGAGAGCTCAAATAGCACT+GGG - tig0027402:40828-40847 Msa1433700:CDS 45.0%
CATTCAACACCTGTTGCCTT+TGG - tig0027402:40923-40942 Msa1433700:CDS 45.0%
TGAGAAATGCCAAAGGCAAC+AGG + tig0027402:40935-40954 None:intergenic 45.0%
TATATGGTTGCCGGTGGTAA+GGG - tig0027402:40957-40976 Msa1433700:CDS 45.0%
ACGCCAAAAACAAGGTTCGT+TGG - tig0027402:41033-41052 Msa1433700:CDS 45.0%
CGCCAAAAACAAGGTTCGTT+GGG - tig0027402:41034-41053 Msa1433700:CDS 45.0%
GCCAAAAACAAGGTTCGTTG+GGG - tig0027402:41035-41054 Msa1433700:CDS 45.0%
!! GAATTTTGGCACCAAGCTCT+TGG + tig0027402:41286-41305 None:intergenic 45.0%
! CAATTGTTGGTGGAGATGGA+TGG - tig0027402:41584-41603 Msa1433700:five_prime_UTR 45.0%
ACAAAGCCCTACTTAGACCA+GGG - tig0027402:41666-41685 Msa1433700:intron 45.0%
AAAACGCCCTGGTCTAAGTA+GGG + tig0027402:41675-41694 None:intergenic 45.0%
TCCAGCAAATCCTGGAGTAA+GGG + tig0027402:41816-41835 None:intergenic 45.0%
CGTCACACATGATCATTTCG+AGG - tig0027402:41898-41917 Msa1433700:intron 45.0%
ACCTGCTTCATGGTAAGCAA+CGG + tig0027402:41993-42012 None:intergenic 45.0%
TATTGTTCCTCGCGGATCAT+CGG - tig0027402:42066-42085 Msa1433700:intron 45.0%
GGTTCTCATTCGGAACATAC+TGG + tig0027402:42105-42124 None:intergenic 45.0%
GATAGGACTTGTATGACCCT+TGG - tig0027402:42151-42170 Msa1433700:intron 45.0%
TGTTCCAATGAGAACCTGCT+CGG + tig0027402:42188-42207 None:intergenic 45.0%
! TACAGGAGCACAAGATGACT+TGG - tig0027402:42213-42232 Msa1433700:intron 45.0%
TATGCTCAAGTAGCCGTCTA+TGG - tig0027402:42256-42275 Msa1433700:intron 45.0%
!! CTTTTTGAGGGAAAGAGAGG+AGG + tig0027402:42300-42319 None:intergenic 45.0%
!! CCTCTTTTTGAGGGAAAGAG+AGG + tig0027402:42303-42322 None:intergenic 45.0%
CCTCTCTTTCCCTCAAAAAG+AGG - tig0027402:42300-42319 Msa1433700:intron 45.0%
!!! GCACCAGTTTTGTTGCTGTA+TGG + tig0027402:42346-42365 None:intergenic 45.0%
TAATGAAGTGCGAGAATGGG+TGG - tig0027402:42375-42394 Msa1433700:intron 45.0%
GGAGAAAGTAGCTCAACTTG+CGG - tig0027402:42441-42460 Msa1433700:intron 45.0%
CAACTATGTGGAACAACCTC+AGG + tig0027402:42565-42584 None:intergenic 45.0%
!! TATAAATATTATTTCAATAT+TGG - tig0027402:40777-40796 Msa1433700:intron 5.0%
!! ATAAATATTATTTCAATATT+GGG - tig0027402:40778-40797 Msa1433700:intron 5.0%
!!! ATTTTTTATATTTGTATTTT+AGG - tig0027402:41090-41109 Msa1433700:CDS 5.0%
!!! TTTTTTATATTTGTATTTTA+GGG - tig0027402:41091-41110 Msa1433700:CDS 5.0%
TCCTCTCTAACCTCAGTCTC+CGG - tig0027402:39047-39066 Msa1433700:three_prime_UTR 50.0%
GGCCCTCTTAATCCTGAGTT+TGG - tig0027402:39747-39766 Msa1433700:CDS 50.0%
