Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346350 | XP_003600822.1 | 97.630 | 211 | 5 | 0 | 1 | 211 | 1 | 211 | 3.10e-150 | 432 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346350 | G7JAK9 | 97.630 | 211 | 5 | 0 | 1 | 211 | 1 | 211 | 1.48e-150 | 432 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092440 | Msa1346350 | 0.811477 | 6.865930e-51 | -8.615850e-47 |
| Msa1346350 | Msa1385350 | 0.804164 | 2.463328e-49 | -8.615850e-47 |
| Msa1346350 | Msa1426910 | 0.802513 | 5.412973e-49 | -8.615850e-47 |
| Msa1346350 | Msa1439710 | 0.803605 | 3.218227e-49 | -8.615850e-47 |
| Msa1346350 | Msa1461710 | 0.813767 | 2.166445e-51 | -8.615850e-47 |
| Msa0659210 | Msa1346350 | 0.808616 | 2.837880e-50 | -8.615850e-47 |
| Msa0661320 | Msa1346350 | 0.805513 | 1.287156e-49 | -8.615850e-47 |
| Msa0687450 | Msa1346350 | 0.820027 | 8.518252e-53 | -8.615850e-47 |
| Msa0703660 | Msa1346350 | 0.803212 | 3.882540e-49 | -8.615850e-47 |
| Msa0757800 | Msa1346350 | 0.800136 | 1.660705e-48 | -8.615850e-47 |
| Msa0832090 | Msa1346350 | 0.807631 | 4.600132e-50 | -8.615850e-47 |
| Msa0455740 | Msa1346350 | 0.809392 | 1.935631e-50 | -8.615850e-47 |
| Msa0462880 | Msa1346350 | 0.802647 | 5.080483e-49 | -8.615850e-47 |
| Msa0269520 | Msa1346350 | 0.809518 | 1.818377e-50 | -8.615850e-47 |
| Msa0483740 | Msa1346350 | 0.801578 | 8.426378e-49 | -8.615850e-47 |
| Msa0510290 | Msa1346350 | 0.826875 | 2.133656e-54 | -8.615850e-47 |
| Msa0518960 | Msa1346350 | 0.803563 | 3.283841e-49 | -8.615850e-47 |
| Msa0594200 | Msa1346350 | 0.800551 | 1.366526e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346350 | MtrunA17_Chr3g0112831 | 97.630 | 211 | 5 | 0 | 1 | 211 | 1 | 211 | 2.85e-154 | 432 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346350 | AT4G15640.2 | 66.456 | 158 | 53 | 0 | 54 | 211 | 7 | 164 | 1.12e-76 | 234 |
| Msa1346350 | AT4G15640.1 | 66.456 | 158 | 53 | 0 | 54 | 211 | 68 | 225 | 2.33e-76 | 235 |
| Msa1346350 | AT3G21465.1 | 53.982 | 226 | 86 | 4 | 1 | 211 | 1 | 223 | 4.22e-76 | 234 |
| Msa1346350 | AT3G21465.2 | 52.814 | 231 | 86 | 5 | 1 | 211 | 1 | 228 | 9.97e-74 | 228 |
Find 45 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGCGGGAGCCCTTGATTT+TGG | 0.198324 | tig0008730:-939 | Msa1346350:intron |
| TGCATCTGCACACCATTTAC+TGG | 0.270167 | tig0008730:-756 | Msa1346350:intron |
| TTGTGGAAGCATAATGTCTA+TGG | 0.319284 | tig0008730:-794 | Msa1346350:CDS |
| TGTCTAACAATACCAGTAAA+TGG | 0.338321 | tig0008730:+744 | Msa1346350:intergenic |
| ATTGACCACAACCAAGCATT+TGG | 0.369301 | tig0008730:+1221 | Msa1346350:intergenic |
