AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1461710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1461710 MtrunA17_Chr3g0139321 98.077 156 3 0 1 156 1 156 2.67e-100 295
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1461710 AT4G31340.2 55.814 129 56 1 31 159 35 162 2.00e-33 122
Msa1461710 AT4G31340.1 55.814 129 56 1 31 159 35 162 2.29e-33 122
Msa1461710 AT2G24420.1 46.309 149 74 2 17 159 17 165 1.03e-29 112
Msa1461710 AT2G24420.2 46.309 149 74 2 17 159 17 165 1.03e-29 112

Find 42 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAATTGAGTTGATCTAAT+TGG 0.198323 tig0041667:-13816 None:intergenic
AAGTAACGAAGGAGAAAATT+AGG 0.226102 tig0041667:-13744 None:intergenic
AACACAAGAATTGAAGAAAA+AGG 0.318070 tig0041667:+14148 Msa1461710:CDS
TTGGATTGATACCGAGGAAT+TGG 0.318579 tig0041667:-13843 None:intergenic
GAATGAGGTTGCTTCTCTTC+AGG 0.323946 tig0041667:+14235 Msa1461710:CDS
GAATGCTACTCAACTTATCT+TGG 0.345760 tig0041667:-14202 None:intergenic
AGCTTTGTTGGCGGTGTTGA+TGG 0.364823 tig0041667:+13684 Msa1461710:exon
ACACGCACACAAACAAGAAT+AGG 0.371891 tig0041667:-14754 None:intergenic
AATCTTGATACCAAACCCTT+TGG 0.421657 tig0041667:+13580 Msa1461710:five_prime_UTR
GATACCGAGGAATTGGATCT+TGG 0.433047 tig0041667:-13836 None:intergenic
CATATAAAGGTGGTGGATGT+TGG 0.438582 tig0041667:-13399 None:intergenic
GTCATTGGATGCCGAGGAGC+AGG 0.448017 tig0041667:+14430 Msa1461710:CDS
AGAAAGTGAACTGGGAATCT+CGG 0.463402 tig0041667:+14612 Msa1461710:CDS
AGTAACGAAGGAGAAAATTA+GGG 0.474409 tig0041667:-13743 None:intergenic
AAAACAGTGAGAAAGTGAAC+TGG 0.480727 tig0041667:+14603 Msa1461710:CDS
TCCGAACGAAGCTTTGTTGG+CGG 0.488781 tig0041667:+13675 Msa1461710:five_prime_UTR
TTCGATGGAAACATCGGCCT+CGG 0.496792 tig0041667:-13767 None:intergenic
GAAAGTGAACTGGGAATCTC+GGG 0.506911 tig0041667:+14613 Msa1461710:CDS
CATTCAATCCTTGCAGAATG+AGG 0.508270 tig0041667:+14220 Msa1461710:CDS
ACCGCCAACAAAGCTTCGTT+CGG 0.522762 tig0041667:-13676 None:intergenic
AAAGGAACATATAAAGGTGG+TGG 0.525507 tig0041667:-13406 None:intergenic
TGCCGGTGAACTACAGAAGC+AGG 0.548974 tig0041667:+14472 Msa1461710:CDS
GGAAAGGCTCATGCACGTGC+CGG 0.552710 tig0041667:+14455 Msa1461710:CDS
TTTCTCCTTCGTTACTTCCG+AGG 0.559530 tig0041667:+13750 Msa1461710:CDS
TGCCGAGGAGCAGGTTGGAA+AGG 0.563199 tig0041667:+14439 Msa1461710:CDS
AGAATCTTCGATGGAAACAT+CGG 0.571464 tig0041667:-13773 None:intergenic
ATAGCGAAGACGAAAAGCTT+CGG 0.580873 tig0041667:-13712 None:intergenic
GAGGATGTAAGTTGTACACT+TGG 0.581061 tig0041667:+14680 Msa1461710:CDS
GACCTGCTTCTGTAGTTCAC+CGG 0.583896 tig0041667:-14474 None:intergenic
AATTCCAAGATCCAATTCCT+CGG 0.589768 tig0041667:+13832 Msa1461710:CDS
