AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0594200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0594200 MtrunA17_Chr4g0013011 96.988 166 5 0 1 166 1 166 1.06e-114 337
Msa0594200 MtrunA17_Chr2g0284691 57.143 154 66 0 13 166 21 174 2.88e-56 185
Msa0594200 MtrunA17_Chr2g0277061 44.720 161 87 2 7 165 8 168 1.99e-37 135
Msa0594200 MtrunA17_Chr8g0385121 39.744 156 92 1 10 165 9 162 8.25e-32 119
Msa0594200 MtrunA17_Chr3g0122211 39.869 153 91 1 14 165 17 169 3.15e-31 118
Msa0594200 MtrunA17_Chr4g0046841 38.217 157 91 2 11 165 22 174 7.91e-29 111
Msa0594200 MtrunA17_Chr8g0377631 38.650 163 89 3 14 165 11 173 1.69e-27 107
Msa0594200 MtrunA17_Chr8g0391931 37.255 153 93 2 14 165 9 159 3.44e-26 103
Msa0594200 MtrunA17_Chr8g0385131 31.902 163 111 0 3 165 5 167 5.47e-25 100
Msa0594200 MtrunA17_Chr8g0385181 33.742 163 102 3 5 165 7 165 2.20e-21 90.1
Msa0594200 MtrunA17_Chr7g0274871 35.172 145 84 3 11 153 127 263 8.22e-18 78.6
Msa0594200 MtrunA17_Chr8g0385171 31.288 163 101 6 5 165 7 160 2.96e-16 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0594200 AT1G29690.1 50.955 157 77 0 10 166 20 176 1.89e-48 165
Msa0594200 AT4G24290.1 38.323 167 101 2 1 165 1 167 1.05e-32 119
Msa0594200 AT4G24290.2 38.323 167 101 2 1 165 1 167 1.95e-31 119
Msa0594200 AT4G24290.3 38.323 167 101 2 1 165 1 167 1.95e-31 119
Msa0594200 AT1G28380.1 38.750 160 97 1 7 165 11 170 2.95e-29 113
Msa0594200 AT1G14780.1 38.608 158 91 3 14 165 12 169 7.49e-27 106

Find 49 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTCTGCATTTAGCTTTAC+TGG 0.187450 4_2:-21347789 Msa0594200:CDS
AATCACAAGGCAAATATATC+AGG 0.221324 4_2:-21347834 Msa0594200:CDS
GTAAAGGTGGTTCAGGTTCT+AGG 0.258296 4_2:-21349611 Msa0594200:CDS
TTTGATTGTTGAGGTAAATT+TGG 0.266499 4_2:-21349779 Msa0594200:five_prime_UTR
AATGGATCTCAGAGAGATTA+AGG 0.277122 4_2:+21349985 None:intergenic
CCTGTGGGGCGTTTGAGTTC+TGG 0.310247 4_2:-21349492 Msa0594200:CDS
CTTTATTGTAAAGGTGGTTC+AGG 0.313423 4_2:-21349618 Msa0594200:CDS
AAAGGGCTATCCCAGTCAAT+TGG 0.381934 4_2:-21347653 Msa0594200:CDS
TTTAATTAAGAATCTGGGTT+GGG 0.417262 4_2:-21349749 Msa0594200:five_prime_UTR
CTAATATCCCTTGAAACATT+AGG 0.424789 4_2:+21349528 None:intergenic
TAACCATAGGAGACTCCGTT+TGG 0.435242 4_2:+21350130 None:intergenic
TTTGGTTTAATTAAGAATCT+GGG 0.442858 4_2:-21349754 Msa0594200:five_prime_UTR
ACTAGGTTGCTTTATTGTAA+AGG 0.459825 4_2:-21349627 Msa0594200:CDS
ACTAACGCTTTGCAAGCATT+AGG 0.469550 4_2:-21349675 Msa0594200:CDS
TATTGCAAGAAAATGTCAAA+AGG 0.473149 4_2:-21347671 Msa0594200:CDS
