AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1348540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1348540 MtrunA17_Chr3g0139331 90.909 352 22 6 12 359 1 346 0.0 598
Msa1348540 MtrunA17_Chr1g0147421 60.326 368 123 12 1 359 8 361 3.10e-135 389
Msa1348540 MtrunA17_Chr6g0484441 71.023 176 38 3 19 184 2 174 8.22e-86 262
Msa1348540 MtrunA17_Chr2g0316971 71.338 157 42 1 22 175 23 179 8.89e-81 251
Msa1348540 MtrunA17_Chr4g0060931 64.740 173 56 2 8 177 3 173 2.74e-78 244
Msa1348540 MtrunA17_Chr3g0091921 70.625 160 42 3 21 177 15 172 2.83e-76 237
Msa1348540 MtrunA17_Chr6g0453451 62.778 180 56 5 1 177 5 176 1.55e-71 226
Msa1348540 MtrunA17_Chr7g0253011 53.738 214 81 6 17 221 10 214 1.45e-70 225
Msa1348540 MtrunA17_Chr6g0461661 54.922 193 76 2 22 211 18 202 3.04e-69 221
Msa1348540 MtrunA17_Chr7g0217721 52.404 208 73 4 25 216 22 219 6.30e-67 214
Msa1348540 MtrunA17_Chr3g0144271 64.336 143 50 1 10 151 11 153 6.44e-64 209
Msa1348540 MtrunA17_Chr7g0263931 45.662 219 106 3 12 225 1 211 2.10e-60 197
Msa1348540 MtrunA17_Chr7g0217711 66.418 134 43 1 25 158 22 153 6.38e-60 191
Msa1348540 MtrunA17_Chr1g0183741 54.967 151 65 1 21 171 9 156 5.58e-59 192
Msa1348540 MtrunA17_Chr7g0261411 41.516 277 137 6 21 284 9 273 8.51e-59 192
Msa1348540 MtrunA17_Chr2g0312321 58.599 157 55 5 19 171 8 158 3.65e-58 191
Msa1348540 MtrunA17_Chr2g0309331 50.602 166 77 3 16 178 4 167 1.98e-57 190
Msa1348540 MtrunA17_Chr2g0318101 48.588 177 73 2 15 176 8 181 2.84e-57 190
Msa1348540 MtrunA17_Chr3g0124761 52.601 173 75 3 17 185 2 171 4.21e-57 187
Msa1348540 MtrunA17_Chr8g0359921 53.179 173 75 3 21 189 13 183 1.72e-56 187
Msa1348540 MtrunA17_Chr4g0017921 56.209 153 60 3 22 171 8 156 5.09e-56 186
Msa1348540 MtrunA17_Chr4g0042561 51.176 170 74 3 12 176 1 166 1.09e-55 183
Msa1348540 MtrunA17_Chr2g0318081 55.000 160 65 3 21 177 15 170 1.14e-55 186
Msa1348540 MtrunA17_Chr5g0417791 53.012 166 69 3 22 181 3 165 1.32e-55 182
Msa1348540 MtrunA17_Chr7g0252971 50.296 169 72 2 16 172 2 170 3.17e-55 184
Msa1348540 MtrunA17_Chr5g0398971 52.941 153 68 2 22 171 7 158 3.28e-55 184
Msa1348540 MtrunA17_Chr4g0047841 51.412 177 62 4 22 174 15 191 7.67e-55 183
Msa1348540 MtrunA17_Chr4g0056541 41.423 239 108 6 22 257 7 216 1.05e-54 183
Msa1348540 MtrunA17_Chr5g0405211 52.564 156 68 3 19 171 5 157 1.27e-54 183
Msa1348540 MtrunA17_Chr4g0018391 53.595 153 65 3 22 171 7 156 1.70e-54 182
Msa1348540 MtrunA17_Chr6g0481091 55.484 155 64 3 22 173 6 158 4.70e-54 178
Msa1348540 MtrunA17_Chr8g0346001 49.711 173 72 3 12 171 5 175 5.16e-54 183
Msa1348540 MtrunA17_Chr7g0214071 48.649 185 81 4 19 200 12 185 1.18e-53 177