AGCCTTTCCAACCTGCTCCT+CGG 0.598082 tig0041667:-14441 None:intergenic
GAAGGAGAAAATTAGGGCAA+CGG 0.609746 tig0041667:-13737 None:intergenic
TTGGATGCCGAGGAGCAGGT+TGG 0.613773 tig0041667:+14434 Msa1461710:CDS
AGAGGAATCAGAATCTTCGA+TGG 0.619773 tig0041667:-13782 None:intergenic
AAAAGGGTCATTGGATGCCG+AGG 0.621224 tig0041667:+14424 Msa1461710:CDS
TGATTTGAACTCAAAACTAG+AGG 0.624974 tig0041667:+14661 Msa1461710:CDS
AAACAGTGAGAAAGTGAACT+GGG 0.625922 tig0041667:+14604 Msa1461710:CDS
ATCGGCCTCGGAAGTAACGA+AGG 0.639450 tig0041667:-13755 None:intergenic
TAATTGGATCTTAAGAGCAG+AGG 0.640351 tig0041667:-13800 None:intergenic
AGAAGCAACCTCATTCTGCA+AGG 0.645724 tig0041667:-14228 None:intergenic
TAAAGTGAGATCTAAACATG+TGG 0.647367 tig0041667:-13268 None:intergenic
GCGAAGACGAAAAGCTTCGG+AGG 0.668584 tig0041667:-13709 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTCTATATTTTTTTTTTTG+AGG + tig0041667:13303-13322 Msa1461710:five_prime_UTR 10.0%
!!! TTCTATATTTTTTTTTTTGA+GGG + tig0041667:13304-13323 Msa1461710:five_prime_UTR 10.0%
!!! TTTTTAAGTTTTAGATTTTT+TGG - tig0041667:13500-13519 None:intergenic 10.0%
!!! GAAAAAATAATAATTTTGAA+GGG - tig0041667:14397-14416 None:intergenic 10.0%
!!! ATTCTATATTTTTTTTTTTG+AGG + tig0041667:13303-13322 Msa1461710:five_prime_UTR 10.0%
!!! TTCTATATTTTTTTTTTTGA+GGG + tig0041667:13304-13323 Msa1461710:five_prime_UTR 10.0%
!!! TTTTTAAGTTTTAGATTTTT+TGG - tig0041667:13500-13519 None:intergenic 10.0%
!!! GAAAAAATAATAATTTTGAA+GGG - tig0041667:14397-14416 None:intergenic 10.0%
!!! TCTATATTTTTTTTTTTGAG+GGG + tig0041667:13305-13324 Msa1461710:five_prime_UTR 15.0%
!! ATTAAAAAAGGAACATATAA+AGG - tig0041667:13415-13434 None:intergenic 15.0%
!!! GGAAAAAATAATAATTTTGA+AGG - tig0041667:14398-14417 None:intergenic 15.0%
!!! TCTATATTTTTTTTTTTGAG+GGG + tig0041667:13305-13324 Msa1461710:five_prime_UTR 15.0%
!! ATTAAAAAAGGAACATATAA+AGG - tig0041667:13415-13434 None:intergenic 15.0%
!!! GGAAAAAATAATAATTTTGA+AGG - tig0041667:14398-14417 None:intergenic 15.0%
!! TTCAAATCATCTAAAAAGAA+AGG + tig0041667:13540-13559 Msa1461710:five_prime_UTR 20.0%
!!! AATTATGATAACTGAGATTT+TGG - tig0041667:13865-13884 None:intergenic 20.0%
!! AAAAAAAAACTTGGTTCAAT+CGG - tig0041667:13944-13963 None:intergenic 20.0%
!! AAATGCTTCAAAAATAATAC+AGG - tig0041667:14319-14338 None:intergenic 20.0%
!!! GTATTATTTTTGAAGCATTT+TGG + tig0041667:14319-14338 Msa1461710:intron 20.0%
!!! TTATTTTTTCCTCAGAAAAA+AGG + tig0041667:14407-14426 Msa1461710:intron 20.0%
!!! TATTTTTTCCTCAGAAAAAA+GGG + tig0041667:14408-14427 Msa1461710:intron 20.0%
!! TTCAAATCATCTAAAAAGAA+AGG + tig0041667:13540-13559 Msa1461710:five_prime_UTR 20.0%