CGGCCAAACTCAGGATTAAG+AGG + tig0027402:39753-39772 None:intergenic 50.0%
GAAAGGGAGATTAGCAGTGG+CGG + tig0027402:40205-40224 None:intergenic 50.0%
CAATGGAGTGGAACTGTGGA+AGG + tig0027402:40234-40253 None:intergenic 50.0%
!! GCAGCAGCAGATTAGCTTTC+AGG - tig0027402:40518-40537 Msa1433700:CDS 50.0%
AGAAGAAACCCTTCCTGCGA+AGG - tig0027402:40740-40759 Msa1433700:intron 50.0%
GAAGAAACCCTTCCTGCGAA+GGG - tig0027402:40741-40760 Msa1433700:intron 50.0%
ACCATATCCCTTCGCAGGAA+GGG + tig0027402:40751-40770 None:intergenic 50.0%
TTCCTGCGAAGGGATATGGT+GGG - tig0027402:40751-40770 Msa1433700:intron 50.0%
!! TTCTGAAATTGGCTGGCACC+TGG - tig0027402:40887-40906 Msa1433700:CDS 50.0%
CTCATCTATATGGTTGCCGG+TGG - tig0027402:40951-40970 Msa1433700:CDS 50.0%
CTATATGGTTGCCGGTGGTA+AGG - tig0027402:40956-40975 Msa1433700:CDS 50.0%
TCCAAAAGGACCCTTACCAC+CGG + tig0027402:40970-40989 None:intergenic 50.0%
!!! GCCCCAACGAACCTTGTTTT+TGG + tig0027402:41039-41058 None:intergenic 50.0%
! AGATGTTGCTGGCTGTGATG+AGG - tig0027402:41208-41227 Msa1433700:CDS 50.0%
!! TCCAAAAGGTGCTCTTCTGG+TGG - tig0027402:41304-41323 Msa1433700:CDS 50.0%
!! CCAAAAGGTGCTCTTCTGGT+GGG - tig0027402:41305-41324 Msa1433700:CDS 50.0%
AAAGCAACTGCAGGGGAATC+TGG - tig0027402:41359-41378 Msa1433700:CDS 50.0%
TTGATGCAATTGGTCGGGCA+AGG - tig0027402:41510-41529 Msa1433700:exon 50.0%
TGATGCAATTGGTCGGGCAA+GGG - tig0027402:41511-41530 Msa1433700:exon 50.0%
TTGGTGGAGATGGATGGCTT+TGG - tig0027402:41590-41609 Msa1433700:five_prime_UTR 50.0%
GACAAAGCCCTACTTAGACC+AGG - tig0027402:41665-41684 Msa1433700:intron 50.0%
CAAAACGCCCTGGTCTAAGT+AGG + tig0027402:41676-41695 None:intergenic 50.0%
TGGTCACGACCTTTGATGTC+AGG + tig0027402:41722-41741 None:intergenic 50.0%
AAGCTTGCATCCCTTACTCC+AGG - tig0027402:41803-41822 Msa1433700:intron 50.0%
TCCCTTACTCCAGGATTTGC+TGG - tig0027402:41812-41831 Msa1433700:intron 50.0%
CTCCAGCAAATCCTGGAGTA+AGG + tig0027402:41817-41836 None:intergenic 50.0%
!! TACTCCAGGATTTGCTGGAG+CGG - tig0027402:41817-41836 Msa1433700:intron 50.0%
ATATCCGCTCCAGCAAATCC+TGG + tig0027402:41824-41843 None:intergenic 50.0%
AAGCTGCTCTGATTGCTGCA+AGG - tig0027402:41861-41880 Msa1433700:intron 50.0%
ACCGTTGCTTACCATGAAGC+AGG - tig0027402:41989-42008 Msa1433700:intron 50.0%
CAACAGCATGACCTGCTTCA+TGG + tig0027402:42003-42022 None:intergenic 50.0%
!! TGCTGTTGCAGGTTGGTTCT+TGG - tig0027402:42015-42034 Msa1433700:intron 50.0%
AGGACTTGTATGACCCTTGG+TGG - tig0027402:42154-42173 Msa1433700:intron 50.0%
! CTTGTATGACCCTTGGTGGT+CGG - tig0027402:42158-42177 Msa1433700:intron 50.0%