Msa1348540 MtrunA17_Chr2g0326361 51.553 161 73 2 21 176 13 173 1.56e-53 179
Msa1348540 MtrunA17_Chr8g0384721 52.469 162 69 3 22 178 7 165 6.47e-53 176
Msa1348540 MtrunA17_Chr2g0309891 55.414 157 62 4 21 172 5 158 1.15e-52 177
Msa1348540 MtrunA17_Chr3g0109821 55.769 156 63 3 21 172 5 158 2.49e-52 184
Msa1348540 MtrunA17_Chr5g0433781 54.839 155 65 3 21 172 5 157 3.62e-52 183
Msa1348540 MtrunA17_Chr1g0200561 42.718 206 101 4 19 210 16 218 5.57e-52 176
Msa1348540 MtrunA17_Chr8g0372121 40.367 218 114 6 19 233 3 207 1.06e-51 174
Msa1348540 MtrunA17_Chr3g0092671 45.957 235 100 8 24 248 7 224 1.29e-51 179
Msa1348540 MtrunA17_Chr3g0130731 50.000 164 75 3 19 178 4 164 2.12e-51 172
Msa1348540 MtrunA17_Chr8g0361731 48.864 176 77 3 12 174 1 176 4.23e-50 172
Msa1348540 MtrunA17_Chr1g0197361 49.223 193 81 6 24 211 10 190 5.26e-50 176
Msa1348540 MtrunA17_Chr6g0453131 48.023 177 77 3 10 174 3 176 9.49e-49 168
Msa1348540 MtrunA17_Chr5g0417001 46.857 175 81 2 12 174 1 175 4.01e-48 167
Msa1348540 MtrunA17_Chr5g0400461 40.517 232 112 6 21 228 5 234 4.82e-47 162
Msa1348540 MtrunA17_Chr4g0076731 48.718 156 78 2 18 173 50 203 2.63e-46 163
Msa1348540 MtrunA17_Chr5g0428991 41.633 245 131 8 22 258 25 265 4.28e-46 166
Msa1348540 MtrunA17_Chr3g0128151 55.195 154 64 3 21 171 21 172 7.34e-46 165
Msa1348540 MtrunA17_Chr3g0130101 49.045 157 75 3 24 177 9 163 1.55e-45 159
Msa1348540 MtrunA17_Chr5g0442771 41.081 185 98 2 18 191 14 198 2.18e-44 155
Msa1348540 MtrunA17_Chr4g0054791 46.199 171 78 4 21 182 5 170 9.89e-44 153
Msa1348540 MtrunA17_Chr1g0197351 48.171 164 74 3 21 175 41 202 1.36e-43 157
Msa1348540 MtrunA17_Chr3g0128111 53.333 150 65 3 25 171 45 192 1.69e-43 150
Msa1348540 MtrunA17_Chr1g0201021 50.000 158 72 4 24 177 21 175 6.10e-43 156
Msa1348540 MtrunA17_Chr8g0364791 45.283 159 82 3 22 177 6 162 3.02e-42 152
Msa1348540 MtrunA17_Chr4g0038751 45.283 159 82 2 19 176 12 166 1.53e-41 147
Msa1348540 MtrunA17_Chr3g0113001 63.063 111 35 2 71 177 14 122 2.76e-41 146
Msa1348540 MtrunA17_Chr2g0311651 43.503 177 83 4 17 177 17 192 6.39e-41 145
Msa1348540 MtrunA17_Chr8g0385991 40.588 170 93 2 22 185 14 181 1.10e-40 142
Msa1348540 MtrunA17_Chr8g0384201 43.396 159 85 3 22 177 6 162 2.85e-40 148
Msa1348540 MtrunA17_Chr2g0311661 41.398 186 93 4 8 177 6 191 5.92e-40 142
Msa1348540 MtrunA17_Chr8g0345671 49.333 150 68 6 22 168 11 155 3.28e-36 135
Msa1348540 MtrunA17_Chr3g0131911 42.593 162 82 3 22 174 14 173 3.64e-36 131
Msa1348540 MtrunA17_Chr8g0345691 44.667 150 75 5 22 168 12 156 1.33e-33 129