!!! AATTATGATAACTGAGATTT+TGG - tig0041667:13865-13884 None:intergenic 20.0%
!! AAAAAAAAACTTGGTTCAAT+CGG - tig0041667:13944-13963 None:intergenic 20.0%
!! AAATGCTTCAAAAATAATAC+AGG - tig0041667:14319-14338 None:intergenic 20.0%
!!! GTATTATTTTTGAAGCATTT+TGG + tig0041667:14319-14338 Msa1461710:intron 20.0%
!!! TTATTTTTTCCTCAGAAAAA+AGG + tig0041667:14407-14426 Msa1461710:intron 20.0%
!!! TATTTTTTCCTCAGAAAAAA+GGG + tig0041667:14408-14427 Msa1461710:intron 20.0%
! AAAAAAGGAACATATAAAGG+TGG - tig0041667:13412-13431 None:intergenic 25.0%
! TCAATTAGTTGAAATTACTG+AGG + tig0041667:14017-14036 Msa1461710:intron 25.0%
!! AATTACTGAGGAAATTTTTG+TGG + tig0041667:14029-14048 Msa1461710:intron 25.0%
! GGCTAGTAATTTACAAATTT+AGG + tig0041667:14050-14069 Msa1461710:intron 25.0%
! AACACAAGAATTGAAGAAAA+AGG + tig0041667:14148-14167 Msa1461710:CDS 25.0%
!!! TTAGGGATTTTTCAATCATT+AGG + tig0041667:14284-14303 Msa1461710:intron 25.0%
! TTTAAGCAAATAACAACAAG+TGG - tig0041667:14374-14393 None:intergenic 25.0%
!! ATGAATCTTTTTCTCTAACT+TGG - tig0041667:14642-14661 None:intergenic 25.0%
!! TGAAGTAAATCTGAGTTTTA+TGG + tig0041667:14725-14744 Msa1461710:three_prime_UTR 25.0%
! AAAAAAGGAACATATAAAGG+TGG - tig0041667:13412-13431 None:intergenic 25.0%
! TCAATTAGTTGAAATTACTG+AGG + tig0041667:14017-14036 Msa1461710:intron 25.0%
!! AATTACTGAGGAAATTTTTG+TGG + tig0041667:14029-14048 Msa1461710:intron 25.0%
! GGCTAGTAATTTACAAATTT+AGG + tig0041667:14050-14069 Msa1461710:intron 25.0%
! AACACAAGAATTGAAGAAAA+AGG + tig0041667:14148-14167 Msa1461710:CDS 25.0%
!!! TTAGGGATTTTTCAATCATT+AGG + tig0041667:14284-14303 Msa1461710:intron 25.0%
! TTTAAGCAAATAACAACAAG+TGG - tig0041667:14374-14393 None:intergenic 25.0%
!! ATGAATCTTTTTCTCTAACT+TGG - tig0041667:14642-14661 None:intergenic 25.0%
!! TGAAGTAAATCTGAGTTTTA+TGG + tig0041667:14725-14744 Msa1461710:three_prime_UTR 25.0%
TAAAGTGAGATCTAAACATG+TGG - tig0041667:13271-13290 None:intergenic 30.0%
!!! TTTTGTAAAAAAGAGTGTCG+TGG - tig0041667:13370-13389 None:intergenic 30.0%
AGTAACGAAGGAGAAAATTA+GGG - tig0041667:13746-13765 None:intergenic 30.0%
AAGTAACGAAGGAGAAAATT+AGG - tig0041667:13747-13766 None:intergenic 30.0%
!! TGGAATTGAGTTGATCTAAT+TGG - tig0041667:13819-13838 None:intergenic 30.0%
! TTTGTGAATCGTGATTTTTG+TGG + tig0041667:14083-14102 Msa1461710:intron 30.0%
AAAAAGGATCAAGTAATTGC+AGG + tig0041667:14164-14183 Msa1461710:CDS 30.0%
GATTGAAAAATCCCTAAAGA+GGG - tig0041667:14281-14300 None:intergenic 30.0%
TGATTGAAAAATCCCTAAAG+AGG - tig0041667:14282-14301 None:intergenic 30.0%
! TAGTCTGAAATTCTTAATGC+AGG + tig0041667:14550-14569 Msa1461710:intron 30.0%
