AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0382310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0382310 MtrunA17_Chr3g0135861 98.834 343 4 0 1 343 1 343 0.0 699
Msa0382310 MtrunA17_Chr6g0488081 55.063 316 135 3 21 336 5 313 5.79e-124 358
Msa0382310 MtrunA17_Chr6g0488341 47.909 263 109 4 74 336 4 238 9.47e-80 243
Msa0382310 MtrunA17_Chr6g0463041 49.398 249 105 3 107 336 1 247 3.23e-79 242
Msa0382310 MtrunA17_Chr5g0396801 38.272 324 156 8 33 331 36 340 4.41e-65 209
Msa0382310 MtrunA17_Chr8g0347451 35.180 361 182 11 3 331 15 355 1.36e-60 198
Msa0382310 MtrunA17_Chr7g0240341 33.856 319 164 10 32 329 22 314 1.87e-47 162
Msa0382310 MtrunA17_Chr7g0240341 26.360 239 142 10 116 341 11 228 7.07e-12 65.5
Msa0382310 MtrunA17_Chr8g0385571 32.459 305 171 8 35 331 227 504 1.26e-46 165
Msa0382310 MtrunA17_Chr7g0252401 32.459 305 168 7 35 331 207 481 2.54e-45 161
Msa0382310 MtrunA17_Chr1g0149111 32.237 304 171 8 32 329 136 410 1.09e-44 158
Msa0382310 MtrunA17_Chr1g0149111 28.972 214 131 4 14 227 215 407 1.70e-19 89.0
Msa0382310 MtrunA17_Chr3g0131501 31.494 308 174 8 33 331 203 482 2.53e-43 155
Msa0382310 MtrunA17_Chr3g0131501 27.184 206 122 5 35 233 299 483 2.41e-16 79.7
Msa0382310 MtrunA17_Chr3g0137941 31.023 303 176 7 32 329 119 393 5.28e-42 150
Msa0382310 MtrunA17_Chr3g0137941 30.841 214 127 3 14 227 198 390 2.72e-21 94.0
Msa0382310 MtrunA17_Chr2g0296061 27.914 326 184 6 37 329 17 324 2.09e-41 147
Msa0382310 MtrunA17_Chr2g0296061 26.570 207 134 5 129 328 13 208 2.59e-16 78.6
Msa0382310 MtrunA17_Chr5g0436041 33.123 317 169 8 32 330 31 322 9.24e-41 145
Msa0382310 MtrunA17_Chr5g0436041 30.374 214 130 3 19 232 129 323 4.34e-16 78.2
Msa0382310 MtrunA17_Chr4g0006851 32.877 292 157 7 46 330 100 359 1.73e-40 146
Msa0382310 MtrunA17_Chr4g0006851 27.333 150 97 3 194 342 140 278 1.80e-13 70.9
Msa0382310 MtrunA17_Chr4g0063561 30.368 326 190 9 11 329 99 394 3.54e-40 145
Msa0382310 MtrunA17_Chr3g0135801 30.631 333 196 9 14 331 11 323 8.35e-40 143
Msa0382310 MtrunA17_Chr4g0067231 27.576 330 182 7 37 329 16 325 1.21e-38 140
Msa0382310 MtrunA17_Chr4g0067231 28.571 210 128 7 129 328 12 209 3.53e-18 84.0
Msa0382310 MtrunA17_Chr7g0242311 29.617 287 165 4 46 326 98 353 2.72e-36 135
Msa0382310 MtrunA17_Chr7g0242311 28.000 150 96 3 194 342 138 276 2.03e-15 76.6
Msa0382310 MtrunA17_Chr6g0488171 53.153 111 50 1 226 336 1 109 3.31e-36 127
Msa0382310 MtrunA17_Chr4g0000261 27.327 333 184 11 32 340 63 361 8.55e-30 117
Msa0382310 MtrunA17_Chr3g0088301 30.769 312 176 11 31 326 89 376 6.85e-29 115
Msa0382310 MtrunA17_Chr8g0393031 31.186 295 160 11 33 309 16 285 1.43e-28 112
Msa0382310 MtrunA17_Chr7g0269701 26.316 304 192 8 37 329 24 306 1.02e-27 110
Msa0382310 MtrunA17_Chr8g0352031 30.547 311 179 9 31 326 64 352 9.71e-27 108
Msa0382310 MtrunA17_Chr8g0382201 28.000 325 175 9 33 331 193 484 3.08e-26 108
Msa0382310 MtrunA17_Chr2g0328891 30.476 315 179 11 31 329 62 352 3.75e-26 107
Msa0382310 MtrunA17_Chr1g0195101 27.027 296 180 11 47 329 31 303 5.15e-25 103
Msa0382310 MtrunA17_Chr1g0195101 27.957 186 116 5 147 330 35 204 1.32e-12 67.8
Msa0382310 MtrunA17_Chr4g0040341 29.524 315 176 11 31 326 71 358 5.13e-24 101
Msa0382310 MtrunA17_Chr4g0004571 28.188 298 184 8 33 324 14 287 3.07e-23 97.8
Msa0382310 MtrunA17_Chr4g0004571 25.943 212 129 6 21 224 95 286 8.48e-11 62.0
Msa0382310 MtrunA17_Chr5g0423111 26.014 296 183 8 47 329 33 305 3.45e-23 98.6
Msa0382310 MtrunA17_Chr3g0115801 26.361 349 202 9 6 331 89 405 3.79e-23 99.4
Msa0382310 MtrunA17_Chr8g0366791 28.431 306 197 7 33 330 7 298 1.32e-22 96.3
Msa0382310 MtrunA17_Chr5g0436571 28.028 289 185 8 51 319 24 309 1.39e-21 94.0
Msa0382310 MtrunA17_Chr5g0411411 27.451 306 200 7 33 330 7 298 9.97e-21 90.9
Msa0382310 MtrunA17_Chr3g0086811 25.680 331 216 8 16 326 8 328 1.23e-18 85.9
Msa0382310 MtrunA17_Chr7g0275411 27.509 269 169 10 70 326 78 332 1.17e-16 79.7
Msa0382310 MtrunA17_Chr8g0386871 23.920 301 184 7 36 327 321 585 2.74e-16 80.1
Msa0382310 MtrunA17_Chr4g0008061 24.503 302 196 6 37 328 17 296 2.98e-16 78.2
Msa0382310 MtrunA17_Chr8g0372531 23.368 291 184 9 51 323 30 299 1.07e-15 76.6
Msa0382310 MtrunA17_Chr1g0201361 24.062 320 196 8 20 335 36 312 1.83e-15 76.3
Msa0382310 MtrunA17_Chr6g0488301 38.462 104 21 1 226 329 1 61 2.92e-15 70.1
Msa0382310 MtrunA17_Chr3g0126331 26.007 273 179 8 66 326 123 384 6.77e-15 75.1
Msa0382310 MtrunA17_Chr6g0463351 27.240 279 158 8 51 318 83 327 9.30e-15 74.3
Msa0382310 MtrunA17_Chr6g0463351 25.366 205 131 3 36 236 161 347 1.43e-13 70.9
Msa0382310 MtrunA17_Chr2g0331771 25.333 300 191 10 33 324 154 428 2.39e-14 73.6
Msa0382310 MtrunA17_Chr1g0196921 21.290 310 209 9 34 331 13 299 2.66e-14 72.4
Msa0382310 MtrunA17_Chr8g0383321 24.116 311 191 8 21 329 38 305 6.76e-14 71.6
Msa0382310 MtrunA17_Chr5g0431531 26.452 310 187 8 31 329 35 314 1.07e-13 70.9
Msa0382310 MtrunA17_Chr3g0103681 22.654 309 202 9 31 326 11 295 2.96e-13 69.3
Msa0382310 MtrunA17_Chr7g0241521 22.903 310 205 8 31 329 13 299 1.15e-12 67.8
Msa0382310 MtrunA17_Chr2g0293621 24.671 304 190 9 51 337 45 326 1.72e-12 67.4
Msa0382310 MtrunA17_Chr4g0046981 22.830 311 210 6 33 331 10 302 4.15e-12 66.2
Msa0382310 MtrunA17_Chr7g0219891 29.189 185 101 6 146 322 36 198 1.24e-11 64.7
Msa0382310 MtrunA17_Chr6g0488161 40.741 81 37 1 21 90 5 85 1.93e-11 59.7
Msa0382310 MtrunA17_Chr4g0028531 25.633 316 195 14 21 323 9 297 4.16e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0382310 AT1G14560.1 64.118 340 109 3 1 338 1 329 2.01e-146 416
Msa0382310 AT1G14560.2 64.856 313 97 3 1 311 1 302 3.36e-132 379
Msa0382310 AT4G26180.1 55.732 314 133 3 26 339 12 319 2.99e-126 365
Msa0382310 AT4G26180.2 55.944 286 120 3 26 311 12 291 6.92e-114 332
Msa0382310 AT1G14560.3 65.812 234 75 2 107 338 1 231 5.01e-110 320
Msa0382310 AT4G01100.1 36.697 327 159 8 33 331 40 346 2.83e-60 197
Msa0382310 AT4G01100.2 33.067 375 182 10 2 331 10 360 6.36e-57 189
Msa0382310 AT4G01100.3 35.556 315 157 7 44 331 1 296 6.19e-56 184
Msa0382310 AT4G01100.3 27.363 201 130 6 37 227 97 291 1.11e-14 73.9
Msa0382310 AT2G37890.1 33.125 320 171 9 33 334 43 337 3.57e-49 168
Msa0382310 AT2G37890.1 29.949 197 121 4 32 227 149 329 1.40e-20 91.7
Msa0382310 AT2G37890.1 29.870 231 133 9 121 341 35 246 1.48e-14 73.9
Msa0382310 AT3G53940.1 33.333 321 171 9 32 334 70 365 9.17e-49 167
Msa0382310 AT3G55640.1 32.797 311 172 8 34 329 37 325 8.61e-48 164
