AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1131090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1131090 MtrunA17_Chr4g0055651 100.000 202 0 0 1 202 1 202 1.32e-152 421
Msa1131090 MtrunA17_Chr7g0250531 88.119 202 24 0 1 202 1 202 2.63e-137 382
Msa1131090 MtrunA17_Chr8g0335471 88.177 203 23 1 1 202 1 203 7.18e-135 376
Msa1131090 MtrunA17_Chr2g0276931 77.778 198 43 1 4 200 5 202 3.32e-116 328
Msa1131090 MtrunA17_Chr4g0030911 60.000 205 72 4 4 200 11 213 1.61e-86 254
Msa1131090 MtrunA17_Chr1g0212521 58.537 205 76 3 4 200 11 214 1.45e-85 251
Msa1131090 MtrunA17_Chr1g0182321 58.654 208 75 4 4 202 11 216 2.57e-85 251
Msa1131090 MtrunA17_Chr7g0263071 59.135 208 74 4 4 202 11 216 6.03e-85 250
Msa1131090 MtrunA17_Chr1g0182301 58.173 208 76 4 4 202 11 216 8.55e-85 249
Msa1131090 MtrunA17_Chr2g0327911 52.657 207 81 5 5 200 12 212 6.71e-72 217
Msa1131090 MtrunA17_Chr4g0032201 46.445 211 104 2 1 202 5 215 2.13e-66 203
Msa1131090 MtrunA17_Chr2g0276941 47.619 210 99 3 4 202 11 220 1.44e-63 196
Msa1131090 MtrunA17_Chr2g0290891 45.455 209 102 1 5 201 3 211 6.89e-62 191
Msa1131090 MtrunA17_Chr6g0458081 54.545 165 75 0 5 169 3 167 7.20e-62 191
Msa1131090 MtrunA17_Chr3g0112681 45.794 214 100 3 1 201 5 215 4.36e-61 189
Msa1131090 MtrunA17_Chr2g0315551 46.445 211 103 2 2 202 7 217 5.84e-61 189
Msa1131090 MtrunA17_Chr8g0384311 48.259 201 99 4 4 200 9 208 4.70e-60 186
Msa1131090 MtrunA17_Chr4g0046261 45.024 211 106 1 2 202 7 217 1.75e-59 185
Msa1131090 MtrunA17_Chr2g0283131 45.024 211 106 1 2 202 7 217 1.82e-59 185
Msa1131090 MtrunA17_Chr7g0234201 47.059 204 99 1 7 201 12 215 3.26e-59 184
Msa1131090 MtrunA17_Chr1g0189361 46.698 212 97 3 6 201 12 223 3.69e-59 185
Msa1131090 MtrunA17_Chr3g0123821 43.868 212 106 2 2 200 10 221 4.46e-59 184
Msa1131090 MtrunA17_Chr8g0381841 52.632 171 79 2 2 171 11 180 6.93e-59 184
Msa1131090 MtrunA17_Chr7g0265001 47.525 202 101 3 5 201 13 214 8.33e-59 184
Msa1131090 MtrunA17_Chr4g0040781 44.550 211 107 1 2 202 7 217 1.25e-58 183
Msa1131090 MtrunA17_Chr2g0325091 45.498 211 106 1 1 202 4 214 2.72e-58 182
Msa1131090 MtrunA17_Chr2g0319951 46.009 213 102 3 2 202 7 218 1.55e-57 181
Msa1131090 MtrunA17_Chr8g0349711 51.534 163 79 0 7 169 5 167 1.55e-57 180
Msa1131090 MtrunA17_Chr1g0159481 48.768 203 98 4 4 201 13 214 5.09e-57 179
Msa1131090 MtrunA17_Chr8g0346421 43.434 198 112 0 1 198 19 216 9.00e-57 179
Msa1131090 MtrunA17_Chr8g0349681 52.071 169 81 0 5 173 381 549 3.75e-56 186
Msa1131090 MtrunA17_Chr8g0349681 48.214 168 87 0 2 169 169 336 2.33e-51 174
Msa1131090 MtrunA17_Chr8g0349681 50.000 160 80 0 7 166 12 171 6.26e-50 170
Msa1131090 MtrunA17_Chr1g0180291 47.264 201 100 5 5 200 11 210 6.84e-56 176
Msa1131090 MtrunA17_Chr7g0275991 43.878 196 106 2 6 198 18 212 3.66e-55 175
Msa1131090 MtrunA17_Chr7g0231131 43.128 211 108 2 2 200 9 219 4.99e-55 174
Msa1131090 MtrunA17_Chr3g0130271 46.040 202 103 5 4 200 8 208 1.02e-54 173
Msa1131090 MtrunA17_Chr6g0482721 48.925 186 93 2 1 185 5 189 2.13e-54 172
Msa1131090 MtrunA17_Chr1g0197331 47.549 204 103 4 2 201 9 212 4.35e-54 171
Msa1131090 MtrunA17_Chr8g0351861 47.368 171 90 0 6 176 14 184 8.07e-54 171
Msa1131090 MtrunA17_Chr1g0174281 48.810 168 86 0 2 169 9 176 1.05e-53 171
Msa1131090 MtrunA17_Chr8g0392931 46.948 213 100 4 1 201 7 218 2.24e-53 170
Msa1131090 MtrunA17_Chr7g0214241 47.126 174 92 0 7 180 14 187 2.65e-52 167
Msa1131090 MtrunA17_Chr3g0109721 44.103 195 100 4 10 201 12 200 6.10e-52 166
Msa1131090 MtrunA17_Chr5g0433561 42.268 194 105 3 10 201 12 200 2.38e-50 161
Msa1131090 MtrunA17_Chr8g0390561 41.237 194 106 3 10 201 11 198 9.41e-48 155
Msa1131090 MtrunA17_Chr1g0199331 42.236 161 92 1 10 169 33 193 2.86e-43 143
Msa1131090 MtrunA17_Chr8g0382221 37.056 197 120 1 9 201 10 206 5.73e-43 143
Msa1131090 MtrunA17_Chr5g0400131 36.735 196 119 1 9 199 10 205 1.20e-42 142
Msa1131090 MtrunA17_Chr4g0055081 39.752 161 97 0 9 169 10 170 1.02e-41 140
Msa1131090 MtrunA17_Chr3g0123971 41.615 161 94 0 9 169 10 170 1.74e-41 139
Msa1131090 MtrunA17_Chr2g0331691 38.308 201 113 5 8 200 10 207 4.54e-40 135
Msa1131090 MtrunA17_Chr4g0004661 38.308 201 113 5 8 200 64 261 5.95e-39 134
Msa1131090 MtrunA17_Chr4g0034871 40.476 168 93 3 8 168 8 175 3.42e-38 130
Msa1131090 MtrunA17_Chr6g0466301 35.922 206 112 6 8 201 8 205 3.78e-35 123
Msa1131090 MtrunA17_Chr6g0465491 35.922 206 112 6 8 201 8 205 3.78e-35 123
Msa1131090 MtrunA17_Chr1g0201121 37.952 166 96 3 8 166 8 173 5.30e-34 120
Msa1131090 MtrunA17_Chr8g0383261 36.747 166 98 2 8 166 12 177 5.74e-33 117
Msa1131090 MtrunA17_Chr3g0138101 30.435 184 119 4 9 188 14 192 1.99e-24 95.9
Msa1131090 MtrunA17_Chr3g0138111 30.435 184 119 4 9 188 14 192 2.02e-24 95.9
Msa1131090 MtrunA17_Chr3g0138121 30.435 184 119 4 9 188 14 192 2.15e-24 95.5
Msa1131090 MtrunA17_Chr6g0465471 33.690 187 104 6 25 199 7 185 7.82e-24 94.0
Msa1131090 MtrunA17_Chr6g0466161 33.690 187 104 6 25 199 7 185 1.21e-23 93.6
Msa1131090 MtrunA17_Chr4g0037021 31.737 167 100 5 8 162 6 170 6.77e-23 91.3
Msa1131090 MtrunA17_Chr6g0486041 31.737 167 100 5 8 162 6 170 8.45e-23 91.3
Msa1131090 MtrunA17_Chr8g0371501 31.953 169 101 5 8 164 6 172 2.41e-22 89.7
Msa1131090 MtrunA17_Chr4g0046211 35.772 123 76 3 8 129 6 126 3.65e-22 87.8
Msa1131090 MtrunA17_Chr5g0405791 31.361 169 102 5 8 164 6 172 1.23e-21 87.8
Msa1131090 MtrunA17_Chr1g0178291 36.416 173 100 4 5 177 428 590 2.20e-21 91.3