GATGGTGGATCCCAATTGAC+TGG 0.474592 4_2:+21347642 None:intergenic
AAGGGCTATCCCAGTCAATT+GGG 0.474810 4_2:-21347652 Msa0594200:CDS
CAATTGGGATCCACCATCCT+TGG 0.477002 4_2:-21347637 Msa0594200:CDS
TTTGTAGGATTTATTCATCT+GGG 0.484356 4_2:-21349817 Msa0594200:five_prime_UTR
GTAAAACCCATCTGAAGATA+AGG 0.491347 4_2:+21347734 None:intergenic
TTGATTGAAGGTGAAATCAA+TGG 0.498619 4_2:+21349967 None:intergenic
TAAAGGTGGTTCAGGTTCTA+GGG 0.498719 4_2:-21349610 Msa0594200:CDS
TTGTTGTGCCTAATGTTTCA+AGG 0.502182 4_2:-21349536 Msa0594200:CDS
GATGTAAAACACTTGATTGA+AGG 0.504714 4_2:+21349955 None:intergenic
TATAAATACCTTGCCAAGGA+TGG 0.508433 4_2:+21347624 None:intergenic
TAACCAAACGGAGTCTCCTA+TGG 0.514692 4_2:-21350133 Msa0594200:five_prime_UTR
ATTGCAAGAAAATGTCAAAA+GGG 0.523361 4_2:-21347670 Msa0594200:CDS
ATATCAGGGAGCTTTCCTCT+TGG 0.532229 4_2:-21347819 Msa0594200:CDS
GTTTAATTAAGAATCTGGGT+TGG 0.534387 4_2:-21349750 Msa0594200:five_prime_UTR
AGATTGATCAACAGTATCAA+AGG 0.542001 4_2:-21349581 Msa0594200:CDS
GATTGATCAACAGTATCAAA+GGG 0.546440 4_2:-21349580 Msa0594200:CDS
CGTACAGTGTAGAATAGTGT+TGG 0.548509 4_2:+21350101 None:intergenic
GCTTTGCAAGCATTAGGAAG+AGG 0.553056 4_2:-21349669 Msa0594200:CDS
AGAAGCTTTCGTGAACCTGT+GGG 0.553333 4_2:-21349507 Msa0594200:CDS
TAGAAGCTTTCGTGAACCTG+TGG 0.555349 4_2:-21349508 Msa0594200:CDS
AGGTTGCTTTATTGTAAAGG+TGG 0.561342 4_2:-21349624 Msa0594200:CDS
TTTGTAGCTGAACCTTTGCA+AGG 0.570870 4_2:+21347706 None:intergenic
AAATACCTTGCCAAGGATGG+TGG 0.575242 4_2:+21347627 None:intergenic
TTGTAGCTGAACCTTTGCAA+GGG 0.576981 4_2:+21347707 None:intergenic
CCAGAACTCAAACGCCCCAC+AGG 0.583836 4_2:+21349492 None:intergenic
TAAATATAAATACCTTGCCA+AGG 0.592523 4_2:+21347620 None:intergenic
GTGTTGGAAATTCTAACCAT+AGG 0.596797 4_2:+21350117 None:intergenic
ATCACAAGGCAAATATATCA+GGG 0.597269 4_2:-21347833 Msa0594200:CDS
TGTTGTGCCTAATGTTTCAA+GGG 0.611423 4_2:-21349535 Msa0594200:CDS
TGTAGCTGAACCTTTGCAAG+GGG 0.613457 4_2:+21347708 None:intergenic
GGGATCCACCATCCTTGGCA+AGG 0.619864 4_2:-21347632 Msa0594200:intron
ATGGTGGATCCCAATTGACT+GGG 0.649373 4_2:+21347643 None:intergenic
GCAGAGTTGAAGCTTCCAAG+AGG 0.671627 4_2:+21347804 None:intergenic
GAAGCTTTCGTGAACCTGTG+GGG 0.688033 4_2:-21349506 Msa0594200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTACATCAATACAAAAAT+GGG - chr4_2:21347765-21347784 Msa0594200:CDS 15.0%
!!! ATTCAATTTTTGTTTTTCTT+TGG - chr4_2:21348268-21348287 Msa0594200:intron 15.0%
!! TTAGTATTTGTCAATTATAT+AGG - chr4_2:21348701-21348720 Msa0594200:intron 15.0%