Msa0382310 AT3G55640.4 32.797 311 172 8 34 329 37 325 8.61e-48 164
Msa0382310 AT5G61810.2 30.921 304 163 7 33 326 63 329 4.13e-42 149
Msa0382310 AT5G61810.2 26.768 198 122 3 35 230 156 332 3.16e-15 75.9
Msa0382310 AT5G48970.1 27.964 329 183 6 37 329 24 334 4.60e-41 147
Msa0382310 AT5G48970.1 27.273 209 132 5 129 329 20 216 4.72e-18 84.3
Msa0382310 AT3G21390.1 29.091 330 177 7 37 329 21 330 4.67e-41 147
Msa0382310 AT3G21390.1 29.469 207 126 5 129 328 17 210 1.13e-19 89.0
Msa0382310 AT5G61810.1 30.744 309 167 7 33 331 206 477 5.13e-41 150
Msa0382310 AT5G51050.1 29.236 301 179 5 35 329 223 495 5.76e-41 150
Msa0382310 AT4G32400.1 32.131 305 170 8 32 329 111 385 5.97e-41 148
Msa0382310 AT4G32400.1 27.830 212 134 3 26 237 200 392 5.91e-17 81.6
Msa0382310 AT3G21390.2 29.091 330 177 7 37 329 43 352 6.76e-41 147
Msa0382310 AT3G21390.2 29.469 207 126 5 129 328 39 232 1.68e-19 88.6
Msa0382310 AT3G51870.1 30.743 296 168 4 46 335 102 366 1.09e-39 144
Msa0382310 AT3G51870.1 27.638 199 120 5 145 342 105 280 4.02e-14 73.2
Msa0382310 AT5G56450.1 30.380 316 183 7 31 329 30 325 1.41e-37 137
Msa0382310 AT5G48970.2 29.181 281 159 5 71 329 1 263 1.83e-37 135
Msa0382310 AT5G07320.1 29.452 292 161 8 44 326 218 473 2.55e-37 140
Msa0382310 AT5G07320.1 31.658 199 111 6 35 230 300 476 2.48e-17 83.2
Msa0382310 AT5G01500.1 30.795 302 166 6 46 338 130 397 1.13e-36 137
Msa0382310 AT5G01500.1 28.426 197 119 4 144 339 132 307 1.98e-15 77.4
Msa0382310 AT3G55640.2 31.624 234 129 5 34 254 37 252 1.38e-31 119
Msa0382310 AT3G55640.2 26.577 222 134 6 130 341 37 239 7.77e-15 73.9
Msa0382310 AT3G55640.3 31.624 234 129 5 34 254 37 252 1.38e-31 119
Msa0382310 AT3G55640.3 26.577 222 134 6 130 341 37 239 7.77e-15 73.9
Msa0382310 AT3G53940.2 33.054 239 123 7 32 254 70 287 3.01e-31 119
Msa0382310 AT3G53940.2 30.493 223 126 8 131 343 73 276 7.15e-16 77.4
Msa0382310 AT3G20240.1 26.814 317 179 8 33 326 50 336 6.11e-31 120
Msa0382310 AT2G47490.1 29.085 306 178 11 47 337 29 310 3.30e-29 114
Msa0382310 AT2G47490.1 29.897 194 119 5 138 330 24 201 2.25e-12 67.4
Msa0382310 AT5G13490.1 30.619 307 178 10 34 326 87 372 1.09e-26 109
Msa0382310 AT5G13490.2 30.619 307 178 10 34 326 87 372 1.09e-26 109
Msa0382310 AT1G25380.1 28.013 307 185 10 47 339 33 317 1.21e-26 108
Msa0382310 AT1G25380.2 28.013 307 185 10 47 339 33 317 1.21e-26 108
Msa0382310 AT5G64970.1 28.308 325 174 11 33 331 133 424 1.44e-26 109
Msa0382310 AT4G28390.1 30.968 310 178 11 31 326 79 366 1.72e-26 108
Msa0382310 AT4G28390.2 30.968 310 178 11 31 326 79 366 1.72e-26 108
Msa0382310 AT5G17400.1 30.503 318 167 12 31 325 10 296 5.03e-26 105
Msa0382310 AT3G08580.2 29.808 312 180 10 31 326 80 368 7.00e-26 107
Msa0382310 AT3G08580.1 29.808 312 180 10 31 326 80 368 7.00e-26 107
Msa0382310 AT5G64970.2 27.500 320 173 11 38 331 14 300 4.48e-24 100
Msa0382310 AT4G11440.1 29.114 316 185 10 39 343 330 617 5.86e-23 100
Msa0382310 AT4G11440.2 29.114 316 185 10 39 343 330 617 5.86e-23 100
Msa0382310 AT1G78180.1 28.528 326 172 11 33 331 126 417 1.13e-22 98.6
Msa0382310 AT5G66380.1 25.949 316 198 9 37 336 12 307 2.71e-20 90.1
Msa0382310 AT5G64970.3 27.547 265 140 9 32 270 132 370 3.27e-19 88.2
Msa0382310 AT5G46800.2 27.451 306 203 7 33 330 6 300 6.52e-19 86.3
Msa0382310 AT5G46800.3 27.451 306 203 7 33 330 6 300 6.52e-19 86.3
Msa0382310 AT5G46800.1 27.451 306 203 7 33 330 6 300 6.52e-19 86.3
Msa0382310 AT1G74240.1 25.740 338 227 7 2 326 7 333 7.19e-19 87.0
Msa0382310 AT1G14140.1 24.430 307 202 8 35 331 16 302 9.62e-19 85.9
Msa0382310 AT5G58970.1 25.325 308 194 9 31 326 12 295 1.01e-18 85.9
Msa0382310 AT2G39970.1 26.441 295 184 9 51 319 24 311 5.76e-15 75.1
Msa0382310 AT4G03115.1 22.222 324 215 7 15 331 18 311 8.21e-15 74.7
Msa0382310 AT2G30160.1 25.407 307 190 8 35 329 42 321 8.55e-15 74.7
Msa0382310 AT4G39460.2 25.672 335 195 10 1 329 25 311 1.03e-14 74.3
Msa0382310 AT4G39460.1 25.672 335 195 10 1 329 25 311 1.03e-14 74.3
Msa0382310 AT4G39460.3 25.672 335 195 10 1 329 25 311 1.03e-14 74.3
Msa0382310 AT4G03115.3 22.222 324 215 7 15 331 50 343 1.11e-14 74.7
Msa0382310 AT1G79900.1 26.071 280 168 9 51 324 32 278 1.43e-14 73.6
Msa0382310 AT2G33820.1 24.204 314 206 8 31 331 14 308 1.49e-14 73.9
Msa0382310 AT1G74240.2 26.316 266 179 4 71 326 27 285 1.58e-14 73.9
Msa0382310 AT1G34065.1 24.611 321 191 10 19 335 68 341 5.84e-14 72.4
Msa0382310 AT1G34065.1 28.019 207 124 6 32 237 160 342 2.53e-12 67.4
Msa0382310 AT1G34065.2 24.611 321 191 10 19 335 61 334 6.91e-14 72.0
Msa0382310 AT1G34065.2 27.273 209 123 5 32 237 153 335 2.62e-12 67.4
Msa0382310 AT5G42130.1 24.312 218 143 3 23 236 200 399 3.03e-13 70.5
Msa0382310 AT5G42130.1 27.143 280 172 7 48 322 131 383 1.31e-11 65.9
Msa0382310 AT4G03115.2 28.804 184 104 4 144 326 51 208 3.37e-13 68.6
Msa0382310 AT4G03115.4 28.877 187 106 4 144 329 51 211 4.70e-13 68.2
Msa0382310 AT4G03115.5 22.692 260 166 6 77 331 11 240 4.90e-13 68.6
Msa0382310 AT4G27940.1 24.910 277 176 9 66 326 144 404 5.21e-13 70.1
Msa0382310 AT1G07030.1 24.490 196 123 3 131 326 40 210 5.29e-13 69.3
Msa0382310 AT1G07030.1 25.081 307 188 8 35 329 40 316 1.21e-11 65.5
Msa0382310 AT4G03115.6 22.692 260 166 6 77 331 19 248 6.21e-13 68.2
Msa0382310 AT1G72820.1 24.013 304 180 7 57 326 49 335 7.57e-13 68.9
Msa0382310 AT1G72820.2 24.013 304 180 7 57 326 49 335 7.57e-13 68.9
Msa0382310 AT2G33820.3 23.602 322 206 9 31 331 14 316 4.97e-12 66.2
Msa0382310 AT3G54110.1 22.654 309 203 9 33 329 13 297 7.42e-12 65.9
Msa0382310 AT2G46320.1 24.528 265 164 9 77 326 109 352 4.78e-11 63.9

Find 137 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACTGTAAGTTTATATTATT+TGG 0.113461 3_1:-84770090 Msa0382310:three_prime_UTR
ACGAACTCCAGCTTCTTTAT+AGG 0.187276 3_1:+84772347 None:intergenic
AAAACGGTGGCGTTTAATTA+AGG 0.202110 3_1:+84774772 None:intergenic
TCATCAGGTCCAACCCTTAC+TGG 0.241628 3_1:-84771879 Msa0382310:intron
CCGTACCAAACTTGCTTATC+AGG 0.253158 3_1:-84773002 Msa0382310:intron
GGAGCTCTTGCTGGATTGTT+TGG 0.263281 3_1:-84771756 Msa0382310:CDS
CTTTCTTGTGGAGCTCTTGC+TGG 0.277059 3_1:-84771765 Msa0382310:CDS
ACTGTAAGTTTATATTATTT+GGG 0.278234 3_1:-84770089 Msa0382310:three_prime_UTR
TCTCTTTCCTTAGAAGTAGA+TGG 0.284343 3_1:-84774647 Msa0382310:five_prime_UTR
ATGCATGGTATTTGCTTGTT+TGG 0.303656 3_1:-84770029 Msa0382310:three_prime_UTR
TTAATTGCTGGTGGATTTGC+TGG 0.304100 3_1:-84774459 Msa0382310:CDS