! TTGTATGACCCTTGGTGGTC+GGG - tig0027402:42159-42178 Msa1433700:intron 50.0%
ACCGGAGACTGAGGTTAGAG+AGG + tig0027402:39051-39070 None:intergenic 55.0%
CTAACCTCAGTCTCCGGTGA+CGG - tig0027402:39053-39072 Msa1433700:three_prime_UTR 55.0%
ACGACATCGCACAGTCTCAC+CGG - tig0027402:39092-39111 Msa1433700:three_prime_UTR 55.0%
TCTGTTGTCGCGACTGAGAG+AGG + tig0027402:39141-39160 None:intergenic 55.0%
GGAGTGGAACTGTGGAAGGA+AGG + tig0027402:40230-40249 None:intergenic 55.0%
ATTTCGCACCCCATTGTCGG+CGG - tig0027402:40431-40450 Msa1433700:CDS 55.0%
ACCCTTCCTGCGAAGGGATA+TGG - tig0027402:40747-40766 Msa1433700:intron 55.0%
CACCATATCCCTTCGCAGGA+AGG + tig0027402:40752-40771 None:intergenic 55.0%
CTTCCTGCGAAGGGATATGG+TGG - tig0027402:40750-40769 Msa1433700:intron 55.0%
!!! CCCACCAGAAGAGCACCTTT+TGG + tig0027402:41308-41327 None:intergenic 55.0%
AAAAGGGTCTTCCCTGTGCC+TGG + tig0027402:41335-41354 None:intergenic 55.0%
GATGCAATTGGTCGGGCAAG+GGG - tig0027402:41512-41531 Msa1433700:exon 55.0%
!! GATGGCTTTGGAACCACTGC+TGG - tig0027402:41602-41621 Msa1433700:intron 55.0%
CAGCACAACAACTCCAGCAG+TGG + tig0027402:41618-41637 None:intergenic 55.0%
CACTGCTGGAGTTGTTGTGC+TGG - tig0027402:41616-41635 Msa1433700:intron 55.0%
ATTTGGCGGTCAAAACGCCC+TGG + tig0027402:41686-41705 None:intergenic 55.0%
GAAGCAGGTCATGCTGTTGC+AGG - tig0027402:42004-42023 Msa1433700:intron 55.0%
CAGGTCATGCTGTTGCAGGT+TGG - tig0027402:42008-42027 Msa1433700:intron 55.0%
AAGGGTCGCACACCCAAGAT+TGG + tig0027402:42511-42530 None:intergenic 55.0%
GGTGAGACTGTGCGATGTCG+TGG + tig0027402:39093-39112 None:intergenic 60.0%
ATCGCACAGTCTCACCGGTG+CGG - tig0027402:39097-39116 Msa1433700:three_prime_UTR 60.0%
TGCCCACCATATCCCTTCGC+AGG + tig0027402:40756-40775 None:intergenic 60.0%
! GCCGGTGGTAAGGGTCCTTT+TGG - tig0027402:40966-40985 Msa1433700:CDS 60.0%
! GCTGGAGTTGTTGTGCTGGC+AGG - tig0027402:41620-41639 Msa1433700:intron 60.0%
!! CTCGCGGATCATCGGCTCTT+GGG - tig0027402:42074-42093 Msa1433700:intron 60.0%
GCTGCCGAGCAGGTTCTCAT+TGG - tig0027402:42181-42200 Msa1433700:intron 60.0%
! TCAGTCTCCGGTGACGGCGA+CGG - tig0027402:39059-39078 Msa1433700:three_prime_UTR 65.0%
TCGCCATCGCCGCCGACAAT+GGG + tig0027402:40443-40462 None:intergenic 65.0%
ATCGCCATCGCCGCCGACAA+TGG + tig0027402:40444-40463 None:intergenic 65.0%
! GCTCTTCTGGTGGGTCCTCC+AGG - tig0027402:41314-41333 Msa1433700:CDS 65.0%
! TGGTGGGTCCTCCAGGCACA+GGG - tig0027402:41321-41340 Msa1433700:CDS 65.0%
AGGGTCTTCCCTGTGCCTGG+AGG + tig0027402:41332-41351 None:intergenic 65.0%