| AAGGTTCAGATTTCACTTGC+CGG | 0.400102 | tig0008730:+1463 | Msa1346350:intergenic |
| CAACAATGATACTAAACTAT+TGG | 0.402664 | tig0008730:-637 | Msa1346350:CDS |
| GGCTCGCACAACATTATTAC+CGG | 0.435085 | tig0008730:-1482 | Msa1346350:CDS |
| AATGTTGAAGGGACTCCAAC+AGG | 0.448749 | tig0008730:-1396 | Msa1346350:intron |
| ACTGAAGAACCGATTCTCTC+GGG | 0.459527 | tig0008730:-1504 | Msa1346350:CDS |
| AATAAAGCATACCAAAATCA+AGG | 0.473268 | tig0008730:+928 | Msa1346350:intergenic |
| TTCGACGCGAAGAAAATTGA+AGG | 0.488942 | tig0008730:+1444 | Msa1346350:intergenic |
| TCTGGAGTTGATAATGTTGA+AGG | 0.493165 | tig0008730:-1408 | Msa1346350:CDS |
| CACTGAAGAACCGATTCTCT+CGG | 0.501870 | tig0008730:-1505 | Msa1346350:CDS |
| CCTCTGTCGTGAAGTTACTA+AGG | 0.511005 | tig0008730:-970 | Msa1346350:CDS |
| AAAACTATATCTGCCGTGCC+TGG | 0.513854 | tig0008730:+570 | Msa1346350:intergenic |
| CAATGATACTAAACTATTGG+TGG | 0.518517 | tig0008730:-634 | Msa1346350:CDS |
| GACCACAACCAAGCATTTGG+AGG | 0.521507 | tig0008730:+1224 | Msa1346350:intergenic |
| TGTGCGAGCCCCGAGAGAAT+CGG | 0.524100 | tig0008730:+1495 | Msa1346350:intergenic |
| GAGCAGGAAAGAAGGCTTTG+TGG | 0.537927 | tig0008730:-811 | Msa1346350:intron |
| CAACCAAGCATTTGGAGGCA+TGG | 0.544992 | tig0008730:+1229 | Msa1346350:intergenic |
| AAATGTGTGAGCAGGAAAGA+AGG | 0.546383 | tig0008730:-819 | Msa1346350:intron |
| TGCCTCCAAATGCTTGGTTG+TGG | 0.548417 | tig0008730:-1226 | Msa1346350:CDS |
| GATCCATGCCTCCAAATGCT+TGG | 0.559232 | tig0008730:-1232 | Msa1346350:CDS |
| ATGGTGTGCAGATGCAACAC+TGG | 0.565392 | tig0008730:+763 | Msa1346350:intergenic |
| TACTAAGGCATGTGTTCATG+CGG | 0.574423 | tig0008730:-955 | Msa1346350:CDS |
| ATTGCAAGAGCCGAGAGACT+CGG | 0.576053 | tig0008730:+1559 | Msa1346350:intergenic |
| CAAATGTTCGCCGAGTCTCT+CGG | 0.588337 | tig0008730:-1569 | Msa1346350:CDS |
| TTTACCATTGCAACCAGGCA+CGG | 0.589615 | tig0008730:-583 | Msa1346350:CDS |
| CTGGAGTTGATAATGTTGAA+GGG | 0.596088 | tig0008730:-1407 | Msa1346350:CDS |
| ACTAAGGCATGTGTTCATGC+GGG | 0.600193 | tig0008730:-954 | Msa1346350:CDS |
| TGATACTAAACTATTGGTGG+AGG | 0.600901 | tig0008730:-631 | Msa1346350:CDS |
| ATAAAGCATACCAAAATCAA+GGG | 0.602288 | tig0008730:+929 | Msa1346350:intergenic |
| GAAGCATAATGTCTATGGAT+TGG | 0.602691 | tig0008730:-789 | Msa1346350:CDS |
| TTCACATTTAGACATGCAAG+TGG | 0.612949 | tig0008730:-1595 | None:intergenic |
| AGAAACTAACAAATCTGCGA+AGG | 0.616448 | tig0008730:+1141 | Msa1346350:intergenic |
| TGCTTCGAAGATGAGATGAA+AGG | 0.624710 | tig0008730:+1526 | Msa1346350:intergenic |
| TCTGCCGTGCCTGGTTGCAA+TGG | 0.629222 | tig0008730:+579 | Msa1346350:intergenic |