CGTTATCCCATCTACTTCTA+AGG 0.310537 3_1:+84774640 None:intergenic
ATGGACTTCTGATGTTCTTC+AGG 0.313245 3_1:+84771798 None:intergenic
TTTGGTACGGGCAAGATCTA+AGG 0.328897 3_1:+84773015 None:intergenic
GGGTGGAGGCAGTTGTTTGC+AGG 0.333389 3_1:-84771603 Msa0382310:CDS
CTTTACCTGATAAGCAAGTT+TGG 0.338336 3_1:+84772997 None:intergenic
CCTGTACATAATGGCATTAA+AGG 0.342412 3_1:-84772384 Msa0382310:CDS
AAGTCTCGATCAGTTTCTTC+AGG 0.364975 3_1:-84770471 Msa0382310:CDS
GAGCTCTTGCTGGATTGTTT+GGG 0.366817 3_1:-84771755 Msa0382310:CDS
CTAACATGGGATAATTGTTC+AGG 0.368987 3_1:+84773107 None:intergenic
AGATTCTAGATTGGCTGGTT+TGG 0.369557 3_1:-84774547 Msa0382310:CDS
ATTAACTCCTTAACATAAAC+AGG 0.374841 3_1:+84774477 None:intergenic
ACCATCTTTGATACATCCTT+TGG 0.378479 3_1:+84772437 None:intergenic
AAACGGTGGCGTTTAATTAA+GGG 0.386691 3_1:+84774773 None:intergenic
TGGGCCTGTTTCTTCGCTTT+CGG 0.389392 3_1:+84774983 None:intergenic
AGCCTGCAAAATGGAGCTAA+TGG 0.389932 3_1:-84771681 Msa0382310:CDS
ACCGGTGGATTTCATAATCT+TGG 0.391806 3_1:-84773355 Msa0382310:CDS
CTGAACAATTATCCCATGTT+AGG 0.395653 3_1:-84773106 Msa0382310:CDS
AGGAAGATTGTTCGAAATCA+AGG 0.399175 3_1:-84771624 Msa0382310:CDS
TTCTGTTGCGCCTCTCGAAC+GGG 0.399548 3_1:-84774421 Msa0382310:CDS
TCGCGTTCCTGTTTATGTTA+AGG 0.399683 3_1:-84774484 Msa0382310:CDS
TTTGTTGATGAATTTGATTA+TGG 0.402515 3_1:+84774932 None:intergenic
GAGCTTCAAAGTGGATAGAT+TGG 0.403936 3_1:-84774609 Msa0382310:five_prime_UTR
TTTAATTAAGGGAGGAGAAC+GGG 0.406527 3_1:+84774784 None:intergenic
TTCATTATTTCTTAATCCTT+AGG 0.412799 3_1:-84770251 Msa0382310:three_prime_UTR
TTCTTCTCAAGATTCTAGAT+TGG 0.416611 3_1:-84774556 Msa0382310:CDS
ACTGGAATTCTTCCATATGC+TGG 0.417730 3_1:-84771861 Msa0382310:CDS
ATAAACCTAAAACCAAAGTT+AGG 0.418539 3_1:-84774837 Msa0382310:five_prime_UTR
GCGTAAGCATTAACTACATA+AGG 0.418832 3_1:-84771581 Msa0382310:CDS
AAAACCAAAGTTAGGAGAAC+GGG 0.420668 3_1:-84774829 Msa0382310:five_prime_UTR
TCTCAAGATTCTAGATTGGC+TGG 0.421380 3_1:-84774552 Msa0382310:CDS
TTCACTAGGATTAATATGTC+AGG 0.426068 3_1:-84770179 Msa0382310:three_prime_UTR
GCAGACTTTAACATACCCTT+TGG 0.432131 3_1:-84771733 Msa0382310:CDS
GAAACCCGTTCTCCTAACTT+TGG 0.438276 3_1:+84774825 None:intergenic
TTGTGAAGTGTGATATCATT+TGG 0.440521 3_1:-84770295 Msa0382310:three_prime_UTR
GAATGGCGTATACTCAGAAT+TGG 0.441268 3_1:+84774668 None:intergenic
TAGAACTTTAAACCAGCATA+TGG 0.441645 3_1:+84771849 None:intergenic
TATGTTAAGGAGTTAATTGC+TGG 0.446548 3_1:-84774471 Msa0382310:CDS
TGCATTCTAATTAGGCGTAC+AGG 0.447979 3_1:-84770137 Msa0382310:three_prime_UTR
AAAATACATTTGATGGGCTT+AGG 0.448754 3_1:-84771644 Msa0382310:CDS
CTCTTTCCTTAGAAGTAGAT+GGG 0.450157 3_1:-84774646 Msa0382310:five_prime_UTR
TTAAGAGACAAATGCAGGTT+GGG 0.457586 3_1:-84771704 Msa0382310:CDS
TTAGCAACTTATTCACAGAT+TGG 0.459764 3_1:+84773326 None:intergenic
AAGGGAGGAGAACGGGTTGG+AGG 0.471313 3_1:+84774791 None:intergenic
GGAGTTCGTGGGCTTTATAG+AGG 0.472787 3_1:-84772333 Msa0382310:CDS
CTTCTGTTGCGCCTCTCGAA+CGG 0.475440 3_1:-84774422 Msa0382310:CDS
CAGGTTGGGAGCCTGCAAAA+TGG 0.475469 3_1:-84771690 Msa0382310:CDS
ATTAAGGGAGGAGAACGGGT+TGG 0.483146 3_1:+84774788 None:intergenic
ATTCTGATGCGCCTTTCTTG+TGG 0.483627 3_1:-84771777 Msa0382310:CDS
CATATGAGCGGTATAAAAGT+TGG 0.484712 3_1:-84773132 Msa0382310:CDS
TGTGGTGGTTGCAGAGGTAA+TGG 0.490076 3_1:-84773202 Msa0382310:intron
AATTATCCCATGTTAGGAAC+GGG 0.491656 3_1:-84773100 Msa0382310:CDS
TAAGCCGAAAGCGAAGAAAC+AGG 0.492102 3_1:-84774987 Msa0382310:five_prime_UTR
CCTGATAAGCAAGTTTGGTA+CGG 0.500536 3_1:+84773002 None:intergenic
CAGCAAGAGCTCCACAAGAA+AGG 0.502227 3_1:+84771766 None:intergenic
TATAAAGAAGCTGGAGTTCG+TGG 0.504107 3_1:-84772345 Msa0382310:CDS
CCTGTAGGTCCTGTACATAA+TGG 0.505706 3_1:-84772393 Msa0382310:CDS
GTAATGGAGCTAGTGTTATC+CGG 0.505957 3_1:-84773186 Msa0382310:CDS
CTGATAAGCAAGTTTGGTAC+GGG 0.509585 3_1:+84773003 None:intergenic
CGTAAGCATTAACTACATAA+GGG 0.510324 3_1:-84771580 Msa0382310:intron
TCGAACGGGTTAAGATACTT+TGG 0.511447 3_1:-84774407 Msa0382310:CDS
CATATGGAAGAATTCCAGTA+AGG 0.512544 3_1:+84771865 None:intergenic
TATATTATTTGGGGAATGCA+AGG 0.513028 3_1:-84770079 Msa0382310:three_prime_UTR
CCTTTAATGCCATTATGTAC+AGG 0.518203 3_1:+84772384 None:intergenic
GTCTCTTAACAACATCCAAA+GGG 0.520837 3_1:+84771718 None:intergenic
CCATTATGTACAGGACCTAC+AGG 0.521264 3_1:+84772393 None:intergenic
CGTGGGCTTTATAGAGGTGT+AGG 0.521949 3_1:-84772327 Msa0382310:intron
AGAAGGACCCGTTCCTAACA+TGG 0.522339 3_1:+84773093 None:intergenic
ACAAGTGCCTATAAAGAAGC+TGG 0.523472 3_1:-84772354 Msa0382310:CDS
ACAAGAAAGGCGCATCAGAA+TGG 0.524845 3_1:+84771779 None:intergenic
ATAAAATGCAAGGCTGCGTA+TGG 0.526789 3_1:+84773157 None:intergenic
CACCACATATGACATGATGA+AGG 0.528465 3_1:-84770520 Msa0382310:CDS
AATAAGTTGCTAAAGCATGA+AGG 0.534112 3_1:-84773316 Msa0382310:CDS
ACTTATATTTACCGAGGGTG+CGG 0.534542 3_1:+84769985 None:intergenic
TGTCTCTTAACAACATCCAA+AGG 0.535374 3_1:+84771717 None:intergenic
ATCTACTGCCACCGCACCCT+CGG 0.535446 3_1:-84769996 Msa0382310:three_prime_UTR
GTTAAGGAGTTAATTGCTGG+TGG 0.536683 3_1:-84774468 Msa0382310:CDS
CCAGCTAAAAGATCGATAGA+AGG 0.537017 3_1:+84773076 None:intergenic
TGAAATCGGTGATCCTTCAA+AGG 0.538410 3_1:-84774750 Msa0382310:five_prime_UTR
CATATGACATGATGAAGGCT+TGG 0.542135 3_1:-84770515 Msa0382310:CDS
CTGTAAGTTTATATTATTTG+GGG 0.547194 3_1:-84770088 Msa0382310:three_prime_UTR
GTTAAGAGACAAATGCAGGT+TGG 0.547616 3_1:-84771705 Msa0382310:CDS
GGAAGATTGTTCGAAATCAA+GGG 0.550950 3_1:-84771623 Msa0382310:CDS
ACCAAAGGATGTATCAAAGA+TGG 0.551765 3_1:-84772438 Msa0382310:CDS
AAGGATCACCGATTTCAAAA+CGG 0.555000 3_1:+84774756 None:intergenic
CTACTTCTAAGGAAAGAGAA+TGG 0.559192 3_1:+84774651 None:intergenic
ACGGGTTAAGATACTTTGGC+AGG 0.560352 3_1:-84774403 Msa0382310:intron
GGAAGAATTCCAGTAAGGGT+TGG 0.561588 3_1:+84771870 None:intergenic
CTCATATGTCATAAAATGCA+AGG 0.566747 3_1:+84773147 None:intergenic
AAATGCAATACTATTTCACT+AGG 0.568079 3_1:-84770193 Msa0382310:three_prime_UTR
GTTTAATTAAGGGAGGAGAA+CGG 0.572508 3_1:+84774783 None:intergenic
ATATTATTTGGGGAATGCAA+GGG 0.572688 3_1:-84770078 Msa0382310:three_prime_UTR
AGCCTTCATCATGTCATATG+TGG 0.577415 3_1:+84770518 None:intergenic
CTGACGTGGGAGTTAACGAT+GGG 0.577728 3_1:+84774964 None:intergenic
TTGTTCGAAATCAAGGGTGG+AGG 0.579018 3_1:-84771617 Msa0382310:CDS
TTGGTACGGGCAAGATCTAA+GGG 0.579231 3_1:+84773016 None:intergenic
CAATTATCCCATGTTAGGAA+CGG 0.586032 3_1:-84773101 Msa0382310:CDS
TTTAGCTGGCTCAGCAGCAG+GGG 0.587262 3_1:-84773062 Msa0382310:CDS
