AlfalfaGEDB | Msa1385350

M. sativa cultivar zhongmu-4 / Msa1385350

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0030054 GO:0031625 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1385350	XP_012572866.1	81.481	189	25	1	3	181	606	794	1.97e-98	317

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1385350	sp\|Q9LSQ5\|FQR1_ARATH	87.097	124	16	0	171	294	3	126	9.12e-75	230

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1385350	A0A1S3ED37	81.481	189	25	1	3	181	606	794	9.40e-99	317

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0008840	Msa1385350	0.824896	6.294206e-54	-8.615850e-47
Msa0014830	Msa1385350	0.802208	6.256684e-49	-8.615850e-47
Msa0027390	Msa1385350	0.801083	1.064247e-48	-8.615850e-47
Msa0057750	Msa1385350	0.808705	2.715768e-50	-8.615850e-47
Msa0074750	Msa1385350	0.845695	3.460163e-59	-8.615850e-47
Msa0077540	Msa1385350	0.813358	2.664985e-51	-8.615850e-47
Msa0103070	Msa1385350	0.812593	3.921321e-51	-8.615850e-47
Msa0194720	Msa1385350	0.825862	3.718942e-54	-8.615850e-47
Msa0197610	Msa1385350	0.801619	8.266499e-49	-8.615850e-47
Msa0217180	Msa1385350	0.815685	8.146157e-52	-8.615850e-47

Showing 1 to 10 of 59 entries

Previous1 2 3 4 5 6Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1385350	MtrunA17_Chr2g0318961	96.721	122	4	0	173	294	5	126	8.36e-82	245
Msa1385350	MtrunA17_Chr4g0042401	66.848	184	51	1	3	176	591	774	4.54e-80	258
Msa1385350	MtrunA17_Chr8g0361441	66.848	184	51	1	3	176	594	777	2.13e-79	256
Msa1385350	MtrunA17_Chr4g0042351	64.674	184	55	1	3	176	541	724	1.94e-77	250
Msa1385350	MtrunA17_Chr4g0042381	64.130	184	56	1	3	176	541	724	4.21e-77	249
Msa1385350	MtrunA17_Chr4g0042391	58.605	215	71	3	3	204	541	750	5.58e-77	249
Msa1385350	MtrunA17_Chr3g0092301	59.259	189	67	1	1	179	16	204	9.04e-77	234
Msa1385350	MtrunA17_Chr4g0042441	63.587	184	57	1	3	176	588	771	5.72e-76	247
Msa1385350	MtrunA17_Chr8g0361451	89.344	122	13	0	173	294	5	126	3.19e-75	228
Msa1385350	MtrunA17_Chr4g0042361	61.957	184	60	1	3	176	627	810	4.96e-73	240

Showing 1 to 10 of 504 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1385350	AT5G54500.1	87.097	124	16	0	171	294	3	126	9.27e-76	230
Msa1385350	AT5G54500.2	87.097	124	16	0	171	294	3	126	1.41e-75	231
Msa1385350	AT4G27270.1	84.677	124	19	0	171	294	3	126	5.32e-74	226
Msa1385350	AT4G27270.3	87.826	115	14	0	180	294	1	115	4.75e-70	215
Msa1385350	AT4G27270.2	87.826	115	14	0	180	294	1	115	4.75e-70	215
Msa1385350	AT1G65790.1	55.789	190	70	2	1	176	604	793	8.77e-66	220
Msa1385350	AT1G65800.1	55.263	190	71	2	1	176	608	797	1.29e-65	220
Msa1385350	AT4G23180.1	51.872	187	80	1	3	179	435	621	2.20e-65	217
Msa1385350	AT4G23230.1	50.802	187	82	1	3	179	424	610	1.50e-63	211
Msa1385350	AT4G27300.1	55.851	188	72	2	3	179	587	774	2.24e-63	214

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 62 sgRNAs with CRISPR-Local

Find 659 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCATCGGTGGCATATTC+CGG	0.363768	tig0020728:-121540	None:intergenic
AAAGAAAGGTGCTGCTTCTG+TGG	0.513238	tig0020728:+131598	Msa1385350:CDS
AAAGGTGCTGCTTCTGTGGA+AGG	0.539491	tig0020728:+131602	Msa1385350:CDS
AAATCTGATGTCTTCAGCTT+TGG	0.397354	tig0020728:+121573	Msa1385350:CDS
AAATTGACTGATAAAAGCAT+TGG	0.542553	tig0020728:+121800	Msa1385350:CDS
AACCAAACCCATAATCTCAT+AGG	0.475819	tig0020728:+121651	Msa1385350:CDS
AAGGCGTTGAAGCCAAACTA+TGG	0.501664	tig0020728:+131621	Msa1385350:CDS
AAGTGTTTCGACATTATATG+TGG	0.505530	tig0020728:+121248	Msa1385350:CDS
AATACTTGCCTGCCATAGTT+TGG	0.355319	tig0020728:-131633	None:intergenic
AATCCTAAAATTTCGGATTC+CGG	0.300423	tig0020728:+121338	Msa1385350:CDS

