Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1428870 | XP_003617793.1 | 97.270 | 293 | 8 | 0 | 103 | 395 | 82 | 374 | 0.0 | 606 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1428870 | sp|Q8VYE2|TIM50_ARATH | 58.784 | 296 | 115 | 4 | 106 | 395 | 81 | 375 | 4.93e-123 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1428870 | G7K4N6 | 97.270 | 293 | 8 | 0 | 103 | 395 | 82 | 374 | 0.0 | 606 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0743920 | Msa1428870 | 0.937408 | 3.640328e-98 | -8.615850e-47 |
| Msa0748180 | Msa1428870 | 0.943716 | 7.277545e-103 | -8.615850e-47 |
| Msa0139110 | Msa1428870 | 0.939099 | 2.243470e-99 | -8.615850e-47 |
| Msa1340560 | Msa1428870 | 0.817787 | 2.751408e-52 | -8.615850e-47 |
| Msa1071040 | Msa1428870 | 0.823922 | 1.067198e-53 | -8.615850e-47 |
| Msa0252470 | Msa1428870 | 0.818554 | 1.844906e-52 | -8.615850e-47 |
| Msa0291960 | Msa1428870 | 0.852743 | 3.778234e-61 | -8.615850e-47 |
| Msa0329930 | Msa1428870 | 0.851975 | 6.252486e-61 | -8.615850e-47 |
| Msa0333220 | Msa1428870 | 0.840811 | 6.944208e-58 | -8.615850e-47 |
| Msa1118440 | Msa1428870 | 0.821172 | 4.649689e-53 | -8.615850e-47 |
| Msa1159030 | Msa1428870 | 0.834539 | 2.827418e-56 | -8.615850e-47 |
| Msa0864230 | Msa1428870 | 0.943751 | 6.826779e-103 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1428870 | MtrunA17_Chr5g0446321 | 97.270 | 293 | 8 | 0 | 103 | 395 | 82 | 374 | 0.0 | 606 |
| Msa1428870 | MtrunA17_Chr3g0078241 | 34.973 | 183 | 95 | 6 | 202 | 364 | 282 | 460 | 2.28e-20 | 92.8 |
| Msa1428870 | MtrunA17_Chr2g0303951 | 32.973 | 185 | 104 | 6 | 201 | 369 | 286 | 466 | 2.32e-19 | 89.7 |
| Msa1428870 | MtrunA17_Chr5g0419741 | 30.688 | 189 | 99 | 5 | 214 | 385 | 126 | 299 | 2.72e-17 | 82.0 |
| Msa1428870 | MtrunA17_Chr3g0122541 | 31.293 | 147 | 82 | 4 | 205 | 332 | 268 | 414 | 8.47e-15 | 75.9 |
| Msa1428870 | MtrunA17_Chr2g0284551 | 31.210 | 157 | 89 | 2 | 193 | 333 | 91 | 244 | 2.05e-14 | 73.2 |
| Msa1428870 | MtrunA17_Chr3g0113611 | 28.671 | 143 | 96 | 4 | 236 | 376 | 129 | 267 | 1.93e-12 | 67.0 |
| Msa1428870 | MtrunA17_Chr5g0437111 | 28.244 | 131 | 90 | 3 | 236 | 364 | 155 | 283 | 1.21e-11 | 65.1 |
| Msa1428870 | MtrunA17_Chr3g0122521 | 32.632 | 95 | 63 | 1 | 239 | 332 | 59 | 153 | 3.27e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1428870 | AT1G55900.1 | 58.784 | 296 | 115 | 4 | 106 | 395 | 81 | 375 | 5.01e-124 | 363 |
| Msa1428870 | AT1G55900.2 | 58.703 | 293 | 114 | 3 | 106 | 395 | 81 | 369 | 2.24e-123 | 361 |
| Msa1428870 | AT5G11860.3 | 30.387 | 181 | 104 | 6 | 203 | 364 | 99 | 276 | 1.40e-17 | 83.2 |
| Msa1428870 | AT5G11860.5 | 30.387 | 181 | 104 | 6 | 203 | 364 | 99 | 276 | 1.40e-17 | 83.2 |
| Msa1428870 | AT5G11860.1 | 30.387 | 181 | 104 | 6 | 203 | 364 | 99 | 276 | 1.40e-17 | 83.2 |
| Msa1428870 | AT5G11860.4 | 30.387 | 181 | 104 | 6 | 203 | 364 | 99 | 276 | 1.40e-17 | 83.2 |
| Msa1428870 | AT5G11860.2 | 30.387 | 181 | 104 | 6 | 203 | 364 | 99 | 276 | 1.40e-17 | 83.2 |
| Msa1428870 | AT5G45700.1 | 32.000 | 175 | 100 | 5 | 214 | 371 | 99 | 271 | 2.86e-15 | 75.9 |
| Msa1428870 | AT5G46410.2 | 31.737 | 167 | 95 | 5 | 214 | 364 | 285 | 448 | 7.21e-15 | 76.3 |
| Msa1428870 | AT5G46410.3 | 31.737 | 167 | 95 | 5 | 214 | 364 | 282 | 445 | 8.04e-15 | 76.3 |
| Msa1428870 | AT5G46410.1 | 31.737 | 167 | 95 | 5 | 214 | 364 | 282 | 445 | 8.04e-15 | 76.3 |
| Msa1428870 | AT1G29780.1 | 31.169 | 154 | 88 | 4 | 214 | 350 | 51 | 203 | 1.01e-14 | 73.2 |
| Msa1428870 | AT3G55960.1 | 30.075 | 133 | 85 | 4 | 236 | 364 | 155 | 283 | 1.29e-13 | 71.6 |
| Msa1428870 | AT1G29770.1 | 29.032 | 155 | 91 | 4 | 214 | 350 | 104 | 257 | 3.98e-12 | 66.6 |
Find 141 sgRNAs with CRISPR-Local
Find 424 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATATATTTGATTTCTAAAA+TGG | 0.149532 | tig0026416:+8919 | Msa1428870:three_prime_UTR |
| GCAATAAAATCCTAAAATTT+AGG | 0.175512 | tig0026416:-8979 | None:intergenic |
| GTCTGCACCCATGGCTTAAT+AGG | 0.239907 | tig0026416:-7501 | None:intergenic |
| AGAATCGAGATCGGAGAATT+TGG | 0.254120 | tig0026416:-2857 | None:intergenic |
| AAACATTGATTCACTACATT+TGG | 0.275640 | tig0026416:+6600 | Msa1428870:CDS |
| GGATCCAGCCTTTCTATAAC+AGG | 0.280220 | tig0026416:-7044 | None:intergenic |
| ACCCGGAGTTGATGCCTTCT+TGG | 0.287511 | tig0026416:+6864 | Msa1428870:CDS |
| TAAAGCAGTAGAGCTTTATT+TGG | 0.300211 | tig0026416:+6348 | Msa1428870:CDS |
| TCTTCACTTTCATTTCAAAC+TGG | 0.317230 | tig0026416:-8861 | None:intergenic |
| TGCTCCTGAGGAAGCAAATC+TGG | 0.325320 | tig0026416:-6545 | None:intergenic |
| TGAGGAAATTCCAGCGGTTA+GGG | 0.343277 | tig0026416:-3094 | None:intergenic |
| GGGGAAGCGGTGGAAGAAAA+AGG | 0.345345 | tig0026416:-3074 | None:intergenic |
| CCTTCCAGATTTGCTTCCTC+AGG | 0.348453 | tig0026416:+6541 | Msa1428870:CDS |
| GGCCTACATAATTCTGTTGT+CGG | 0.351425 | tig0026416:+8676 | Msa1428870:three_prime_UTR |
| AAGAGGTTCAGGTAGGGTTT+TGG | 0.354118 | tig0026416:-2789 | None:intergenic |
| ACCGGCTACGGCGGTGGTTC+CGG | 0.354192 | tig0026416:-3141 | None:intergenic |
| AGCTCAGTTCTTTGAAATAG+TGG | 0.368246 | tig0026416:+6894 | Msa1428870:CDS |
| TTGGAGAGACATTGTTGTTA+TGG | 0.371901 | tig0026416:-2838 | None:intergenic |
| AAATGAAATGAAAGAGGTTC+AGG | 0.372153 | tig0026416:-2800 | None:intergenic |
| GAGAAACATGGAGGAGGTTG+AGG | 0.375735 | tig0026416:-2933 | None:intergenic |
| GAGACCTGCTACTAAGTATC+AGG | 0.375953 | tig0026416:+7094 | Msa1428870:CDS |
| GGAGGAGGAGTGGCGGAAGA+AGG | 0.377139 | tig0026416:-3044 | None:intergenic |
| ATGGTTCAAGACTCTAGTTC+AGG | 0.377307 | tig0026416:-8645 | None:intergenic |
| GTAGCGGAAGAGGGAGGAGG+TGG | 0.379260 | tig0026416:-3014 | None:intergenic |
| GAATGCTTAAATTTCCGTTA+AGG | 0.385398 | tig0026416:+8758 | Msa1428870:three_prime_UTR |
| ACTCTTGTTCAAGTTTCAAT+TGG | 0.392948 | tig0026416:+8807 | Msa1428870:three_prime_UTR |
| GGAGGAGTGGCGGAAGAAGG+TGG | 0.394550 | tig0026416:-3041 | None:intergenic |
| GAAGAGGGAGGAGGTGGAGA+AGG | 0.401258 | tig0026416:-3008 | None:intergenic |
| AGGTGGAGGAGTAGCGGAAG+AGG | 0.403611 | tig0026416:-3024 | None:intergenic |
| TCCAAATGATGCAGGAAAAC+CGG | 0.404155 | tig0026416:+8448 | Msa1428870:intron |
| TACGGCGGTGGTTCCGGTTA+AGG | 0.406728 | tig0026416:-3135 | None:intergenic |
| TTGAGGAAATTCCAGCGGTT+AGG | 0.408146 | tig0026416:-3095 | None:intergenic |
| GTGCAAACTTCTGTAATTTG+AGG | 0.410329 | tig0026416:-8784 | None:intergenic |
| AGGATCTTTCAAAACTAAAC+AGG | 0.413308 | tig0026416:+7409 | Msa1428870:intron |
| GTAATTTGAGGAGTCCTTAA+CGG | 0.414369 | tig0026416:-8772 | None:intergenic |
| CGAACCGTAAGAGGCGTAAC+CGG | 0.415603 | tig0026416:-3159 | None:intergenic |
| GCTGCCATCGGTGCCTTAAC+CGG | 0.417543 | tig0026416:+3122 | Msa1428870:CDS |
| GAAGGAGTGGCAGAAGGAGG+AGG | 0.419573 | tig0026416:-2990 | None:intergenic |