ATATGGAAGAATTCCAGTAA+GGG 0.589360 3_1:+84771866 None:intergenic
GTATTGATTAATTATTCACA+AGG 0.592307 3_1:+84770328 None:intergenic
GTGAAACTAATTGCAGCTGA+TGG 0.596426 3_1:+84770540 None:intergenic
TATATTTACCGAGGGTGCGG+TGG 0.596708 3_1:+84769988 None:intergenic
GACATGATGAAGGCTTGGCT+TGG 0.597274 3_1:-84770510 Msa0382310:CDS
ATGGCGTATCTTTCTGACGT+GGG 0.600958 3_1:+84774951 None:intergenic
GCAGTTCATTCTCAACCTGT+AGG 0.601300 3_1:-84772408 Msa0382310:CDS
TCTGACGTGGGAGTTAACGA+TGG 0.601835 3_1:+84774963 None:intergenic
TTATAGGTGGTGGACACCAA+AGG 0.602285 3_1:-84772453 Msa0382310:intron
TAAAACCAAAGTTAGGAGAA+CGG 0.603962 3_1:-84774830 Msa0382310:five_prime_UTR
ATCTACGAGTTACATGCCTA+AGG 0.607911 3_1:+84770235 None:intergenic
ACCAAGATTATGAAATCCAC+CGG 0.612129 3_1:+84773354 None:intergenic
AGTATCTTAACCCGTTCGAG+AGG 0.612939 3_1:+84774411 None:intergenic
TTAGCTGGCTCAGCAGCAGG+GGG 0.614047 3_1:-84773061 Msa0382310:CDS
AGGCTGCGTATGGAACAATC+CGG 0.618289 3_1:+84773167 None:intergenic
GAAGGACCCGTTCCTAACAT+GGG 0.618969 3_1:+84773094 None:intergenic
TATGGCGTATCTTTCTGACG+TGG 0.623231 3_1:+84774950 None:intergenic
TGTTGTTAAGAGACAAATGC+AGG 0.624133 3_1:-84771709 Msa0382310:CDS
CGTCAACTTATATTTACCGA+GGG 0.624382 3_1:+84769980 None:intergenic
TATTGATTAATTATTCACAA+GGG 0.637270 3_1:+84770329 None:intergenic
ATAAAGAAGCTGGAGTTCGT+GGG 0.638356 3_1:-84772344 Msa0382310:CDS
TTTATGATCATGCTGATGCA+TGG 0.638732 3_1:-84770044 Msa0382310:three_prime_UTR
CGGTGGCGTTTAATTAAGGG+AGG 0.647745 3_1:+84774776 None:intergenic
ACGTCAACTTATATTTACCG+AGG 0.667237 3_1:+84769979 None:intergenic
AGATTGTTCGAAATCAAGGG+TGG 0.681478 3_1:-84771620 Msa0382310:CDS
GTATACAAAATATTAATCAG+AGG 0.685631 3_1:-84770354 Msa0382310:three_prime_UTR
TCGGTAAATATAAGTTGACG+TGG 0.716252 3_1:-84769977 Msa0382310:three_prime_UTR
GATCACCGATTTCAAAACGG+TGG 0.734682 3_1:+84774759 None:intergenic
AGGCGTACAGGAGTTTCACG+AGG 0.737566 3_1:-84770125 Msa0382310:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAATAAAAAATTATAA+TGG - chr3_1:84770390-84770409 Msa0382310:three_prime_UTR 0.0%
!! AAAAAACAAAAATAAAATGA+AGG + chr3_1:84771572-84771591 None:intergenic 10.0%
!!! TATAATTGATTTTCATAAAA+TGG - chr3_1:84773869-84773888 Msa0382310:intron 10.0%
!!! AAATATTTTTACAAAGTAAA+CGG + chr3_1:84774189-84774208 None:intergenic 10.0%
!!! ATTTTATATTTTTACAGACA+AGG - chr3_1:84771592-84771611 Msa0382310:CDS 15.0%
!! CAAAGTATATATGTATATAA+TGG + chr3_1:84772413-84772432 None:intergenic 15.0%
!! CATTATATACATATATACTT+TGG - chr3_1:84772411-84772430 Msa0382310:CDS 15.0%
!!! GTTTTTGTTTACAATTTTAT+AGG - chr3_1:84772501-84772520 Msa0382310:intron 15.0%
!! TAGTATAAGATTATATGATA+AGG + chr3_1:84773425-84773444 None:intergenic 15.0%
!! TTAAAATTAATGTTAAGATG+TGG - chr3_1:84773583-84773602 Msa0382310:intron 15.0%
!!! AATATTTTTACAAAGTAAAC+GGG + chr3_1:84774188-84774207 None:intergenic 15.0%
!!! TATTGATTAATTATTCACAA+GGG + chr3_1:84774644-84774663 None:intergenic 15.0%
!!! TATATTTTTGCATTCTAATT+AGG - chr3_1:84774825-84774844 Msa0382310:five_prime_UTR 15.0%
!! ACTGTAAGTTTATATTATTT+GGG - chr3_1:84774881-84774900 Msa0382310:five_prime_UTR 15.0%
!!! TTTGTTGATGAATTTGATTA+TGG + chr3_1:84770041-84770060 None:intergenic 20.0%
!!! GTTTTGTAGTAATAGTATTT+GGG + chr3_1:84770064-84770083 None:intergenic 20.0%
!! TGAATACATTCATTCATTAT+AGG + chr3_1:84770688-84770707 None:intergenic 20.0%
!! AGATATTTCCAATATAATAC+AGG + chr3_1:84770850-84770869 None:intergenic 20.0%
!! TATAATGTAACATCAAACAA+TGG + chr3_1:84771157-84771176 None:intergenic 20.0%
!!! TCCAAGACTATTTTTTAAAT+GGG - chr3_1:84771457-84771476 Msa0382310:intron 20.0%
!! AAATAAAATGAAGGTTAAAG+AGG + chr3_1:84771563-84771582 None:intergenic 20.0%
!! TTCATTACTGTATATGATAT+AGG + chr3_1:84772258-84772277 None:intergenic 20.0%
!! AAATGAAAATCAGAAACAAA+AGG + chr3_1:84772283-84772302 None:intergenic 20.0%
!! ATTAGTTGTGTGTAATAAAT+TGG - chr3_1:84772342-84772361 Msa0382310:CDS 20.0%
!! TATATACATATATACTTTGG+TGG - chr3_1:84772414-84772433 Msa0382310:CDS 20.0%
!!! TTTGTTTACAATTTTATAGG+TGG - chr3_1:84772504-84772523 Msa0382310:intron 20.0%
!! ATTATGATTGCCAAAAATAA+AGG + chr3_1:84772698-84772717 None:intergenic 20.0%
!!! TTATTTTTGGCAATCATAAT+TGG - chr3_1:84772698-84772717 Msa0382310:intron 20.0%
!! GTCAATATAAATAAAATTCC+AGG + chr3_1:84772837-84772856 None:intergenic 20.0%
!! AATGAATGTATTGAAAACAT+TGG + chr3_1:84773051-84773070 None:intergenic 20.0%
!!! ATCAAATGTATTTTTGTATG+CGG + chr3_1:84773320-84773339 None:intergenic 20.0%
!! CATACAAAAATACATTTGAT+GGG - chr3_1:84773320-84773339 Msa0382310:CDS 20.0%
!! ATAAAATGGCTTGAATAAAT+TGG - chr3_1:84773883-84773902 Msa0382310:intron 20.0%
!!! CATGCTTTTCAAAATTTAAA+TGG + chr3_1:84774143-84774162 None:intergenic 20.0%
!! AAGTTACAATAGAAAATTTC+AGG + chr3_1:84774310-84774329 None:intergenic 20.0%
!! GTATACAAAATATTAATCAG+AGG - chr3_1:84774616-84774635 Msa0382310:five_prime_UTR 20.0%
!!! GTATTGATTAATTATTCACA+AGG + chr3_1:84774645-84774664 None:intergenic 20.0%
!!! TTCATTATTTCTTAATCCTT+AGG - chr3_1:84774719-84774738 Msa0382310:five_prime_UTR 20.0%
!! GACTGTAAGTTTATATTATT+TGG - chr3_1:84774880-84774899 Msa0382310:five_prime_UTR 20.0%
!! CTGTAAGTTTATATTATTTG+GGG - chr3_1:84774882-84774901 Msa0382310:five_prime_UTR 20.0%
!! CGTTTTGTAGTAATAGTATT+TGG + chr3_1:84770065-84770084 None:intergenic 25.0%
! ATAAACCTAAAACCAAAGTT+AGG - chr3_1:84770133-84770152 Msa0382310:three_prime_UTR 25.0%
! ATTAACTCCTTAACATAAAC+AGG + chr3_1:84770496-84770515 None:intergenic 25.0%
!! TTGATTTTCATCTGATTGTT+TGG - chr3_1:84770623-84770642 Msa0382310:intron 25.0%
! ATCTTCATCCTGTATTATAT+TGG - chr3_1:84770839-84770858 Msa0382310:intron 25.0%
! GTTACATTATACATAATCGA+TGG - chr3_1:84771166-84771185 Msa0382310:intron 25.0%
! TTTAATGCAATTGACAACAA+TGG - chr3_1:84771433-84771452 Msa0382310:intron 25.0%
!!! CTCCAAGACTATTTTTTAAA+TGG - chr3_1:84771456-84771475 Msa0382310:intron 25.0%
! ACCCATTTAAAAAATAGTCT+TGG + chr3_1:84771461-84771480 None:intergenic 25.0%
! AAGGATTGAAATATGGTTAA+AGG + chr3_1:84772003-84772022 None:intergenic 25.0%
! ATGTTTCAAGGATTGAAATA+TGG + chr3_1:84772010-84772029 None:intergenic 25.0%
! TGTATGTATTACATGTTTCA+AGG + chr3_1:84772022-84772041 None:intergenic 25.0%
! TCGTTTGAATTTCAACTAAT+AGG - chr3_1:84772185-84772204 Msa0382310:intron 25.0%
!!! ACCAATACAACCTTTATTTT+TGG - chr3_1:84772685-84772704 Msa0382310:intron 25.0%
! TTCTTGTTGGATAATTATGT+TGG - chr3_1:84772721-84772740 Msa0382310:intron 25.0%