Showing 1 to 10 of 62 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGTGTTTCGACATTATATG+TGG	+	tig0020728:121248-121267	Msa1385350:CDS	30.0%
CTGATCTAGTAAAACATTAC+TGG	-	tig0020728:121312-121331	None:intergenic	30.0%
AATCCTAAAATTTCGGATTC+CGG	+	tig0020728:121338-121357	Msa1385350:CDS	30.0%
TACACATGTTCTCCTTATTA+AGG	+	tig0020728:121466-121485	Msa1385350:intron	30.0%
TTCTCCTTATTAAGGTCTAA+AGG	+	tig0020728:121474-121493	Msa1385350:intron	30.0%
TCTCCTTATTAAGGTCTAAA+GGG	+	tig0020728:121475-121494	Msa1385350:intron	30.0%
AAACCCTTTAGACCTTAATA+AGG	-	tig0020728:121481-121500	None:intergenic	30.0%
AACTAAAAATAAACCATCGG+TGG	-	tig0020728:121553-121572	None:intergenic	30.0%
TACATAGCCTATGAGATTAT+GGG	-	tig0020728:121661-121680	None:intergenic	30.0%
TTACATAGCCTATGAGATTA+TGG	-	tig0020728:121662-121681	None:intergenic	30.0%

Showing 1 to 10 of 659 entries

Previous1 2 3 4 5…66Next

Chromosome	Type	Strat	End	Strand	Name
tig0020728	gene	121209	132641	121209	ID=Msa1385350;Name=Msa1385350
tig0020728	mRNA	121209	132641	121209	ID=Msa1385350-mRNA-1;Parent=Msa1385350;Name=Msa1385350-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|0\|0\|1\|1\|1\|5\|0\|294
tig0020728	exon	121209	121423	121209	ID=Msa1385350-mRNA-1:exon:9509;Parent=Msa1385350-mRNA-1
tig0020728	exon	121527	121677	121527	ID=Msa1385350-mRNA-1:exon:9510;Parent=Msa1385350-mRNA-1
tig0020728	exon	121767	121927	121767	ID=Msa1385350-mRNA-1:exon:9511;Parent=Msa1385350-mRNA-1
tig0020728	exon	131553	131646	131553	ID=Msa1385350-mRNA-1:exon:9512;Parent=Msa1385350-mRNA-1
tig0020728	exon	132381	132641	132381	ID=Msa1385350-mRNA-1:exon:9513;Parent=Msa1385350-mRNA-1
tig0020728	CDS	121209	121423	121209	ID=Msa1385350-mRNA-1:cds;Parent=Msa1385350-mRNA-1
tig0020728	CDS	121527	121677	121527	ID=Msa1385350-mRNA-1:cds;Parent=Msa1385350-mRNA-1
tig0020728	CDS	121767	121927	121767	ID=Msa1385350-mRNA-1:cds;Parent=Msa1385350-mRNA-1
tig0020728	CDS	131553	131646	131553	ID=Msa1385350-mRNA-1:cds;Parent=Msa1385350-mRNA-1
tig0020728	CDS	132381	132641	132381	ID=Msa1385350-mRNA-1:cds;Parent=Msa1385350-mRNA-1

Gene Sequence

>Msa1385350

ATGACAGATAAGCAGAAAAGTGAATTACTAGATTGGTCGAAGTGTTTCGACATTATATGTGGAATTGCTAGACTAAGGATTATTCACCGAGATTTAAAAGCCAGTAATGTTTTACTAGATCAGGAATTAAATCCTAAAATTTCGGATTCCGGCATGGCTAAAATTTTCGGAGGAGATCAAAACGAAGGAAACACAAGGAGAATAGTTGCGACATATGGTTACATGGCACCGGAATATGCCACCGATGGTTTATTTTTAGTTAAATCTGATGTCTTCAGCTTTGGTGTTTTGTTGATGGAGATTATATCAGGGAAGAGAAGCAGAGGATACTATAGTAAAAACCAAACCCATAATCTCATAGGCTATGCTTGGAAATTATGGAAAGAAGGAAGACCAATAAAATTGACTGATAAAAGCATTGGAGACTCTTGTTTAATATCACAAATAATGCATTGCATTCATGTTAGTCTCTTGTGTGTACAACAAAATCCAGAGGATAGGCCTGTAATGTCATCTGTGATCCTAATGTACTACTCCATGTACGGACATGTGGAGAAACTAGCAGAAGAAATAAAGAAAGGTGCTGCTTCTGTGGAAGGCGTTGAAGCCAAACTATGGCAGGTACCTGAGACTCTGCAAGAGGAGGTGCTTGGTAAGATGAGTGCACCACCCAAGAGTGATGTACCACTCATCACACCAAATGAACTGTCTGAGGGTGATGGTTTTGTCTTTGGCTTCCCAACAAGATTTGGAATGATGGCTGCTCAATTCAAAGCTTTTCTAGATGCTACTGGTGGTTTGTGGAAAGCACAATCGCTTGCAGGCAAGCCTGCCGGAATCTTCTACAGCACCGGTTCTCAAGGCGGCGGACAAGAGACTACA

Protein sequence

>Msa1385350

MTDKQKSELLDWSKCFDIICGIARLRIIHRDLKASNVLLDQELNPKISDSGMAKIFGGDQNEGNTRRIVATYGYMAPEYATDGLFLVKSDVFSFGVLLMEIISGKRSRGYYSKNQTHNLIGYAWKLWKEGRPIKLTDKSIGDSCLISQIMHCIHVSLLCVQQNPEDRPVMSSVILMYYSMYGHVEKLAEEIKKGAASVEGVEAKLWQVPETLQEEVLGKMSAPPKSDVPLITPNELSEGDGFVFGFPTRFGMMAAQFKAFLDATGGLWKAQSLAGKPAGIFYSTGSQGGGQETT