| CTGAAGAACCGATTCTCTCG+GGG | 0.631566 | tig0008730:-1503 | Msa1346350:CDS |
| AGATGAGATGAAAGGAAACT+CGG | 0.632675 | tig0008730:+1534 | Msa1346350:intergenic |
| ACAGAAGACTAATATCGTGA+TGG | 0.637044 | tig0008730:+1180 | Msa1346350:intergenic |
| AATGATTTACCATTGCAACC+AGG | 0.653462 | tig0008730:-588 | Msa1346350:CDS |
| TAGTAACTTCACGACAGAGG+TGG | 0.668692 | tig0008730:+973 | Msa1346340:intergenic |
| CCTTAGTAACTTCACGACAG+AGG | 0.686364 | tig0008730:+970 | Msa1346340:intergenic |
| TGGTGTGCAGATGCAACACT+GGG | 0.692755 | tig0008730:+764 | Msa1346340:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAAAATAATGATAAC+TGG | + | tig0008730:1068-1087 | Msa1346350:intergenic | 10.0% |
| !! | ATAAAAAAAATAATGATAAC+TGG | + | tig0008730:1068-1087 | Msa1346350:intergenic | 10.0% |
| !! | ACAAAAATGAAATTCGAAAA+GGG | + | tig0008730:809-828 | Msa1346350:intergenic | 20.0% |
| !! | AAAAAATAATGATAACTGGA+AGG | + | tig0008730:1064-1083 | Msa1346350:intergenic | 20.0% |
| !! | ACAAAAATGAAATTCGAAAA+GGG | + | tig0008730:809-828 | Msa1346350:intergenic | 20.0% |
| !! | AAAAAATAATGATAACTGGA+AGG | + | tig0008730:1064-1083 | Msa1346350:intergenic | 20.0% |
| ! | GACAAAAATGAAATTCGAAA+AGG | + | tig0008730:810-829 | Msa1346350:intergenic | 25.0% |
| ! | ATAACTGGAAGGAAAAAAAA+AGG | + | tig0008730:1053-1072 | Msa1346350:intergenic | 25.0% |
| ! | ATAAAGCATACCAAAATCAA+GGG | + | tig0008730:1225-1244 | Msa1346350:intergenic | 25.0% |
| ! | AATAAAGCATACCAAAATCA+AGG | + | tig0008730:1226-1245 | Msa1346350:intergenic | 25.0% |
| !! | CAGCTTTATAAAAGACAAAA+CGG | + | tig0008730:1256-1275 | Msa1346350:intergenic | 25.0% |
| ! | GAAGATATGAAATGAAATTG+AGG | - | tig0008730:1298-1317 | Msa1346350:intron | 25.0% |
| !!! | GAAATGAAATTGAGGTTTTT+TGG | - | tig0008730:1306-1325 | Msa1346350:intron | 25.0% |
| ! | CAACAATGATACTAAACTAT+TGG | - | tig0008730:1514-1533 | Msa1346350:CDS | 25.0% |
| ! | GACAAAAATGAAATTCGAAA+AGG | + | tig0008730:810-829 | Msa1346350:intergenic | 25.0% |
| ! | ATAACTGGAAGGAAAAAAAA+AGG | + | tig0008730:1053-1072 | Msa1346350:intergenic | 25.0% |
| ! | ATAAAGCATACCAAAATCAA+GGG | + | tig0008730:1225-1244 | Msa1346350:intergenic | 25.0% |
| ! | AATAAAGCATACCAAAATCA+AGG | + | tig0008730:1226-1245 | Msa1346350:intergenic | 25.0% |
| !! | CAGCTTTATAAAAGACAAAA+CGG | + | tig0008730:1256-1275 | Msa1346350:intergenic | 25.0% |
| ! | GAAGATATGAAATGAAATTG+AGG | - | tig0008730:1298-1317 | Msa1346350:intron | 25.0% |
| !!! | GAAATGAAATTGAGGTTTTT+TGG | - | tig0008730:1306-1325 | Msa1346350:intron | 25.0% |
| ! | CAACAATGATACTAAACTAT+TGG | - | tig0008730:1514-1533 | Msa1346350:CDS | 25.0% |