Msa1131090 MtrunA17_Chr3g0117931 30.220 182 108 6 8 177 8 182 3.56e-21 87.0
Msa1131090 MtrunA17_Chr2g0325101 29.586 169 105 5 8 164 6 172 6.70e-21 85.9
Msa1131090 MtrunA17_Chr6g0466431 35.354 99 55 1 8 106 8 97 7.14e-17 72.8
Msa1131090 MtrunA17_Chr6g0465611 35.354 99 55 1 8 106 8 97 7.14e-17 72.8
Msa1131090 MtrunA17_Chr5g0434561 36.232 138 78 4 9 145 20 148 3.67e-15 70.5
Msa1131090 MtrunA17_Chr5g0401071 28.994 169 110 5 9 172 20 183 1.46e-12 63.5
Msa1131090 MtrunA17_Chr5g0443631 23.214 168 123 2 9 171 105 271 8.46e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1131090 AT5G47200.1 90.099 202 20 0 1 202 1 202 1.98e-139 387
Msa1131090 AT4G17530.1 89.604 202 21 0 1 202 1 202 1.05e-138 386
Msa1131090 AT1G02130.1 87.192 203 25 1 1 202 1 203 2.38e-134 375
Msa1131090 AT3G11730.1 75.369 203 47 3 1 200 1 203 2.96e-114 324
Msa1131090 AT5G59840.1 59.615 208 73 4 4 202 11 216 1.28e-86 254
Msa1131090 AT3G46060.2 58.654 208 75 4 4 202 11 216 2.39e-85 251
Msa1131090 AT3G46060.3 58.654 208 75 4 4 202 11 216 2.39e-85 251
Msa1131090 AT3G46060.1 58.654 208 75 4 4 202 11 216 2.39e-85 251
Msa1131090 AT3G53610.2 57.488 207 79 3 4 202 11 216 2.23e-84 249
Msa1131090 AT3G53610.3 57.488 207 79 3 4 202 11 216 2.23e-84 249
Msa1131090 AT3G53610.1 57.488 207 79 3 4 202 11 216 2.23e-84 249
Msa1131090 AT3G09900.1 58.454 207 76 3 4 201 11 216 5.39e-82 243
Msa1131090 AT5G03520.1 59.024 205 76 3 4 201 11 214 2.63e-81 241
Msa1131090 AT4G17160.1 48.768 203 96 2 5 200 3 204 1.20e-65 201
Msa1131090 AT1G07410.1 45.714 210 106 2 1 202 5 214 1.16e-64 199
Msa1131090 AT5G47520.1 49.048 210 94 2 6 202 12 221 1.09e-63 196
Msa1131090 AT4G35860.1 45.370 216 92 2 5 201 3 211 1.88e-63 196
Msa1131090 AT1G09630.1 47.170 212 100 3 2 202 6 216 9.16e-63 194
Msa1131090 AT4G17170.1 46.411 209 100 2 5 201 3 211 3.57e-62 192
Msa1131090 AT5G45750.1 47.619 210 101 2 2 202 7 216 8.66e-62 191
Msa1131090 AT3G46830.1 44.131 213 108 1 1 202 5 217 3.64e-61 190
Msa1131090 AT3G46830.2 44.131 213 108 1 1 202 5 217 3.64e-61 190
Msa1131090 AT3G15060.1 48.113 212 98 3 2 202 7 217 4.53e-61 190
Msa1131090 AT5G03520.2 54.819 166 67 3 43 201 40 204 1.38e-60 188
Msa1131090 AT5G60860.1 45.972 211 104 1 2 202 7 217 1.73e-60 188
Msa1131090 AT1G28550.1 47.393 211 98 3 4 202 9 218 2.10e-60 188
Msa1131090 AT4G18430.1 45.714 210 104 1 2 201 7 216 2.20e-60 188
Msa1131090 AT3G07410.1 48.309 207 96 3 6 201 10 216 2.59e-60 188
Msa1131090 AT5G59150.1 42.723 213 111 1 1 202 5 217 3.05e-60 187
Msa1131090 AT1G16920.1 47.596 208 100 2 4 202 9 216 3.19e-60 187
Msa1131090 AT1G06400.1 45.238 210 106 2 2 202 7 216 4.32e-60 187
Msa1131090 AT4G39990.1 46.190 210 99 4 6 202 15 223 4.50e-60 187
Msa1131090 AT2G33870.1 46.919 211 99 3 4 202 9 218 1.66e-59 186
Msa1131090 AT5G47960.1 44.186 215 107 3 1 202 8 222 3.34e-59 185
Msa1131090 AT5G65270.1 45.540 213 99 5 6 202 15 226 6.66e-59 184
Msa1131090 AT4G18800.1 45.673 208 106 2 2 202 7 214 1.11e-58 184
Msa1131090 AT1G05810.1 44.231 208 105 2 6 202 10 217 5.17e-56 177
Msa1131090 AT1G43890.3 54.438 169 74 3 3 169 8 175 5.84e-56 177
Msa1131090 AT1G43890.1 54.438 169 74 3 3 169 8 175 5.84e-56 177
Msa1131090 AT1G43890.2 54.438 169 74 3 3 169 8 175 5.84e-56 177
Msa1131090 AT1G05810.2 44.231 208 105 2 6 202 56 263 1.07e-55 177
Msa1131090 AT5G03530.2 48.515 202 98 4 5 201 10 210 2.03e-55 175
Msa1131090 AT5G03530.1 48.515 202 98 4 5 201 10 210 2.03e-55 175
Msa1131090 AT2G43130.1 44.608 204 105 2 6 201 10 213 2.44e-55 175
Msa1131090 AT3G12160.1 42.654 211 109 2 2 200 9 219 4.81e-55 174
Msa1131090 AT1G18200.1 46.798 203 98 1 2 194 7 209 8.22e-55 174
Msa1131090 AT1G73640.1 48.691 191 93 2 4 190 9 198 9.56e-54 172
Msa1131090 AT2G31680.1 43.062 209 107 2 6 202 10 218 1.13e-53 171
Msa1131090 AT1G01200.1 43.781 201 110 2 1 198 21 221 1.73e-51 166
Msa1131090 AT4G19640.1 41.969 193 107 2 10 201 12 200 2.89e-48 157
Msa1131090 AT5G45130.1 41.538 195 105 4 10 201 12 200 4.21e-46 151
Msa1131090 AT3G54840.1 43.353 173 92 3 10 181 35 202 9.70e-45 147
Msa1131090 AT3G09910.5 45.405 185 97 4 5 187 10 192 1.18e-44 147
Msa1131090 AT3G09910.4 45.405 185 97 4 5 187 10 192 1.18e-44 147
Msa1131090 AT5G45130.2 40.933 193 105 4 12 201 22 208 1.63e-44 147
Msa1131090 AT2G44610.1 37.879 198 118 1 9 201 10 207 2.12e-44 147
Msa1131090 AT3G09910.3 44.500 200 105 4 5 202 10 205 2.41e-44 147
Msa1131090 AT3G09910.1 44.500 200 105 4 5 202 10 205 2.41e-44 147
Msa1131090 AT3G09910.2 44.500 200 105 4 5 202 10 205 2.41e-44 147
Msa1131090 AT3G54840.3 43.023 172 92 3 11 181 2 168 2.45e-44 145
Msa1131090 AT3G54840.2 44.805 154 84 1 10 162 35 188 6.05e-44 145
Msa1131090 AT4G35860.2 42.105 171 73 2 50 201 2 165 1.39e-42 141
Msa1131090 AT2G22290.1 38.191 199 115 3 9 201 10 206 6.25e-42 140
Msa1131090 AT5G10260.1 36.041 197 121 1 9 200 10 206 6.12e-41 138
Msa1131090 AT1G52280.1 39.500 200 110 5 8 199 8 204 8.98e-41 137
Msa1131090 AT4G39890.1 41.975 162 93 1 9 169 10 171 1.11e-40 137
Msa1131090 AT5G59150.2 39.634 164 88 1 50 202 3 166 1.71e-40 135
Msa1131090 AT3G18820.1 42.857 168 89 3 8 168 8 175 3.11e-40 136
Msa1131090 AT3G16100.1 38.500 200 112 5 8 199 8 204 1.38e-39 134
Msa1131090 AT5G64990.1 39.759 166 100 0 9 174 8 173 1.91e-38 132
Msa1131090 AT4G19640.3 45.802 131 71 0 10 140 12 142 2.02e-37 129
Msa1131090 AT1G49300.2 37.000 200 115 5 8 199 8 204 3.29e-37 129
Msa1131090 AT1G49300.1 37.000 200 115 5 8 199 8 204 3.29e-37 129