! ATTTCCTAGGAATTCATTTA+GGG + chr3_1:84772924-84772943 None:intergenic 25.0%
! TATTTCCTAGGAATTCATTT+AGG + chr3_1:84772925-84772944 None:intergenic 25.0%
!! AGTATCTTAAGTTATTTCCT+AGG + chr3_1:84772937-84772956 None:intergenic 25.0%
! GCATACAAAAATACATTTGA+TGG - chr3_1:84773319-84773338 Msa0382310:CDS 25.0%
!!! TGTTTCAAGTTTGAGTTTAA+AGG - chr3_1:84773471-84773490 Msa0382310:intron 25.0%
! CAGAATGATAGATTCTTATT+GGG + chr3_1:84773534-84773553 None:intergenic 25.0%
! TCAGAATGATAGATTCTTAT+TGG + chr3_1:84773535-84773554 None:intergenic 25.0%
! TTAAGATTTCGTTACAAGAT+TGG + chr3_1:84773567-84773586 None:intergenic 25.0%
!! TAGTGTAAAACTGATTTACT+TGG - chr3_1:84773632-84773651 Msa0382310:intron 25.0%
!! TTCTCTTGTTCACTAAATTT+TGG - chr3_1:84773772-84773791 Msa0382310:intron 25.0%
!! TCTCTTGTTCACTAAATTTT+GGG - chr3_1:84773773-84773792 Msa0382310:intron 25.0%
! TCATTAGTCATATGGTTTAA+AGG + chr3_1:84774028-84774047 None:intergenic 25.0%
! AAACCATTAATTTCAATCCT+TGG + chr3_1:84774052-84774071 None:intergenic 25.0%
! TGTCCATATTATATATCCTT+TGG - chr3_1:84774161-84774180 Msa0382310:intron 25.0%
!! AGTTTCTTCAGGATAATTTT+TGG - chr3_1:84774510-84774529 Msa0382310:CDS 25.0%
! AAATGCAATACTATTTCACT+AGG - chr3_1:84774777-84774796 Msa0382310:five_prime_UTR 25.0%
TAAAACCAAAGTTAGGAGAA+CGG - chr3_1:84770140-84770159 Msa0382310:three_prime_UTR 30.0%
!! TGATTTTCTCTGATTCGAAT+TGG - chr3_1:84770266-84770285 Msa0382310:three_prime_UTR 30.0%
TTCTTCTCAAGATTCTAGAT+TGG - chr3_1:84770414-84770433 Msa0382310:three_prime_UTR 30.0%
TATGTTAAGGAGTTAATTGC+TGG - chr3_1:84770499-84770518 Msa0382310:CDS 30.0%
ATTATAGGCGAACAATACAT+TGG + chr3_1:84770673-84770692 None:intergenic 30.0%
TGGATCATGTAATTCTTTGA+TGG - chr3_1:84770899-84770918 Msa0382310:intron 30.0%
ACTTTGGTAAATGGAATTTC+TGG - chr3_1:84770928-84770947 Msa0382310:intron 30.0%
CTTTGGTAAATGGAATTTCT+GGG - chr3_1:84770929-84770948 Msa0382310:intron 30.0%
TTTGGTAAATGGAATTTCTG+GGG - chr3_1:84770930-84770949 Msa0382310:intron 30.0%
! TTCTGGGGAACATATAATAA+AGG - chr3_1:84770945-84770964 Msa0382310:intron 30.0%
ATTACAAGGATTGCAAAATC+AGG + chr3_1:84771087-84771106 None:intergenic 30.0%
GGAGAAATAAACGTTAAAAC+AGG + chr3_1:84771136-84771155 None:intergenic 30.0%
ACATTATACATAATCGATGG+TGG - chr3_1:84771169-84771188 Msa0382310:intron 30.0%
TCAATATTCCACTAAGCTAT+AGG + chr3_1:84771251-84771270 None:intergenic 30.0%
TTTAACACGATTGACAACAA+TGG - chr3_1:84771390-84771409 Msa0382310:intron 30.0%
!! ATATTTTTACAGACAAGGAC+CGG - chr3_1:84771597-84771616 Msa0382310:CDS 30.0%
TTAGCAACTTATTCACAGAT+TGG + chr3_1:84771647-84771666 None:intergenic 30.0%
AATAAGTTGCTAAAGCATGA+AGG - chr3_1:84771654-84771673 Msa0382310:CDS 30.0%
CTCATATGTCATAAAATGCA+AGG + chr3_1:84771826-84771845 None:intergenic 30.0%
! TGCATTTTATGACATATGAG+CGG - chr3_1:84771826-84771845 Msa0382310:CDS 30.0%
TCCAATATACTATCTTGCAT+TGG - chr3_1:84772087-84772106 Msa0382310:intron 30.0%
CCAATATACTATCTTGCATT+GGG - chr3_1:84772088-84772107 Msa0382310:intron 30.0%
TGTGATCAATACCATTTAGT+GGG - chr3_1:84772140-84772159 Msa0382310:intron 30.0%
ATAGTGCTAGAATTGCAATT+TGG + chr3_1:84772324-84772343 None:intergenic 30.0%
! GTTTACAATTTTATAGGTGG+TGG - chr3_1:84772507-84772526 Msa0382310:intron 30.0%
GCCAAAAATAAAGGTTGTAT+TGG + chr3_1:84772689-84772708 None:intergenic 30.0%
! CAATCATAATTGGTTCTTGT+TGG - chr3_1:84772708-84772727 Msa0382310:intron 30.0%
! TATGTTGGAATTCTTGTTTG+TGG - chr3_1:84772736-84772755 Msa0382310:intron 30.0%
ACTTCAAAACAGGAGTTATA+TGG + chr3_1:84772773-84772792 None:intergenic 30.0%
! GTTGTGGATTACTAGATAAA+AGG - chr3_1:84772791-84772810 Msa0382310:intron 30.0%
GAGAGAAAATAATAAGAACC+TGG - chr3_1:84772816-84772835 Msa0382310:intron 30.0%
ATCCTTATAAACAGGGATTA+GGG + chr3_1:84772889-84772908 None:intergenic 30.0%
TATCCTTATAAACAGGGATT+AGG + chr3_1:84772890-84772909 None:intergenic 30.0%
CCAATGTATCCTTATAAACA+GGG + chr3_1:84772896-84772915 None:intergenic 30.0%
ACCAATGTATCCTTATAAAC+AGG + chr3_1:84772897-84772916 None:intergenic 30.0%
! AGCTAAGGTATGCTTTTATT+AGG + chr3_1:84773001-84773020 None:intergenic 30.0%
AATGCAAGAAATGATAGCTA+AGG + chr3_1:84773016-84773035 None:intergenic 30.0%
ATATGGAAGAATTCCAGTAA+GGG + chr3_1:84773107-84773126 None:intergenic 30.0%
TAGAACTTTAAACCAGCATA+TGG + chr3_1:84773124-84773143 None:intergenic 30.0%
!! AAAATACATTTGATGGGCTT+AGG - chr3_1:84773326-84773345 Msa0382310:CDS 30.0%
CGTAAGCATTAACTACATAA+GGG - chr3_1:84773390-84773409 Msa0382310:intron 30.0%
TGAGTTTAAAGGAGATTTAC+TGG - chr3_1:84773482-84773501 Msa0382310:intron 30.0%
GCACAATATAAGATTCTCAT+TGG - chr3_1:84773605-84773624 Msa0382310:intron 30.0%
ACCAAAACTTGAAGAGATTA+GGG + chr3_1:84773670-84773689 None:intergenic 30.0%
TACCAAAACTTGAAGAGATT+AGG + chr3_1:84773671-84773690 None:intergenic 30.0%
ATGGCTTGAATAAATTGGAT+TGG - chr3_1:84773888-84773907 Msa0382310:intron 30.0%
TTGATGTCATTGTATTACAG+TGG - chr3_1:84773914-84773933 Msa0382310:intron 30.0%
TATTACAGTGGTAGATAGAT+AGG - chr3_1:84773926-84773945 Msa0382310:intron 30.0%
GAGTGAACATTTCATAGATA+TGG - chr3_1:84773948-84773967 Msa0382310:intron 30.0%
ACTGGATAAATGATGCATAT+TGG - chr3_1:84774109-84774128 Msa0382310:intron 30.0%
GGTCCAAAGGATATATAATA+TGG + chr3_1:84774167-84774186 None:intergenic 30.0%
TCAAGAGTTTCTCATCTTAT+TGG + chr3_1:84774252-84774271 None:intergenic 30.0%
AAGATTCCTAATCATTTCCT+TGG - chr3_1:84774340-84774359 Msa0382310:intron 30.0%
TGTAAAAATGAAGTCAGTCA+CGG + chr3_1:84774562-84774581 None:intergenic 30.0%
!! TGACTGACTTCATTTTTACA+GGG - chr3_1:84774562-84774581 Msa0382310:CDS 30.0%
TTGTGAAGTGTGATATCATT+TGG - chr3_1:84774675-84774694 Msa0382310:five_prime_UTR 30.0%
TTCACTAGGATTAATATGTC+AGG - chr3_1:84774791-84774810 Msa0382310:five_prime_UTR 30.0%
TATATTATTTGGGGAATGCA+AGG - chr3_1:84774891-84774910 Msa0382310:five_prime_UTR 30.0%
ATATTATTTGGGGAATGCAA+GGG - chr3_1:84774892-84774911 Msa0382310:five_prime_UTR 30.0%
!!! GTTCTCCTAACTTTGGTTTT+AGG + chr3_1:84770141-84770160 None:intergenic 35.0%
AAAACCAAAGTTAGGAGAAC+GGG - chr3_1:84770141-84770160 Msa0382310:three_prime_UTR 35.0%
TTTAATTAAGGGAGGAGAAC+GGG + chr3_1:84770189-84770208 None:intergenic 35.0%
GTTTAATTAAGGGAGGAGAA+CGG + chr3_1:84770190-84770209 None:intergenic 35.0%
AAACGGTGGCGTTTAATTAA+GGG + chr3_1:84770200-84770219 None:intergenic 35.0%
AAAACGGTGGCGTTTAATTA+AGG + chr3_1:84770201-84770220 None:intergenic 35.0%
!! AAGGATCACCGATTTCAAAA+CGG + chr3_1:84770217-84770236 None:intergenic 35.0%