!!! AATCTGAAATTATTATACAT+TGG + chr4_2:21349178-21349197 None:intergenic 15.0%
!!! TCTAAAAATGTCATTTTTAT+TGG - chr4_2:21349717-21349736 Msa0594200:exon 15.0%
!!! GTTTTACATCAATACAAAAA+TGG - chr4_2:21347764-21347783 Msa0594200:CDS 20.0%
!!! TAATTTTTGTTTGATTGTTG+AGG - chr4_2:21347918-21347937 Msa0594200:intron 20.0%
!!! TTTTGGTTTAATTAAGAATC+TGG - chr4_2:21347951-21347970 Msa0594200:intron 20.0%
!!! TTTGGTTTAATTAAGAATCT+GGG - chr4_2:21347952-21347971 Msa0594200:intron 20.0%
!!! TTGATGTTAATTTTGATACT+AGG - chr4_2:21348062-21348081 Msa0594200:intron 20.0%
!! TTGTGTTAAGTTATTTGTAT+TGG - chr4_2:21348379-21348398 Msa0594200:intron 20.0%
!! TGTGTTAAGTTATTTGTATT+GGG - chr4_2:21348380-21348399 Msa0594200:intron 20.0%
!!! ATGTATAATATGGTTTTGTA+TGG - chr4_2:21348652-21348671 Msa0594200:intron 20.0%
!!! TGTATAATATGGTTTTGTAT+GGG - chr4_2:21348653-21348672 Msa0594200:intron 20.0%
!! ATTTGTCAATTATATAGGTA+TGG - chr4_2:21348706-21348725 Msa0594200:intron 20.0%
!! ATTAGAAAATGGATAAAGAT+AGG + chr4_2:21348963-21348982 None:intergenic 20.0%
!! TTAATGCACAAAAATTATCA+GGG + chr4_2:21349141-21349160 None:intergenic 20.0%
!!! GTCATATTTTTCCTTTTTTA+AGG - chr4_2:21349219-21349238 Msa0594200:intron 20.0%
!!! CTTCTTCATTACAAAATTTT+CGG + chr4_2:21349343-21349362 None:intergenic 20.0%
!! AACAAAAAAGGATATAACTA+TGG + chr4_2:21349790-21349809 None:intergenic 20.0%
!! GAGAAAATATGAAACAAAAA+AGG + chr4_2:21349802-21349821 None:intergenic 20.0%
!! ATTTTGTGGATTTATTCATC+TGG - chr4_2:21347806-21347825 Msa0594200:CDS 25.0%
!! TTTTGTGGATTTATTCATCT+GGG - chr4_2:21347807-21347826 Msa0594200:CDS 25.0%
!!! TGTCTTTTTGAAGTTTTTGT+AGG - chr4_2:21347874-21347893 Msa0594200:intron 25.0%
!! TTTTGTAGGATTTATTCATC+TGG - chr4_2:21347888-21347907 Msa0594200:intron 25.0%
! TTTGTAGGATTTATTCATCT+GGG - chr4_2:21347889-21347908 Msa0594200:intron 25.0%
! TTTGATTGTTGAGGTAAATT+TGG - chr4_2:21347927-21347946 Msa0594200:intron 25.0%
! TTTAATTAAGAATCTGGGTT+GGG - chr4_2:21347957-21347976 Msa0594200:intron 25.0%
! GTGTTAAGTTATTTGTATTG+GGG - chr4_2:21348381-21348400 Msa0594200:intron 25.0%
! ATCCTCAATAATATAACTCA+GGG + chr4_2:21348615-21348634 None:intergenic 25.0%
! TTTCTCGCTTATGTATAATA+TGG - chr4_2:21348642-21348661 Msa0594200:intron 25.0%
! CTTAATGCACAAAAATTATC+AGG + chr4_2:21349142-21349161 None:intergenic 25.0%
!!! TTTGTGCATTAAGTTTTTTG+AGG - chr4_2:21349149-21349168 Msa0594200:intron 25.0%
! AATTTGATGCTAACAAAACT+AGG + chr4_2:21349245-21349264 None:intergenic 25.0%
! AGTGTTTAATTCTTAACCAT+TGG - chr4_2:21349290-21349309 Msa0594200:intron 25.0%