Msa1131090 AT2G21880.1 39.157 166 94 3 8 166 9 174 1.56e-36 127
Msa1131090 AT4G19640.2 46.400 125 67 0 10 134 12 136 2.13e-36 124
Msa1131090 AT5G64990.2 38.150 173 100 1 9 174 8 180 1.17e-35 125
Msa1131090 AT1G22740.1 35.784 204 109 5 8 199 8 201 1.57e-35 124
Msa1131090 AT4G09720.1 39.759 166 93 3 8 166 8 173 7.12e-34 120
Msa1131090 AT4G09720.4 37.427 171 95 3 8 166 8 178 7.37e-32 115
Msa1131090 AT5G39620.1 40.000 165 92 4 9 166 6 170 1.71e-31 114
Msa1131090 AT4G09720.3 36.158 177 95 3 8 166 8 184 7.06e-31 112
Msa1131090 AT2G21880.4 40.146 137 75 3 37 166 13 149 1.06e-28 106
Msa1131090 AT2G21880.3 40.146 137 75 3 37 166 13 149 1.06e-28 106
Msa1131090 AT2G21880.2 34.337 166 94 4 8 166 9 166 1.18e-26 101
Msa1131090 AT4G09720.6 40.876 137 74 3 37 166 3 139 2.39e-26 99.8
Msa1131090 AT4G09720.5 40.876 137 74 3 37 166 3 139 2.39e-26 99.8
Msa1131090 AT4G09720.2 40.876 137 74 3 37 166 3 139 2.39e-26 99.8
Msa1131090 AT2G44690.1 34.132 167 96 5 8 162 18 182 4.12e-25 97.8
Msa1131090 AT4G35020.1 33.728 169 98 5 8 164 6 172 1.23e-24 96.3
Msa1131090 AT4G35020.2 33.728 169 98 5 8 164 6 172 1.23e-24 96.3
Msa1131090 AT4G35020.3 33.728 169 98 5 8 164 6 172 1.23e-24 96.3
Msa1131090 AT5G55190.1 30.435 184 119 4 9 188 14 192 2.72e-24 95.9
Msa1131090 AT4G28950.1 33.333 165 98 5 8 162 6 168 3.00e-24 95.5
Msa1131090 AT5G20020.1 28.796 191 129 3 9 195 14 201 3.90e-24 95.5
Msa1131090 AT5G55080.1 30.864 162 107 4 9 169 14 171 4.03e-24 95.5
Msa1131090 AT5G20010.1 31.056 161 108 2 9 169 14 171 5.14e-24 95.1
Msa1131090 AT3G51300.1 32.934 167 98 5 10 164 8 172 1.25e-23 93.6
Msa1131090 AT1G75840.1 32.544 169 100 5 8 164 6 172 3.63e-23 92.0
Msa1131090 AT2G17800.2 32.544 169 100 5 8 164 6 172 6.87e-23 91.7
Msa1131090 AT2G17800.1 32.544 169 100 5 8 164 6 172 6.87e-23 91.7
Msa1131090 AT4G35950.1 32.544 169 100 5 8 164 6 172 9.95e-23 91.3
Msa1131090 AT5G45970.1 30.539 167 102 5 8 162 6 170 4.73e-22 89.4
Msa1131090 AT5G46025.1 40.187 107 63 1 70 175 6 112 6.01e-22 86.7
Msa1131090 AT1G20090.1 31.361 169 102 5 8 164 5 171 1.37e-21 88.2
Msa1131090 AT3G48040.1 30.178 169 104 5 8 164 8 174 1.12e-20 85.9
Msa1131090 AT5G62880.1 29.885 174 108 5 8 169 8 179 6.61e-20 84.0
Msa1131090 AT3G48040.2 33.333 123 79 3 8 129 8 128 3.98e-19 81.3
Msa1131090 AT5G62880.2 34.146 123 78 3 8 129 8 128 6.09e-19 80.9
Msa1131090 AT4G35020.4 35.965 114 70 3 10 122 8 119 2.45e-18 78.2
Msa1131090 AT4G35020.5 35.965 114 70 3 10 122 8 119 2.45e-18 78.2
Msa1131090 AT5G67560.1 33.962 159 95 5 9 162 20 173 3.84e-14 68.2
Msa1131090 AT5G37680.1 34.058 138 81 4 9 145 20 148 4.13e-14 68.2
Msa1131090 AT3G49870.2 31.609 174 99 6 9 172 1 164 4.88e-14 67.4
Msa1131090 AT3G51290.2 32.394 142 82 5 35 164 634 773 5.05e-14 70.5
Msa1131090 AT3G49870.1 32.759 174 97 7 9 172 20 183 1.58e-13 66.2
Msa1131090 AT3G22950.1 31.298 131 76 5 1 127 12 132 1.57e-11 60.8
Msa1131090 AT3G22950.2 31.298 131 76 5 1 127 12 132 1.57e-11 60.8
Msa1131090 AT3G49860.1 28.205 156 104 4 9 160 12 163 1.90e-11 60.5
Msa1131090 AT5G37680.2 35.780 109 60 4 38 145 2 101 3.50e-11 58.9

Find 82 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACTGGTTGTCCTCGAATT+TGG 0.194037 7_3:-83447818 None:intergenic
ACTTACAATTTGAAGTTTAA+TGG 0.206147 7_3:-83446628 None:intergenic
CCTCGAATTTGGACTGTTGC+AGG 0.237144 7_3:-83447807 None:intergenic
CAGGCATTTGCAGATGAAAT+TGG 0.240708 7_3:+83447527 Msa1131090:intron
CTGCTGGTCAAGAACGTTTC+CGG 0.274066 7_3:+83447101 Msa1131090:CDS
AGAGTTGAGACTTACTATTC+AGG 0.317299 7_3:-83444384 None:intergenic
TGAGTAACGTAAAATGTGTT+TGG 0.320714 7_3:-83448088 None:intergenic
GAGTAACGTAAAATGTGTTT+GGG 0.326797 7_3:-83448087 None:intergenic
TGAAATTGGAATTCCTTTCA+TGG 0.332549 7_3:+83447541 Msa1131090:CDS
TCACTTATCTCTTTAGTTGT+TGG 0.357342 7_3:+83448129 Msa1131090:three_prime_UTR
CAATGTGGAACAAGCTTTCA+TGG 0.386569 7_3:+83447586 Msa1131090:CDS
TAACATTGTTAAAGCTCTCT+TGG 0.389666 7_3:-83447280 None:intergenic
TCTTAGAGACCAAGTATTCA+TGG 0.395534 7_3:+83447864 Msa1131090:exon
TACTCAATAGCTTCCCGTAT+TGG 0.396704 7_3:+83448105 Msa1131090:three_prime_UTR
TTGGCGGCGAAGGGAGTTAC+CGG 0.401990 7_3:-83444314 None:intergenic
AATTTGGACTGTTGCAGGCC+TGG 0.409513 7_3:-83447802 None:intergenic
AATGTTAACAAGCTTCTAGT+TGG 0.417837 7_3:+83447341 Msa1131090:CDS
CTTCTAAGACCATGAATACT+TGG 0.425115 7_3:-83447873 None:intergenic
AAGAGATAAGTGAGCCAATA+CGG 0.427083 7_3:-83448119 None:intergenic
TGTTGCAGGCCTGGCACTGT+TGG 0.432139 7_3:-83447793 None:intergenic
AAGGGATCGGAAGAAGGGTT+TGG 0.448179 7_3:-83444333 None:intergenic
GAAGAAGGGTTTGGCGGCGA+AGG 0.457568 7_3:-83444324 None:intergenic
AAAGATGGAAGAAGAAATGA+AGG 0.458708 7_3:-83444258 None:intergenic
CAACCAGCCTTCTGATTCAC+TGG 0.461146 7_3:-83447834 None:intergenic
AGAAATTGAGAAGCGAAAGA+TGG 0.467173 7_3:-83444273 None:intergenic
GAAAATCCGCACTGTTGAGC+AGG 0.471772 7_3:+83446596 Msa1131090:intron
GTCAACCTGCCAACAGTGCC+AGG 0.473985 7_3:+83447784 Msa1131090:CDS
AGCTACTATCGTGGGGCTCA+TGG 0.480037 7_3:+83447136 Msa1131090:CDS
GAAAGCTTGTTCCACATTGG+AGG 0.502915 7_3:-83447582 None:intergenic
ATCGGAAAGGGATCGGAAGA+AGG 0.506069 7_3:-83444339 None:intergenic
TTGATTGGAGATTCTGGTGT+GGG 0.506444 7_3:+83445934 Msa1131090:CDS
AAGAAGGGTTTGGCGGCGAA+GGG 0.509600 7_3:-83444323 None:intergenic
ATTGTATAGTGGGACACTGC+TGG 0.512939 7_3:+83447085 Msa1131090:intron
TCCGCACTGTTGAGCAGGAT+GGG 0.520866 7_3:+83446601 Msa1131090:CDS