| GGTTTATTGAAGAACACGTT+AGG | 0.429285 | tig0026416:+6380 | Msa1428870:CDS |
| GTATACAGATGAACAGAATA+TGG | 0.431740 | tig0026416:+6918 | Msa1428870:CDS |
| ATAGAACACTAATTTAGATA+TGG | 0.431852 | tig0026416:+8946 | Msa1428870:three_prime_UTR |
| TCTGCACCCATGGCTTAATA+GGG | 0.437365 | tig0026416:-7500 | None:intergenic |
| CACCGATGGCAGCGTATTTG+AGG | 0.444864 | tig0026416:-3112 | None:intergenic |
| AGGAGGAGGTGGAGGAGGAG+TGG | 0.447975 | tig0026416:-3054 | None:intergenic |
| CAGGCGTTTCAAATTGCATA+AGG | 0.448133 | tig0026416:+7760 | Msa1428870:CDS |
| GGAGTAGCGGAAGAGGGAGG+AGG | 0.449116 | tig0026416:-3017 | None:intergenic |
| AGGAGGTGGAGGAGGAGTGG+CGG | 0.449841 | tig0026416:-3051 | None:intergenic |
| TGGATCCTAAGCACTGCATT+AGG | 0.453716 | tig0026416:+7060 | Msa1428870:CDS |
| ATTCCAGCGGTTAGGGGAAG+CGG | 0.455791 | tig0026416:-3087 | None:intergenic |
| GGTGGAGGAGTAGCGGAAGA+GGG | 0.456550 | tig0026416:-3023 | None:intergenic |
| TTATATCAGCCGGGCTAGTA+CGG | 0.463174 | tig0026416:-7688 | None:intergenic |
| GGGAGGAGGTGGAGAAGGAG+TGG | 0.463546 | tig0026416:-3003 | None:intergenic |
| AGTAGCAGCAGGAGCGGCGG+TGG | 0.464184 | tig0026416:-2958 | None:intergenic |
| GGTGGAGAAGGAGTGGCAGA+AGG | 0.464320 | tig0026416:-2996 | None:intergenic |
| CCATCCTGATACTTAGTAGC+AGG | 0.468851 | tig0026416:-7098 | None:intergenic |
| GGAGTGGCAGAAGGAGGAGG+AGG | 0.468973 | tig0026416:-2987 | None:intergenic |
| TTATGCTTGCAGAAATTTCA+AGG | 0.477158 | tig0026416:+4884 | Msa1428870:intron |
| GGAGAAGGAGTGGCAGAAGG+AGG | 0.479566 | tig0026416:-2993 | None:intergenic |
| CCAGAGGCGTCTCTGTCCTC+CGG | 0.480081 | tig0026416:-8467 | None:intergenic |
| GGCGTAACCGGCTACGGCGG+TGG | 0.481279 | tig0026416:-3147 | None:intergenic |
| AGCACTGGTCTTATATCAGC+CGG | 0.483378 | tig0026416:-7698 | None:intergenic |
| CTTCACTTTCATTTCAAACT+GGG | 0.483745 | tig0026416:-8860 | None:intergenic |
| GGAAGGAGCTTGTCTGTGTA+TGG | 0.485204 | tig0026416:-6524 | None:intergenic |
| CACTCGGAATATCACATCCT+TGG | 0.486830 | tig0026416:-7730 | None:intergenic |
| TTAATAGGGACACAGTTCTC+AGG | 0.487617 | tig0026416:-7486 | None:intergenic |
| CTAAGCACTGCATTAGGTAC+AGG | 0.494989 | tig0026416:+7066 | Msa1428870:CDS |
| TTGCATTTGCAAAATGAAGT+TGG | 0.498368 | tig0026416:+8889 | Msa1428870:three_prime_UTR |
| TTGTAGACCCTGTTATAGAA+AGG | 0.499591 | tig0026416:+7036 | Msa1428870:CDS |
| GCTTGGCTTGGTGGAGACGC+CGG | 0.505360 | tig0026416:-2767 | None:intergenic |
| GCAAAAGTTATGTACTTAAG+TGG | 0.505360 | tig0026416:+7438 | Msa1428870:CDS |
| TTCAGTATTGTTACTTCCAG+AGG | 0.505530 | tig0026416:-8483 | None:intergenic |
| TAAAGCTCTACTGCTTTAGC+AGG | 0.507689 | tig0026416:-6343 | None:intergenic |
| AAAGCTTAACAGAGTTGATC+CGG | 0.510006 | tig0026416:+2748 | None:intergenic |
| AGACCCTGTTATAGAAAGGC+TGG | 0.510757 | tig0026416:+7040 | Msa1428870:CDS |
| TTCCAAGAAGGCATCAACTC+CGG | 0.511667 | tig0026416:-6866 | None:intergenic |
| CCTTGGTAAGACTGCAGCAC+TGG | 0.513048 | tig0026416:-7713 | None:intergenic |
| GGAGGAGTAGCGGAAGAGGG+AGG | 0.513402 | tig0026416:-3020 | None:intergenic |
| TATATCAGCCGGGCTAGTAC+GGG | 0.517337 | tig0026416:-7687 | None:intergenic |
| TCTTTATCAGTCTGCACCCA+TGG | 0.518730 | tig0026416:-7510 | None:intergenic |
| GTAATGTGCAGCTTATAGTT+CGG | 0.523902 | tig0026416:+3311 | Msa1428870:intron |
| CCGGAGGACAGAGACGCCTC+TGG | 0.524054 | tig0026416:+8467 | Msa1428870:CDS |
| TTATAGTTCGGACGAAATTG+AGG | 0.524378 | tig0026416:+3323 | Msa1428870:CDS |
| TCCAAGAAGGCATCAACTCC+GGG | 0.525377 | tig0026416:-6865 | None:intergenic |
| GTAGCCGGTTACGCCTCTTA+CGG | 0.529718 | tig0026416:+3155 | Msa1428870:CDS |
| TGAATGAAATGAAATGAAAG+AGG | 0.529892 | tig0026416:-2806 | None:intergenic |
| GGACACAGTTCTCAGGTTGT+AGG | 0.531104 | tig0026416:-7479 | None:intergenic |
| TAAAGATGATACAGCTCTTG+TGG | 0.533851 | tig0026416:+7527 | Msa1428870:CDS |
| CTGTACCTAATGCAGTGCTT+AGG | 0.536001 | tig0026416:-7065 | None:intergenic |
| TCGAGAGAAGTAGCTCCATC+AGG | 0.536228 | tig0026416:-3387 | None:intergenic |
| GGAGGTGAATGAGTAGCAGC+AGG | 0.536311 | tig0026416:-2969 | None:intergenic |
| AGCTTTATTTGGATGCAAGA+AGG | 0.537430 | tig0026416:+6359 | Msa1428870:CDS |
| ATATTCCGAGTGAATTCCTC+AGG | 0.538760 | tig0026416:+7741 | Msa1428870:CDS |
| GGAGTGGCGGAAGAAGGTGG+AGG | 0.539928 | tig0026416:-3038 | None:intergenic |
| GTTTATTGAAGAACACGTTA+GGG | 0.542013 | tig0026416:+6381 | Msa1428870:CDS |
| GTATACTCAACTGCAGTGAC+AGG | 0.543024 | tig0026416:+4911 | Msa1428870:CDS |
| CTTGCAGAAATTTCAAGGGA+TGG | 0.544133 | tig0026416:+4889 | Msa1428870:intron |
| GAAATGAAAGAGGTTCAGGT+AGG | 0.550193 | tig0026416:-2796 | None:intergenic |
| ACCGGAACCACCGCCGTAGC+CGG | 0.551106 | tig0026416:+3140 | Msa1428870:CDS |
| TGGTTCAAGACTCTAGTTCA+GGG | 0.553194 | tig0026416:-8644 | None:intergenic |
| CCACCGCTTCCCCTAACCGC+TGG | 0.553504 | tig0026416:+3084 | Msa1428870:CDS |
| TATGCTTGCAGAAATTTCAA+GGG | 0.560032 | tig0026416:+4885 | Msa1428870:intron |
| GTAGGCAACTTTCTAAAGCA+TGG | 0.562469 | tig0026416:-7461 | None:intergenic |
| CCTGCTACTAAGTATCAGGA+TGG | 0.566998 | tig0026416:+7098 | Msa1428870:CDS |
| CTGTGTCCCTATTAAGCCAT+GGG | 0.571381 | tig0026416:+7494 | Msa1428870:CDS |
| TTCCTCAAATACGCTGCCAT+CGG | 0.575985 | tig0026416:+3110 | Msa1428870:CDS |
| TGAATGAGTAGCAGCAGGAG+CGG | 0.576769 | tig0026416:-2964 | None:intergenic |
| ATCAGGTGGAGTGTACTTAG+CGG | 0.577775 | tig0026416:-3370 | None:intergenic |
| GCTAAGTACACTCCACCTGA+TGG | 0.578725 | tig0026416:+3372 | Msa1428870:CDS |
| AGTTATTGCCCGTACTAGCC+CGG | 0.582795 | tig0026416:+7679 | Msa1428870:intron |
| TTTGAAATGAAAGTGAAGAG+TGG | 0.583317 | tig0026416:+8865 | Msa1428870:three_prime_UTR |
| AAATGAAAGAGGTTCAGGTA+GGG | 0.586182 | tig0026416:-2795 | None:intergenic |
| ATTGATTCACTACATTTGGA+CGG | 0.591226 | tig0026416:+6604 | Msa1428870:CDS |
| GAGGAATGCACTTACACTCA+AGG | 0.594742 | tig0026416:-7563 | None:intergenic |
| GTAAGAGGCGTAACCGGCTA+CGG | 0.595627 | tig0026416:-3153 | None:intergenic |
| ATGTGAAGCGAGATACAAGC+TGG | 0.600307 | tig0026416:+6827 | Msa1428870:intron |
| GGAAGAAGGTGGAGGAGTAG+CGG | 0.600482 | tig0026416:-3030 | None:intergenic |
| ACTGTGTCCCTATTAAGCCA+TGG | 0.604101 | tig0026416:+7493 | Msa1428870:CDS |
| TACCGACAACAGAATTATGT+AGG | 0.612471 | tig0026416:-8678 | None:intergenic |
| CGACGGAGAAGAATCGAGAT+CGG | 0.613375 | tig0026416:-2866 | None:intergenic |
| TTGAAGCCACTGCAAAATCG+AGG | 0.614160 | tig0026416:+8579 | Msa1428870:three_prime_UTR |
| GGTTCCGGTTAAGGCACCGA+TGG | 0.615001 | tig0026416:-3126 | None:intergenic |
| CCTGAGGAAGCAAATCTGGA+AGG | 0.622399 | tig0026416:-6541 | None:intergenic |
| ATGCACTTACACTCAAGGAA+TGG | 0.623566 | tig0026416:-7558 | None:intergenic |
| GTGGATGAGAAACATGGAGG+AGG | 0.623914 | tig0026416:-2939 | None:intergenic |
| CTGAGCTAGATGTTCCAAGA+AGG | 0.625883 | tig0026416:-6878 | None:intergenic |