| AAGGAAAAAAAAAGGTGAGA+GGG | + | tig0008730:1045-1064 | Msa1346350:intergenic | 30.0% | |
| TTAATCTATTTGATGAGCAG+AGG | - | tig0008730:1120-1139 | Msa1346350:intron | 30.0% | |
| TGTCTAACAATACCAGTAAA+TGG | + | tig0008730:1410-1429 | Msa1346350:intergenic | 30.0% | |
| GAGACAGAATCAAAGAAATT+AGG | + | tig0008730:1442-1461 | Msa1346350:intergenic | 30.0% | |
| CAATGATACTAAACTATTGG+TGG | - | tig0008730:1517-1536 | Msa1346350:CDS | 30.0% | |
| AAGGAAAAAAAAAGGTGAGA+GGG | + | tig0008730:1045-1064 | Msa1346350:intergenic | 30.0% | |
| TTAATCTATTTGATGAGCAG+AGG | - | tig0008730:1120-1139 | Msa1346350:intron | 30.0% | |
| TGTCTAACAATACCAGTAAA+TGG | + | tig0008730:1410-1429 | Msa1346350:intergenic | 30.0% | |
| GAGACAGAATCAAAGAAATT+AGG | + | tig0008730:1442-1461 | Msa1346350:intergenic | 30.0% | |
| CAATGATACTAAACTATTGG+TGG | - | tig0008730:1517-1536 | Msa1346350:CDS | 30.0% | |
| AGATGAGATGAAAGGAAACT+CGG | + | tig0008730:620-639 | Msa1346350:intergenic | 35.0% | |
| !! | TCTGGAGTTGATAATGTTGA+AGG | - | tig0008730:743-762 | Msa1346350:intron | 35.0% |
| !! | CTGGAGTTGATAATGTTGAA+GGG | - | tig0008730:744-763 | Msa1346350:intron | 35.0% |
| CAATTGAATGAAGAACCTGT+TGG | + | tig0008730:773-792 | Msa1346350:intergenic | 35.0% | |
| ACAGAAGACTAATATCGTGA+TGG | + | tig0008730:974-993 | Msa1346350:intergenic | 35.0% | |
| AGAAACTAACAAATCTGCGA+AGG | + | tig0008730:1013-1032 | Msa1346350:intergenic | 35.0% | |
| AGGAAAAAAAAAGGTGAGAG+GGG | + | tig0008730:1044-1063 | Msa1346350:intergenic | 35.0% | |
| GAAGGAAAAAAAAAGGTGAG+AGG | + | tig0008730:1046-1065 | Msa1346350:intergenic | 35.0% | |
| ! | TTGTGGAAGCATAATGTCTA+TGG | - | tig0008730:1357-1376 | Msa1346350:intron | 35.0% |
| GAAGCATAATGTCTATGGAT+TGG | - | tig0008730:1362-1381 | Msa1346350:intron | 35.0% | |
| ATAGCTTACCAAATGCAAAC+AGG | + | tig0008730:1464-1483 | Msa1346350:intergenic | 35.0% | |
| TGATACTAAACTATTGGTGG+AGG | - | tig0008730:1520-1539 | Msa1346350:CDS | 35.0% | |
| AATGATTTACCATTGCAACC+AGG | - | tig0008730:1563-1582 | Msa1346350:CDS | 35.0% | |
| AGATGAGATGAAAGGAAACT+CGG | + | tig0008730:620-639 | Msa1346350:intergenic | 35.0% | |
| !! | TCTGGAGTTGATAATGTTGA+AGG | - | tig0008730:743-762 | Msa1346350:intron | 35.0% |
| !! | CTGGAGTTGATAATGTTGAA+GGG | - | tig0008730:744-763 | Msa1346350:intron | 35.0% |
| CAATTGAATGAAGAACCTGT+TGG | + | tig0008730:773-792 | Msa1346350:intergenic | 35.0% | |
| ACAGAAGACTAATATCGTGA+TGG | + | tig0008730:974-993 | Msa1346350:intergenic | 35.0% | |
| AGAAACTAACAAATCTGCGA+AGG | + | tig0008730:1013-1032 | Msa1346350:intergenic | 35.0% | |