TGATTTGAACTCAAAACTAG+AGG + tig0041667:14661-14680 Msa1461710:CDS 30.0%
TAAAGTGAGATCTAAACATG+TGG - tig0041667:13271-13290 None:intergenic 30.0%
!!! TTTTGTAAAAAAGAGTGTCG+TGG - tig0041667:13370-13389 None:intergenic 30.0%
AGTAACGAAGGAGAAAATTA+GGG - tig0041667:13746-13765 None:intergenic 30.0%
AAGTAACGAAGGAGAAAATT+AGG - tig0041667:13747-13766 None:intergenic 30.0%
!! TGGAATTGAGTTGATCTAAT+TGG - tig0041667:13819-13838 None:intergenic 30.0%
! TTTGTGAATCGTGATTTTTG+TGG + tig0041667:14083-14102 Msa1461710:intron 30.0%
AAAAAGGATCAAGTAATTGC+AGG + tig0041667:14164-14183 Msa1461710:CDS 30.0%
GATTGAAAAATCCCTAAAGA+GGG - tig0041667:14281-14300 None:intergenic 30.0%
TGATTGAAAAATCCCTAAAG+AGG - tig0041667:14282-14301 None:intergenic 30.0%
! TAGTCTGAAATTCTTAATGC+AGG + tig0041667:14550-14569 Msa1461710:intron 30.0%
TGATTTGAACTCAAAACTAG+AGG + tig0041667:14661-14680 Msa1461710:CDS 30.0%
AAAGGAACATATAAAGGTGG+TGG - tig0041667:13409-13428 None:intergenic 35.0%
AATCTTGATACCAAACCCTT+TGG + tig0041667:13580-13599 Msa1461710:five_prime_UTR 35.0%
AGAATCTTCGATGGAAACAT+CGG - tig0041667:13776-13795 None:intergenic 35.0%
TAATTGGATCTTAAGAGCAG+AGG - tig0041667:13803-13822 None:intergenic 35.0%
AATTCCAAGATCCAATTCCT+CGG + tig0041667:13832-13851 Msa1461710:CDS 35.0%
TTCCTAAATCGATGTTACTG+TGG + tig0041667:13983-14002 Msa1461710:intron 35.0%
GAATGCTACTCAACTTATCT+TGG - tig0041667:14205-14224 None:intergenic 35.0%
! TTTTCACTAGACCCTCTTTA+GGG + tig0041667:14267-14286 Msa1461710:intron 35.0%
AAAACAGTGAGAAAGTGAAC+TGG + tig0041667:14603-14622 Msa1461710:CDS 35.0%
AAACAGTGAGAAAGTGAACT+GGG + tig0041667:14604-14623 Msa1461710:CDS 35.0%
AAAGGAACATATAAAGGTGG+TGG - tig0041667:13409-13428 None:intergenic 35.0%
AATCTTGATACCAAACCCTT+TGG + tig0041667:13580-13599 Msa1461710:five_prime_UTR 35.0%
AGAATCTTCGATGGAAACAT+CGG - tig0041667:13776-13795 None:intergenic 35.0%
TAATTGGATCTTAAGAGCAG+AGG - tig0041667:13803-13822 None:intergenic 35.0%
AATTCCAAGATCCAATTCCT+CGG + tig0041667:13832-13851 Msa1461710:CDS 35.0%
TTCCTAAATCGATGTTACTG+TGG + tig0041667:13983-14002 Msa1461710:intron 35.0%
GAATGCTACTCAACTTATCT+TGG - tig0041667:14205-14224 None:intergenic 35.0%
! TTTTCACTAGACCCTCTTTA+GGG + tig0041667:14267-14286 Msa1461710:intron 35.0%
AAAACAGTGAGAAAGTGAAC+TGG + tig0041667:14603-14622 Msa1461710:CDS 35.0%
AAACAGTGAGAAAGTGAACT+GGG + tig0041667:14604-14623 Msa1461710:CDS 35.0%
!! CATATAAAGGTGGTGGATGT+TGG - tig0041667:13402-13421 None:intergenic 40.0%
TGCTCAAAAACCAAAGGGTT+TGG - tig0041667:13593-13612 None:intergenic 40.0%
TGCACTGCTCAAAAACCAAA+GGG - tig0041667:13598-13617 None:intergenic 40.0%
TTGCACTGCTCAAAAACCAA+AGG - tig0041667:13599-13618 None:intergenic 40.0%