| AGAGAAGTAGCTCCATCAGG+TGG | 0.626174 | tig0026416:-3384 | None:intergenic |
| GCACTGGTCTTATATCAGCC+GGG | 0.635398 | tig0026416:-7697 | None:intergenic |
| ATGAGTAGCAGCAGGAGCGG+CGG | 0.640320 | tig0026416:-2961 | None:intergenic |
| GCGGCGGTGGATGAGAAACA+TGG | 0.643040 | tig0026416:-2945 | None:intergenic |
| CCAGCGGTTAGGGGAAGCGG+TGG | 0.643133 | tig0026416:-3084 | None:intergenic |
| CTGCTACTAAGTATCAGGAT+GGG | 0.644510 | tig0026416:+7099 | Msa1428870:CDS |
| GTGAACACATGTTGCTCCTG+AGG | 0.649088 | tig0026416:-6557 | None:intergenic |
| GAGGAAATTCCAGCGGTTAG+GGG | 0.651443 | tig0026416:-3093 | None:intergenic |
| AAACGCCTGAGGAATTCACT+CGG | 0.654658 | tig0026416:-7746 | None:intergenic |
| GATCCAGCCTTTCTATAACA+GGG | 0.661553 | tig0026416:-7043 | None:intergenic |
| CGTATTTGAGGAAATTCCAG+CGG | 0.669655 | tig0026416:-3100 | None:intergenic |
| CCAGTGCTGCAGTCTTACCA+AGG | 0.672246 | tig0026416:+7713 | Msa1428870:CDS |
| TATGCAATTTGAAACGCCTG+AGG | 0.679211 | tig0026416:-7757 | None:intergenic |
| AAATGATGCAGGAAAACCGG+AGG | 0.687211 | tig0026416:+8451 | Msa1428870:intron |
| AGAGGCGTAACCGGCTACGG+CGG | 0.690683 | tig0026416:-3150 | None:intergenic |
| GCGGTGGATGAGAAACATGG+AGG | 0.755481 | tig0026416:-2942 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAATTATATATTTAA+AGG | - | tig0026416:4994-5013 | None:intergenic | 0.0% |
| !!! | TTTTATGATATGATAATTAA+CGG | + | tig0026416:5597-5616 | Msa1428870:intron | 10.0% |
| !! | TTATTATAATAATATTGACA+CGG | + | tig0026416:6209-6228 | Msa1428870:intron | 10.0% |
| !!! | TTAACTGATTTAAAAAATTT+GGG | + | tig0026416:7810-7829 | Msa1428870:intron | 10.0% |
| !!! | AATATATTTGATTTCTAAAA+TGG | + | tig0026416:8919-8938 | Msa1428870:three_prime_UTR | 10.0% |
| !! | TAACATATTAAAATGACTAA+AGG | - | tig0026416:4321-4340 | None:intergenic | 15.0% |
| !!! | ATTTTTACTGTTTTGTTTAT+TGG | + | tig0026416:4726-4745 | Msa1428870:intron | 15.0% |
| !! | TCATAGAAATATCTATTATA+CGG | + | tig0026416:5834-5853 | Msa1428870:intron | 15.0% |
| !! | TATTATAATAATATTGACAC+GGG | + | tig0026416:6210-6229 | Msa1428870:intron | 15.0% |
| !! | AAATATCAAATATCTTTGAA+TGG | + | tig0026416:6666-6685 | Msa1428870:intron | 15.0% |
| !! | AATATCAAATATCTTTGAAT+GGG | + | tig0026416:6667-6686 | Msa1428870:intron | 15.0% |
| !! | ATTAATGCTATGAAAATTTA+TGG | + | tig0026416:6700-6719 | Msa1428870:intron | 15.0% |
| !! | AGTAAAAATCAACATTATAT+AGG | - | tig0026416:6797-6816 | None:intergenic | 15.0% |
| !!! | TGTTGATTTTTACTTTTATT+TGG | + | tig0026416:6803-6822 | Msa1428870:intron | 15.0% |
| !!! | CTTAACTGATTTAAAAAATT+TGG | + | tig0026416:7809-7828 | Msa1428870:intron | 15.0% |
| !! | CTAAATTTATATCATATGTA+AGG | - | tig0026416:8303-8322 | None:intergenic | 15.0% |
| !! | CTTACATATGATATAAATTT+AGG | + | tig0026416:8301-8320 | Msa1428870:intron | 15.0% |
| !!! | AAATCTACATTTTATCTATT+TGG | - | tig0026416:8615-8634 | None:intergenic | 15.0% |
| !!! | AGTAATAAAACCTAAATTTT+AGG | + | tig0026416:8969-8988 | Msa1428870:three_prime_UTR | 15.0% |
| !! | TATTTATTTGTTTGATGAAG+TGG | + | tig0026416:4022-4041 | Msa1428870:intron | 20.0% |
| !!! | TTTTGTTTCTTGTTTTTAGT+CGG | - | tig0026416:4572-4591 | None:intergenic | 20.0% |
| !! | TAACATATTAAACTGACTAA+AGG | - | tig0026416:4827-4846 | None:intergenic | 20.0% |
| !! | AGTCAGTTTAATATGTTAAT+AGG | + | tig0026416:4829-4848 | Msa1428870:intron | 20.0% |
| !! | TATCTTATATCAGTATTGTT+CGG | + | tig0026416:4966-4985 | Msa1428870:intron | 20.0% |
| !! | TAATCATATCAATATGTAGT+AGG | + | tig0026416:5523-5542 | Msa1428870:intron | 20.0% |
| !! | AATCATATCAATATGTAGTA+GGG | + | tig0026416:5524-5543 | Msa1428870:intron | 20.0% |
| !! | ATTATAATAATATTGACACG+GGG | + | tig0026416:6211-6230 | Msa1428870:intron | 20.0% |
| !!! | ATATTTTTATATCCCCAAAA+CGG | - | tig0026416:6652-6671 | None:intergenic | 20.0% |
| !!! | AATTACATTTTATAGTTCAC+AGG | + | tig0026416:7977-7996 | Msa1428870:intron | 20.0% |
| !! | TCAAAAATGAGATACAAAAA+TGG | + | tig0026416:8141-8160 | Msa1428870:intron | 20.0% |
| !! | CAAAAATGAGATACAAAAAT+GGG | + | tig0026416:8142-8161 | Msa1428870:intron | 20.0% |
| !! | AAAAATGAGATACAAAAATG+GGG | + | tig0026416:8143-8162 | Msa1428870:intron | 20.0% |
| !! | AAATCCAGATATTAAATGAT+TGG | - | tig0026416:8185-8204 | None:intergenic | 20.0% |
| !! | CATATGATATAAATTTAGGT+TGG | + | tig0026416:8305-8324 | Msa1428870:intron | 20.0% |
| !!! | CTAAACAGGAATTTTTTTTT+AGG | + | tig0026416:8366-8385 | Msa1428870:intron | 20.0% |
| !! | ATAGAACACTAATTTAGATA+TGG | + | tig0026416:8946-8965 | Msa1428870:three_prime_UTR | 20.0% |
| !! | GCAATAAAATCCTAAAATTT+AGG | - | tig0026416:8982-9001 | None:intergenic | 20.0% |
| ! | TGAATGAAATGAAATGAAAG+AGG | - | tig0026416:2809-2828 | None:intergenic | 25.0% |
| !!! | CGAATTTTTGTTTGATGAAA+TGG | + | tig0026416:3527-3546 | Msa1428870:intron | 25.0% |
| ! | CCAATAAATTGACAAAATGT+GGG | - | tig0026416:4109-4128 | None:intergenic | 25.0% |
| ! | TCCAATAAATTGACAAAATG+TGG | - | tig0026416:4110-4129 | None:intergenic | 25.0% |
| !! | ACATTTTGTCAATTTATTGG+AGG | + | tig0026416:4109-4128 | Msa1428870:intron | 25.0% |
| ! | GACTAAAAACAAGAAACAAA+AGG | + | tig0026416:4571-4590 | Msa1428870:intron | 25.0% |
| ! | ATATCAACCTACTAATGTTA+AGG | - | tig0026416:4855-4874 | None:intergenic | 25.0% |
| ! | CAATACTGATATAAGATAAG+TGG | - | tig0026416:4964-4983 | None:intergenic | 25.0% |
| ! | AAATCACAAAAGAGATTTAG+TGG | - | tig0026416:5447-5466 | None:intergenic | 25.0% |
| ! | ATCATATCAATATGTAGTAG+GGG | + | tig0026416:5525-5544 | Msa1428870:intron | 25.0% |
| ! | TTGGTTTAGTTGTATTGTTA+AGG | + | tig0026416:5913-5932 | Msa1428870:intron | 25.0% |
| ! | TTTAGTTGTATTGTTAAGGA+GGG | + | tig0026416:5917-5936 | Msa1428870:intron | 25.0% |
| !!! | TGCCTTTTAAAATCATTAGA+CGG | + | tig0026416:6081-6100 | Msa1428870:intron | 25.0% |
| ! | TCTTGTAGAAGAATCAAATT+TGG | - | tig0026416:6246-6265 | None:intergenic | 25.0% |
| ! | TACACATGTACAAACTAATT+TGG | - | tig0026416:6272-6291 | None:intergenic | 25.0% |
| !! | TGCTTTTACTTCTCTAATTT+TGG | + | tig0026416:6412-6431 | Msa1428870:intron | 25.0% |
| ! | ATTAAAAGTTTAACACAAGG+TGG | - | tig0026416:6469-6488 | None:intergenic | 25.0% |
| ! | AGCATTAAAAGTTTAACACA+AGG | - | tig0026416:6472-6491 | None:intergenic | 25.0% |
| !! | GTGTTAAACTTTTAATGCTT+TGG | + | tig0026416:6473-6492 | Msa1428870:intron | 25.0% |
| !!! | AAACATTGATTCACTACATT+TGG | + | tig0026416:6600-6619 | Msa1428870:CDS | 25.0% |
| ! | CAGTATCAAAATAAAATGAC+AGG | - | tig0026416:7324-7343 | None:intergenic | 25.0% |
| ! | TCATTTAAATACATCTCAAG+AGG | - | tig0026416:7585-7604 | None:intergenic | 25.0% |
| ! | ATAACAAAAGAACAAAACCT+TGG | - | tig0026416:7849-7868 | None:intergenic | 25.0% |
| ! | AAATGTAATTAACCAGACAA+GGG | - | tig0026416:7967-7986 | None:intergenic | 25.0% |
| ! | AAAATGTAATTAACCAGACA+AGG | - | tig0026416:7968-7987 | None:intergenic | 25.0% |