!! TAATTCTTAACCATTGGTTA+TGG - chr4_2:21349296-21349315 Msa0594200:intron 25.0%
! GTTGAAAAGTTTATCCAATT+TGG - chr4_2:21349422-21349441 Msa0594200:intron 25.0%
! TATTAGTTGTCACATGATAA+TGG - chr4_2:21349487-21349506 Msa0594200:CDS 25.0%
! AAAACAATGGTTACAACATA+TGG + chr4_2:21349516-21349535 None:intergenic 25.0%
! TGGTAAGATACTAAAAACAA+TGG + chr4_2:21349529-21349548 None:intergenic 25.0%
!!! TCAGTTTTGTATCAAATGTA+TGG + chr4_2:21349549-21349568 None:intergenic 25.0%
!!! TCACAATTTTAATATCGACT+TGG - chr4_2:21349761-21349780 Msa0594200:five_prime_UTR 25.0%
!!! GGTAGATTATTTTAATCACA+AGG - chr4_2:21349859-21349878 Msa0594200:five_prime_UTR 25.0%
! TATTGCAAGAAAATGTCAAA+AGG - chr4_2:21350035-21350054 Msa0594200:five_prime_UTR 25.0%
! ATTGCAAGAAAATGTCAAAA+GGG - chr4_2:21350036-21350055 Msa0594200:five_prime_UTR 25.0%
! TAAATATAAATACCTTGCCA+AGG + chr4_2:21350089-21350108 None:intergenic 25.0%
!!! TTTAAGTTGTTTATCCAAAC+AGG + chr4_2:21350130-21350149 None:intergenic 25.0%
! CTTTTGACAAACTAACCAAA+CGG - chr4_2:21347561-21347580 Msa0594200:intron 30.0%
GAAGTTAGAAAAAAACAACG+AGG - chr4_2:21347638-21347657 Msa0594200:CDS 30.0%
TTGATTGAAGGTGAAATCAA+TGG + chr4_2:21347742-21347761 None:intergenic 30.0%
GATGTAAAACACTTGATTGA+AGG + chr4_2:21347754-21347773 None:intergenic 30.0%
!!! GTTGAGGTAAATTTGGTTTT+TGG - chr4_2:21347934-21347953 Msa0594200:intron 30.0%
GTTTAATTAAGAATCTGGGT+TGG - chr4_2:21347956-21347975 Msa0594200:intron 30.0%
!!! GAGAGTTTTTTGATGAGATA+TGG - chr4_2:21347979-21347998 Msa0594200:intron 30.0%
!!! AGTTTTTTGATGAGATATGG+AGG - chr4_2:21347982-21348001 Msa0594200:intron 30.0%
! ACTAGGTTGCTTTATTGTAA+AGG - chr4_2:21348079-21348098 Msa0594200:intron 30.0%
AGATTGATCAACAGTATCAA+AGG - chr4_2:21348125-21348144 Msa0594200:intron 30.0%
GATTGATCAACAGTATCAAA+GGG - chr4_2:21348126-21348145 Msa0594200:intron 30.0%
CTAATATCCCTTGAAACATT+AGG + chr4_2:21348181-21348200 None:intergenic 30.0%
! GTTTTGTGATAAAATGTTGC+AGG - chr4_2:21348290-21348309 Msa0594200:intron 30.0%
TAAGTTATTTGTATTGGGGT+TGG - chr4_2:21348385-21348404 Msa0594200:intron 30.0%
GAAGAAAAAGTTGCTAACAA+TGG - chr4_2:21348462-21348481 Msa0594200:intron 30.0%
! GGACATCTTAAACATTTTAG+AGG - chr4_2:21348519-21348538 Msa0594200:intron 30.0%
!! TTAGAGGCTCTGTTTAATTT+TGG - chr4_2:21348535-21348554 Msa0594200:intron 30.0%
!! TAGAGGCTCTGTTTAATTTT+GGG - chr4_2:21348536-21348555 Msa0594200:intron 30.0%
TCAATAATATAACTCAGGGT+AGG + chr4_2:21348611-21348630 None:intergenic 30.0%
TACCCTGAGTTATATTATTG+AGG - chr4_2:21348610-21348629 Msa0594200:intron 30.0%