!! TTGGTTTTTGAGCAGTGCAA+TGG + tig0041667:13599-13618 Msa1461710:five_prime_UTR 40.0%
!! TTTTCCGAACGAAGCTTTGT+TGG + tig0041667:13672-13691 Msa1461710:five_prime_UTR 40.0%
ATAGCGAAGACGAAAAGCTT+CGG - tig0041667:13715-13734 None:intergenic 40.0%
GAAGGAGAAAATTAGGGCAA+CGG - tig0041667:13740-13759 None:intergenic 40.0%
AGAGGAATCAGAATCTTCGA+TGG - tig0041667:13785-13804 None:intergenic 40.0%
TTGGATTGATACCGAGGAAT+TGG - tig0041667:13846-13865 None:intergenic 40.0%
! GAGATTTTGGATTGATACCG+AGG - tig0041667:13852-13871 None:intergenic 40.0%
!! CACCACAGTAACATCGATTT+AGG - tig0041667:13988-14007 None:intergenic 40.0%
CATTCAATCCTTGCAGAATG+AGG + tig0041667:14220-14239 Msa1461710:CDS 40.0%
! CTTTTCACTAGACCCTCTTT+AGG + tig0041667:14266-14285 Msa1461710:intron 40.0%
TCCTCAGAAAAAAGGGTCAT+TGG + tig0041667:14415-14434 Msa1461710:intron 40.0%
!!! TCCAATGACCCTTTTTTCTG+AGG - tig0041667:14419-14438 None:intergenic 40.0%
AGAAAGTGAACTGGGAATCT+CGG + tig0041667:14612-14631 Msa1461710:CDS 40.0%
GAGGATGTAAGTTGTACACT+TGG + tig0041667:14680-14699 Msa1461710:CDS 40.0%
ACACGCACACAAACAAGAAT+AGG - tig0041667:14757-14776 None:intergenic 40.0%
!! CATATAAAGGTGGTGGATGT+TGG - tig0041667:13402-13421 None:intergenic 40.0%
TGCTCAAAAACCAAAGGGTT+TGG - tig0041667:13593-13612 None:intergenic 40.0%
TGCACTGCTCAAAAACCAAA+GGG - tig0041667:13598-13617 None:intergenic 40.0%
TTGCACTGCTCAAAAACCAA+AGG - tig0041667:13599-13618 None:intergenic 40.0%
!! TTGGTTTTTGAGCAGTGCAA+TGG + tig0041667:13599-13618 Msa1461710:five_prime_UTR 40.0%
!! TTTTCCGAACGAAGCTTTGT+TGG + tig0041667:13672-13691 Msa1461710:five_prime_UTR 40.0%
ATAGCGAAGACGAAAAGCTT+CGG - tig0041667:13715-13734 None:intergenic 40.0%
GAAGGAGAAAATTAGGGCAA+CGG - tig0041667:13740-13759 None:intergenic 40.0%
AGAGGAATCAGAATCTTCGA+TGG - tig0041667:13785-13804 None:intergenic 40.0%
TTGGATTGATACCGAGGAAT+TGG - tig0041667:13846-13865 None:intergenic 40.0%
! GAGATTTTGGATTGATACCG+AGG - tig0041667:13852-13871 None:intergenic 40.0%
!! CACCACAGTAACATCGATTT+AGG - tig0041667:13988-14007 None:intergenic 40.0%
CATTCAATCCTTGCAGAATG+AGG + tig0041667:14220-14239 Msa1461710:CDS 40.0%
! CTTTTCACTAGACCCTCTTT+AGG + tig0041667:14266-14285 Msa1461710:intron 40.0%
TCCTCAGAAAAAAGGGTCAT+TGG + tig0041667:14415-14434 Msa1461710:intron 40.0%
!!! TCCAATGACCCTTTTTTCTG+AGG - tig0041667:14419-14438 None:intergenic 40.0%
AGAAAGTGAACTGGGAATCT+CGG + tig0041667:14612-14631 Msa1461710:CDS 40.0%
GAGGATGTAAGTTGTACACT+TGG + tig0041667:14680-14699 Msa1461710:CDS 40.0%
ACACGCACACAAACAAGAAT+AGG - tig0041667:14757-14776 None:intergenic 40.0%