CAACACAAAAAAGCCTTTGA+AGG + chr3_1:84770236-84770255 None:intergenic 35.0%
! CTACTTCTAAGGAAAGAGAA+TGG + chr3_1:84770322-84770341 None:intergenic 35.0%
TCTCTTTCCTTAGAAGTAGA+TGG - chr3_1:84770323-84770342 Msa0382310:three_prime_UTR 35.0%
CTCTTTCCTTAGAAGTAGAT+GGG - chr3_1:84770324-84770343 Msa0382310:three_prime_UTR 35.0%
ATATCTCTGAGTTACTTGCT+TGG - chr3_1:84770864-84770883 Msa0382310:intron 35.0%
TTGCTTGGAAATGATCGAAA+TGG - chr3_1:84770879-84770898 Msa0382310:intron 35.0%
!! TCTTTGATGGATTTCGACTT+TGG - chr3_1:84770912-84770931 Msa0382310:intron 35.0%
TGGATTTCGACTTTGGTAAA+TGG - chr3_1:84770919-84770938 Msa0382310:intron 35.0%
GAACATATAATAAAGGAGCG+AGG - chr3_1:84770952-84770971 Msa0382310:intron 35.0%
TAATAAAGGAGCGAGGATTT+AGG - chr3_1:84770959-84770978 Msa0382310:intron 35.0%
GGATTTATGTTGTGATGCTA+TGG - chr3_1:84771006-84771025 Msa0382310:intron 35.0%
!! TTTCTGCTCCTTGATTTGTA+TGG - chr3_1:84771038-84771057 Msa0382310:intron 35.0%
TCGATGTGTGGAAAATTACA+AGG + chr3_1:84771101-84771120 None:intergenic 35.0%
TACAATGCTTGGAGTAAACA+AGG + chr3_1:84771211-84771230 None:intergenic 35.0%
ACCAAGATTATGAAATCCAC+CGG + chr3_1:84771619-84771638 None:intergenic 35.0%
! CTAAAGCATGAAGGTTTTCT+AGG - chr3_1:84771663-84771682 Msa0382310:CDS 35.0%
CATATGAGCGGTATAAAAGT+TGG - chr3_1:84771838-84771857 Msa0382310:CDS 35.0%
CTAACATGGGATAATTGTTC+AGG + chr3_1:84771866-84771885 None:intergenic 35.0%
CTGAACAATTATCCCATGTT+AGG - chr3_1:84771864-84771883 Msa0382310:CDS 35.0%
CAATTATCCCATGTTAGGAA+CGG - chr3_1:84771869-84771888 Msa0382310:CDS 35.0%
AATTATCCCATGTTAGGAAC+GGG - chr3_1:84771870-84771889 Msa0382310:CDS 35.0%
CTTTACCTGATAAGCAAGTT+TGG + chr3_1:84771976-84771995 None:intergenic 35.0%
CATGCTACAATGTCTCATAT+AGG + chr3_1:84772050-84772069 None:intergenic 35.0%
CCCAATGCAAGATAGTATAT+TGG + chr3_1:84772091-84772110 None:intergenic 35.0%
GTGTGATCAATACCATTTAG+TGG - chr3_1:84772139-84772158 Msa0382310:intron 35.0%
! ATAGGAGAGCGTATTGAAAA+AGG - chr3_1:84772203-84772222 Msa0382310:intron 35.0%
!! AGCGTATTGAAAAAGGTGTT+GGG - chr3_1:84772210-84772229 Msa0382310:intron 35.0%
TTCCATTGTATGAACGTATG+AGG - chr3_1:84772370-84772389 Msa0382310:CDS 35.0%
!! ACATATATACTTTGGTGGTG+AGG - chr3_1:84772419-84772438 Msa0382310:CDS 35.0%
!! CATATATACTTTGGTGGTGA+GGG - chr3_1:84772420-84772439 Msa0382310:CDS 35.0%
!! ATATATACTTTGGTGGTGAG+GGG - chr3_1:84772421-84772440 Msa0382310:CDS 35.0%
ACCAAAGGATGTATCAAAGA+TGG - chr3_1:84772532-84772551 Msa0382310:intron 35.0%
ACCATCTTTGATACATCCTT+TGG + chr3_1:84772536-84772555 None:intergenic 35.0%
CCTTTAATGCCATTATGTAC+AGG + chr3_1:84772589-84772608 None:intergenic 35.0%
CCTGTACATAATGGCATTAA+AGG - chr3_1:84772586-84772605 Msa0382310:intron 35.0%
! AAGGTTGTATTGGTAGATTC+CGG + chr3_1:84772679-84772698 None:intergenic 35.0%
!!! TAACTCCTGTTTTGAAGTTG+TGG - chr3_1:84772775-84772794 Msa0382310:intron 35.0%
GTAATCCACAACTTCAAAAC+AGG + chr3_1:84772783-84772802 None:intergenic 35.0%
AACCCTAATCCCTGTTTATA+AGG - chr3_1:84772884-84772903 Msa0382310:intron 35.0%
CCCTGTTTATAAGGATACAT+TGG - chr3_1:84772893-84772912 Msa0382310:intron 35.0%
TCAACCCTAAATGAATTCCT+AGG - chr3_1:84772917-84772936 Msa0382310:intron 35.0%
CATATGGAAGAATTCCAGTA+AGG + chr3_1:84773108-84773127 None:intergenic 35.0%
GTCTCTTAACAACATCCAAA+GGG + chr3_1:84773255-84773274 None:intergenic 35.0%
TGTCTCTTAACAACATCCAA+AGG + chr3_1:84773256-84773275 None:intergenic 35.0%
TGTTGTTAAGAGACAAATGC+AGG - chr3_1:84773261-84773280 Msa0382310:intron 35.0%
TTAAGAGACAAATGCAGGTT+GGG - chr3_1:84773266-84773285 Msa0382310:intron 35.0%
AGGAAGATTGTTCGAAATCA+AGG - chr3_1:84773346-84773365 Msa0382310:CDS 35.0%
GGAAGATTGTTCGAAATCAA+GGG - chr3_1:84773347-84773366 Msa0382310:CDS 35.0%
GCGTAAGCATTAACTACATA+AGG - chr3_1:84773389-84773408 Msa0382310:intron 35.0%
CAAAACTTGAAGAGATTAGG+GGG + chr3_1:84773668-84773687 None:intergenic 35.0%
CCAAAACTTGAAGAGATTAG+GGG + chr3_1:84773669-84773688 None:intergenic 35.0%
! GAACCTAGAAAGTGTACTTT+AGG + chr3_1:84773729-84773748 None:intergenic 35.0%
CATAGATATGGCAAGTTAAC+TGG - chr3_1:84773960-84773979 Msa0382310:intron 35.0%
GAGCCAAGGATTGAAATTAA+TGG - chr3_1:84774046-84774065 Msa0382310:intron 35.0%
CTTTCTCAAACTTCAGAAAC+TGG - chr3_1:84774091-84774110 Msa0382310:intron 35.0%
! TGTCTTCCTTATGTTTTGTC+TGG - chr3_1:84774282-84774301 Msa0382310:intron 35.0%
ATTCCTAATCATTTCCTTGG+AGG - chr3_1:84774343-84774362 Msa0382310:intron 35.0%
GAGGCAACTATGTATTAGTT+TGG - chr3_1:84774362-84774381 Msa0382310:intron 35.0%
! ACTATGTATTAGTTTGGCTC+TGG - chr3_1:84774368-84774387 Msa0382310:intron 35.0%
!! GTGACTGACTTCATTTTTAC+AGG - chr3_1:84774561-84774580 Msa0382310:CDS 35.0%
! TTTTGTATACGTCGTAAGCA+GGG + chr3_1:84774606-84774625 None:intergenic 35.0%
! ATTTTGTATACGTCGTAAGC+AGG + chr3_1:84774607-84774626 None:intergenic 35.0%
TTTATGATCATGCTGATGCA+TGG - chr3_1:84774926-84774945 Msa0382310:five_prime_UTR 35.0%
ATGCATGGTATTTGCTTGTT+TGG - chr3_1:84774941-84774960 Msa0382310:five_prime_UTR 35.0%
CGTCAACTTATATTTACCGA+GGG + chr3_1:84774993-84775012 None:intergenic 35.0%
ACGTCAACTTATATTTACCG+AGG + chr3_1:84774994-84775013 None:intergenic 35.0%
! TCGGTAAATATAAGTTGACG+TGG - chr3_1:84774993-84775012 Msa0382310:five_prime_UTR 35.0%
!!! AAACGCCACCGTTTTGAAAT+CGG - chr3_1:84770206-84770225 Msa0382310:three_prime_UTR 40.0%
TGAAATCGGTGATCCTTCAA+AGG - chr3_1:84770220-84770239 Msa0382310:three_prime_UTR 40.0%
GAATGGCGTATACTCAGAAT+TGG + chr3_1:84770305-84770324 None:intergenic 40.0%
CGTTATCCCATCTACTTCTA+AGG + chr3_1:84770333-84770352 None:intergenic 40.0%
! GAGTTTTCTGAGCTTCAAAG+TGG - chr3_1:84770352-84770371 Msa0382310:three_prime_UTR 40.0%
GAGCTTCAAAGTGGATAGAT+TGG - chr3_1:84770361-84770380 Msa0382310:three_prime_UTR 40.0%
TCTCAAGATTCTAGATTGGC+TGG - chr3_1:84770418-84770437 Msa0382310:three_prime_UTR 40.0%
! AGATTCTAGATTGGCTGGTT+TGG - chr3_1:84770423-84770442 Msa0382310:three_prime_UTR 40.0%
TCGCGTTCCTGTTTATGTTA+AGG - chr3_1:84770486-84770505 Msa0382310:CDS 40.0%
GTTAAGGAGTTAATTGCTGG+TGG - chr3_1:84770502-84770521 Msa0382310:CDS 40.0%
!! TTAATTGCTGGTGGATTTGC+TGG - chr3_1:84770511-84770530 Msa0382310:CDS 40.0%
!! TCGAACGGGTTAAGATACTT+TGG - chr3_1:84770563-84770582 Msa0382310:intron 40.0%
GATTAGCGTGATAGGTTATG+CGG + chr3_1:84770777-84770796 None:intergenic 40.0%
AGCAAGAGCCATACAAATCA+AGG + chr3_1:84771049-84771068 None:intergenic 40.0%
!! TTGATTTGTATGGCTCTTGC+TGG - chr3_1:84771048-84771067 Msa0382310:intron 40.0%