| ! | TATCATATGTAAGGTGAATT+AGG | - | tig0026416:8294-8313 | None:intergenic | 25.0% |
| AAATGAAATGAAAGAGGTTC+AGG | - | tig0026416:2803-2822 | None:intergenic | 30.0% | |
| ! | TTTCTTGAATCGTATTGATC+TGG | + | tig0026416:3237-3256 | Msa1428870:intron | 30.0% |
| TCATTTCTTACATTACTACC+AGG | + | tig0026416:3626-3645 | Msa1428870:intron | 30.0% | |
| CATTTCTTACATTACTACCA+GGG | + | tig0026416:3627-3646 | Msa1428870:intron | 30.0% | |
| AATTATGACAAAACTCAGCA+TGG | + | tig0026416:3674-3693 | Msa1428870:intron | 30.0% | |
| ATTCACTGTAATCACATATG+TGG | + | tig0026416:3897-3916 | Msa1428870:intron | 30.0% | |
| TTCACTGTAATCACATATGT+GGG | + | tig0026416:3898-3917 | Msa1428870:intron | 30.0% | |
| ! | CCCACATTTTGTCAATTTAT+TGG | + | tig0026416:4106-4125 | Msa1428870:intron | 30.0% |
| TTGGATGTAACACTTTGATA+TGG | + | tig0026416:4142-4161 | Msa1428870:intron | 30.0% | |
| AAACAAAAGGCCTAAAAACA+GGG | + | tig0026416:4584-4603 | Msa1428870:intron | 30.0% | |
| TGACTAAAAACAGGAACAAA+AGG | + | tig0026416:4613-4632 | Msa1428870:intron | 30.0% | |
| TTAAGTTCATGTTGCATAAG+AGG | - | tig0026416:4695-4714 | None:intergenic | 30.0% | |
| ! | GTTTATTGGAATTCCTTTTG+TGG | + | tig0026416:4740-4759 | Msa1428870:intron | 30.0% |
| TAATAGGCCTTAACATTAGT+AGG | + | tig0026416:4845-4864 | Msa1428870:intron | 30.0% | |
| TTATGCTTGCAGAAATTTCA+AGG | + | tig0026416:4884-4903 | Msa1428870:intron | 30.0% | |
| TATGCTTGCAGAAATTTCAA+GGG | + | tig0026416:4885-4904 | Msa1428870:intron | 30.0% | |
| TGTAAAAGTGATCCTTCTTT+CGG | - | tig0026416:5324-5343 | None:intergenic | 30.0% | |
| AAGTACAAACATGAATCGAA+TGG | + | tig0026416:5412-5431 | Msa1428870:intron | 30.0% | |
| ! | GTGATTTTGTGTAGTTATCT+TGG | + | tig0026416:5460-5479 | Msa1428870:intron | 30.0% |
| GTTTAGTTGTATTGTTAAGG+AGG | + | tig0026416:5916-5935 | Msa1428870:intron | 30.0% | |
| ACAAATCCAAAAATCAAACG+TGG | + | tig0026416:5992-6011 | Msa1428870:intron | 30.0% | |
| !! | ATTATGCCACGTTTGATTTT+TGG | - | tig0026416:6001-6020 | None:intergenic | 30.0% |
| CCAATTTAATTCTAATGCAC+CGG | + | tig0026416:6039-6058 | Msa1428870:intron | 30.0% | |
| AGTTTCCTCAAAATCAAAAC+CGG | - | tig0026416:6061-6080 | None:intergenic | 30.0% | |
| ! | TGCCGTCTAATGATTTTAAA+AGG | - | tig0026416:6086-6105 | None:intergenic | 30.0% |
| ! | ATCATTAGACGGCATATTTT+AGG | + | tig0026416:6092-6111 | Msa1428870:intron | 30.0% |
| AACGAAATCTCCTAAAAGTA+TGG | + | tig0026416:6148-6167 | Msa1428870:intron | 30.0% | |
| ! | ATGTGATATGCCATACTTTT+AGG | - | tig0026416:6161-6180 | None:intergenic | 30.0% |
| !! | TAAAGCAGTAGAGCTTTATT+TGG | + | tig0026416:6348-6367 | Msa1428870:CDS | 30.0% |
| GTTTATTGAAGAACACGTTA+GGG | + | tig0026416:6381-6400 | Msa1428870:CDS | 30.0% | |
| GTGGAAAAACATGAAAAGAA+AGG | - | tig0026416:6450-6469 | None:intergenic | 30.0% | |
| ! | ATTGATTCACTACATTTGGA+CGG | + | tig0026416:6604-6623 | Msa1428870:CDS | 30.0% |
| GTATACAGATGAACAGAATA+TGG | + | tig0026416:6918-6937 | Msa1428870:CDS | 30.0% | |
| ! | TTGTTTCTCTGTATTCTGAA+TGG | + | tig0026416:6951-6970 | Msa1428870:intron | 30.0% |
| ATGTCTTTAGTATGTTCTTC+AGG | - | tig0026416:7276-7295 | None:intergenic | 30.0% | |
| AAAATGACAGGAAAAAGCAA+AGG | - | tig0026416:7312-7331 | None:intergenic | 30.0% | |
| !! | ATTTTGATACTGCACAAATG+TGG | + | tig0026416:7332-7351 | Msa1428870:intron | 30.0% |
| AGGATCTTTCAAAACTAAAC+AGG | + | tig0026416:7409-7428 | Msa1428870:intron | 30.0% | |
| ! | CTTAAGTACATAACTTTTGC+AGG | - | tig0026416:7438-7457 | None:intergenic | 30.0% |
| GCAAAAGTTATGTACTTAAG+TGG | + | tig0026416:7438-7457 | Msa1428870:CDS | 30.0% | |
| CAATAACTGCATATGGATAA+TGG | - | tig0026416:7667-7686 | None:intergenic | 30.0% | |
| ! | TTTTCCATTACAAATCTGTG+AGG | + | tig0026416:8011-8030 | Msa1428870:intron | 30.0% |
| TTGCTTCTATTATTGCTGTA+TGG | + | tig0026416:8035-8054 | Msa1428870:intron | 30.0% | |
| TTGATGCAAAAGTTAAGTAG+AGG | + | tig0026416:8087-8106 | Msa1428870:intron | 30.0% | |
| ! | ACGTGAAGTTAATTTTCTTG+TGG | + | tig0026416:8232-8251 | Msa1428870:intron | 30.0% |
| !! | AAATTTAGGTTGGTTGTTGA+AGG | + | tig0026416:8315-8334 | Msa1428870:intron | 30.0% |
| ! | ACAAATAGTTGATGCTAAAC+AGG | + | tig0026416:8352-8371 | Msa1428870:intron | 30.0% |
| AAACACCAGAGTAAAAATGT+TGG | - | tig0026416:8428-8447 | None:intergenic | 30.0% | |
| !!! | AGTCTTGAACCATCATTTTT+TGG | + | tig0026416:8655-8674 | Msa1428870:three_prime_UTR | 30.0% |
| TTATGTAGGCCAAAAAATGA+TGG | - | tig0026416:8667-8686 | None:intergenic | 30.0% | |
| GAATGCTTAAATTTCCGTTA+AGG | + | tig0026416:8758-8777 | Msa1428870:three_prime_UTR | 30.0% | |
| ! | ACTCTTGTTCAAGTTTCAAT+TGG | + | tig0026416:8807-8826 | Msa1428870:three_prime_UTR | 30.0% |
| CTTCACTTTCATTTCAAACT+GGG | - | tig0026416:8863-8882 | None:intergenic | 30.0% | |
| TCTTCACTTTCATTTCAAAC+TGG | - | tig0026416:8864-8883 | None:intergenic | 30.0% | |
| ! | TTTGAAATGAAAGTGAAGAG+TGG | + | tig0026416:8865-8884 | Msa1428870:three_prime_UTR | 30.0% |
| TTGCATTTGCAAAATGAAGT+TGG | + | tig0026416:8889-8908 | Msa1428870:three_prime_UTR | 30.0% | |
| AAATGAAAGAGGTTCAGGTA+GGG | - | tig0026416:2798-2817 | None:intergenic | 35.0% | |
| ! | TTGGAGAGACATTGTTGTTA+TGG | - | tig0026416:2841-2860 | None:intergenic | 35.0% |
| AGAAAAATACGAACCGTAAG+AGG | - | tig0026416:3171-3190 | None:intergenic | 35.0% | |
| CAGTGAAAACAGAAATGAAG+AGG | - | tig0026416:3198-3217 | None:intergenic | 35.0% | |
| GTAATGTGCAGCTTATAGTT+CGG | + | tig0026416:3311-3330 | Msa1428870:intron | 35.0% | |
| TTATAGTTCGGACGAAATTG+AGG | + | tig0026416:3323-3342 | Msa1428870:CDS | 35.0% | |
| ! | ATATCTTCGAACAGAAGTGT+CGG | - | tig0026416:3573-3592 | None:intergenic | 35.0% |
| TTATAATCTATCACACTCCC+TGG | - | tig0026416:3647-3666 | None:intergenic | 35.0% | |
| TGTTCATGTTTGTGCTTCAT+AGG | - | tig0026416:3827-3846 | None:intergenic | 35.0% | |
| ACAAACATGAACATCGAACA+CGG | + | tig0026416:3834-3853 | Msa1428870:intron | 35.0% | |
| TTGTCAATTTATTGGAGGTG+TGG | + | tig0026416:4114-4133 | Msa1428870:intron | 35.0% | |
| GATGTAACACTTTGATATGG+TGG | + | tig0026416:4145-4164 | Msa1428870:intron | 35.0% | |
| TCTGCATTGTTTGAATGTGA+TGG | + | tig0026416:4283-4302 | Msa1428870:intron | 35.0% | |
| ATAGACCTCACAACATTAGT+AGG | + | tig0026416:4341-4360 | Msa1428870:intron | 35.0% | |
| AAACCACATCACCAACATAA+GGG | + | tig0026416:4541-4560 | Msa1428870:intron | 35.0% | |
| GAAACAAAAGGCCTAAAAAC+AGG | + | tig0026416:4583-4602 | Msa1428870:intron | 35.0% | |
| GAACAAAAGGCCTAAAAACA+GGG | + | tig0026416:4626-4645 | Msa1428870:intron | 35.0% | |
| !! | GTATGTTGTTCCCTGTTTTT+AGG | - | tig0026416:4639-4658 | None:intergenic | 35.0% |
| ! | ACAGCACTATTGCTTAGTTT+TGG | + | tig0026416:4763-4782 | Msa1428870:intron | 35.0% |
| TGTTGCGTATACATGAACAT+TGG | + | tig0026416:5056-5075 | Msa1428870:intron | 35.0% | |