CATCCTCAATAATATAACTC+AGG + chr4_2:21348616-21348635 None:intergenic 30.0%
CTGAGTTATATTATTGAGGA+TGG - chr4_2:21348614-21348633 Msa0594200:intron 30.0%
! AGATAGGATATGATAATGAC+AGG + chr4_2:21348947-21348966 None:intergenic 30.0%
GACAGAATAGGATTAGAAAA+TGG + chr4_2:21348974-21348993 None:intergenic 30.0%
TTTCGCTAGTAAACATGATT+TGG + chr4_2:21349054-21349073 None:intergenic 30.0%
ACAAAACTAGGCCTTAAAAA+AGG + chr4_2:21349233-21349252 None:intergenic 30.0%
TATAACTTCTCCATAACCAA+TGG + chr4_2:21349309-21349328 None:intergenic 30.0%
TTGGTTATGGAGAAGTTATA+TGG - chr4_2:21349309-21349328 Msa0594200:intron 30.0%
TTTCAACTCATAATCATTGC+AGG - chr4_2:21349367-21349386 Msa0594200:intron 30.0%
!! ATAGCTATGGTCTTTAGTTT+TGG + chr4_2:21349470-21349489 None:intergenic 30.0%
TGCACATTAGGAATTTGTAT+CGG + chr4_2:21349578-21349597 None:intergenic 30.0%
GTCAAAAATAGATGCACATT+AGG + chr4_2:21349590-21349609 None:intergenic 30.0%
! ACAAAAACTGGCTTAAAGAT+GGG + chr4_2:21349619-21349638 None:intergenic 30.0%
GATTCAAAGTTGACAAAAAC+TGG + chr4_2:21349631-21349650 None:intergenic 30.0%
AATCACAAGGCAAATATATC+AGG - chr4_2:21349872-21349891 Msa0594200:five_prime_UTR 30.0%
ATCACAAGGCAAATATATCA+GGG - chr4_2:21349873-21349892 Msa0594200:five_prime_UTR 30.0%
ACAAAAACCTTATCTTCAGA+TGG - chr4_2:21349965-21349984 Msa0594200:five_prime_UTR 30.0%
CAAAAACCTTATCTTCAGAT+GGG - chr4_2:21349966-21349985 Msa0594200:five_prime_UTR 30.0%
AGTTATCATTATGTCCTGTT+TGG - chr4_2:21350113-21350132 Msa0594200:five_prime_UTR 30.0%
GTGTTGGAAATTCTAACCAT+AGG + chr4_2:21347592-21347611 None:intergenic 35.0%
AATGGATCTCAGAGAGATTA+AGG + chr4_2:21347724-21347743 None:intergenic 35.0%
! CCACAAAATCATGACTTTTG+AGG + chr4_2:21347795-21347814 None:intergenic 35.0%
! CCTCAAAAGTCATGATTTTG+TGG - chr4_2:21347792-21347811 Msa0594200:CDS 35.0%
! AGGTTGCTTTATTGTAAAGG+TGG - chr4_2:21348082-21348101 Msa0594200:intron 35.0%
CTTTATTGTAAAGGTGGTTC+AGG - chr4_2:21348088-21348107 Msa0594200:intron 35.0%
TTGTTGTGCCTAATGTTTCA+AGG - chr4_2:21348170-21348189 Msa0594200:intron 35.0%
TGTTGTGCCTAATGTTTCAA+GGG - chr4_2:21348171-21348190 Msa0594200:intron 35.0%
!! GTTTTCAAGAGGTAAAGTTG+AGG - chr4_2:21348245-21348264 Msa0594200:intron 35.0%
!! ACAGGGCATCAAAATTTTGA+TGG + chr4_2:21348562-21348581 None:intergenic 35.0%
GGAAGTAGTGGTTTAAAAAG+TGG - chr4_2:21348674-21348693 Msa0594200:intron 35.0%
AGTAGTGGTTTAAAAAGTGG+TGG - chr4_2:21348677-21348696 Msa0594200:intron 35.0%
ATGGCCTAAACTAAAGTCAT+TGG - chr4_2:21348725-21348744 Msa0594200:intron 35.0%