CTTGGAGTAAACAAGGAACA+AGG + chr3_1:84771204-84771223 None:intergenic 40.0%
CCATACTTGACTACAATGCT+TGG + chr3_1:84771222-84771241 None:intergenic 40.0%
! CCAAGCATTGTAGTCAAGTA+TGG - chr3_1:84771219-84771238 Msa0382310:intron 40.0%
ACTATAGAACGCCGTAAAGA+GGG + chr3_1:84771490-84771509 None:intergenic 40.0%
! ACCGGTGGATTTCATAATCT+TGG - chr3_1:84771615-84771634 Msa0382310:CDS 40.0%
CCACATTAGCATAGGTTAAC+AGG + chr3_1:84771753-84771772 None:intergenic 40.0%
CCTGTTAACCTATGCTAATG+TGG - chr3_1:84771750-84771769 Msa0382310:CDS 40.0%
GTTAACCTATGCTAATGTGG+TGG - chr3_1:84771753-84771772 Msa0382310:CDS 40.0%
! GTAATGGAGCTAGTGTTATC+CGG - chr3_1:84771784-84771803 Msa0382310:CDS 40.0%
ATAAAATGCAAGGCTGCGTA+TGG + chr3_1:84771816-84771835 None:intergenic 40.0%
CCAGCTAAAAGATCGATAGA+AGG + chr3_1:84771897-84771916 None:intergenic 40.0%
! CCTTCTATCGATCTTTTAGC+TGG - chr3_1:84771894-84771913 Msa0382310:intron 40.0%
CTGATAAGCAAGTTTGGTAC+GGG + chr3_1:84771970-84771989 None:intergenic 40.0%
CCTGATAAGCAAGTTTGGTA+CGG + chr3_1:84771971-84771990 None:intergenic 40.0%
!! GGACCTGCTCTAAAATAGTT+AGG - chr3_1:84772161-84772180 Msa0382310:intron 40.0%
!!! GAGCCTAACTATTTTAGAGC+AGG + chr3_1:84772167-84772186 None:intergenic 40.0%
! GAGCGTATTGAAAAAGGTGT+TGG - chr3_1:84772209-84772228 Msa0382310:intron 40.0%
CACCTCATACGTTCATACAA+TGG + chr3_1:84772375-84772394 None:intergenic 40.0%
!! TATATACTTTGGTGGTGAGG+GGG - chr3_1:84772422-84772441 Msa0382310:CDS 40.0%
ACAAGTGCCTATAAAGAAGC+TGG - chr3_1:84772616-84772635 Msa0382310:intron 40.0%
ACGAACTCCAGCTTCTTTAT+AGG + chr3_1:84772626-84772645 None:intergenic 40.0%
TATAAAGAAGCTGGAGTTCG+TGG - chr3_1:84772625-84772644 Msa0382310:intron 40.0%
ATAAAGAAGCTGGAGTTCGT+GGG - chr3_1:84772626-84772645 Msa0382310:intron 40.0%
! AGGTTGTATTGGTAGATTCC+GGG + chr3_1:84772678-84772697 None:intergenic 40.0%
TTGGACCTGATGAAAGAGAA+AGG + chr3_1:84773084-84773103 None:intergenic 40.0%
ACTGGAATTCTTCCATATGC+TGG - chr3_1:84773109-84773128 Msa0382310:CDS 40.0%
ATGGACTTCTGATGTTCTTC+AGG + chr3_1:84773175-84773194 None:intergenic 40.0%
GCAGACTTTAACATACCCTT+TGG - chr3_1:84773237-84773256 Msa0382310:intron 40.0%
GTTAAGAGACAAATGCAGGT+TGG - chr3_1:84773265-84773284 Msa0382310:intron 40.0%
AGATTGTTCGAAATCAAGGG+TGG - chr3_1:84773350-84773369 Msa0382310:CDS 40.0%
!! CCCCTAATCTCTTCAAGTTT+TGG - chr3_1:84773666-84773685 Msa0382310:intron 40.0%
! CCTAGAAAGTGTACTTTAGG+CGG + chr3_1:84773726-84773745 None:intergenic 40.0%
AGTACACTTTCTAGGTTCTG+TGG - chr3_1:84773731-84773750 Msa0382310:intron 40.0%
GTGAACAAGAGAAATGACAC+TGG + chr3_1:84773765-84773784 None:intergenic 40.0%
TAACACACTGCTCTGTTGTT+TGG - chr3_1:84773822-84773841 Msa0382310:intron 40.0%
! AACACACTGCTCTGTTGTTT+GGG - chr3_1:84773823-84773842 Msa0382310:intron 40.0%
TGCAGAGATTCAAGAAAGCT+TGG - chr3_1:84774001-84774020 Msa0382310:intron 40.0%
ACCATATGACTAATGAGCCA+AGG - chr3_1:84774032-84774051 Msa0382310:intron 40.0%
TCCTTGGCTCATTAGTCATA+TGG + chr3_1:84774036-84774055 None:intergenic 40.0%
TACAAAGTAAACGGGTCCAA+AGG + chr3_1:84774180-84774199 None:intergenic 40.0%
CAGGAACCAGACAAAACATA+AGG + chr3_1:84774291-84774310 None:intergenic 40.0%
TTGCCTCCAAGGAAATGATT+AGG + chr3_1:84774349-84774368 None:intergenic 40.0%
CTAATACATAGTTGCCTCCA+AGG + chr3_1:84774360-84774379 None:intergenic 40.0%
AGAGCAAGGGATGTTAAGAA+TGG + chr3_1:84774396-84774415 None:intergenic 40.0%
ACAATCTGGAAACAGAGCAA+GGG + chr3_1:84774409-84774428 None:intergenic 40.0%
AACAATCTGGAAACAGAGCA+AGG + chr3_1:84774410-84774429 None:intergenic 40.0%
GTGAAACTAATTGCAGCTGA+TGG + chr3_1:84774433-84774452 None:intergenic 40.0%
! ACTGATCGAGACTTTTGTTG+AGG + chr3_1:84774493-84774512 None:intergenic 40.0%
AAGTCTCGATCAGTTTCTTC+AGG - chr3_1:84774499-84774518 Msa0382310:CDS 40.0%
!!! TTTTTGGTGCTCACTTGTGA+TGG - chr3_1:84774526-84774545 Msa0382310:CDS 40.0%
ATCTACGAGTTACATGCCTA+AGG + chr3_1:84774738-84774757 None:intergenic 40.0%
TGCATTCTAATTAGGCGTAC+AGG - chr3_1:84774833-84774852 Msa0382310:five_prime_UTR 40.0%
ACTTATATTTACCGAGGGTG+CGG + chr3_1:84774988-84775007 None:intergenic 40.0%
TAAGCCGAAAGCGAAGAAAC+AGG - chr3_1:84769983-84770002 Msa0382310:three_prime_UTR 45.0%
ATGGCGTATCTTTCTGACGT+GGG + chr3_1:84770022-84770041 None:intergenic 45.0%
TATGGCGTATCTTTCTGACG+TGG + chr3_1:84770023-84770042 None:intergenic 45.0%
GAAACCCGTTCTCCTAACTT+TGG + chr3_1:84770148-84770167 None:intergenic 45.0%
!! GATCACCGATTTCAAAACGG+TGG + chr3_1:84770214-84770233 None:intergenic 45.0%
AGTATCTTAACCCGTTCGAG+AGG + chr3_1:84770562-84770581 None:intergenic 45.0%
! ACGGGTTAAGATACTTTGGC+AGG - chr3_1:84770567-84770586 Msa0382310:intron 45.0%
!! GTTGCGTTGATTAGCGTGAT+AGG + chr3_1:84770785-84770804 None:intergenic 45.0%
CAATAAGCTCACTCGATGTG+TGG + chr3_1:84771113-84771132 None:intergenic 45.0%
GGCTATAGCCTATAGCTTAG+TGG - chr3_1:84771240-84771259 Msa0382310:intron 45.0%
!! TAGTGCAAAGTGCTGTCAAG+TGG - chr3_1:84771302-84771321 Msa0382310:intron 45.0%
TGGGTGTATGACCCTCTTTA+CGG - chr3_1:84771476-84771495 Msa0382310:intron 45.0%
CACTATAGAACGCCGTAAAG+AGG + chr3_1:84771491-84771510 None:intergenic 45.0%
! TTTTTACAGACAAGGACCGG+TGG - chr3_1:84771600-84771619 Msa0382310:CDS 45.0%
TGCAACCACCACATTAGCAT+AGG + chr3_1:84771761-84771780 None:intergenic 45.0%
TTGGTACGGGCAAGATCTAA+GGG + chr3_1:84771957-84771976 None:intergenic 45.0%
TTTGGTACGGGCAAGATCTA+AGG + chr3_1:84771958-84771977 None:intergenic 45.0%
! CCGTACCAAACTTGCTTATC+AGG - chr3_1:84771968-84771987 Msa0382310:intron 45.0%
TTAGAGCAGGTCCCACTAAA+TGG + chr3_1:84772154-84772173 None:intergenic 45.0%
!! TTATAGGTGGTGGACACCAA+AGG - chr3_1:84772517-84772536 Msa0382310:intron 45.0%
GCAGTTCATTCTCAACCTGT+AGG - chr3_1:84772562-84772581 Msa0382310:intron 45.0%
CCATTATGTACAGGACCTAC+AGG + chr3_1:84772580-84772599 None:intergenic 45.0%
CCTGTAGGTCCTGTACATAA+TGG - chr3_1:84772577-84772596 Msa0382310:intron 45.0%
AGGTGTAGGTATGTATGTCC+CGG - chr3_1:84772657-84772676 Msa0382310:intron 45.0%
CCTGATGAAAGAGAAAGGTG+AGG + chr3_1:84773079-84773098 None:intergenic 45.0%
CCTCACCTTTCTCTTTCATC+AGG - chr3_1:84773076-84773095 Msa0382310:CDS 45.0%
GGAAGAATTCCAGTAAGGGT+TGG + chr3_1:84773103-84773122 None:intergenic 45.0%
! ACAAGAAAGGCGCATCAGAA+TGG + chr3_1:84773194-84773213 None:intergenic 45.0%
ATTCTGATGCGCCTTTCTTG+TGG - chr3_1:84773193-84773212 Msa0382310:intron 45.0%
GAGCTCTTGCTGGATTGTTT+GGG - chr3_1:84773215-84773234 Msa0382310:intron 45.0%
AGCCTGCAAAATGGAGCTAA+TGG - chr3_1:84773289-84773308 Msa0382310:intron 45.0%