GGTCGGGCAAGGGGTAGTAG+AGG - tig0027402:41521-41540 Msa1433700:exon 65.0%
CGGGCAAGGGGTAGTAGAGG+CGG - tig0027402:41524-41543 Msa1433700:five_prime_UTR 65.0%
CCAAGAGCCGATGATCCGCG+AGG + tig0027402:42076-42095 None:intergenic 65.0%
!! CCTCGCGGATCATCGGCTCT+TGG - tig0027402:42073-42092 Msa1433700:intron 65.0%
GTCGCCGTCACCGGAGACTG+AGG + tig0027402:39060-39079 None:intergenic 70.0%
CACCCCATTGTCGGCGGCGA+TGG - tig0027402:40437-40456 Msa1433700:CDS 70.0%
CGCCATCGCCGCCGACAATG+GGG + tig0027402:40442-40461 None:intergenic 70.0%
! CTGGTGGGTCCTCCAGGCAC+AGG - tig0027402:41320-41339 Msa1433700:CDS 70.0%
CTCGGCAGCCCGACCACCAA+GGG + tig0027402:42170-42189 None:intergenic 70.0%
TCGCTCACGCGTCGCCGCAC+CGG + tig0027402:39114-39133 None:intergenic 75.0%
GCTCGGCAGCCCGACCACCA+AGG + tig0027402:42171-42190 None:intergenic 75.0%
TGGTGGTCGGGCTGCCGAGC+AGG - tig0027402:42171-42190 Msa1433700:intron 75.0%
!! CTCCGGTGACGGCGACGGCG+AGG - tig0027402:39064-39083 Msa1433700:three_prime_UTR 80.0%
! CGCCTCGCCGTCGCCGTCAC+CGG + tig0027402:39069-39088 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
tig0027402 gene 39019 42831 39019 ID=Msa1433700;Name=Msa1433700
tig0027402 mRNA 39019 42831 39019 ID=Msa1433700-mRNA-1;Parent=Msa1433700;Name=Msa1433700-mRNA-1;_AED=0.08;_eAED=0.08;_QI=310|1|1|1|0.5|0.33|3|246|702
tig0027402 exon 39019 40653 39019 ID=Msa1433700-mRNA-1:exon:8770;Parent=Msa1433700-mRNA-1
tig0027402 exon 40804 41609 40804 ID=Msa1433700-mRNA-1:exon:8769;Parent=Msa1433700-mRNA-1
tig0027402 exon 42608 42831 42608 ID=Msa1433700-mRNA-1:exon:8768;Parent=Msa1433700-mRNA-1
tig0027402 five_prime_UTR 42608 42831 42608 ID=Msa1433700-mRNA-1:five_prime_utr;Parent=Msa1433700-mRNA-1
tig0027402 five_prime_UTR 41524 41609 41524 ID=Msa1433700-mRNA-1:five_prime_utr;Parent=Msa1433700-mRNA-1
tig0027402 CDS 40804 41523 40804 ID=Msa1433700-mRNA-1:cds;Parent=Msa1433700-mRNA-1
tig0027402 CDS 39265 40653 39265 ID=Msa1433700-mRNA-1:cds;Parent=Msa1433700-mRNA-1
tig0027402 three_prime_UTR 39019 39264 39019 ID=Msa1433700-mRNA-1:three_prime_utr;Parent=Msa1433700-mRNA-1
Gene Sequence

>Msa1433700

ATGGGAAACGATAAGAAAAAAACGAATCGAAAGAAGAAACAAAGTCAAACACAGAAGATGAAGGAAGGAAGCTTTCAAGAAGCATTGATGAAACAAATTCAAGAATTTCGCACCCCATTGTCGGCGGCGATGGCGATGATACTGATGATGGGGATAACTCTTTCTATCTTATATTTTGATACTGGGAAGCAGCAGCAGCAGATTAGCTTTCAGGAGTTTATGAATAAGCTTTTGGAACCAGGATTGGTAGATCATATTGTTGTCTCCGACAAAAATGTTGCCCAGATATATGTTTTGAACTCTCCTCGTAATCAAACAGAAACGAACTCTCCTCGTAATCAAACAGAAACGAACTCTCCTCGTAATCAAACAGATACGAACTCTCCTCGTAATCAAACAGAAACAGACGGTGAAGAAGAAACCCTTCCTGCGAAGGGATATGGTGGGCAATATAAATATTATTTCAATATTGGGAATGTCTTTACTTTTGAGGAGAAATTAGAGAGAGCTCAAATAGCACTGGGTGTTGACCATCATGATTTTGTACCTGTTACCTATTCTTCTGAAATTGGCTGGCACCTGGAGTTCTTGACATTCATTCAACACCTGTTGCCTTTGGCATTTCTCATCTATATGGTTGCCGGTGGTAAGGGTCCTTTTGGAGTCTTTAACATCGGAAAACCACATTTTACTAAAGTAGACAAAGACGCCAAAAACAAGGTCTATTTTAAAGATGTTGCTGGCTGTGATGAGGCAAAACAAGAAATTATGGAGTTTGTGCACTTCCTCAAGAGTCCTAAGAAATACCAAGAGCTTGGTGCCAAAATTCCAAAAGGTGCTCTTCTGGTGGGTCCTCCAGGCACAGGGAAGACCCTTTTAGCAAAAGCAACTGCAGGGGAATCTGGTGTGCCATTTCTCTCAATATCCGGTTCTGATTTCTTAGAACTGTTTGTTGGTGTTGGATCATCTAGAGTGAGAAACTTGTTTAAGGAAGCAAGGAAGTGTGCTCCTAGTATAGTATTTATTGATGAAATTGATGCAATTGGTCGGGCAAGGGGTAGTAGAGGCGGAGATCGTGCAAATGATGAACGTGAAAGTACTTTAAATCAATTGTTGGTGGAGATGGATGGCTTTGGAACCACTGCTGGAGTTGTTGTGCTGGCAGGTACAAATAGACCTGATGTATTAGACAAAGCCCTACTTAGACCAGGGCGTTTTGACCGCCAAATAACAATTGATAAACCTGACATCAAAGGTCGTGACCAGATATTTCAGATTTACTTGAAAGGGATCAAACTTGACCACGAGCCTTCATATTATTCACGTAAGCTTGCATCCCTTACTCCAGGATTTGCTGGAGCGGATATTGCTAATGTTTGCAATGAAGCTGCTCTGATTGCTGCAAGGACTGATGAAGCACACGTCACACATGATCATTTCGAGGCAGCTATTGATAGGATCATTGGTGGTTTGGAGAAGAAGAACAAGGTAATAAGTAAGCTGCAAAGACGCACCGTTGCTTACCATGAAGCAGGTCATGCTGTTGCAGGTTGGTTCTTGGAACATACTGACCCATTGTTGAAAGTAACTATTGTTCCTCGCGGATCATCGGCTCTTGGGTTTGCCCAGTATGTTCCGAATGAGAACCTTCTCATGACAAAGGAACAACTTTTCGATAGGACTTGTATGACCCTTGGTGGTCGGGCTGCCGAGCAGGTTCTCATTGGAACAATCTCTACAGGAGCACAAGATGACTTGGAGAAAGTTACCAAGATGACATATGCTCAAGTAGCCGTCTATGGTTTCAGCGAAAAAGTGGGCCTCCTCTCTTTCCCTCAAAAAGAGGACTCGTTAGAGATGTCTAAACCATACAGCAACAAAACTGGTGCAATCATTGATAATGAAGTGCGAGAATGGGTGGACAAAGCATATGAACGTACTGTGAAGCTTATAGAGAAAGAGAAGGAGAAAGTAGCTCAACTTGCGGAGTTGCTGCTTGAAAAAGAAGTTCTTCACCAAGATGACTTGCTTCCAATCTTGGGTGTGCGACCCTTCAAGAGTACTGAATCACCAATTATGATAGAGCCTGAGGTTGTTCCACATAGTTGA

Protein sequence

>Msa1433700

MGNDKKKTNRKKKQSQTQKMKEGSFQEALMKQIQEFRTPLSAAMAMILMMGITLSILYFDTGKQQQQISFQEFMNKLLEPGLVDHIVVSDKNVAQIYVLNSPRNQTETNSPRNQTETNSPRNQTDTNSPRNQTETDGEEETLPAKGYGGQYKYYFNIGNVFTFEEKLERAQIALGVDHHDFVPVTYSSEIGWHLEFLTFIQHLLPLAFLIYMVAGGKGPFGVFNIGKPHFTKVDKDAKNKVYFKDVAGCDEAKQEIMEFVHFLKSPKKYQELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFLELFVGVGSSRVRNLFKEARKCAPSIVFIDEIDAIGRARGSRGGDRANDERESTLNQLLVEMDGFGTTAGVVVLAGTNRPDVLDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKGIKLDHEPSYYSRKLASLTPGFAGADIANVCNEAALIAARTDEAHVTHDHFEAAIDRIIGGLEKKNKVISKLQRRTVAYHEAGHAVAGWFLEHTDPLLKVTIVPRGSSALGFAQYVPNENLLMTKEQLFDRTCMTLGGRAAEQVLIGTISTGAQDDLEKVTKMTYAQVAVYGFSEKVGLLSFPQKEDSLEMSKPYSNKTGAIIDNEVREWVDKAYERTVKLIEKEKEKVAQLAELLLEKEVLHQDDLLPILGVRPFKSTESPIMIEPEVVPHS*