Msa1348540 MtrunA17_Chr4g0026141 39.645 169 92 4 19 178 2 169 1.39e-33 125
Msa1348540 MtrunA17_Chr3g0113031 59.000 100 34 2 83 177 1 98 1.70e-32 122
Msa1348540 MtrunA17_Chr4g0050701 37.427 171 87 3 22 180 11 173 2.46e-32 119
Msa1348540 MtrunA17_Chr2g0321631 41.975 162 83 6 23 174 5 165 3.07e-32 121
Msa1348540 MtrunA17_Chr2g0321741 35.882 170 89 4 41 198 11 172 1.34e-31 122
Msa1348540 MtrunA17_Chr8g0345711 42.466 146 78 4 19 161 9 151 2.43e-31 116
Msa1348540 MtrunA17_Chr7g0266701 36.257 171 96 6 20 178 2 171 3.95e-29 113
Msa1348540 MtrunA17_Chr8g0345701 43.750 144 61 5 21 147 6 146 4.57e-29 110
Msa1348540 MtrunA17_Chr8g0345731 40.132 152 84 5 22 168 24 173 5.67e-28 107
Msa1348540 MtrunA17_Chr8g0345721 36.585 164 66 4 21 147 29 191 2.91e-26 104
Msa1348540 MtrunA17_Chr7g0243371 51.948 77 37 0 75 151 17 93 6.41e-24 95.1
Msa1348540 MtrunA17_Chr8g0384351 40.000 150 69 5 22 171 10 138 9.49e-24 96.7
Msa1348540 MtrunA17_Chr8g0345741 40.336 119 67 3 33 148 2 119 1.10e-22 92.8
Msa1348540 MtrunA17_Chr7g0251661 34.559 136 83 5 16 149 4 135 1.46e-21 90.1
Msa1348540 MtrunA17_Chr3g0130321 35.714 196 95 9 17 192 2 186 6.77e-21 89.7
Msa1348540 MtrunA17_Chr7g0251651 33.803 142 85 6 10 149 9 143 1.47e-17 80.1
Msa1348540 MtrunA17_Chr7g0251671 30.147 136 89 4 16 149 4 135 1.09e-16 76.6
Msa1348540 MtrunA17_Chr3g0113011 61.224 49 19 0 22 70 19 67 1.68e-15 70.9
Msa1348540 MtrunA17_Chr3g0113041 60.000 45 18 0 26 70 23 67 3.53e-14 67.0
Msa1348540 MtrunA17_Chr4g0040541 30.303 165 92 6 22 169 48 206 1.92e-13 70.1
Msa1348540 MtrunA17_Chr2g0324961 32.919 161 83 7 9 149 34 189 2.28e-13 69.7
Msa1348540 MtrunA17_Chr2g0282871 30.726 179 101 7 8 169 38 210 1.24e-12 67.8
Msa1348540 MtrunA17_Chr8g0367761 29.381 194 112 8 8 182 53 240 1.34e-12 67.0
Msa1348540 MtrunA17_Chr7g0274971 29.167 168 106 7 28 187 11 173 3.54e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1348540 AT2G24430.2 49.718 354 124 8 13 357 7 315 9.36e-102 303
Msa1348540 AT2G24430.1 49.718 354 124 8 13 357 7 315 9.36e-102 303
Msa1348540 AT3G18400.1 72.956 159 41 1 19 177 2 158 2.26e-84 258
Msa1348540 AT5G53950.1 68.519 162 48 1 14 172 9 170 5.37e-80 249
Msa1348540 AT3G15170.1 68.987 158 46 1 19 173 17 174 5.29e-77 239
Msa1348540 AT5G61430.1 67.683 164 48 2 22 182 16 177 7.81e-77 240
Msa1348540 AT1G76420.1 46.743 261 125 3 10 258 7 265 3.43e-75 236
Msa1348540 AT5G07680.2 65.854 164 51 2 22 182 3 164 3.91e-75 235
Msa1348540 AT5G07680.1 65.854 164 51 2 22 182 17 178 6.03e-75 235
Msa1348540 AT5G39610.1 61.538 182 63 3 1 179 1 178 1.29e-73 230
Msa1348540 AT5G18270.2 56.650 203 75 5 16 211 14 210 1.35e-72 229