TTAGCACTAGTTTCCATGAA+AGG 0.524383 7_3:-83447554 None:intergenic
ATCCGCACTGTTGAGCAGGA+TGG 0.528930 7_3:+83446600 Msa1131090:CDS
CGAAGGGAGTTACCGGTCGC+CGG 0.530964 7_3:-83444307 None:intergenic
AATCACCTTTGCTGTTTCAG+AGG 0.533991 7_3:-83447399 None:intergenic
CGGAGGTATACGCATCAAGA+AGG 0.536232 7_3:-83444201 None:intergenic
TAAAATGACTCGCTTGGTGT+CGG 0.537749 7_3:-83444221 None:intergenic
ATGACGGTGAGAGGTTGAAT+CGG 0.541849 7_3:-83444357 None:intergenic
AGTAGCTGCTAGTTATAGTC+CGG 0.542099 7_3:-83447120 None:intergenic
GGATCGGAAGAAGGGTTTGG+CGG 0.546873 7_3:-83444330 None:intergenic
TAACTAGCAGCTACTATCGT+GGG 0.548282 7_3:+83447128 Msa1131090:CDS
ATACGCATCAAGAAGGGAGT+GGG 0.550854 7_3:-83444194 None:intergenic
GTGACGTATGCCAACCACTT+CGG 0.553366 7_3:-83444171 None:intergenic
AGAGATAAGTGAGCCAATAC+GGG 0.555982 7_3:-83448118 None:intergenic
AGGTTGAATCGGAAAGGGAT+CGG 0.562913 7_3:-83444346 None:intergenic
TGTGTTTGGGGCAACGAACA+AGG 0.563689 7_3:-83448074 None:intergenic
GTGAGAGGTTGAATCGGAAA+GGG 0.564038 7_3:-83444351 None:intergenic
GACAGCTATATCAGTACCAT+CGG 0.567693 7_3:+83446473 Msa1131090:CDS
CAGAACTTACAGCAAACCTC+AGG 0.568006 7_3:-83445972 None:intergenic
TGGAAACAAGAGCGATCTCT+CGG 0.568213 7_3:+83447361 Msa1131090:CDS
GCAAGTCATGTCTCCTCCTG+AGG 0.576917 7_3:+83445956 Msa1131090:CDS
TGGTACTGATATAGCTGTCA+AGG 0.577148 7_3:-83446469 None:intergenic
CAACCAGTGAATCAGAAGGC+TGG 0.579043 7_3:+83447831 Msa1131090:CDS
GGTGAGAGGTTGAATCGGAA+AGG 0.581313 7_3:-83444352 None:intergenic
TCAGGATTCATGACGGTGAG+AGG 0.583650 7_3:-83444366 None:intergenic
CCTGCAACAGTCCAAATTCG+AGG 0.584589 7_3:+83447807 Msa1131090:CDS
TATACGCATCAAGAAGGGAG+TGG 0.591545 7_3:-83444195 None:intergenic
CATGAAAGCTTGTTCCACAT+TGG 0.594293 7_3:-83447585 None:intergenic
TCGGAAAGGGATCGGAAGAA+GGG 0.597755 7_3:-83444338 None:intergenic
GGAACAAGCTTTCATGGCCA+TGG 0.601950 7_3:+83447592 Msa1131090:CDS
AATGACTCGCTTGGTGTCGG+AGG 0.604170 7_3:-83444218 None:intergenic
GTTGATTGGAGATTCTGGTG+TGG 0.609925 7_3:+83445933 Msa1131090:CDS
GTGGCAAGCACCGAAGTGGT+TGG 0.616304 7_3:+83444161 None:intergenic
AACTTACAGCAAACCTCAGG+AGG 0.618028 7_3:-83445969 None:intergenic
AGAAGTTCCATGTGTCTCTG+TGG 0.620705 7_3:+83447891 Msa1131090:three_prime_UTR
ATAACTAGCAGCTACTATCG+TGG 0.626182 7_3:+83447127 Msa1131090:CDS
GGAGGTATACGCATCAAGAA+GGG 0.627373 7_3:-83444200 None:intergenic
GCTTACAAAGTCCACTCCGA+TGG 0.633467 7_3:-83446489 None:intergenic
GCTTTAACAATGTTAAGCAG+TGG 0.636327 7_3:+83447288 Msa1131090:CDS
TTACATGCCACAGAGACACA+TGG 0.640787 7_3:-83447898 None:intergenic
TGTGTCCTCTGAAACAGCAA+AGG 0.645238 7_3:+83447394 Msa1131090:CDS
TCCCATCCTGCTCAACAGTG+CGG 0.647894 7_3:-83446602 None:intergenic
ACACGTGGCAAGCACCGAAG+TGG 0.657830 7_3:+83444157 None:intergenic
AGTAACGTAAAATGTGTTTG+GGG 0.658888 7_3:-83448086 None:intergenic
AGGACAACCAGTGAATCAGA+AGG 0.666165 7_3:+83447827 Msa1131090:CDS
TACGCATCAAGAAGGGAGTG+GGG 0.671176 7_3:-83444193 None:intergenic
AACTAGCAGCTACTATCGTG+GGG 0.674225 7_3:+83447129 Msa1131090:CDS
CTATATCAGTACCATCGGAG+TGG 0.681244 7_3:+83446478 Msa1131090:CDS
TTACTATTCAGGATTCATGA+CGG 0.701188 7_3:-83444373 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAAATTTAAAATAAGAC+AGG - chr7_3:83444471-83444490 None:intergenic 10.0%
!!! AAGAATCATAATTATTTTAT+GGG - chr7_3:83445721-83445740 None:intergenic 10.0%
!! AAAATGTAATAGTAAAAAAT+GGG - chr7_3:83446077-83446096 None:intergenic 10.0%
!!! TTGTTTTATGATTGAATTTA+GGG + chr7_3:83444954-83444973 Msa1131090:intron 15.0%
!!! TTTTAAACCTATTAACTTTA+GGG - chr7_3:83445116-83445135 None:intergenic 15.0%
!!! TTTTTAAACCTATTAACTTT+AGG - chr7_3:83445117-83445136 None:intergenic 15.0%
!! TAGGTTTAAAAATTTATTAG+AGG + chr7_3:83445125-83445144 Msa1131090:intron 15.0%
!!! CAAGAATCATAATTATTTTA+TGG - chr7_3:83445722-83445741 None:intergenic 15.0%
!! AATAATATCATATCTTTGAT+TGG + chr7_3:83445868-83445887 Msa1131090:intron 15.0%
!! ATAATATCATATCTTTGATT+GGG + chr7_3:83445869-83445888 Msa1131090:intron 15.0%
!! GAAAAAAAAAAAAAAAACAG+GGG - chr7_3:83446000-83446019 None:intergenic 15.0%
!! GGAAAAAAAAAAAAAAAACA+GGG - chr7_3:83446001-83446020 None:intergenic 15.0%
!! AGGAAAAAAAAAAAAAAAAC+AGG - chr7_3:83446002-83446021 None:intergenic 15.0%
!! GAAAATGTAATAGTAAAAAA+TGG - chr7_3:83446078-83446097 None:intergenic 15.0%
!!! CTTTTTAATTTTTTTTTTGC+AGG + chr7_3:83447238-83447257 Msa1131090:intron 15.0%
!! ACATCAAAATATTAGATTAA+AGG - chr7_3:83447490-83447509 None:intergenic 15.0%
!! AAAAAATTATGTACAAAAGT+AGG + chr7_3:83448027-83448046 Msa1131090:three_prime_UTR 15.0%
!!! TTTACTTTTTATCTTATGCA+TGG + chr7_3:83444570-83444589 Msa1131090:intron 20.0%
!! AACTAAACATGATAACTAAA+CGG - chr7_3:83444672-83444691 None:intergenic 20.0%
!! TTTCTTAAAATTGATACACA+TGG + chr7_3:83444815-83444834 Msa1131090:intron 20.0%
!! TTCTTAAAATTGATACACAT+GGG + chr7_3:83444816-83444835 Msa1131090:intron 20.0%
!!! GTTGTTTTATGATTGAATTT+AGG + chr7_3:83444953-83444972 Msa1131090:intron 20.0%
!! TATGTTAAAAAATGTTGTAC+AGG + chr7_3:83445264-83445283 Msa1131090:intron 20.0%
!! TGGTATATCCTTATAAAATA+AGG + chr7_3:83445533-83445552 Msa1131090:intron 20.0%
!!! AACATTCTCCTTATTTTATA+AGG - chr7_3:83445544-83445563 None:intergenic 20.0%
!!! TTTAAATCGAAATTTTGTCT+TGG - chr7_3:83445658-83445677 None:intergenic 20.0%
!! TAATATCATATCTTTGATTG+GGG + chr7_3:83445870-83445889 Msa1131090:intron 20.0%
!!! TTTTTTTCCTTCTTTAGTTA+CGG + chr7_3:83446012-83446031 Msa1131090:intron 20.0%