| AGGAAAAAAAAAGGTGAGAG+GGG | + | tig0008730:1044-1063 | Msa1346350:intergenic | 35.0% | |
| GAAGGAAAAAAAAAGGTGAG+AGG | + | tig0008730:1046-1065 | Msa1346350:intergenic | 35.0% | |
| ! | TTGTGGAAGCATAATGTCTA+TGG | - | tig0008730:1357-1376 | Msa1346350:intron | 35.0% |
| GAAGCATAATGTCTATGGAT+TGG | - | tig0008730:1362-1381 | Msa1346350:intron | 35.0% | |
| ATAGCTTACCAAATGCAAAC+AGG | + | tig0008730:1464-1483 | Msa1346350:intergenic | 35.0% | |
| TGATACTAAACTATTGGTGG+AGG | - | tig0008730:1520-1539 | Msa1346350:CDS | 35.0% | |
| AATGATTTACCATTGCAACC+AGG | - | tig0008730:1563-1582 | Msa1346350:CDS | 35.0% | |
| TGCTTCGAAGATGAGATGAA+AGG | + | tig0008730:628-647 | Msa1346350:intergenic | 40.0% | |
| AAGGTTCAGATTTCACTTGC+CGG | + | tig0008730:691-710 | Msa1346350:intergenic | 40.0% | |
| TTCGACGCGAAGAAAATTGA+AGG | + | tig0008730:710-729 | Msa1346350:intergenic | 40.0% | |
| ! | TTCAATTTTCTTCGCGTCGA+AGG | - | tig0008730:709-728 | Msa1346350:intron | 40.0% |
| ! | TCGAAGGCTTTTTACAGTTC+TGG | - | tig0008730:725-744 | Msa1346350:intron | 40.0% |
| ATTGACCACAACCAAGCATT+TGG | + | tig0008730:933-952 | Msa1346350:intergenic | 40.0% | |
| TACTAAGGCATGTGTTCATG+CGG | - | tig0008730:1196-1215 | Msa1346350:CDS | 40.0% | |
| ! | TTTGGCTTAAATGTGTGAGC+AGG | - | tig0008730:1324-1343 | Msa1346350:intron | 40.0% |
| AAATGTGTGAGCAGGAAAGA+AGG | - | tig0008730:1332-1351 | Msa1346350:intron | 40.0% | |
| TTCTGTCTCCTGTTTGCATT+TGG | - | tig0008730:1453-1472 | Msa1346350:CDS | 40.0% | |
| TGCTTCGAAGATGAGATGAA+AGG | + | tig0008730:628-647 | Msa1346350:intergenic | 40.0% | |
| AAGGTTCAGATTTCACTTGC+CGG | + | tig0008730:691-710 | Msa1346350:intergenic | 40.0% | |
| TTCGACGCGAAGAAAATTGA+AGG | + | tig0008730:710-729 | Msa1346350:intergenic | 40.0% | |
| ! | TTCAATTTTCTTCGCGTCGA+AGG | - | tig0008730:709-728 | Msa1346350:intron | 40.0% |
| ! | TCGAAGGCTTTTTACAGTTC+TGG | - | tig0008730:725-744 | Msa1346350:intron | 40.0% |
| ATTGACCACAACCAAGCATT+TGG | + | tig0008730:933-952 | Msa1346350:intergenic | 40.0% | |
| TACTAAGGCATGTGTTCATG+CGG | - | tig0008730:1196-1215 | Msa1346350:CDS | 40.0% | |
| ! | TTTGGCTTAAATGTGTGAGC+AGG | - | tig0008730:1324-1343 | Msa1346350:intron | 40.0% |
| AAATGTGTGAGCAGGAAAGA+AGG | - | tig0008730:1332-1351 | Msa1346350:intron | 40.0% | |
| TTCTGTCTCCTGTTTGCATT+TGG | - | tig0008730:1453-1472 | Msa1346350:CDS | 40.0% | |
| ! | CACTGAAGAACCGATTCTCT+CGG | - | tig0008730:646-665 | Msa1346350:CDS | 45.0% |
| ! | ACTGAAGAACCGATTCTCTC+GGG | - | tig0008730:647-666 | Msa1346350:CDS | 45.0% |
| GGCTCGCACAACATTATTAC+CGG | - | tig0008730:669-688 | Msa1346350:intron | 45.0% | |