Msa1348540 AT5G18270.1 56.158 203 76 5 16 211 14 210 4.76e-72 228
Msa1348540 AT3G04060.1 46.931 277 118 9 16 281 12 270 4.21e-69 220
Msa1348540 AT3G29035.1 58.791 182 68 3 1 177 1 180 2.82e-66 212
Msa1348540 AT2G18060.3 47.150 193 89 4 21 210 8 190 5.74e-59 195
Msa1348540 AT2G18060.1 47.150 193 89 4 21 210 8 190 5.74e-59 195
Msa1348540 AT3G12977.1 53.459 159 70 2 19 175 15 171 6.41e-59 192
Msa1348540 AT3G10500.1 58.537 164 63 3 17 177 4 165 6.96e-59 199
Msa1348540 AT4G27410.2 54.717 159 67 3 21 177 13 168 1.06e-57 189
Msa1348540 AT1G33280.1 49.065 214 89 8 22 219 8 217 1.97e-57 189
Msa1348540 AT5G04410.1 56.707 164 66 3 17 177 4 165 1.01e-56 194
Msa1348540 AT3G04070.2 53.488 172 65 4 21 179 9 178 1.41e-56 188
Msa1348540 AT1G52890.1 52.663 169 77 2 21 188 13 179 3.46e-56 186
Msa1348540 AT1G69490.1 53.374 163 69 3 19 176 6 166 3.49e-56 184
Msa1348540 AT4G10350.1 52.941 170 74 3 22 187 9 176 3.75e-56 187
Msa1348540 AT3G15500.1 54.321 162 71 2 21 181 13 172 8.14e-56 185
Msa1348540 AT4G36160.1 38.521 257 134 9 14 262 2 242 1.58e-55 186
Msa1348540 AT4G36160.3 38.521 257 134 9 14 262 2 242 1.58e-55 186
Msa1348540 AT4G36160.2 38.521 257 134 9 14 262 6 246 1.69e-55 186
Msa1348540 AT1G56010.2 50.867 173 76 4 10 175 5 175 1.99e-55 184
Msa1348540 AT1G01720.1 54.037 161 66 3 22 177 7 164 2.16e-55 183
Msa1348540 AT4G28530.1 52.410 166 60 2 22 171 10 172 2.22e-55 185
Msa1348540 AT1G12260.2 54.248 153 64 3 22 171 7 156 2.65e-55 184
Msa1348540 AT5G62380.2 50.556 180 77 4 22 198 7 177 3.14e-55 184
Msa1348540 AT5G62380.1 50.556 180 77 4 22 198 7 177 3.14e-55 184
Msa1348540 AT1G12260.1 54.248 153 64 3 22 171 7 156 3.91e-55 186
Msa1348540 AT3G17730.1 49.171 181 87 3 22 199 6 184 2.30e-54 179
Msa1348540 AT5G08790.1 53.012 166 69 3 19 178 4 166 3.24e-54 180
Msa1348540 AT1G61110.1 52.381 168 66 3 22 176 16 182 3.42e-54 181
Msa1348540 AT4G27410.3 50.000 176 66 4 21 177 13 185 3.54e-54 181
Msa1348540 AT3G04070.1 48.936 188 65 4 21 179 9 194 4.80e-54 182
Msa1348540 AT1G62700.1 53.595 153 65 3 22 171 7 156 6.46e-54 182
Msa1348540 AT1G62700.2 53.595 153 65 3 22 171 7 156 6.46e-54 182
Msa1348540 AT1G77450.1 51.515 165 73 3 17 177 5 166 8.09e-54 178
Msa1348540 AT5G63790.2 53.614 166 68 3 19 178 57 219 1.26e-53 180
Msa1348540 AT5G63790.1 53.614 166 68 3 19 178 47 209 1.36e-53 179
Msa1348540 AT1G79580.3 51.250 160 72 3 15 171 10 166 2.92e-53 180
Msa1348540 AT1G79580.5 51.250 160 72 3 15 171 10 166 2.92e-53 180
Msa1348540 AT1G79580.4 51.250 160 72 3 15 171 10 166 2.92e-53 180
Msa1348540 AT1G79580.2 51.250 160 72 3 15 171 10 166 2.92e-53 180