! CTCCATTAGCTCCATTTTGC+AGG + chr3_1:84773294-84773313 None:intergenic 45.0%
TTGTTCGAAATCAAGGGTGG+AGG - chr3_1:84773353-84773372 Msa0382310:CDS 45.0%
ATTGGGCGCATGTATAAAGC+TGG + chr3_1:84773517-84773536 None:intergenic 45.0%
CCGCCTAAAGTACACTTTCT+AGG - chr3_1:84773723-84773742 Msa0382310:intron 45.0%
TTGCAGCTGATGGAACAATC+TGG + chr3_1:84774423-84774442 None:intergenic 45.0%
! GATCGAGACTTTTGTTGAGG+TGG + chr3_1:84774490-84774509 None:intergenic 45.0%
!! TTAAATTTAAAAAATAGTAT+TGG + chr3_1:84771418-84771437 None:intergenic 5.0%
! TGGGCCTGTTTCTTCGCTTT+CGG + chr3_1:84769990-84770009 None:intergenic 50.0%
CTGACGTGGGAGTTAACGAT+GGG + chr3_1:84770009-84770028 None:intergenic 50.0%
TCTGACGTGGGAGTTAACGA+TGG + chr3_1:84770010-84770029 None:intergenic 50.0%
ATTAAGGGAGGAGAACGGGT+TGG + chr3_1:84770185-84770204 None:intergenic 50.0%
CGGTGGCGTTTAATTAAGGG+AGG + chr3_1:84770197-84770216 None:intergenic 50.0%
GTGTGTGTGTGTGTGTGTGT+AGG - chr3_1:84770983-84771002 Msa0382310:intron 50.0%
! TGTCAAGTGGTGTCAAGTCG+TGG - chr3_1:84771315-84771334 Msa0382310:intron 50.0%
CTACAGCACTGTAGTGTAGC+AGG - chr3_1:84771349-84771368 Msa0382310:intron 50.0%
TGCTAATGTGGTGGTTGCAG+AGG - chr3_1:84771762-84771781 Msa0382310:CDS 50.0%
TGTGGTGGTTGCAGAGGTAA+TGG - chr3_1:84771768-84771787 Msa0382310:CDS 50.0%
AGGCTGCGTATGGAACAATC+CGG + chr3_1:84771806-84771825 None:intergenic 50.0%
GAAGGACCCGTTCCTAACAT+GGG + chr3_1:84771879-84771898 None:intergenic 50.0%
AGAAGGACCCGTTCCTAACA+TGG + chr3_1:84771880-84771899 None:intergenic 50.0%
!! TTTTAGCTGGCTCAGCAGCA+GGG - chr3_1:84771907-84771926 Msa0382310:intron 50.0%
! GGAGTTCGTGGGCTTTATAG+AGG - chr3_1:84772637-84772656 Msa0382310:intron 50.0%
! CGTGGGCTTTATAGAGGTGT+AGG - chr3_1:84772643-84772662 Msa0382310:intron 50.0%
TCATCAGGTCCAACCCTTAC+TGG - chr3_1:84773091-84773110 Msa0382310:CDS 50.0%
CAGCAAGAGCTCCACAAGAA+AGG + chr3_1:84773207-84773226 None:intergenic 50.0%
CTTTCTTGTGGAGCTCTTGC+TGG - chr3_1:84773205-84773224 Msa0382310:intron 50.0%
GGAGCTCTTGCTGGATTGTT+TGG - chr3_1:84773214-84773233 Msa0382310:intron 50.0%
! TATATTTACCGAGGGTGCGG+TGG + chr3_1:84774985-84775004 None:intergenic 50.0%
CTTCTGTTGCGCCTCTCGAA+CGG - chr3_1:84770548-84770567 Msa0382310:CDS 55.0%
TTCTGTTGCGCCTCTCGAAC+GGG - chr3_1:84770549-84770568 Msa0382310:CDS 55.0%
! GTGGTGTCAAGTCGTGGCTA+CGG - chr3_1:84771321-84771340 Msa0382310:intron 55.0%
!! CTTTTAGCTGGCTCAGCAGC+AGG - chr3_1:84771906-84771925 Msa0382310:intron 55.0%
! TTTAGCTGGCTCAGCAGCAG+GGG - chr3_1:84771908-84771927 Msa0382310:intron 55.0%
!! ATACTTTGGTGGTGAGGGGG+AGG - chr3_1:84772425-84772444 Msa0382310:CDS 55.0%
!! TACTTTGGTGGTGAGGGGGA+GGG - chr3_1:84772426-84772445 Msa0382310:CDS 55.0%
AGGGGGAGGGATACTTTCTG+AGG - chr3_1:84772439-84772458 Msa0382310:CDS 55.0%
GGGGGAGGGATACTTTCTGA+GGG - chr3_1:84772440-84772459 Msa0382310:CDS 55.0%
! CAGGTTGGGAGCCTGCAAAA+TGG - chr3_1:84773280-84773299 Msa0382310:intron 55.0%
AGGCGTACAGGAGTTTCACG+AGG - chr3_1:84774845-84774864 Msa0382310:five_prime_UTR 55.0%
!! AAGGGAGGAGAACGGGTTGG+AGG + chr3_1:84770182-84770201 None:intergenic 60.0%
! TTAGCTGGCTCAGCAGCAGG+GGG - chr3_1:84771909-84771928 Msa0382310:intron 60.0%
GGGTGGAGGCAGTTGTTTGC+AGG - chr3_1:84773367-84773386 Msa0382310:intron 60.0%
ATCTACTGCCACCGCACCCT+CGG - chr3_1:84774974-84774993 Msa0382310:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 84769968 84775024 84769968 ID=Msa0382310;Name=Msa0382310
chr3_1 mRNA 84769968 84775024 84769968 ID=Msa0382310-mRNA-1;Parent=Msa0382310;Name=Msa0382310-mRNA-1;_AED=0.04;_eAED=0.04;_QI=441|1|1|1|1|1|6|499|343
chr3_1 exon 84769968 84770568 84769968 ID=Msa0382310-mRNA-1:exon:22112;Parent=Msa0382310-mRNA-1
chr3_1 exon 84771581 84771894 84771581 ID=Msa0382310-mRNA-1:exon:22111;Parent=Msa0382310-mRNA-1
chr3_1 exon 84772328 84772469 84772328 ID=Msa0382310-mRNA-1:exon:22110;Parent=Msa0382310-mRNA-1
chr3_1 exon 84773003 84773210 84773003 ID=Msa0382310-mRNA-1:exon:22109;Parent=Msa0382310-mRNA-1
chr3_1 exon 84773298 84773383 84773298 ID=Msa0382310-mRNA-1:exon:22108;Parent=Msa0382310-mRNA-1
chr3_1 exon 84774404 84775024 84774404 ID=Msa0382310-mRNA-1:exon:22107;Parent=Msa0382310-mRNA-1
chr3_1 five_prime_UTR 84774584 84775024 84774584 ID=Msa0382310-mRNA-1:five_prime_utr;Parent=Msa0382310-mRNA-1
chr3_1 CDS 84774404 84774583 84774404 ID=Msa0382310-mRNA-1:cds;Parent=Msa0382310-mRNA-1
chr3_1 CDS 84773298 84773383 84773298 ID=Msa0382310-mRNA-1:cds;Parent=Msa0382310-mRNA-1
chr3_1 CDS 84773003 84773210 84773003 ID=Msa0382310-mRNA-1:cds;Parent=Msa0382310-mRNA-1
chr3_1 CDS 84772328 84772469 84772328 ID=Msa0382310-mRNA-1:cds;Parent=Msa0382310-mRNA-1
chr3_1 CDS 84771581 84771894 84771581 ID=Msa0382310-mRNA-1:cds;Parent=Msa0382310-mRNA-1
chr3_1 CDS 84770467 84770568 84770467 ID=Msa0382310-mRNA-1:cds;Parent=Msa0382310-mRNA-1
chr3_1 three_prime_UTR 84769968 84770466 84769968 ID=Msa0382310-mRNA-1:three_prime_utr;Parent=Msa0382310-mRNA-1
Gene Sequence

>Msa0382310

ATGGATTCTTCTCAAGATTCTAGATTGGCTGGTTTGGTGAAAAATGCATCTATTAAGAGAGATGAATCTAGTTTCGATCGCGTTCCTGTTTATGTTAAGGAGTTAATTGCTGGTGGATTTGCTGGTGCGCTTGCTAAGACTTCTGTTGCGCCTCTCGAACGGGTTAAGATACTTTGGCAGACAAGGACCGGTGGATTTCATAATCTTGGTGTGTGCCAATCTGTGAATAAGTTGCTAAAGCATGAAGGTTTTCTAGGATTATATAAAGGTAATGGAGCTAGTGTTATCCGGATTGTTCCATACGCAGCCTTGCATTTTATGACATATGAGCGGTATAAAAGTTGGATCCTGAACAATTATCCCATGTTAGGAACGGGTCCTTCTATCGATCTTTTAGCTGGCTCAGCAGCAGGGGGAACTTCAGTTTTATGTACATATCCCTTAGATCTTGCCCGTACCAAACTTGCTTATCAGGTGGTGGACACCAAAGGATGTATCAAAGATGGTATTAAAGCAGTTCATTCTCAACCTGTAGGTCCTGTACATAATGGCATTAAAGGTGTACTTACAAGTGCCTATAAAGAAGCTGGAGTTCGTGGGCTTTATAGAGGTGTAGGTCCAACCCTTACTGGAATTCTTCCATATGCTGGTTTAAAGTTCTATACGTATGAGAAGTTGAAAATGCATGTTCCTGAAGAACATCAGAAGTCCATTCTGATGCGCCTTTCTTGTGGAGCTCTTGCTGGATTGTTTGGGCAGACTTTAACATACCCTTTGGATGTTGTTAAGAGACAAATGCAGGTTGGGAGCCTGCAAAATGGAGCTAATGGAGATGCCGCATACAAAAATACATTTGATGGGCTTAGGAAGATTGTTCGAAATCAAGGGTGGAGGCAGTTGTTTGCAGGCGTAAGCATTAACTACATAAGGATTGTTCCATCAGCTGCAATTAGTTTCACCACATATGACATGATGAAGGCTTGGCTTGGTGTACCACCTCAACAAAAGTCTCGATCAGTTTCTTCAGGATAA

Protein sequence

>Msa0382310

MDSSQDSRLAGLVKNASIKRDESSFDRVPVYVKELIAGGFAGALAKTSVAPLERVKILWQTRTGGFHNLGVCQSVNKLLKHEGFLGLYKGNGASVIRIVPYAALHFMTYERYKSWILNNYPMLGTGPSIDLLAGSAAGGTSVLCTYPLDLARTKLAYQVVDTKGCIKDGIKAVHSQPVGPVHNGIKGVLTSAYKEAGVRGLYRGVGPTLTGILPYAGLKFYTYEKLKMHVPEEHQKSILMRLSCGALAGLFGQTLTYPLDVVKRQMQVGSLQNGANGDAAYKNTFDGLRKIVRNQGWRQLFAGVSINYIRIVPSAAISFTTYDMMKAWLGVPPQQKSRSVSSG*