| TGGAACTAAATGGCATATGA+TGG | - | tig0026416:5083-5102 | None:intergenic | 35.0% | |
| CATACCCTTGACCTAAATAA+GGG | + | tig0026416:5101-5120 | Msa1428870:intron | 35.0% | |
| ! | ACTTCCCTTATTTAGGTCAA+GGG | - | tig0026416:5108-5127 | None:intergenic | 35.0% |
| TAAAAGTGATCCTTCTTTCG+GGG | - | tig0026416:5322-5341 | None:intergenic | 35.0% | |
| GTAAAAGTGATCCTTCTTTC+GGG | - | tig0026416:5323-5342 | None:intergenic | 35.0% | |
| TTGTGTAGTTATCTTGGCTA+TGG | + | tig0026416:5466-5485 | Msa1428870:intron | 35.0% | |
| ATTACCAGTGTTGTCAATTG+TGG | - | tig0026416:5779-5798 | None:intergenic | 35.0% | |
| ! | TGTACAGAGTACAGTTCTTT+TGG | - | tig0026416:5813-5832 | None:intergenic | 35.0% |
| TAACTAGCAAAGAAGTCAAG+TGG | + | tig0026416:5887-5906 | Msa1428870:intron | 35.0% | |
| AACTAGCAAAGAAGTCAAGT+GGG | + | tig0026416:5888-5907 | Msa1428870:intron | 35.0% | |
| ATCAAACGTGGCATAATTCT+TGG | + | tig0026416:6004-6023 | Msa1428870:intron | 35.0% | |
| TCAAACGTGGCATAATTCTT+GGG | + | tig0026416:6005-6024 | Msa1428870:intron | 35.0% | |
| CCGGTGCATTAGAATTAAAT+TGG | - | tig0026416:6042-6061 | None:intergenic | 35.0% | |
| GGCACTAAAATATTACATGC+AGG | - | tig0026416:6325-6344 | None:intergenic | 35.0% | |
| !! | AGCTTTATTTGGATGCAAGA+AGG | + | tig0026416:6359-6378 | Msa1428870:CDS | 35.0% |
| GGTTTATTGAAGAACACGTT+AGG | + | tig0026416:6380-6399 | Msa1428870:CDS | 35.0% | |
| !! | AGCTCAGTTCTTTGAAATAG+TGG | + | tig0026416:6894-6913 | Msa1428870:CDS | 35.0% |
| TTGTAGACCCTGTTATAGAA+AGG | + | tig0026416:7036-7055 | Msa1428870:CDS | 35.0% | |
| TAAAGATGATACAGCTCTTG+TGG | + | tig0026416:7527-7546 | Msa1428870:CDS | 35.0% | |
| CAATCCTCACAGATTTGTAA+TGG | - | tig0026416:8018-8037 | None:intergenic | 35.0% | |
| CTTCTATTATTGCTGTATGG+TGG | + | tig0026416:8038-8057 | Msa1428870:intron | 35.0% | |
| AGCGCCAATCATTTAATATC+TGG | + | tig0026416:8178-8197 | Msa1428870:intron | 35.0% | |
| ! | TTCAGTATTGTTACTTCCAG+AGG | - | tig0026416:8486-8505 | None:intergenic | 35.0% |
| TACCGACAACAGAATTATGT+AGG | - | tig0026416:8681-8700 | None:intergenic | 35.0% | |
| GTAATTTGAGGAGTCCTTAA+CGG | - | tig0026416:8775-8794 | None:intergenic | 35.0% | |
| GTGCAAACTTCTGTAATTTG+AGG | - | tig0026416:8787-8806 | None:intergenic | 35.0% | |
| GAAATGAAAGAGGTTCAGGT+AGG | - | tig0026416:2799-2818 | None:intergenic | 40.0% | |
| AGAATCGAGATCGGAGAATT+TGG | - | tig0026416:2860-2879 | None:intergenic | 40.0% | |
| CGTATTTGAGGAAATTCCAG+CGG | - | tig0026416:3103-3122 | None:intergenic | 40.0% | |
| CTAGCGTGAATTGTTGTGTT+TGG | + | tig0026416:3800-3819 | Msa1428870:intron | 40.0% | |
| ! | GCACTGACACTTCTAATTGA+AGG | - | tig0026416:3970-3989 | None:intergenic | 40.0% |
| CGAGTTGCAAAATTTGTGTG+TGG | + | tig0026416:4070-4089 | Msa1428870:intron | 40.0% | |
| ! | TATTGGAGGTGTGGTATCTT+TGG | + | tig0026416:4123-4142 | Msa1428870:intron | 40.0% |
| GTCAACCTACTAATGTTGTG+AGG | - | tig0026416:4349-4368 | None:intergenic | 40.0% | |
| !! | TATGTTGGTGATGTGGTTTG+TGG | - | tig0026416:4540-4559 | None:intergenic | 40.0% |
| CAAACCACATCACCAACATA+AGG | + | tig0026416:4540-4559 | Msa1428870:intron | 40.0% | |
| !! | GTCAGTTGTTCCCTGTTTTT+AGG | - | tig0026416:4597-4616 | None:intergenic | 40.0% |
| GGGAACAACTGACTAAAAAC+AGG | + | tig0026416:4604-4623 | Msa1428870:intron | 40.0% | |
| GGAACAAAAGGCCTAAAAAC+AGG | + | tig0026416:4625-4644 | Msa1428870:intron | 40.0% | |
| !!! | CTTAGTTTTGGAGCTTTGCA+TGG | + | tig0026416:4775-4794 | Msa1428870:intron | 40.0% |
| !!! | TTTTGGAGCTTTGCATGGTT+AGG | + | tig0026416:4780-4799 | Msa1428870:intron | 40.0% |
| CTTGCAGAAATTTCAAGGGA+TGG | + | tig0026416:4889-4908 | Msa1428870:intron | 40.0% | |
| TGGCGTACAGAATAAAGCTA+GGG | - | tig0026416:4944-4963 | None:intergenic | 40.0% | |
| ! | GTCAAGGGTATGGAACTAAA+TGG | - | tig0026416:5093-5112 | None:intergenic | 40.0% |
| ! | CCTTATTTAGGTCAAGGGTA+TGG | - | tig0026416:5103-5122 | None:intergenic | 40.0% |
| CCATACCCTTGACCTAAATA+AGG | + | tig0026416:5100-5119 | Msa1428870:intron | 40.0% | |
| ! | GACTTCCCTTATTTAGGTCA+AGG | - | tig0026416:5109-5128 | None:intergenic | 40.0% |
| ! | CCTAAGGACTTCCCTTATTT+AGG | - | tig0026416:5115-5134 | None:intergenic | 40.0% |
| CCTAAATAAGGGAAGTCCTT+AGG | + | tig0026416:5112-5131 | Msa1428870:intron | 40.0% | |
| ATGTTTCTCCAAGTTGCCTA+AGG | - | tig0026416:5131-5150 | None:intergenic | 40.0% | |
| GTGGGAAAGTTAAAGTGAGA+GGG | + | tig0026416:5186-5205 | Msa1428870:intron | 40.0% | |
| TGTTCCTGCTTTGCATGAAA+GGG | + | tig0026416:5287-5306 | Msa1428870:intron | 40.0% | |
| CGATTCATGTTTGTACTTGC+AGG | - | tig0026416:5410-5429 | None:intergenic | 40.0% | |
| GCAAGCAGCAATTTATCCAT+GGG | - | tig0026416:5552-5571 | None:intergenic | 40.0% | |
| TGCAAGCAGCAATTTATCCA+TGG | - | tig0026416:5553-5572 | None:intergenic | 40.0% | |
| !! | TGTGGATAGCGGAAATTTGT+GGG | - | tig0026416:5761-5780 | None:intergenic | 40.0% |
| !! | TTGTGGATAGCGGAAATTTG+TGG | - | tig0026416:5762-5781 | None:intergenic | 40.0% |
| GTGTTGTCAATTGTGGATAG+CGG | - | tig0026416:5772-5791 | None:intergenic | 40.0% | |
| CTATCCACAATTGACAACAC+TGG | + | tig0026416:5772-5791 | Msa1428870:intron | 40.0% | |
| TCCTCTGTAGCATTTGATCA+GGG | + | tig0026416:5859-5878 | Msa1428870:intron | 40.0% | |
| !!! | ATGCACCGGTTTTGATTTTG+AGG | + | tig0026416:6053-6072 | Msa1428870:intron | 40.0% |
| TAAAGCTCTACTGCTTTAGC+AGG | - | tig0026416:6346-6365 | None:intergenic | 40.0% | |
| ! | TGTATGGTTCTGTATAACCC+TGG | - | tig0026416:6511-6530 | None:intergenic | 40.0% |
| !! | TGGCAGACTTTTAAAAGACC+CGG | + | tig0026416:6847-6866 | Msa1428870:CDS | 40.0% |
| GATCCAGCCTTTCTATAACA+GGG | - | tig0026416:7046-7065 | None:intergenic | 40.0% | |
| CTGCTACTAAGTATCAGGAT+GGG | + | tig0026416:7099-7118 | Msa1428870:CDS | 40.0% | |
| ! | TTTTTCCCTTTGCCTGTCAT+TGG | + | tig0026416:7385-7404 | Msa1428870:intron | 40.0% |
| !! | GTAGGCAACTTTCTAAAGCA+TGG | - | tig0026416:7464-7483 | None:intergenic | 40.0% |
| TTAATAGGGACACAGTTCTC+AGG | - | tig0026416:7489-7508 | None:intergenic | 40.0% | |
| ATGCACTTACACTCAAGGAA+TGG | - | tig0026416:7561-7580 | None:intergenic | 40.0% | |
| !! | CTGCATATGGATAATGGAGA+AGG | - | tig0026416:7661-7680 | None:intergenic | 40.0% |
| ATATTCCGAGTGAATTCCTC+AGG | + | tig0026416:7741-7760 | Msa1428870:CDS | 40.0% | |
| ! | TATGCAATTTGAAACGCCTG+AGG | - | tig0026416:7760-7779 | None:intergenic | 40.0% |
| CAGGCGTTTCAAATTGCATA+AGG | + | tig0026416:7760-7779 | Msa1428870:CDS | 40.0% | |
| TGGGAACTATATTGCAACCA+AGG | + | tig0026416:7829-7848 | Msa1428870:intron | 40.0% | |
| GTAATTAACCAGACAAGGGT+GGG | - | tig0026416:7963-7982 | None:intergenic | 40.0% | |
| TGTAATTAACCAGACAAGGG+TGG | - | tig0026416:7964-7983 | None:intergenic | 40.0% | |
| ! | ATTATTGCTGTATGGTGGTG+TGG | + | tig0026416:8043-8062 | Msa1428870:intron | 40.0% |
| ! | TTATTGCTGTATGGTGGTGT+GGG | + | tig0026416:8044-8063 | Msa1428870:intron | 40.0% |