Msa1348540 AT1G79580.1 51.250 160 72 3 15 171 10 166 2.92e-53 180
Msa1348540 AT1G65910.1 53.750 160 69 3 21 177 5 162 3.64e-53 186
Msa1348540 AT1G71930.2 50.000 156 72 3 19 171 6 158 4.88e-53 178
Msa1348540 AT1G71930.1 50.000 156 72 3 19 171 6 158 4.88e-53 178
Msa1348540 AT5G66300.1 51.299 154 70 2 21 171 11 162 2.08e-52 176
Msa1348540 AT2G46770.1 48.023 177 73 4 12 171 6 180 2.14e-51 175
Msa1348540 AT3G61910.1 44.615 195 89 4 12 189 1 193 2.21e-51 174
Msa1348540 AT3G03200.1 54.839 155 64 3 21 171 5 157 3.36e-51 177
Msa1348540 AT5G17260.1 55.414 157 60 4 21 171 5 157 4.96e-51 177
Msa1348540 AT5G13180.1 50.000 156 75 1 22 177 14 166 5.37e-51 171
Msa1348540 AT3G15510.1 50.307 163 69 3 26 176 21 183 7.29e-51 174
Msa1348540 AT5G46590.1 53.896 154 66 3 22 171 6 158 2.43e-49 167
Msa1348540 AT1G33060.1 55.484 155 64 3 20 171 22 174 3.43e-49 175
Msa1348540 AT1G33060.2 55.484 155 64 3 20 171 22 174 3.97e-49 175
Msa1348540 AT3G10490.1 50.943 159 72 3 21 175 26 182 4.17e-49 165
Msa1348540 AT3G10480.1 52.201 159 70 3 21 175 26 182 6.01e-49 171
Msa1348540 AT4G35580.1 55.484 155 64 3 20 171 7 159 1.21e-48 171
Msa1348540 AT4G35580.3 55.484 155 64 3 20 171 7 159 1.42e-48 171
Msa1348540 AT4G35580.2 55.484 155 64 3 20 171 7 159 1.55e-48 171
Msa1348540 AT2G02450.1 50.303 165 79 3 24 188 53 214 2.24e-48 167
Msa1348540 AT2G02450.2 50.303 165 79 3 24 188 53 214 2.38e-48 168
Msa1348540 AT5G39820.1 41.837 196 86 3 1 174 5 194 2.58e-48 166
Msa1348540 AT3G10480.2 52.830 159 68 4 21 175 26 181 3.71e-48 169
Msa1348540 AT1G32770.1 43.750 176 83 3 19 180 13 186 4.98e-48 166
Msa1348540 AT4G17980.1 51.899 158 67 3 21 171 5 160 6.12e-48 163
Msa1348540 AT5G61430.2 65.217 115 35 2 71 182 2 114 8.20e-48 163
Msa1348540 AT1G26870.1 48.193 166 76 2 19 174 13 178 9.42e-48 167
Msa1348540 AT3G10490.2 50.943 159 72 3 21 175 26 182 1.19e-47 167
Msa1348540 AT5G46590.2 57.778 135 54 2 22 154 6 139 1.42e-47 162
Msa1348540 AT4G17980.2 51.899 158 67 3 21 171 5 160 1.49e-47 163
Msa1348540 AT1G54330.1 51.948 154 66 4 21 171 5 153 2.01e-47 163
Msa1348540 AT2G33480.1 50.000 154 71 3 22 174 15 163 4.87e-46 158
Msa1348540 AT1G34180.3 50.318 157 73 3 24 177 18 172 7.93e-46 162
Msa1348540 AT2G33480.2 50.000 156 66 4 22 174 15 161 8.27e-46 157
Msa1348540 AT5G09330.5 49.057 159 76 3 22 177 6 162 9.67e-46 163
Msa1348540 AT5G09330.2 49.057 159 76 3 22 177 6 162 9.67e-46 163
Msa1348540 AT5G09330.4 49.057 159 76 3 22 177 6 162 9.67e-46 163
Msa1348540 AT5G09330.3 49.057 159 76 3 22 177 6 162 9.67e-46 163
Msa1348540 AT5G09330.1 49.057 159 76 3 22 177 6 162 9.67e-46 163