GGATATGATAGAGACAGAAT+AGG + chr4_2:21348986-21349005 None:intergenic 35.0%
!! GACTCTAGTTCTATAGTACA+TGG + chr4_2:21349202-21349221 None:intergenic 35.0%
GTTATGGAGAAGTTATATGG+AGG - chr4_2:21349312-21349331 Msa0594200:intron 35.0%
CATGTGACAACTAATAGCTA+TGG + chr4_2:21349483-21349502 None:intergenic 35.0%
! GACAAAAACTGGCTTAAAGA+TGG + chr4_2:21349620-21349639 None:intergenic 35.0%
! ATTTGTTACTTGACTGCAGA+TGG - chr4_2:21349838-21349857 Msa0594200:five_prime_UTR 35.0%
!! AACTCTGCATTTAGCTTTAC+TGG - chr4_2:21349917-21349936 Msa0594200:five_prime_UTR 35.0%
! AGATAAGGTTTTTGTAGCTG+CGG + chr4_2:21349960-21349979 None:intergenic 35.0%
GTAAAACCCATCTGAAGATA+AGG + chr4_2:21349975-21349994 None:intergenic 35.0%
TATAAATACCTTGCCAAGGA+TGG + chr4_2:21350085-21350104 None:intergenic 35.0%
CGTACAGTGTAGAATAGTGT+TGG + chr4_2:21347608-21347627 None:intergenic 40.0%
ACTAACGCTTTGCAAGCATT+AGG - chr4_2:21348031-21348050 Msa0594200:intron 40.0%
! TAAAGGTGGTTCAGGTTCTA+GGG - chr4_2:21348096-21348115 Msa0594200:intron 40.0%
AGATGTCCTGATAGCACTTT+GGG + chr4_2:21348507-21348526 None:intergenic 40.0%
AAGATGTCCTGATAGCACTT+TGG + chr4_2:21348508-21348527 None:intergenic 40.0%
!!! TGGTTTTGTATGGGAAGTAG+TGG - chr4_2:21348662-21348681 Msa0594200:intron 40.0%
GCCTAAACTAAAGTCATTGG+AGG - chr4_2:21348728-21348747 Msa0594200:intron 40.0%
! GCCTCCAATGACTTTAGTTT+AGG + chr4_2:21348732-21348751 None:intergenic 40.0%
GACAGGCTATATCTAGCTAA+AGG + chr4_2:21348759-21348778 None:intergenic 40.0%
!! ATAGCCTGTCCTTTTTAGCA+TGG - chr4_2:21348769-21348788 Msa0594200:intron 40.0%
CCTTTGTGTCCATGCTAAAA+AGG + chr4_2:21348781-21348800 None:intergenic 40.0%
!! CCTTTTTAGCATGGACACAA+AGG - chr4_2:21348778-21348797 Msa0594200:intron 40.0%
! AAGGTCATGGTTTTCAACTG+CGG - chr4_2:21348797-21348816 Msa0594200:intron 40.0%
! AAACTGCCATTTATCCGCAT+CGG + chr4_2:21348862-21348881 None:intergenic 40.0%
GCTACGATTTCAAGCCAAAT+TGG + chr4_2:21349439-21349458 None:intergenic 40.0%
! GTTTTACATTCCCCTTGCAA+AGG - chr4_2:21349988-21350007 Msa0594200:five_prime_UTR 40.0%
TTGTAGCTGAACCTTTGCAA+GGG + chr4_2:21350002-21350021 None:intergenic 40.0%
TTTGTAGCTGAACCTTTGCA+AGG + chr4_2:21350003-21350022 None:intergenic 40.0%
TAACCAAACGGAGTCTCCTA+TGG - chr4_2:21347573-21347592 Msa0594200:intron 45.0%
TAACCATAGGAGACTCCGTT+TGG + chr4_2:21347579-21347598 None:intergenic 45.0%
GCTTTGCAAGCATTAGGAAG+AGG - chr4_2:21348037-21348056 Msa0594200:intron 45.0%
! GTAAAGGTGGTTCAGGTTCT+AGG - chr4_2:21348095-21348114 Msa0594200:intron 45.0%
TAGAAGCTTTCGTGAACCTG+TGG - chr4_2:21348198-21348217 Msa0594200:intron 45.0%