| TGAATTAGGAGTGACATGGT+GGG | - | tig0026416:8280-8299 | None:intergenic | 40.0% | |
| AAGGTGAATTAGGAGTGACA+TGG | - | tig0026416:8284-8303 | None:intergenic | 40.0% | |
| ATGTTGGCGGAAATAAGACA+GGG | - | tig0026416:8412-8431 | None:intergenic | 40.0% | |
| AATGTTGGCGGAAATAAGAC+AGG | - | tig0026416:8413-8432 | None:intergenic | 40.0% | |
| ! | TTCCGCCAACATTTTTACTC+TGG | + | tig0026416:8420-8439 | Msa1428870:intron | 40.0% |
| CACCAGAGTAAAAATGTTGG+CGG | - | tig0026416:8425-8444 | None:intergenic | 40.0% | |
| ! | TGGTGTTTTCCAAATGATGC+AGG | + | tig0026416:8440-8459 | Msa1428870:intron | 40.0% |
| TCCAAATGATGCAGGAAAAC+CGG | + | tig0026416:8448-8467 | Msa1428870:intron | 40.0% | |
| ! | TGGTTCAAGACTCTAGTTCA+GGG | - | tig0026416:8647-8666 | None:intergenic | 40.0% |
| ! | ATGGTTCAAGACTCTAGTTC+AGG | - | tig0026416:8648-8667 | None:intergenic | 40.0% |
| GGCCTACATAATTCTGTTGT+CGG | + | tig0026416:8676-8695 | Msa1428870:three_prime_UTR | 40.0% | |
| ! | AAGAGGTTCAGGTAGGGTTT+TGG | - | tig0026416:2792-2811 | None:intergenic | 45.0% |
| TGAGGAAATTCCAGCGGTTA+GGG | - | tig0026416:3097-3116 | None:intergenic | 45.0% | |
| TTGAGGAAATTCCAGCGGTT+AGG | - | tig0026416:3098-3117 | None:intergenic | 45.0% | |
| TTCCTCAAATACGCTGCCAT+CGG | + | tig0026416:3110-3129 | Msa1428870:CDS | 45.0% | |
| ATCAGGTGGAGTGTACTTAG+CGG | - | tig0026416:3373-3392 | None:intergenic | 45.0% | |
| ! | CACATATGTGGGTGTCATGT+CGG | + | tig0026416:3909-3928 | Msa1428870:intron | 45.0% |
| TATTGGACAGTGACACGTGT+TGG | + | tig0026416:3932-3951 | Msa1428870:intron | 45.0% | |
| !! | TAGAAGTGTCAGTGCTACAG+AGG | + | tig0026416:3975-3994 | Msa1428870:intron | 45.0% |
| AACCAAGCATAAGACGAGCA+AGG | + | tig0026416:4481-4500 | Msa1428870:intron | 45.0% | |
| !! | GTTCCCTTATGTTGGTGATG+TGG | - | tig0026416:4547-4566 | None:intergenic | 45.0% |
| AGTCGGTTGTTCCCTTATGT+TGG | - | tig0026416:4555-4574 | None:intergenic | 45.0% | |
| GCAATAGTGCTGTCCACAAA+AGG | - | tig0026416:4756-4775 | None:intergenic | 45.0% | |
| GTATACTCAACTGCAGTGAC+AGG | + | tig0026416:4911-4930 | Msa1428870:CDS | 45.0% | |
| GGCGTACAGAATAAAGCTAG+GGG | - | tig0026416:4943-4962 | None:intergenic | 45.0% | |
| GTGGCGTACAGAATAAAGCT+AGG | - | tig0026416:4945-4964 | None:intergenic | 45.0% | |
| AACTTGGAGAAACATGTGCC+TGG | + | tig0026416:5136-5155 | Msa1428870:intron | 45.0% | |
| CTTTCCCACCTCTATCCATT+CGG | - | tig0026416:5175-5194 | None:intergenic | 45.0% | |
| GGTGGGAAAGTTAAAGTGAG+AGG | + | tig0026416:5185-5204 | Msa1428870:intron | 45.0% | |
| TCCTCTCAGGATAACTGCTT+GGG | - | tig0026416:5212-5231 | None:intergenic | 45.0% | |
| TATCCTGAGAGGAGTTGAGA+AGG | + | tig0026416:5219-5238 | Msa1428870:intron | 45.0% | |
| ATCCTGAGAGGAGTTGAGAA+GGG | + | tig0026416:5220-5239 | Msa1428870:intron | 45.0% | |
| AGGAGTTGAGAAGGGAGTTA+GGG | + | tig0026416:5228-5247 | Msa1428870:intron | 45.0% | |
| CTGTTCCTGCTTTGCATGAA+AGG | + | tig0026416:5286-5305 | Msa1428870:intron | 45.0% | |
| GTTCCTGCTTTGCATGAAAG+GGG | + | tig0026416:5288-5307 | Msa1428870:intron | 45.0% | |
| !! | CTTTGCATGAAAGGGGTACT+TGG | + | tig0026416:5295-5314 | Msa1428870:intron | 45.0% |
| ! | AGTCAAGGGCGGTATGTTTT+GGG | - | tig0026416:5351-5370 | None:intergenic | 45.0% |
| AATATGTAGTAGGGGTCCCA+TGG | + | tig0026416:5533-5552 | Msa1428870:intron | 45.0% | |
| CTGATCAAATGCTACAGAGG+AGG | - | tig0026416:5860-5879 | None:intergenic | 45.0% | |
| CTCCTCTGTAGCATTTGATC+AGG | + | tig0026416:5858-5877 | Msa1428870:intron | 45.0% | |
| CAAAGAAGTCAAGTGGGCAT+TGG | + | tig0026416:5894-5913 | Msa1428870:intron | 45.0% | |
| GTTGTATTGTTAAGGAGGGC+TGG | + | tig0026416:5921-5940 | Msa1428870:intron | 45.0% | |
| TATAACCCTGGAAGGAAGCA+TGG | - | tig0026416:6499-6518 | None:intergenic | 45.0% | |
| ! | TGGTTCTGTATAACCCTGGA+AGG | - | tig0026416:6507-6526 | None:intergenic | 45.0% |
| ! | AACCTCACATGCACCGTTTT+GGG | + | tig0026416:6636-6655 | Msa1428870:intron | 45.0% |
| ATGTGAAGCGAGATACAAGC+TGG | + | tig0026416:6827-6846 | Msa1428870:intron | 45.0% | |
| !! | TTCCAAGAAGGCATCAACTC+CGG | - | tig0026416:6869-6888 | None:intergenic | 45.0% |
| CTGAGCTAGATGTTCCAAGA+AGG | - | tig0026416:6881-6900 | None:intergenic | 45.0% | |
| AGACCCTGTTATAGAAAGGC+TGG | + | tig0026416:7040-7059 | Msa1428870:CDS | 45.0% | |
| GGATCCAGCCTTTCTATAAC+AGG | - | tig0026416:7047-7066 | None:intergenic | 45.0% | |
| ! | TGGATCCTAAGCACTGCATT+AGG | + | tig0026416:7060-7079 | Msa1428870:CDS | 45.0% |
| CTGTACCTAATGCAGTGCTT+AGG | - | tig0026416:7068-7087 | None:intergenic | 45.0% | |
| ! | CTAAGCACTGCATTAGGTAC+AGG | + | tig0026416:7066-7085 | Msa1428870:CDS | 45.0% |
| GAGACCTGCTACTAAGTATC+AGG | + | tig0026416:7094-7113 | Msa1428870:CDS | 45.0% | |
| CCATCCTGATACTTAGTAGC+AGG | - | tig0026416:7101-7120 | None:intergenic | 45.0% | |
| CCTGCTACTAAGTATCAGGA+TGG | + | tig0026416:7098-7117 | Msa1428870:CDS | 45.0% | |
| TGAAAGATCCTGCCAATGAC+AGG | - | tig0026416:7400-7419 | None:intergenic | 45.0% | |
| ACTGTGTCCCTATTAAGCCA+TGG | + | tig0026416:7493-7512 | Msa1428870:CDS | 45.0% | |
| CTGTGTCCCTATTAAGCCAT+GGG | + | tig0026416:7494-7513 | Msa1428870:CDS | 45.0% | |
| TCTGCACCCATGGCTTAATA+GGG | - | tig0026416:7503-7522 | None:intergenic | 45.0% | |
| TCTTTATCAGTCTGCACCCA+TGG | - | tig0026416:7513-7532 | None:intergenic | 45.0% | |
| GAGGAATGCACTTACACTCA+AGG | - | tig0026416:7566-7585 | None:intergenic | 45.0% | |
| GTACGGGCAATAACTGCATA+TGG | - | tig0026416:7674-7693 | None:intergenic | 45.0% | |
| !! | TTATATCAGCCGGGCTAGTA+CGG | - | tig0026416:7691-7710 | None:intergenic | 45.0% |
| !! | AGCACTGGTCTTATATCAGC+CGG | - | tig0026416:7701-7720 | None:intergenic | 45.0% |
| CACTCGGAATATCACATCCT+TGG | - | tig0026416:7733-7752 | None:intergenic | 45.0% | |
| AAACGCCTGAGGAATTCACT+CGG | - | tig0026416:7749-7768 | None:intergenic | 45.0% | |
| GTGAATTAGGAGTGACATGG+TGG | - | tig0026416:8281-8300 | None:intergenic | 45.0% | |
| ! | TCCGGTTTTCCTGCATCATT+TGG | - | tig0026416:8452-8471 | None:intergenic | 45.0% |
| AAATGATGCAGGAAAACCGG+AGG | + | tig0026416:8451-8470 | Msa1428870:intron | 45.0% | |
| TTGAAGCCACTGCAAAATCG+AGG | + | tig0026416:8579-8598 | Msa1428870:three_prime_UTR | 45.0% | |
| ! | ATCACTCCTCGATTTTGCAG+TGG | - | tig0026416:8588-8607 | None:intergenic | 45.0% |
| !!! | TAAATATATAATTAATTTTG+AGG | + | tig0026416:4995-5014 | Msa1428870:intron | 5.0% |
| !!! | GTTCAGGTAGGGTTTTGGCT+TGG | - | tig0026416:2787-2806 | None:intergenic | 50.0% |
| CGACGGAGAAGAATCGAGAT+CGG | - | tig0026416:2869-2888 | None:intergenic | 50.0% | |
| AGGAGGTTGAGGAGTGACTT+TGG | - | tig0026416:2925-2944 | None:intergenic | 50.0% | |
| GAGAAACATGGAGGAGGTTG+AGG | - | tig0026416:2936-2955 | None:intergenic | 50.0% | |
| GTGGATGAGAAACATGGAGG+AGG | - | tig0026416:2942-2961 | None:intergenic | 50.0% | |
| TGAATGAGTAGCAGCAGGAG+CGG | - | tig0026416:2967-2986 | None:intergenic | 50.0% | |