!! AGTTGAATATAAAGAACATA+TGG + chr7_3:83446104-83446123 Msa1131090:intron 20.0%
!!! CTTGAATGATATTTTATGAA+GGG + chr7_3:83446395-83446414 Msa1131090:intron 20.0%
!! ATAAGTTTAAATGGTAGATA+TGG - chr7_3:83446518-83446537 None:intergenic 20.0%
!! AACATGGAAATAAGTTTAAA+TGG - chr7_3:83446527-83446546 None:intergenic 20.0%
!!! ACTTACAATTTGAAGTTTAA+TGG - chr7_3:83446631-83446650 None:intergenic 20.0%
!! TTTAGATGTAGAAAACAAAT+TGG - chr7_3:83446741-83446760 None:intergenic 20.0%
!! TTATATGTCCATTTGATAAA+TGG + chr7_3:83446876-83446895 Msa1131090:intron 20.0%
!! TTGATTTCCTAATATTCAAT+GGG - chr7_3:83446977-83446996 None:intergenic 20.0%
!!! ATTGATTTCCTAATATTCAA+TGG - chr7_3:83446978-83446997 None:intergenic 20.0%
!!! TGCATTTTTTTATTGTATAG+TGG + chr7_3:83447074-83447093 Msa1131090:intron 20.0%
!!! GCATTTTTTTATTGTATAGT+GGG + chr7_3:83447075-83447094 Msa1131090:intron 20.0%
!! CAAAATATTAGATTAAAGGA+AGG - chr7_3:83447486-83447505 None:intergenic 20.0%
!! CAATTTCTCTTTTCTTTATC+CGG + chr7_3:83444288-83444307 Msa1131090:five_prime_UTR 25.0%
!!! AGGAAAGAATTAATTTGTGA+CGG - chr7_3:83444451-83444470 None:intergenic 25.0%
!! AGAGATGTTCAATTTTCATA+AGG + chr7_3:83444744-83444763 Msa1131090:intron 25.0%
! TCAATCATAAAACAACACTT+AGG - chr7_3:83444949-83444968 None:intergenic 25.0%
! CATATTCATTGATCTATCTA+TGG - chr7_3:83445069-83445088 None:intergenic 25.0%
!! TTTTTAACATATATCCCACA+TGG - chr7_3:83445255-83445274 None:intergenic 25.0%
! TAAATGATGTCCTATATATG+TGG + chr7_3:83445365-83445384 Msa1131090:intron 25.0%
! AATCAATTTCTTGTCTTCAT+TGG + chr7_3:83445513-83445532 Msa1131090:intron 25.0%
!! AAATGAGTTCTAGTCTATAA+TGG - chr7_3:83445783-83445802 None:intergenic 25.0%
! ATTATAGACTAGAACTCATT+TGG + chr7_3:83445782-83445801 Msa1131090:intron 25.0%
! TTATAGACTAGAACTCATTT+GGG + chr7_3:83445783-83445802 Msa1131090:intron 25.0%
!! TATCTTTTTCCTAAAGAGAA+TGG - chr7_3:83445838-83445857 None:intergenic 25.0%
!! ATTCTCTTTAGGAAAAAGAT+AGG + chr7_3:83445837-83445856 Msa1131090:intron 25.0%
! ATAGTCACTGAAAATAAGAT+AGG - chr7_3:83445899-83445918 None:intergenic 25.0%
! CCTTCATAAAATATCATTCA+AGG - chr7_3:83446397-83446416 None:intergenic 25.0%
!! CCTTGAATGATATTTTATGA+AGG + chr7_3:83446394-83446413 Msa1131090:intron 25.0%
!! TTTTTCTTTTTCTGTGAAAC+AGG + chr7_3:83446436-83446455 Msa1131090:intron 25.0%
! TACTAAAGTTGAAAACAACA+TGG - chr7_3:83446543-83446562 None:intergenic 25.0%
! AATACTGAACAAGTTGTTAT+TGG + chr7_3:83446675-83446694 Msa1131090:intron 25.0%
! CATTTGAACAGTATTATTTG+AGG + chr7_3:83446940-83446959 Msa1131090:intron 25.0%
! AAAGTTACCCATTGAATATT+AGG + chr7_3:83446967-83446986 Msa1131090:intron 25.0%
!! AATTTCCTTTTCAAACACTT+CGG + chr7_3:83446995-83447014 Msa1131090:intron 25.0%
!! AATTGTGAGTCTTTTTAAAC+CGG + chr7_3:83447162-83447181 Msa1131090:intron 25.0%
!! ATTTCCTTTTTACATTGTCT+TGG + chr7_3:83447198-83447217 Msa1131090:intron 25.0%
!! TTTCCTTTTTACATTGTCTT+GGG + chr7_3:83447199-83447218 Msa1131090:intron 25.0%
! TATGGAATTTCTGTATGTAA+AGG + chr7_3:83447635-83447654 Msa1131090:intron 25.0%
! GTAAATGAGGTTAATAATCA+AGG - chr7_3:83447732-83447751 None:intergenic 25.0%
AAAGATGGAAGAAGAAATGA+AGG - chr7_3:83444261-83444280 None:intergenic 30.0%
TTACTATTCAGGATTCATGA+CGG - chr7_3:83444376-83444395 None:intergenic 30.0%
!! TTAATTTGTGACGGGAAATT+TGG - chr7_3:83444442-83444461 None:intergenic 30.0%
!! GGAAAGAATTAATTTGTGAC+GGG - chr7_3:83444450-83444469 None:intergenic 30.0%
! TGGATTGTGAAATTTGTTCA+TGG + chr7_3:83444590-83444609 Msa1131090:intron 30.0%
! TTGATTATGTGATCCACTTT+TGG + chr7_3:83444716-83444735 Msa1131090:intron 30.0%
TAAAATTGATACACATGGGA+TGG + chr7_3:83444820-83444839 Msa1131090:intron 30.0%
AAAACAACACTTAGGAATGA+AGG - chr7_3:83444941-83444960 None:intergenic 30.0%
!! TCTATAGTTTGTTTCTTCCA+CGG + chr7_3:83445008-83445027 Msa1131090:intron 30.0%
ATGATGTCTTGAGTAAAATG+TGG + chr7_3:83445086-83445105 Msa1131090:intron 30.0%
! TAAACCTATTAACTTTAGGG+AGG - chr7_3:83445113-83445132 None:intergenic 30.0%
! TGTCTTTTGTAATCTTGTAC+TGG + chr7_3:83445183-83445202 Msa1131090:intron 30.0%
! GTCTTTTGTAATCTTGTACT+GGG + chr7_3:83445184-83445203 Msa1131090:intron 30.0%
! TCTTTTGTAATCTTGTACTG+GGG + chr7_3:83445185-83445204 Msa1131090:intron 30.0%
! GAAATACTTTTGTCCATTAG+AGG - chr7_3:83445214-83445233 None:intergenic 30.0%
AAAAAATGTTGTACAGGTCA+TGG + chr7_3:83445270-83445289 Msa1131090:intron 30.0%
AAAAATGTTGTACAGGTCAT+GGG + chr7_3:83445271-83445290 Msa1131090:intron 30.0%
! GCAAGCAAGCTTTTATAAAA+AGG + chr7_3:83445591-83445610 Msa1131090:intron 30.0%
! TTGTTCAAGCTTTTGTTGAT+TGG + chr7_3:83445919-83445938 Msa1131090:CDS 30.0%
! GAACATATGGATGTGTTTTT+AGG + chr7_3:83446117-83446136 Msa1131090:intron 30.0%
TCTTGACCATAAACAATGTA+AGG + chr7_3:83446218-83446237 Msa1131090:intron 30.0%
!!! GTCATTTTTATGTGAGAAGA+AGG - chr7_3:83446328-83446347 None:intergenic 30.0%
! GAATGATATTTTATGAAGGG+AGG + chr7_3:83446398-83446417 Msa1131090:intron 30.0%
!! ATTTTCTAAAGAAGGAAGCA+TGG - chr7_3:83446582-83446601 None:intergenic 30.0%
!!! TCCATGAGAAGTTTTATTTG+AGG + chr7_3:83446827-83446846 Msa1131090:intron 30.0%
TCCTCAAATAAAACTTCTCA+TGG - chr7_3:83446831-83446850 None:intergenic 30.0%
! AATTGGTAACTGGAAAAACT+TGG - chr7_3:83446908-83446927 None:intergenic 30.0%
AAATGATCCAAGAACACAAT+TGG - chr7_3:83446925-83446944 None:intergenic 30.0%
AAAAGGAAATTGCTGACAAA+GGG - chr7_3:83447188-83447207 None:intergenic 30.0%
AAAAAGGAAATTGCTGACAA+AGG - chr7_3:83447189-83447208 None:intergenic 30.0%