AGAAGCTTTCGTGAACCTGT+GGG - chr4_2:21348199-21348218 Msa0594200:intron 45.0%
!! TGGTGTCTGCAGTTTTCAAG+AGG - chr4_2:21348234-21348253 Msa0594200:intron 45.0%
!!! GGGGTTGGTCTCTTTTTGTT+TGG - chr4_2:21348400-21348419 Msa0594200:intron 45.0%
! CTGATAGCACTTTGGGTTTG+GGG + chr4_2:21348500-21348519 None:intergenic 45.0%
! CCTGATAGCACTTTGGGTTT+GGG + chr4_2:21348501-21348520 None:intergenic 45.0%
! TCCTGATAGCACTTTGGGTT+TGG + chr4_2:21348502-21348521 None:intergenic 45.0%
TCAAGGTGAGTCATTGCACA+GGG + chr4_2:21348579-21348598 None:intergenic 45.0%
TTCAAGGTGAGTCATTGCAC+AGG + chr4_2:21348580-21348599 None:intergenic 45.0%
AGGGTAGGCTAACAAGTTCA+AGG + chr4_2:21348596-21348615 None:intergenic 45.0%
GTGTCCATGCTAAAAAGGAC+AGG + chr4_2:21348776-21348795 None:intergenic 45.0%
TAGCATGGACACAAAGGTCA+TGG - chr4_2:21348784-21348803 Msa0594200:intron 45.0%
! AGGTCATGGTTTTCAACTGC+GGG - chr4_2:21348798-21348817 Msa0594200:intron 45.0%
TCTCTATATTGCAGCCGATG+CGG - chr4_2:21348845-21348864 Msa0594200:intron 45.0%
!! TGGCAGTTTTGATGCCTTTG+CGG - chr4_2:21348873-21348892 Msa0594200:intron 45.0%
CCAAACAGGCCCTTATATTG+CGG - chr4_2:21349012-21349031 Msa0594200:intron 45.0%
AGTCTGCAGCCGCAATATAA+GGG + chr4_2:21349024-21349043 None:intergenic 45.0%
ATATCAGGGAGCTTTCCTCT+TGG - chr4_2:21349887-21349906 Msa0594200:five_prime_UTR 45.0%
TGTAGCTGAACCTTTGCAAG+GGG + chr4_2:21350001-21350020 None:intergenic 45.0%
AAAGGGCTATCCCAGTCAAT+TGG - chr4_2:21350053-21350072 Msa0594200:five_prime_UTR 45.0%
AAGGGCTATCCCAGTCAATT+GGG - chr4_2:21350054-21350073 Msa0594200:five_prime_UTR 45.0%
!! ATGGTGGATCCCAATTGACT+GGG + chr4_2:21350066-21350085 None:intergenic 45.0%
AAATACCTTGCCAAGGATGG+TGG + chr4_2:21350082-21350101 None:intergenic 45.0%
GAAGCTTTCGTGAACCTGTG+GGG - chr4_2:21348200-21348219 Msa0594200:intron 50.0%
! CCCAAACCCAAAGTGCTATC+AGG - chr4_2:21348498-21348517 Msa0594200:intron 50.0%
!! CGGGAGAGATTTGCTGGTTA+TGG - chr4_2:21348817-21348836 Msa0594200:intron 50.0%
TTGCAGCCGATGCGGATAAA+TGG - chr4_2:21348853-21348872 Msa0594200:intron 50.0%
!! GGCAGTTTTGATGCCTTTGC+GGG - chr4_2:21348874-21348893 Msa0594200:intron 50.0%
!! GCAGTTTTGATGCCTTTGCG+GGG - chr4_2:21348875-21348894 Msa0594200:intron 50.0%
TCATATCCTGCGCACCAAAC+AGG - chr4_2:21348998-21349017 Msa0594200:intron 50.0%
CCGCAATATAAGGGCCTGTT+TGG + chr4_2:21349015-21349034 None:intergenic 50.0%
CAGTCTGCAGCCGCAATATA+AGG + chr4_2:21349025-21349044 None:intergenic 50.0%
!! GCTTTGATAGTGTGCAGTGC+AGG - chr4_2:21349109-21349128 Msa0594200:intron 50.0%