!! AAAAAGAGTGTCGTGGCTGA+GGG - tig0041667:13363-13382 None:intergenic 45.0%
!! AAAAAAGAGTGTCGTGGCTG+AGG - tig0041667:13364-13383 None:intergenic 45.0%
TTTCTCCTTCGTTACTTCCG+AGG + tig0041667:13750-13769 Msa1461710:CDS 45.0%
GATACCGAGGAATTGGATCT+TGG - tig0041667:13839-13858 None:intergenic 45.0%
AGAAGCAACCTCATTCTGCA+AGG - tig0041667:14231-14250 None:intergenic 45.0%
GAATGAGGTTGCTTCTCTTC+AGG + tig0041667:14235-14254 Msa1461710:CDS 45.0%
GAAAGTGAACTGGGAATCTC+GGG + tig0041667:14613-14632 Msa1461710:CDS 45.0%
!! AAAAAGAGTGTCGTGGCTGA+GGG - tig0041667:13363-13382 None:intergenic 45.0%
!! AAAAAAGAGTGTCGTGGCTG+AGG - tig0041667:13364-13383 None:intergenic 45.0%
TTTCTCCTTCGTTACTTCCG+AGG + tig0041667:13750-13769 Msa1461710:CDS 45.0%
GATACCGAGGAATTGGATCT+TGG - tig0041667:13839-13858 None:intergenic 45.0%
AGAAGCAACCTCATTCTGCA+AGG - tig0041667:14231-14250 None:intergenic 45.0%
GAATGAGGTTGCTTCTCTTC+AGG + tig0041667:14235-14254 Msa1461710:CDS 45.0%
GAAAGTGAACTGGGAATCTC+GGG + tig0041667:14613-14632 Msa1461710:CDS 45.0%
!! ATTAATTGAATAATTAAAAA+AGG - tig0041667:13427-13446 None:intergenic 5.0%
!! ATAAAAAAAAAAAAAAAACT+TGG - tig0041667:13953-13972 None:intergenic 5.0%
!! ATTAATTGAATAATTAAAAA+AGG - tig0041667:13427-13446 None:intergenic 5.0%
!! ATAAAAAAAAAAAAAAAACT+TGG - tig0041667:13953-13972 None:intergenic 5.0%
!! TCCGAACGAAGCTTTGTTGG+CGG + tig0041667:13675-13694 Msa1461710:five_prime_UTR 50.0%
ACCGCCAACAAAGCTTCGTT+CGG - tig0041667:13679-13698 None:intergenic 50.0%
!! AGCTTTGTTGGCGGTGTTGA+TGG + tig0041667:13684-13703 Msa1461710:exon 50.0%
TTCGATGGAAACATCGGCCT+CGG - tig0041667:13770-13789 None:intergenic 50.0%
AAAAGGGTCATTGGATGCCG+AGG + tig0041667:14424-14443 Msa1461710:CDS 50.0%
GACCTGCTTCTGTAGTTCAC+CGG - tig0041667:14477-14496 None:intergenic 50.0%
!! TCCGAACGAAGCTTTGTTGG+CGG + tig0041667:13675-13694 Msa1461710:five_prime_UTR 50.0%
ACCGCCAACAAAGCTTCGTT+CGG - tig0041667:13679-13698 None:intergenic 50.0%
!! AGCTTTGTTGGCGGTGTTGA+TGG + tig0041667:13684-13703 Msa1461710:exon 50.0%
TTCGATGGAAACATCGGCCT+CGG - tig0041667:13770-13789 None:intergenic 50.0%
AAAAGGGTCATTGGATGCCG+AGG + tig0041667:14424-14443 Msa1461710:CDS 50.0%
GACCTGCTTCTGTAGTTCAC+CGG - tig0041667:14477-14496 None:intergenic 50.0%
GCGAAGACGAAAAGCTTCGG+AGG - tig0041667:13712-13731 None:intergenic 55.0%
ATCGGCCTCGGAAGTAACGA+AGG - tig0041667:13758-13777 None:intergenic 55.0%
AGCCTTTCCAACCTGCTCCT+CGG - tig0041667:14444-14463 None:intergenic 55.0%
TGCCGGTGAACTACAGAAGC+AGG + tig0041667:14472-14491 Msa1461710:CDS 55.0%
GCGAAGACGAAAAGCTTCGG+AGG - tig0041667:13712-13731 None:intergenic 55.0%
ATCGGCCTCGGAAGTAACGA+AGG - tig0041667:13758-13777 None:intergenic 55.0%