TTTCCCAAGACAATGTAAAA+AGG - chr7_3:83447205-83447224 None:intergenic 30.0%
TAACATTGTTAAAGCTCTCT+TGG - chr7_3:83447283-83447302 None:intergenic 30.0%
! TAACATTTTCACTTGCATAG+CGG - chr7_3:83447328-83447347 None:intergenic 30.0%
AATGTTAACAAGCTTCTAGT+TGG + chr7_3:83447341-83447360 Msa1131090:CDS 30.0%
AAAAAAATGTCACTGGAAGT+GGG - chr7_3:83447458-83447477 None:intergenic 30.0%
AAAAAAAATGTCACTGGAAG+TGG - chr7_3:83447459-83447478 None:intergenic 30.0%
GGACTTAAAAAAAATGTCAC+TGG - chr7_3:83447465-83447484 None:intergenic 30.0%
TGAAATTGGAATTCCTTTCA+TGG + chr7_3:83447541-83447560 Msa1131090:CDS 30.0%
GCTGAAATTAAAAACAGGTA+TGG + chr7_3:83447617-83447636 Msa1131090:intron 30.0%
! CAGTATCTATTGACTAAACA+AGG - chr7_3:83447704-83447723 None:intergenic 30.0%
AGTAACGTAAAATGTGTTTG+GGG - chr7_3:83448089-83448108 None:intergenic 30.0%
GAGTAACGTAAAATGTGTTT+GGG - chr7_3:83448090-83448109 None:intergenic 30.0%
TGAGTAACGTAAAATGTGTT+TGG - chr7_3:83448091-83448110 None:intergenic 30.0%
TCACTTATCTCTTTAGTTGT+TGG + chr7_3:83448129-83448148 Msa1131090:three_prime_UTR 30.0%
!!! GAGTTTTAAAATGACTCGCT+TGG - chr7_3:83444230-83444249 None:intergenic 35.0%
AGAAATTGAGAAGCGAAAGA+TGG - chr7_3:83444276-83444295 None:intergenic 35.0%
AGAGTTGAGACTTACTATTC+AGG - chr7_3:83444387-83444406 None:intergenic 35.0%
TAAACGGATCTAAATCAGCA+AGG - chr7_3:83444635-83444654 None:intergenic 35.0%
AGATCCGTTTAATTAGTCGA+TGG + chr7_3:83444644-83444663 Msa1131090:intron 35.0%
! GGATCCATCGACTAATTAAA+CGG - chr7_3:83444651-83444670 None:intergenic 35.0%
ACATCTCTTGAAACCAAAAG+TGG - chr7_3:83444732-83444751 None:intergenic 35.0%
GTAAATGCATGTGAACTCTA+AGG + chr7_3:83444766-83444785 Msa1131090:intron 35.0%
!! CTCTGAGTTGAAAAAGCATT+CGG - chr7_3:83444985-83445004 None:intergenic 35.0%
TGCATGACTTCAATCAATCT+AGG + chr7_3:83445326-83445345 Msa1131090:intron 35.0%
ATGTACGATGCCACATATAT+AGG - chr7_3:83445378-83445397 None:intergenic 35.0%
GCAAAACATGACTGTCTAAA+AGG - chr7_3:83445407-83445426 None:intergenic 35.0%
!! CTTTTGTTGATTGGAGATTC+TGG + chr7_3:83445928-83445947 Msa1131090:CDS 35.0%
AAGATGACCGTAACTAAAGA+AGG - chr7_3:83446022-83446041 None:intergenic 35.0%
!! AGGCATTGAAAAAGTGTGTA+TGG + chr7_3:83446137-83446156 Msa1131090:intron 35.0%
TATATGCACCAGAGAGTAAA+AGG + chr7_3:83446189-83446208 Msa1131090:intron 35.0%
! GATTTACTCCTTTTACTCTC+TGG - chr7_3:83446200-83446219 None:intergenic 35.0%
CCTTGACCTTACATTGTTTA+TGG - chr7_3:83446227-83446246 None:intergenic 35.0%
CCATAAACAATGTAAGGTCA+AGG + chr7_3:83446224-83446243 Msa1131090:intron 35.0%
CTATTTGTGGTTTGATCGAA+CGG + chr7_3:83446291-83446310 Msa1131090:intron 35.0%
!! TTATTGGTTCTGAACTCTGA+TGG + chr7_3:83446691-83446710 Msa1131090:intron 35.0%
!! TATTGGTTCTGAACTCTGAT+GGG + chr7_3:83446692-83446711 Msa1131090:intron 35.0%
GGAATGAGCCATTTATCAAA+TGG - chr7_3:83446887-83446906 None:intergenic 35.0%
ACATTGTCTTGGGAAAACAA+TGG + chr7_3:83447209-83447228 Msa1131090:intron 35.0%
GCTTTAACAATGTTAAGCAG+TGG + chr7_3:83447288-83447307 Msa1131090:CDS 35.0%
! TTAGCACTAGTTTCCATGAA+AGG - chr7_3:83447557-83447576 None:intergenic 35.0%
!!! GTTTTTAATTTCAGCAGCCA+TGG - chr7_3:83447612-83447631 None:intergenic 35.0%
TGGCTGCTGAAATTAAAAAC+AGG + chr7_3:83447612-83447631 Msa1131090:CDS 35.0%
! CCATTCTGTGAAAAAAGTAC+CGG - chr7_3:83447761-83447780 None:intergenic 35.0%
TCTTAGAGACCAAGTATTCA+TGG + chr7_3:83447864-83447883 Msa1131090:exon 35.0%
!! CTTCTAAGACCATGAATACT+TGG - chr7_3:83447876-83447895 None:intergenic 35.0%
AAGAGATAAGTGAGCCAATA+CGG - chr7_3:83448122-83448141 None:intergenic 35.0%
!! TAAAATGACTCGCTTGGTGT+CGG - chr7_3:83444224-83444243 None:intergenic 40.0%
!! GGAGAAGTGTTAAGCAGAAA+AGG - chr7_3:83444421-83444440 None:intergenic 40.0%
TGCGCAGATCTAACTAAACA+AGG - chr7_3:83444507-83444526 None:intergenic 40.0%
GATAATGTAATCACCTGTGC+CGG + chr7_3:83444880-83444899 Msa1131090:intron 40.0%
!! TAGTTTGTTTCTTCCACGGT+TGG + chr7_3:83445012-83445031 Msa1131090:intron 40.0%
! TTTCTTCCACGGTTGGTATA+AGG + chr7_3:83445019-83445038 Msa1131090:intron 40.0%
! TTCTTCCACGGTTGGTATAA+GGG + chr7_3:83445020-83445039 Msa1131090:intron 40.0%
TGGTCCTCCCTAAAGTTAAT+AGG + chr7_3:83445106-83445125 Msa1131090:intron 40.0%
TAAAGCTAGTGAAGTCCATG+TGG + chr7_3:83445237-83445256 Msa1131090:intron 40.0%
AAAGCTAGTGAAGTCCATGT+GGG + chr7_3:83445238-83445257 Msa1131090:intron 40.0%
!! TCATGTTTTGCTGTCTACTG+TGG + chr7_3:83445416-83445435 Msa1131090:intron 40.0%
GAGAATGGCCATAGCAAAAT+GGG - chr7_3:83445823-83445842 None:intergenic 40.0%
AGAGAATGGCCATAGCAAAA+TGG - chr7_3:83445824-83445843 None:intergenic 40.0%
TTGCTATGGCCATTCTCTTT+AGG + chr7_3:83445826-83445845 Msa1131090:intron 40.0%
TTGATTGGAGATTCTGGTGT+GGG + chr7_3:83445934-83445953 Msa1131090:CDS 40.0%
TACATAGTGAGATTGTGAGC+AGG + chr7_3:83446165-83446184 Msa1131090:intron 40.0%
CAGAGTCACATCTCTATTTG+TGG + chr7_3:83446278-83446297 Msa1131090:intron 40.0%
!! TGGTACTGATATAGCTGTCA+AGG - chr7_3:83446472-83446491 None:intergenic 40.0%
GACAGCTATATCAGTACCAT+CGG + chr7_3:83446473-83446492 Msa1131090:CDS 40.0%
!! CAGTGCGGATTTTCTAAAGA+AGG - chr7_3:83446590-83446609 None:intergenic 40.0%
! CCAAGAACACAATTGGTAAC+TGG - chr7_3:83446918-83446937 None:intergenic 40.0%
CCAGTTACCAATTGTGTTCT+TGG + chr7_3:83446915-83446934 Msa1131090:intron 40.0%
! TTGAGCCGAAGTGTTTGAAA+AGG - chr7_3:83447003-83447022 None:intergenic 40.0%
AACACTTCGGCTCAATTATC+TGG + chr7_3:83447008-83447027 Msa1131090:intron 40.0%