| AATGTTGAAGGGACTCCAAC+AGG | - | tig0008730:755-774 | Msa1346350:intron | 45.0% | |
| TAGTAACTTCACGACAGAGG+TGG | + | tig0008730:1181-1200 | Msa1346350:intergenic | 45.0% | |
| CCTTAGTAACTTCACGACAG+AGG | + | tig0008730:1184-1203 | Msa1346350:intergenic | 45.0% | |
| CCTCTGTCGTGAAGTTACTA+AGG | - | tig0008730:1181-1200 | Msa1346350:CDS | 45.0% | |
| ACTAAGGCATGTGTTCATGC+GGG | - | tig0008730:1197-1216 | Msa1346350:CDS | 45.0% | |
| TGCATCTGCACACCATTTAC+TGG | - | tig0008730:1395-1414 | Msa1346350:intron | 45.0% | |
| TTTACCATTGCAACCAGGCA+CGG | - | tig0008730:1568-1587 | Msa1346350:CDS | 45.0% | |
| AAAACTATATCTGCCGTGCC+TGG | + | tig0008730:1584-1603 | Msa1346350:intergenic | 45.0% | |
| ! | CACTGAAGAACCGATTCTCT+CGG | - | tig0008730:646-665 | Msa1346350:CDS | 45.0% |
| ! | ACTGAAGAACCGATTCTCTC+GGG | - | tig0008730:647-666 | Msa1346350:CDS | 45.0% |
| GGCTCGCACAACATTATTAC+CGG | - | tig0008730:669-688 | Msa1346350:intron | 45.0% | |
| AATGTTGAAGGGACTCCAAC+AGG | - | tig0008730:755-774 | Msa1346350:intron | 45.0% | |
| TAGTAACTTCACGACAGAGG+TGG | + | tig0008730:1181-1200 | Msa1346350:intergenic | 45.0% | |
| CCTTAGTAACTTCACGACAG+AGG | + | tig0008730:1184-1203 | Msa1346350:intergenic | 45.0% | |
| CCTCTGTCGTGAAGTTACTA+AGG | - | tig0008730:1181-1200 | Msa1346350:CDS | 45.0% | |
| ACTAAGGCATGTGTTCATGC+GGG | - | tig0008730:1197-1216 | Msa1346350:CDS | 45.0% | |
| TGCATCTGCACACCATTTAC+TGG | - | tig0008730:1395-1414 | Msa1346350:intron | 45.0% | |
| TTTACCATTGCAACCAGGCA+CGG | - | tig0008730:1568-1587 | Msa1346350:CDS | 45.0% | |
| AAAACTATATCTGCCGTGCC+TGG | + | tig0008730:1584-1603 | Msa1346350:intergenic | 45.0% | |
| CAAATGTTCGCCGAGTCTCT+CGG | - | tig0008730:582-601 | Msa1346350:CDS | 50.0% | |
| ATTGCAAGAGCCGAGAGACT+CGG | + | tig0008730:595-614 | Msa1346350:intergenic | 50.0% | |
| ! | CTGAAGAACCGATTCTCTCG+GGG | - | tig0008730:648-667 | Msa1346350:CDS | 50.0% |
| GATCCATGCCTCCAAATGCT+TGG | - | tig0008730:919-938 | Msa1346350:intron | 50.0% | |
| CAACCAAGCATTTGGAGGCA+TGG | + | tig0008730:925-944 | Msa1346350:intergenic | 50.0% | |
| TGCCTCCAAATGCTTGGTTG+TGG | - | tig0008730:925-944 | Msa1346350:intron | 50.0% | |
| GACCACAACCAAGCATTTGG+AGG | + | tig0008730:930-949 | Msa1346350:intergenic | 50.0% | |
| GAGCAGGAAAGAAGGCTTTG+TGG | - | tig0008730:1340-1359 | Msa1346350:intron | 50.0% | |
| TGGTGTGCAGATGCAACACT+GGG | + | tig0008730:1390-1409 | Msa1346350:intergenic | 50.0% | |
| ATGGTGTGCAGATGCAACAC+TGG | + | tig0008730:1391-1410 | Msa1346350:intergenic | 50.0% | |
| CAAATGTTCGCCGAGTCTCT+CGG | - | tig0008730:582-601 | Msa1346350:CDS | 50.0% | |