AGCCTTTCCAACCTGCTCCT+CGG - tig0041667:14444-14463 None:intergenic 55.0%
TGCCGGTGAACTACAGAAGC+AGG + tig0041667:14472-14491 Msa1461710:CDS 55.0%
GTCATTGGATGCCGAGGAGC+AGG + tig0041667:14430-14449 Msa1461710:CDS 60.0%
TTGGATGCCGAGGAGCAGGT+TGG + tig0041667:14434-14453 Msa1461710:CDS 60.0%
! TGCCGAGGAGCAGGTTGGAA+AGG + tig0041667:14439-14458 Msa1461710:CDS 60.0%
GGAAAGGCTCATGCACGTGC+CGG + tig0041667:14455-14474 Msa1461710:CDS 60.0%
GTCATTGGATGCCGAGGAGC+AGG + tig0041667:14430-14449 Msa1461710:CDS 60.0%
TTGGATGCCGAGGAGCAGGT+TGG + tig0041667:14434-14453 Msa1461710:CDS 60.0%
! TGCCGAGGAGCAGGTTGGAA+AGG + tig0041667:14439-14458 Msa1461710:CDS 60.0%
GGAAAGGCTCATGCACGTGC+CGG + tig0041667:14455-14474 Msa1461710:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0041667 gene 13264 14781 13264 ID=Msa1461710;Name=Msa1461710
tig0041667 mRNA 13264 14781 13264 ID=Msa1461710-mRNA-1;Parent=Msa1461710;Name=Msa1461710-mRNA-1;_AED=0.00;_eAED=0.00;_QI=439|1|1|1|1|1|4|75|161
tig0041667 exon 13264 13853 13264 ID=Msa1461710-mRNA-1:exon:23285;Parent=Msa1461710-mRNA-1
tig0041667 exon 14129 14256 14129 ID=Msa1461710-mRNA-1:exon:23286;Parent=Msa1461710-mRNA-1
tig0041667 exon 14422 14493 14422 ID=Msa1461710-mRNA-1:exon:23287;Parent=Msa1461710-mRNA-1
tig0041667 exon 14572 14781 14572 ID=Msa1461710-mRNA-1:exon:23288;Parent=Msa1461710-mRNA-1
tig0041667 five_prime_UTR 13264 13702 13264 ID=Msa1461710-mRNA-1:five_prime_utr;Parent=Msa1461710-mRNA-1
tig0041667 CDS 13703 13853 13703 ID=Msa1461710-mRNA-1:cds;Parent=Msa1461710-mRNA-1
tig0041667 CDS 14129 14256 14129 ID=Msa1461710-mRNA-1:cds;Parent=Msa1461710-mRNA-1
tig0041667 CDS 14422 14493 14422 ID=Msa1461710-mRNA-1:cds;Parent=Msa1461710-mRNA-1
tig0041667 CDS 14572 14706 14572 ID=Msa1461710-mRNA-1:cds;Parent=Msa1461710-mRNA-1
tig0041667 three_prime_UTR 14707 14781 14707 ID=Msa1461710-mRNA-1:three_prime_utr;Parent=Msa1461710-mRNA-1
Gene Sequence

>Msa1461710

ATGGCGCCTCCGAAGCTTTTCGTCTTCGCTATTTCCGTTGCCCTAATTTTCTCCTTCGTTACTTCCGAGGCCGATGTTTCCATCGAAGATTCTGATTCCTCTGCTCTTAAGATCCAATTAGATCAACTCAATTCCAAGATCCAATTCCTCGAGTCTCAAATCAGTGAGAAAACACAAGAATTGAAGAAAAAGGATCAAGTAATTGCAGGAAAAGAAAAACTTTTCCAAGATAAGTTGAGTAGCATTCAATCCTTGCAGAATGAGGTTGCTTCTCTTCAGAAAAAAGGGTCATTGGATGCCGAGGAGCAGGTTGGAAAGGCTCATGCACGTGCCGGTGAACTACAGAAGCAGGTTGACAAGCTTAAAAGCGAACTCGAAGCACAAAACAGTGAGAAAGTGAACTGGGAATCTCGGGTAGCCAAGTTAGAGAAAAAGATTCATGATTTGAACTCAAAACTAGAGGATGTAAGTTGTACACTTGGCTAG
Protein sequence

>Msa1461710

MAPPKLFVFAISVALIFSFVTSEADVSIEDSDSSALKIQLDQLNSKIQFLESQISEKTQELKKKDQVIAGKEKLFQDKLSSIQSLQNEVASLQKKGSLDAEEQVGKAHARAGELQKQVDKLKSELEAQNSEKVNWESRVAKLEKKIHDLNSKLEDVSCTLG*