ACACTTCGGCTCAATTATCT+GGG + chr7_3:83447009-83447028 Msa1131090:intron 40.0%
AGTAGCTGCTAGTTATAGTC+CGG - chr7_3:83447123-83447142 None:intergenic 40.0%
ATAACTAGCAGCTACTATCG+TGG + chr7_3:83447127-83447146 Msa1131090:CDS 40.0%
TAACTAGCAGCTACTATCGT+GGG + chr7_3:83447128-83447147 Msa1131090:CDS 40.0%
!! AATCACCTTTGCTGTTTCAG+AGG - chr7_3:83447402-83447421 None:intergenic 40.0%
TGGAAGTGGGACATGTATAT+GGG - chr7_3:83447445-83447464 None:intergenic 40.0%
! GTTTGTGCCTTTTGTACATC+AGG + chr7_3:83447508-83447527 Msa1131090:intron 40.0%
GCAAATGCCTGATGTACAAA+AGG - chr7_3:83447518-83447537 None:intergenic 40.0%
CAGGCATTTGCAGATGAAAT+TGG + chr7_3:83447527-83447546 Msa1131090:intron 40.0%
TGCTAAAAATGCCTCCAATG+TGG + chr7_3:83447571-83447590 Msa1131090:CDS 40.0%
! CATGAAAGCTTGTTCCACAT+TGG - chr7_3:83447588-83447607 None:intergenic 40.0%
CAATGTGGAACAAGCTTTCA+TGG + chr7_3:83447586-83447605 Msa1131090:CDS 40.0%
!!! CCGGTACTTTTTTCACAGAA+TGG + chr7_3:83447758-83447777 Msa1131090:intron 40.0%
TACTCAATAGCTTCCCGTAT+TGG + chr7_3:83448105-83448124 Msa1131090:three_prime_UTR 40.0%
AGAGATAAGTGAGCCAATAC+GGG - chr7_3:83448121-83448140 None:intergenic 40.0%
ATACGCATCAAGAAGGGAGT+GGG - chr7_3:83444197-83444216 None:intergenic 45.0%
TATACGCATCAAGAAGGGAG+TGG - chr7_3:83444198-83444217 None:intergenic 45.0%
! GGAGGTATACGCATCAAGAA+GGG - chr7_3:83444203-83444222 None:intergenic 45.0%
! TCTTTTCTTTATCCGGCGAC+CGG + chr7_3:83444295-83444314 Msa1131090:five_prime_UTR 45.0%
AGGTTGAATCGGAAAGGGAT+CGG - chr7_3:83444349-83444368 None:intergenic 45.0%
GTGAGAGGTTGAATCGGAAA+GGG - chr7_3:83444354-83444373 None:intergenic 45.0%
ATGACGGTGAGAGGTTGAAT+CGG - chr7_3:83444360-83444379 None:intergenic 45.0%
!! GAACTCTAAGGTCTCTGTGA+TGG + chr7_3:83444778-83444797 Msa1131090:intron 45.0%
! CTTAGGAATGAAGGTGTGTC+TGG - chr7_3:83444932-83444951 None:intergenic 45.0%
! TCTTCCACGGTTGGTATAAG+GGG + chr7_3:83445021-83445040 Msa1131090:intron 45.0%
TGTACTGGGGAATCCTCTAA+TGG + chr7_3:83445198-83445217 Msa1131090:intron 45.0%
AGATTGCTTAACTAGTGCCC+CGG + chr7_3:83445677-83445696 Msa1131090:intron 45.0%
CAAAATGGGTGACTGTGACA+TGG - chr7_3:83445809-83445828 None:intergenic 45.0%
! CACAGTCACCCATTTTGCTA+TGG + chr7_3:83445812-83445831 Msa1131090:intron 45.0%
GTTGATTGGAGATTCTGGTG+TGG + chr7_3:83445933-83445952 Msa1131090:CDS 45.0%
AACTTACAGCAAACCTCAGG+AGG - chr7_3:83445972-83445991 None:intergenic 45.0%
CAGAACTTACAGCAAACCTC+AGG - chr7_3:83445975-83445994 None:intergenic 45.0%
ACTCTCTCACTTGACAGTCA+AGG + chr7_3:83446346-83446365 Msa1131090:intron 45.0%
CTATATCAGTACCATCGGAG+TGG + chr7_3:83446478-83446497 Msa1131090:CDS 45.0%
! TCGGCTCAATTATCTGGGAT+TGG + chr7_3:83447014-83447033 Msa1131090:intron 45.0%
! ATTGTATAGTGGGACACTGC+TGG + chr7_3:83447085-83447104 Msa1131090:intron 45.0%
AACTAGCAGCTACTATCGTG+GGG + chr7_3:83447129-83447148 Msa1131090:CDS 45.0%
TGGAAACAAGAGCGATCTCT+CGG + chr7_3:83447361-83447380 Msa1131090:CDS 45.0%
!! TGTGTCCTCTGAAACAGCAA+AGG + chr7_3:83447394-83447413 Msa1131090:CDS 45.0%
GGAAGTGGGACATGTATATG+GGG - chr7_3:83447444-83447463 None:intergenic 45.0%
CTGGAAGTGGGACATGTATA+TGG - chr7_3:83447446-83447465 None:intergenic 45.0%
! GAAAGCTTGTTCCACATTGG+AGG - chr7_3:83447585-83447604 None:intergenic 45.0%
TAACCTCATTTACTCGTCGC+CGG + chr7_3:83447739-83447758 Msa1131090:intron 45.0%
! TCACTGGTTGTCCTCGAATT+TGG - chr7_3:83447821-83447840 None:intergenic 45.0%
AGGACAACCAGTGAATCAGA+AGG + chr7_3:83447827-83447846 Msa1131090:CDS 45.0%
AGAAGTTCCATGTGTCTCTG+TGG + chr7_3:83447891-83447910 Msa1131090:three_prime_UTR 45.0%
TTACATGCCACAGAGACACA+TGG - chr7_3:83447901-83447920 None:intergenic 45.0%
GTGACGTATGCCAACCACTT+CGG - chr7_3:83444174-83444193 None:intergenic 50.0%
TACGCATCAAGAAGGGAGTG+GGG - chr7_3:83444196-83444215 None:intergenic 50.0%
! CGGAGGTATACGCATCAAGA+AGG - chr7_3:83444204-83444223 None:intergenic 50.0%
AAGGGATCGGAAGAAGGGTT+TGG - chr7_3:83444336-83444355 None:intergenic 50.0%
TCGGAAAGGGATCGGAAGAA+GGG - chr7_3:83444341-83444360 None:intergenic 50.0%
ATCGGAAAGGGATCGGAAGA+AGG - chr7_3:83444342-83444361 None:intergenic 50.0%
GGTGAGAGGTTGAATCGGAA+AGG - chr7_3:83444355-83444374 None:intergenic 50.0%
TCAGGATTCATGACGGTGAG+AGG - chr7_3:83444369-83444388 None:intergenic 50.0%
!! GCGCATTCGTTGTTTTGCGA+TGG + chr7_3:83444522-83444541 Msa1131090:intron 50.0%
AGATCCCCTTATACCAACCG+TGG - chr7_3:83445028-83445047 None:intergenic 50.0%
TGCTTGCTTAACCAATGCCC+CGG - chr7_3:83445578-83445597 None:intergenic 50.0%
GATTGCTTAACTAGTGCCCC+GGG + chr7_3:83445678-83445697 Msa1131090:intron 50.0%
ATTGCTTAACTAGTGCCCCG+GGG + chr7_3:83445679-83445698 Msa1131090:intron 50.0%
TCTTGTTAACCAATGCCCCC+GGG - chr7_3:83445698-83445717 None:intergenic 50.0%
! GTCTTGTTAACCAATGCCCC+CGG - chr7_3:83445699-83445718 None:intergenic 50.0%
GCTTACAAAGTCCACTCCGA+TGG - chr7_3:83446492-83446511 None:intergenic 50.0%
GAAAATCCGCACTGTTGAGC+AGG + chr7_3:83446596-83446615 Msa1131090:intron 50.0%
CTGCTGGTCAAGAACGTTTC+CGG + chr7_3:83447101-83447120 Msa1131090:CDS 50.0%
GGAAATTGCTGACAAAGGGC+CGG - chr7_3:83447184-83447203 None:intergenic 50.0%
GGAACAAGCTTTCATGGCCA+TGG + chr7_3:83447592-83447611 Msa1131090:CDS 50.0%
AATTTGGACTGTTGCAGGCC+TGG - chr7_3:83447805-83447824 None:intergenic 50.0%
CCTCGAATTTGGACTGTTGC+AGG - chr7_3:83447810-83447829 None:intergenic 50.0%
CCTGCAACAGTCCAAATTCG+AGG + chr7_3:83447807-83447826 Msa1131090:CDS 50.0%
CAACCAGTGAATCAGAAGGC+TGG + chr7_3:83447831-83447850 Msa1131090:CDS 50.0%