GCAGAGTTGAAGCTTCCAAG+AGG + chr4_2:21349905-21349924 None:intergenic 50.0%
!! GATGGTGGATCCCAATTGAC+TGG + chr4_2:21350067-21350086 None:intergenic 50.0%
CAATTGGGATCCACCATCCT+TGG - chr4_2:21350069-21350088 Msa0594200:five_prime_UTR 50.0%
CAACTGCGGGAGAGATTTGC+TGG - chr4_2:21348811-21348830 Msa0594200:intron 55.0%
! GCGTTTGCTGCACACGTGAT+AGG + chr4_2:21348904-21348923 None:intergenic 55.0%
GTGTGCAGCAAACGCATGAG+AGG - chr4_2:21348909-21348928 Msa0594200:intron 55.0%
CCAGAACTCAAACGCCCCAC+AGG + chr4_2:21348217-21348236 None:intergenic 60.0%
! CCTGTGGGGCGTTTGAGTTC+TGG - chr4_2:21348214-21348233 Msa0594200:intron 60.0%
CGTGATAGGTCTCCCCGCAA+AGG + chr4_2:21348890-21348909 None:intergenic 60.0%
!! TAAGGGCCTGTTTGGTGCGC+AGG + chr4_2:21349007-21349026 None:intergenic 60.0%
GGGATCCACCATCCTTGGCA+AGG - chr4_2:21350074-21350093 Msa0594200:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 21347495 21350233 21347495 ID=Msa0594200;Name=Msa0594200
chr4_2 mRNA 21347495 21350233 21347495 ID=Msa0594200-mRNA-1;Parent=Msa0594200;Name=Msa0594200-mRNA-1;_AED=0.28;_eAED=0.28;_QI=503|0.5|0.66|1|1|1|3|0|175
chr4_2 exon 21347495 21347525 21347495 ID=Msa0594200-mRNA-1:exon:5960;Parent=Msa0594200-mRNA-1
chr4_2 exon 21347633 21347871 21347633 ID=Msa0594200-mRNA-1:exon:5959;Parent=Msa0594200-mRNA-1
chr4_2 exon 21349473 21350233 21349473 ID=Msa0594200-mRNA-1:exon:5958;Parent=Msa0594200-mRNA-1
chr4_2 five_prime_UTR 21349731 21350233 21349731 ID=Msa0594200-mRNA-1:five_prime_utr;Parent=Msa0594200-mRNA-1
chr4_2 CDS 21349473 21349730 21349473 ID=Msa0594200-mRNA-1:cds;Parent=Msa0594200-mRNA-1
chr4_2 CDS 21347633 21347871 21347633 ID=Msa0594200-mRNA-1:cds;Parent=Msa0594200-mRNA-1
chr4_2 CDS 21347495 21347525 21347495 ID=Msa0594200-mRNA-1:cds;Parent=Msa0594200-mRNA-1
Gene Sequence

>Msa0594200

ATGGAGGAGCATGTAGCAGCTTTGCACACTGCTACTAACGCTTTGCAAGCATTAGGAAGAGGTTTTGATGTTAATTTTGATACTAGGTTGCTTTATTGTAAAGGTGGTTCAGGTTCTAGGGTAGTTGAGATTGATCAACAGTATCAAAGGGATTTGTTTTTGTATGATGATGTTGTTGTGCCTAATGTTTCAAGGGATATTAGAAGCTTTCGTGAACCTGTGGGGCGTTTGAGTTCTGGTGTCTGCAGTTTTCAAGAGATGGTAGATTATTTTAATCACAAGGCAAATATATCAGGGAGCTTTCCTCTTGGAAGCTTCAACTCTGCATTTAGCTTTACTGGTTCAAAACATGTTGATGCCGCAGCTACAAAAACCTTATCTTCAGATGGGTTTTACATTCCCCTTGCAAAGGTTCAGCTACAAAAATCAAACTTAATATTGCAAGAAAATGTCAAAAGGGCTATCCCAGTCAATTGGGATCCACCATCCTTGGCAAGCATTAACAAGAGTAAGCAAATATTAAAGTAA

Protein sequence

>Msa0594200

MEEHVAALHTATNALQALGRGFDVNFDTRLLYCKGGSGSRVVEIDQQYQRDLFLYDDVVVPNVSRDIRSFREPVGRLSSGVCSFQEMVDYFNHKANISGSFPLGSFNSAFSFTGSKHVDAAATKTLSSDGFYIPLAKVQLQKSNLILQENVKRAIPVNWDPPSLASINKSKQILK*