| ATTGCAAGAGCCGAGAGACT+CGG | + | tig0008730:595-614 | Msa1346350:intergenic | 50.0% | |
| ! | CTGAAGAACCGATTCTCTCG+GGG | - | tig0008730:648-667 | Msa1346350:CDS | 50.0% |
| GATCCATGCCTCCAAATGCT+TGG | - | tig0008730:919-938 | Msa1346350:intron | 50.0% | |
| CAACCAAGCATTTGGAGGCA+TGG | + | tig0008730:925-944 | Msa1346350:intergenic | 50.0% | |
| TGCCTCCAAATGCTTGGTTG+TGG | - | tig0008730:925-944 | Msa1346350:intron | 50.0% | |
| GACCACAACCAAGCATTTGG+AGG | + | tig0008730:930-949 | Msa1346350:intergenic | 50.0% | |
| GAGCAGGAAAGAAGGCTTTG+TGG | - | tig0008730:1340-1359 | Msa1346350:intron | 50.0% | |
| TGGTGTGCAGATGCAACACT+GGG | + | tig0008730:1390-1409 | Msa1346350:intergenic | 50.0% | |
| ATGGTGTGCAGATGCAACAC+TGG | + | tig0008730:1391-1410 | Msa1346350:intergenic | 50.0% | |
| ! | CATGCGGGAGCCCTTGATTT+TGG | - | tig0008730:1212-1231 | Msa1346350:CDS | 55.0% |
| ! | CATGCGGGAGCCCTTGATTT+TGG | - | tig0008730:1212-1231 | Msa1346350:CDS | 55.0% |
| TGTGCGAGCCCCGAGAGAAT+CGG | + | tig0008730:659-678 | Msa1346350:intergenic | 60.0% | |
| TCTGCCGTGCCTGGTTGCAA+TGG | + | tig0008730:1575-1594 | Msa1346350:intergenic | 60.0% | |
| TGTGCGAGCCCCGAGAGAAT+CGG | + | tig0008730:659-678 | Msa1346350:intergenic | 60.0% | |
| TCTGCCGTGCCTGGTTGCAA+TGG | + | tig0008730:1575-1594 | Msa1346350:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0008730 | gene | 569 | 1604 | 569 | ID=Msa1346350;Name=Msa1346350 |
| tig0008730 | mRNA | 569 | 1604 | 569 | ID=Msa1346350-mRNA-1;Parent=Msa1346350;Name=Msa1346350-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|5|0|211 |
| tig0008730 | exon | 1397 | 1604 | 1397 | ID=Msa1346350-mRNA-1:exon:5470;Parent=Msa1346350-mRNA-1 |
| tig0008730 | exon | 1151 | 1305 | 1151 | ID=Msa1346350-mRNA-1:exon:5469;Parent=Msa1346350-mRNA-1 |
| tig0008730 | exon | 940 | 1033 | 940 | ID=Msa1346350-mRNA-1:exon:5468;Parent=Msa1346350-mRNA-1 |
| tig0008730 | exon | 757 | 827 | 757 | ID=Msa1346350-mRNA-1:exon:5467;Parent=Msa1346350-mRNA-1 |
| tig0008730 | exon | 569 | 673 | 569 | ID=Msa1346350-mRNA-1:exon:5466;Parent=Msa1346350-mRNA-1 |
| tig0008730 | CDS | 1397 | 1604 | 1397 | ID=Msa1346350-mRNA-1:cds;Parent=Msa1346350-mRNA-1 |
| tig0008730 | CDS | 1151 | 1305 | 1151 | ID=Msa1346350-mRNA-1:cds;Parent=Msa1346350-mRNA-1 |
| tig0008730 | CDS | 940 | 1033 | 940 | ID=Msa1346350-mRNA-1:cds;Parent=Msa1346350-mRNA-1 |
| tig0008730 | CDS | 757 | 827 | 757 | ID=Msa1346350-mRNA-1:cds;Parent=Msa1346350-mRNA-1 |
| tig0008730 | CDS | 569 | 673 | 569 | ID=Msa1346350-mRNA-1:cds;Parent=Msa1346350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