CAACCAGCCTTCTGATTCAC+TGG - chr7_3:83447837-83447856 None:intergenic 50.0%
! TGTGTTTGGGGCAACGAACA+AGG - chr7_3:83448077-83448096 None:intergenic 50.0%
!! AATGACTCGCTTGGTGTCGG+AGG - chr7_3:83444221-83444240 None:intergenic 55.0%
AAGAAGGGTTTGGCGGCGAA+GGG - chr7_3:83444326-83444345 None:intergenic 55.0%
GGATCGGAAGAAGGGTTTGG+CGG - chr7_3:83444333-83444352 None:intergenic 55.0%
! GTAATCACCTGTGCCGGTGT+CGG + chr7_3:83444886-83444905 Msa1131090:intron 55.0%
TGTCGGACACTGGCATGTGT+AGG + chr7_3:83444903-83444922 Msa1131090:intron 55.0%
AGAATGTTAACCCGTGCCCC+CGG + chr7_3:83445556-83445575 Msa1131090:intron 55.0%
TTGCTTAACCAATGCCCCGG+GGG - chr7_3:83445575-83445594 None:intergenic 55.0%
CTTGCTTAACCAATGCCCCG+GGG - chr7_3:83445576-83445595 None:intergenic 55.0%
GCTTGCTTAACCAATGCCCC+GGG - chr7_3:83445577-83445596 None:intergenic 55.0%
TTGCTTAACTAGTGCCCCGG+GGG + chr7_3:83445680-83445699 Msa1131090:intron 55.0%
CTTGTTAACCAATGCCCCCG+GGG - chr7_3:83445697-83445716 None:intergenic 55.0%
GCAAGTCATGTCTCCTCCTG+AGG + chr7_3:83445956-83445975 Msa1131090:CDS 55.0%
ATCCGCACTGTTGAGCAGGA+TGG + chr7_3:83446600-83446619 Msa1131090:CDS 55.0%
TCCGCACTGTTGAGCAGGAT+GGG + chr7_3:83446601-83446620 Msa1131090:CDS 55.0%
TCCCATCCTGCTCAACAGTG+CGG - chr7_3:83446605-83446624 None:intergenic 55.0%
AGCTACTATCGTGGGGCTCA+TGG + chr7_3:83447136-83447155 Msa1131090:CDS 55.0%
! GTACCGGCGACGAGTAAATG+AGG - chr7_3:83447745-83447764 None:intergenic 55.0%
TTGGCGGCGAAGGGAGTTAC+CGG - chr7_3:83444317-83444336 None:intergenic 60.0%
GAAGAAGGGTTTGGCGGCGA+AGG - chr7_3:83444327-83444346 None:intergenic 60.0%
CACATGCCAGTGTCCGACAC+CGG - chr7_3:83444902-83444921 None:intergenic 60.0%
GAATGTTAACCCGTGCCCCC+GGG + chr7_3:83445557-83445576 Msa1131090:intron 60.0%
AATGTTAACCCGTGCCCCCG+GGG + chr7_3:83445558-83445577 Msa1131090:intron 60.0%
GTCAACCTGCCAACAGTGCC+AGG + chr7_3:83447784-83447803 Msa1131090:CDS 60.0%
TGTTGCAGGCCTGGCACTGT+TGG - chr7_3:83447796-83447815 None:intergenic 60.0%
CGAAGGGAGTTACCGGTCGC+CGG - chr7_3:83444310-83444329 None:intergenic 65.0%
TAACCAATGCCCCGGGGGCA+CGG - chr7_3:83445570-83445589 None:intergenic 65.0%
! AACTAGTGCCCCGGGGGCAT+TGG + chr7_3:83445686-83445705 Msa1131090:intron 65.0%
CCAGTGTCCGACACCGGCAC+AGG - chr7_3:83444896-83444915 None:intergenic 70.0%
! CCTGTGCCGGTGTCGGACAC+TGG + chr7_3:83444893-83444912 Msa1131090:intron 70.0%
! AACCAATGCCCCGGGGGCAC+GGG - chr7_3:83445569-83445588 None:intergenic 70.0%
GCAGGCCTGGCACTGTTGGC+AGG - chr7_3:83447792-83447811 None:intergenic 70.0%
AACCCGTGCCCCCGGGGCAT+TGG + chr7_3:83445564-83445583 Msa1131090:intron 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 83444165 83448220 83444165 ID=Msa1131090;Name=Msa1131090
chr7_3 mRNA 83444165 83448220 83444165 ID=Msa1131090-mRNA-1;Parent=Msa1131090;Name=Msa1131090-mRNA-1;_AED=0.10;_eAED=0.10;_QI=213|1|1|1|1|1|8|351|202
chr7_3 exon 83444165 83444391 83444165 ID=Msa1131090-mRNA-1:exon:24783;Parent=Msa1131090-mRNA-1
chr7_3 exon 83445912 83445984 83445912 ID=Msa1131090-mRNA-1:exon:24784;Parent=Msa1131090-mRNA-1
chr7_3 exon 83446458 83446505 83446458 ID=Msa1131090-mRNA-1:exon:24785;Parent=Msa1131090-mRNA-1
chr7_3 exon 83446597 83446644 83446597 ID=Msa1131090-mRNA-1:exon:24786;Parent=Msa1131090-mRNA-1
chr7_3 exon 83447094 83447165 83447094 ID=Msa1131090-mRNA-1:exon:24787;Parent=Msa1131090-mRNA-1
chr7_3 exon 83447260 83447415 83447260 ID=Msa1131090-mRNA-1:exon:24788;Parent=Msa1131090-mRNA-1
chr7_3 exon 83447530 83447633 83447530 ID=Msa1131090-mRNA-1:exon:24789;Parent=Msa1131090-mRNA-1
chr7_3 exon 83447776 83448220 83447776 ID=Msa1131090-mRNA-1:exon:24790;Parent=Msa1131090-mRNA-1
chr7_3 five_prime_UTR 83444165 83444377 83444165 ID=Msa1131090-mRNA-1:five_prime_utr;Parent=Msa1131090-mRNA-1
chr7_3 CDS 83444378 83444391 83444378 ID=Msa1131090-mRNA-1:cds;Parent=Msa1131090-mRNA-1
chr7_3 CDS 83445912 83445984 83445912 ID=Msa1131090-mRNA-1:cds;Parent=Msa1131090-mRNA-1
chr7_3 CDS 83446458 83446505 83446458 ID=Msa1131090-mRNA-1:cds;Parent=Msa1131090-mRNA-1
chr7_3 CDS 83446597 83446644 83446597 ID=Msa1131090-mRNA-1:cds;Parent=Msa1131090-mRNA-1
chr7_3 CDS 83447094 83447165 83447094 ID=Msa1131090-mRNA-1:cds;Parent=Msa1131090-mRNA-1
chr7_3 CDS 83447260 83447415 83447260 ID=Msa1131090-mRNA-1:cds;Parent=Msa1131090-mRNA-1
chr7_3 CDS 83447530 83447633 83447530 ID=Msa1131090-mRNA-1:cds;Parent=Msa1131090-mRNA-1
chr7_3 CDS 83447776 83447869 83447776 ID=Msa1131090-mRNA-1:cds;Parent=Msa1131090-mRNA-1
chr7_3 three_prime_UTR 83447870 83448220 83447870 ID=Msa1131090-mRNA-1:three_prime_utr;Parent=Msa1131090-mRNA-1
Gene Sequence

>Msa1131090

ATGAATCCTGAATATGACTATTTGTTCAAGCTTTTGTTGATTGGAGATTCTGGTGTGGGCAAGTCATGTCTCCTCCTGAGGTTTGCTGATGATTCATACCTTGACAGCTATATCAGTACCATCGGAGTGGACTTTAAAATCCGCACTGTTGAGCAGGATGGGAAGACCATTAAACTTCAAATTTGGGACACTGCTGGTCAAGAACGTTTCCGGACTATAACTAGCAGCTACTATCGTGGGGCTCATGGCATAATTGTTGTTTACGATGTCACTGACCAAGAGAGCTTTAACAATGTTAAGCAGTGGCTGAATGAAATTGACCGCTATGCAAGTGAAAATGTTAACAAGCTTCTAGTTGGAAACAAGAGCGATCTCTCGGACAAAAAAGTTGTGTCCTCTGAAACAGCAAAGGCATTTGCAGATGAAATTGGAATTCCTTTCATGGAAACTAGTGCTAAAAATGCCTCCAATGTGGAACAAGCTTTCATGGCCATGGCTGCTGAAATTAAAAACAGAATGGCGAGTCAACCTGCCAACAGTGCCAGGCCTGCAACAGTCCAAATTCGAGGACAACCAGTGAATCAGAAGGCTGGTTGCTGCTCGTCTTAG
Protein sequence

>Msa1131090

MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLSDKKVVSSETAKAFADEIGIPFMETSAKNASNVEQAFMAMAAEIKNRMASQPANSARPATVQIRGQPVNQKAGCCSS*