| GAAGAAAAAGGAGGAGGTGG+AGG | - | tig0026416:3065-3084 | None:intergenic | 50.0% | |
| GTGGAAGAAAAAGGAGGAGG+TGG | - | tig0026416:3068-3087 | None:intergenic | 50.0% | |
| GAAGCGGTGGAAGAAAAAGG+AGG | - | tig0026416:3074-3093 | None:intergenic | 50.0% | |
| GAGGAAATTCCAGCGGTTAG+GGG | - | tig0026416:3096-3115 | None:intergenic | 50.0% | |
| GCTAAGTACACTCCACCTGA+TGG | + | tig0026416:3372-3391 | Msa1428870:CDS | 50.0% | |
| AGAGAAGTAGCTCCATCAGG+TGG | - | tig0026416:3387-3406 | None:intergenic | 50.0% | |
| TCGAGAGAAGTAGCTCCATC+AGG | - | tig0026416:3390-3409 | None:intergenic | 50.0% | |
| ! | TGTGGGTGTCATGTCGGTAT+TGG | + | tig0026416:3915-3934 | Msa1428870:intron | 50.0% |
| CAGTGACACGTGTTGGACAT+CGG | + | tig0026416:3939-3958 | Msa1428870:intron | 50.0% | |
| GTGGCTCTTCGAATACGAAC+TGG | + | tig0026416:4041-4060 | Msa1428870:intron | 50.0% | |
| TACTCAACTGCAGTGACAGG+TGG | + | tig0026416:4914-4933 | Msa1428870:intron | 50.0% | |
| ACTCAACTGCAGTGACAGGT+GGG | + | tig0026416:4915-4934 | Msa1428870:intron | 50.0% | |
| GTGTCTCTTCCCTTGGACTT+CGG | + | tig0026416:5030-5049 | Msa1428870:intron | 50.0% | |
| TGTCTCTTCCCTTGGACTTC+GGG | + | tig0026416:5031-5050 | Msa1428870:intron | 50.0% | |
| GCAACATTCCCGAAGTCCAA+GGG | - | tig0026416:5042-5061 | None:intergenic | 50.0% | |
| AGGGAAGTCCTTAGGCAACT+TGG | + | tig0026416:5120-5139 | Msa1428870:intron | 50.0% | |
| GAGTCCGAATGGATAGAGGT+GGG | + | tig0026416:5168-5187 | Msa1428870:intron | 50.0% | |
| CTCCTCTCAGGATAACTGCT+TGG | - | tig0026416:5213-5232 | None:intergenic | 50.0% | |
| GAGGAGTTGAGAAGGGAGTT+AGG | + | tig0026416:5227-5246 | Msa1428870:intron | 50.0% | |
| AGGGAAAAGAACCTCCCACT+AGG | + | tig0026416:5247-5266 | Msa1428870:intron | 50.0% | |
| GAAAAGAACCTCCCACTAGG+TGG | + | tig0026416:5250-5269 | Msa1428870:intron | 50.0% | |
| CCTTCCTCAAACCACCTAGT+GGG | - | tig0026416:5264-5283 | None:intergenic | 50.0% | |
| CCACTAGGTGGTTTGAGGAA+GGG | + | tig0026416:5262-5281 | Msa1428870:intron | 50.0% | |
| CACTAGGTGGTTTGAGGAAG+GGG | + | tig0026416:5263-5282 | Msa1428870:intron | 50.0% | |
| GTACCCCTTTCATGCAAAGC+AGG | - | tig0026416:5294-5313 | None:intergenic | 50.0% | |
| ! | CAGTCAAGGGCGGTATGTTT+TGG | - | tig0026416:5352-5371 | None:intergenic | 50.0% |
| CAAAACATACCGCCCTTGAC+TGG | + | tig0026416:5350-5369 | Msa1428870:intron | 50.0% | |
| ! | AGTGTTGTTCCAGTCAAGGG+CGG | - | tig0026416:5362-5381 | None:intergenic | 50.0% |
| ! | GGCAGTGTTGTTCCAGTCAA+GGG | - | tig0026416:5365-5384 | None:intergenic | 50.0% |
| ! | TGGCAGTGTTGTTCCAGTCA+AGG | - | tig0026416:5366-5385 | None:intergenic | 50.0% |
| TGACTGGAACAACACTGCCA+AGG | + | tig0026416:5366-5385 | Msa1428870:intron | 50.0% | |
| GACTGGAACAACACTGCCAA+GGG | + | tig0026416:5367-5386 | Msa1428870:intron | 50.0% | |
| AACACTGCCAAGGGTAGGAA+TGG | + | tig0026416:5376-5395 | Msa1428870:intron | 50.0% | |
| AGTACGACCATTCCTACCCT+TGG | - | tig0026416:5386-5405 | None:intergenic | 50.0% | |
| GCTGCTTGCATATGCGCATT+AGG | + | tig0026416:5563-5582 | Msa1428870:intron | 50.0% | |
| GTTATGCTGCGATGTCGTAG+CGG | + | tig0026416:5656-5675 | Msa1428870:intron | 50.0% | |
| GCCCTGATCAAATGCTACAG+AGG | - | tig0026416:5863-5882 | None:intergenic | 50.0% | |
| TTTGGCCATGCTTCCTTCCA+GGG | + | tig0026416:6491-6510 | Msa1428870:intron | 50.0% | |
| GGAAGGAGCTTGTCTGTGTA+TGG | - | tig0026416:6527-6546 | None:intergenic | 50.0% | |
| CCTGAGGAAGCAAATCTGGA+AGG | - | tig0026416:6544-6563 | None:intergenic | 50.0% | |
| ! | CCTTCCAGATTTGCTTCCTC+AGG | + | tig0026416:6541-6560 | Msa1428870:CDS | 50.0% |
| TGCTCCTGAGGAAGCAAATC+TGG | - | tig0026416:6548-6567 | None:intergenic | 50.0% | |
| GTGAACACATGTTGCTCCTG+AGG | - | tig0026416:6560-6579 | None:intergenic | 50.0% | |
| ! | CAACCTCACATGCACCGTTT+TGG | + | tig0026416:6635-6654 | Msa1428870:intron | 50.0% |
| ! | ACCTCACATGCACCGTTTTG+GGG | + | tig0026416:6637-6656 | Msa1428870:intron | 50.0% |
| !! | TCCAAGAAGGCATCAACTCC+GGG | - | tig0026416:6868-6887 | None:intergenic | 50.0% |
| TCCTGCCAATGACAGGCAAA+GGG | - | tig0026416:7393-7412 | None:intergenic | 50.0% | |
| ATCCTGCCAATGACAGGCAA+AGG | - | tig0026416:7394-7413 | None:intergenic | 50.0% | |
| ! | GGACACAGTTCTCAGGTTGT+AGG | - | tig0026416:7482-7501 | None:intergenic | 50.0% |
| GTCTGCACCCATGGCTTAAT+AGG | - | tig0026416:7504-7523 | None:intergenic | 50.0% | |
| AGTTATTGCCCGTACTAGCC+CGG | + | tig0026416:7679-7698 | Msa1428870:intron | 50.0% | |
| !! | TATATCAGCCGGGCTAGTAC+GGG | - | tig0026416:7690-7709 | None:intergenic | 50.0% |
| !! | GCACTGGTCTTATATCAGCC+GGG | - | tig0026416:7700-7719 | None:intergenic | 50.0% |
| ! | TGTATGGTGGTGTGGGACAA+GGG | + | tig0026416:8051-8070 | Msa1428870:intron | 50.0% |
| !!! | AGGGTTTTGGCTTGGCTTGG+TGG | - | tig0026416:2779-2798 | None:intergenic | 55.0% |
| !!! | GGTAGGGTTTTGGCTTGGCT+TGG | - | tig0026416:2782-2801 | None:intergenic | 55.0% |
| CGATGACGATGATGCTGCGA+CGG | - | tig0026416:2886-2905 | None:intergenic | 55.0% | |
| GTGACTTTGGCGAAGCGGAA+TGG | - | tig0026416:2912-2931 | None:intergenic | 55.0% | |
| GAGGAGTGACTTTGGCGAAG+CGG | - | tig0026416:2917-2936 | None:intergenic | 55.0% | |
| GCGGTGGATGAGAAACATGG+AGG | - | tig0026416:2945-2964 | None:intergenic | 55.0% | |
| GGAGGTGAATGAGTAGCAGC+AGG | - | tig0026416:2972-2991 | None:intergenic | 55.0% | |
| GGAAGAAGGTGGAGGAGTAG+CGG | - | tig0026416:3033-3052 | None:intergenic | 55.0% | |
| GAAAAAGGAGGAGGTGGAGG+AGG | - | tig0026416:3062-3081 | None:intergenic | 55.0% | |
| GCGGTGGAAGAAAAAGGAGG+AGG | - | tig0026416:3071-3090 | None:intergenic | 55.0% | |
| GGGGAAGCGGTGGAAGAAAA+AGG | - | tig0026416:3077-3096 | None:intergenic | 55.0% | |
| ATTCCAGCGGTTAGGGGAAG+CGG | - | tig0026416:3090-3109 | None:intergenic | 55.0% | |
| CACCGATGGCAGCGTATTTG+AGG | - | tig0026416:3115-3134 | None:intergenic | 55.0% | |
| ! | GTAAGAGGCGTAACCGGCTA+CGG | - | tig0026416:3156-3175 | None:intergenic | 55.0% |
| GTAGCCGGTTACGCCTCTTA+CGG | + | tig0026416:3155-3174 | Msa1428870:CDS | 55.0% | |
| ! | CGAACCGTAAGAGGCGTAAC+CGG | - | tig0026416:3162-3181 | None:intergenic | 55.0% |
| CGCCTTGCTCGTCTTATGCT+TGG | - | tig0026416:4486-4505 | None:intergenic | 55.0% | |
| CATGCGAGTGTCTCTTCCCT+TGG | + | tig0026416:5023-5042 | Msa1428870:intron | 55.0% | |
| CGCAACATTCCCGAAGTCCA+AGG | - | tig0026416:5043-5062 | None:intergenic | 55.0% | |
| AGAAACATGTGCCTGGCGTG+TGG | + | tig0026416:5143-5162 | Msa1428870:intron | 55.0% | |
| GAAACATGTGCCTGGCGTGT+GGG | + | tig0026416:5144-5163 | Msa1428870:intron | 55.0% | |
| CGAGTCCGAATGGATAGAGG+TGG | + | tig0026416:5167-5186 | Msa1428870:intron | 55.0% | |
| GCCCAAGCAGTTATCCTGAG+AGG | + | tig0026416:5208-5227 | Msa1428870:intron | 55.0% | |
| CTCCCTTCTCAACTCCTCTC+AGG | - | tig0026416:5225-5244 | None:intergenic | 55.0% | |
| ACCTCCCACTAGGTGGTTTG+AGG | + | tig0026416:5257-5276 | Msa1428870:intron | 55.0% | |
| TCCTCAAACCACCTAGTGGG+AGG | - | tig0026416:5261-5280 | None:intergenic | 55.0% | |
| CCCACTAGGTGGTTTGAGGA+AGG | + | tig0026416:5261-5280 | Msa1428870:intron | 55.0% | |
| CCCTTCCTCAAACCACCTAG+TGG | - | tig0026416:5265-5284 | None:intergenic | 55.0% | |
| GGTACTTGGTCCCCGAAAGA+AGG | + | tig0026416:5309-5328 | Msa1428870:intron | 55.0% | |
| GGAACAACACTGCCAAGGGT+AGG | + | tig0026416:5371-5390 | Msa1428870:intron | 55.0% | |
| CTTTGGCCATGCTTCCTTCC+AGG | + | tig0026416:6490-6509 | Msa1428870:intron | 55.0% | |
| TCCCCAAAACGGTGCATGTG+AGG | - | tig0026416:6641-6660 | None:intergenic | 55.0% | |
| !! | ACCCGGAGTTGATGCCTTCT+TGG | + | tig0026416:6864-6883 | Msa1428870:CDS | 55.0% |
| TCCCTTTGCCTGTCATTGGC+AGG | + | tig0026416:7389-7408 | Msa1428870:intron | 55.0% | |
| CCTTGGTAAGACTGCAGCAC+TGG | - | tig0026416:7716-7735 | None:intergenic | 55.0% | |
| CCAGTGCTGCAGTCTTACCA+AGG | + | tig0026416:7713-7732 | Msa1428870:CDS | 55.0% | |
| AAACTACGCCCACCCTTGTC+TGG | + | tig0026416:7952-7971 | Msa1428870:intron | 55.0% | |
| ! | CTGTATGGTGGTGTGGGACA+AGG | + | tig0026416:8050-8069 | Msa1428870:intron | 55.0% |
| GCGGCGGTGGATGAGAAACA+TGG | - | tig0026416:2948-2967 | None:intergenic | 60.0% | |
| ATGAGTAGCAGCAGGAGCGG+CGG | - | tig0026416:2964-2983 | None:intergenic | 60.0% | |
| GAAGGAGTGGCAGAAGGAGG+AGG | - | tig0026416:2993-3012 | None:intergenic | 60.0% | |
| GGAGAAGGAGTGGCAGAAGG+AGG | - | tig0026416:2996-3015 | None:intergenic | 60.0% | |
| GGTGGAGAAGGAGTGGCAGA+AGG | - | tig0026416:2999-3018 | None:intergenic | 60.0% | |
| GAAGAGGGAGGAGGTGGAGA+AGG | - | tig0026416:3011-3030 | None:intergenic | 60.0% | |
| ! | GGTGGAGGAGTAGCGGAAGA+GGG | - | tig0026416:3026-3045 | None:intergenic | 60.0% |
| ! | AGGTGGAGGAGTAGCGGAAG+AGG | - | tig0026416:3027-3046 | None:intergenic | 60.0% |
| ! | GCTGCCATCGGTGCCTTAAC+CGG | + | tig0026416:3122-3141 | Msa1428870:CDS | 60.0% |
| !! | GGTTCCGGTTAAGGCACCGA+TGG | - | tig0026416:3129-3148 | None:intergenic | 60.0% |
| TACGGCGGTGGTTCCGGTTA+AGG | - | tig0026416:3138-3157 | None:intergenic | 60.0% | |
| GGGCGAGTCCGAATGGATAG+AGG | + | tig0026416:5164-5183 | Msa1428870:intron | 60.0% | |
| GTGTGGGACAAGGGACAGTC+TGG | + | tig0026416:8060-8079 | Msa1428870:intron | 60.0% | |
| !! | GCTTGGCTTGGTGGAGACGC+CGG | - | tig0026416:2770-2789 | None:intergenic | 65.0% |
| GGAGTGGCAGAAGGAGGAGG+AGG | - | tig0026416:2990-3009 | None:intergenic | 65.0% | |
| GGGAGGAGGTGGAGAAGGAG+TGG | - | tig0026416:3006-3025 | None:intergenic | 65.0% | |
| ! | GTAGCGGAAGAGGGAGGAGG+TGG | - | tig0026416:3017-3036 | None:intergenic | 65.0% |
| ! | GGAGTAGCGGAAGAGGGAGG+AGG | - | tig0026416:3020-3039 | None:intergenic | 65.0% |
| ! | GGAGGAGTAGCGGAAGAGGG+AGG | - | tig0026416:3023-3042 | None:intergenic | 65.0% |
| ! | GGAGTGGCGGAAGAAGGTGG+AGG | - | tig0026416:3041-3060 | None:intergenic | 65.0% |
| ! | GGAGGAGTGGCGGAAGAAGG+TGG | - | tig0026416:3044-3063 | None:intergenic | 65.0% |
| ! | GGAGGAGGAGTGGCGGAAGA+AGG | - | tig0026416:3047-3066 | None:intergenic | 65.0% |
| AGGAGGTGGAGGAGGAGTGG+CGG | - | tig0026416:3054-3073 | None:intergenic | 65.0% | |
| AGGAGGAGGTGGAGGAGGAG+TGG | - | tig0026416:3057-3076 | None:intergenic | 65.0% | |
| ! | AGAGGCGTAACCGGCTACGG+CGG | - | tig0026416:3153-3172 | None:intergenic | 65.0% |
| !! | CCAGAGGCGTCTCTGTCCTC+CGG | - | tig0026416:8470-8489 | None:intergenic | 65.0% |
| AGTAGCAGCAGGAGCGGCGG+TGG | - | tig0026416:2961-2980 | None:intergenic | 70.0% | |
| CCAGCGGTTAGGGGAAGCGG+TGG | - | tig0026416:3087-3106 | None:intergenic | 70.0% | |
| CCACCGCTTCCCCTAACCGC+TGG | + | tig0026416:3084-3103 | Msa1428870:CDS | 70.0% | |
| ACCGGAACCACCGCCGTAGC+CGG | + | tig0026416:3140-3159 | Msa1428870:CDS | 70.0% | |
| ACCGGCTACGGCGGTGGTTC+CGG | - | tig0026416:3144-3163 | None:intergenic | 70.0% | |
| TTCGGACTCGCCCACACGCC+AGG | - | tig0026416:5157-5176 | None:intergenic | 70.0% | |
| GGCGTGTGGGCGAGTCCGAA+TGG | + | tig0026416:5157-5176 | Msa1428870:intron | 70.0% | |
| CCGGAGGACAGAGACGCCTC+TGG | + | tig0026416:8467-8486 | Msa1428870:CDS | 70.0% | |
| GGCGTAACCGGCTACGGCGG+TGG | - | tig0026416:3150-3169 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026416 | gene | 2749 | 9036 | 2749 | ID=Msa1428870;Name=Msa1428870 |
| tig0026416 | mRNA | 2749 | 9036 | 2749 | ID=Msa1428870-mRNA-1;Parent=Msa1428870;Name=Msa1428870-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.9|0.81|1|0.8|0.63|11|541|395 |
| tig0026416 | exon | 2749 | 2884 | 2749 | ID=Msa1428870-mRNA-1:exon:6210;Parent=Msa1428870-mRNA-1 |
| tig0026416 | exon | 2928 | 3176 | 2928 | ID=Msa1428870-mRNA-1:exon:6211;Parent=Msa1428870-mRNA-1 |
| tig0026416 | exon | 3322 | 3410 | 3322 | ID=Msa1428870-mRNA-1:exon:6212;Parent=Msa1428870-mRNA-1 |
| tig0026416 | exon | 4896 | 4932 | 4896 | ID=Msa1428870-mRNA-1:exon:6213;Parent=Msa1428870-mRNA-1 |
| tig0026416 | exon | 6341 | 6402 | 6341 | ID=Msa1428870-mRNA-1:exon:6214;Parent=Msa1428870-mRNA-1 |
| tig0026416 | exon | 6512 | 6625 | 6512 | ID=Msa1428870-mRNA-1:exon:6215;Parent=Msa1428870-mRNA-1 |
| tig0026416 | exon | 6835 | 6939 | 6835 | ID=Msa1428870-mRNA-1:exon:6216;Parent=Msa1428870-mRNA-1 |
| tig0026416 | exon | 7035 | 7133 | 7035 | ID=Msa1428870-mRNA-1:exon:6217;Parent=Msa1428870-mRNA-1 |
| tig0026416 | exon | 7411 | 7570 | 7411 | ID=Msa1428870-mRNA-1:exon:6218;Parent=Msa1428870-mRNA-1 |
| tig0026416 | exon | 7681 | 7783 | 7681 | ID=Msa1428870-mRNA-1:exon:6219;Parent=Msa1428870-mRNA-1 |
| tig0026416 | exon | 8462 | 9036 | 8462 | ID=Msa1428870-mRNA-1:exon:6220;Parent=Msa1428870-mRNA-1 |
| tig0026416 | CDS | 2749 | 2884 | 2749 | ID=Msa1428870-mRNA-1:cds;Parent=Msa1428870-mRNA-1 |
| tig0026416 | CDS | 2928 | 3176 | 2928 | ID=Msa1428870-mRNA-1:cds;Parent=Msa1428870-mRNA-1 |
| tig0026416 | CDS | 3322 | 3410 | 3322 | ID=Msa1428870-mRNA-1:cds;Parent=Msa1428870-mRNA-1 |
| tig0026416 | CDS | 4896 | 4932 | 4896 | ID=Msa1428870-mRNA-1:cds;Parent=Msa1428870-mRNA-1 |
| tig0026416 | CDS | 6341 | 6402 | 6341 | ID=Msa1428870-mRNA-1:cds;Parent=Msa1428870-mRNA-1 |
| tig0026416 | CDS | 6512 | 6625 | 6512 | ID=Msa1428870-mRNA-1:cds;Parent=Msa1428870-mRNA-1 |
| tig0026416 | CDS | 6835 | 6939 | 6835 | ID=Msa1428870-mRNA-1:cds;Parent=Msa1428870-mRNA-1 |
| tig0026416 | CDS | 7035 | 7133 | 7035 | ID=Msa1428870-mRNA-1:cds;Parent=Msa1428870-mRNA-1 |
| tig0026416 | CDS | 7411 | 7570 | 7411 | ID=Msa1428870-mRNA-1:cds;Parent=Msa1428870-mRNA-1 |
| tig0026416 | CDS | 7681 | 7783 | 7681 | ID=Msa1428870-mRNA-1:cds;Parent=Msa1428870-mRNA-1 |
| tig0026416 | CDS | 8462 | 8495 | 8462 | ID=Msa1428870-mRNA-1:cds;Parent=Msa1428870-mRNA-1 |
| tig0026416 | three_prime_UTR | 8496 | 9036 | 8496 | ID=Msa1428870-mRNA-1:three_prime_utr;Parent=Msa1428870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