Msa1348540 AT1G52880.1 50.625 160 68 3 26 174 21 180 1.88e-45 158
Msa1348540 AT2G43000.1 46.452 155 79 2 24 176 20 172 4.19e-45 156
Msa1348540 AT1G34190.1 50.318 157 73 3 24 177 18 172 4.65e-45 162
Msa1348540 AT1G34180.1 50.318 157 73 3 24 177 18 172 6.08e-45 162
Msa1348540 AT5G64060.1 45.625 160 82 3 22 178 6 163 6.60e-45 158
Msa1348540 AT3G49530.2 51.613 155 71 3 20 171 11 164 3.68e-44 157
Msa1348540 AT3G49530.1 51.613 155 71 3 20 171 11 164 8.53e-44 157
Msa1348540 AT1G34180.4 46.746 169 73 3 24 177 18 184 8.54e-44 157
Msa1348540 AT3G10480.3 44.041 193 67 4 21 175 26 215 2.30e-43 157
Msa1348540 AT1G32870.1 50.575 174 73 5 9 177 1 166 3.28e-43 157
Msa1348540 AT1G32870.2 50.575 174 73 5 9 177 1 166 3.30e-43 157
Msa1348540 AT5G24590.2 44.271 192 95 5 21 201 12 202 3.96e-43 155
Msa1348540 AT1G34180.2 46.746 169 73 3 24 177 18 184 5.02e-43 157
Msa1348540 AT1G32870.3 50.000 180 74 6 6 177 31 202 7.12e-43 157
Msa1348540 AT2G17040.1 44.805 154 80 2 24 176 8 157 1.39e-41 147
Msa1348540 AT2G27300.1 47.682 151 70 3 21 170 13 155 3.06e-41 147
Msa1348540 AT1G32510.1 47.799 159 74 3 22 171 6 164 8.53e-41 145
Msa1348540 AT5G22290.1 41.243 177 92 4 21 192 20 189 3.47e-39 142
Msa1348540 AT3G12910.1 41.436 181 89 5 14 178 13 192 9.55e-39 140
Msa1348540 AT1G56010.1 55.963 109 42 2 71 175 2 108 3.01e-37 135
Msa1348540 AT3G12977.2 56.075 107 43 2 71 175 14 118 3.21e-37 134
Msa1348540 AT4G28530.2 52.344 128 45 1 22 133 10 137 3.78e-36 134
Msa1348540 AT3G44290.2 43.836 146 73 3 24 168 16 153 7.06e-35 128
Msa1348540 AT4G10350.2 50.400 125 56 3 67 187 7 129 2.75e-34 128
Msa1348540 AT3G44290.1 43.836 146 73 3 24 168 16 153 4.37e-34 129
Msa1348540 AT5G04395.1 42.069 145 70 2 19 149 25 169 1.61e-31 117
Msa1348540 AT5G64530.1 32.353 204 104 5 22 210 3 187 1.54e-28 110
Msa1348540 AT3G44350.2 39.157 166 93 5 20 178 3 167 1.21e-27 109
Msa1348540 AT4G01550.1 40.645 155 84 4 25 175 7 157 1.79e-26 110
Msa1348540 AT2G33480.3 50.495 101 47 2 75 174 8 106 1.92e-26 105
Msa1348540 AT5G64530.2 41.406 128 63 2 22 149 3 118 1.97e-26 103
Msa1348540 AT1G02230.1 39.735 151 80 7 23 168 4 148 8.25e-26 106
Msa1348540 AT5G22380.1 35.976 164 93 5 25 178 8 169 1.45e-25 103
Msa1348540 AT4G01520.1 35.196 179 103 7 23 192 5 179 2.53e-25 104
Msa1348540 AT3G04420.2 36.601 153 87 4 23 171 4 150 9.81e-25 102
Msa1348540 AT2G18060.2 42.342 111 54 3 100 210 2 102 1.22e-24 102
Msa1348540 AT3G04420.1 36.601 153 87 4 23 171 4 150 1.93e-24 102
Msa1348540 AT4G01540.4 37.584 149 84 5 25 168 7 151 2.18e-24 103
Msa1348540 AT4G01540.3 36.306 157 91 5 25 176 7 159 3.79e-24 102
Msa1348540 AT4G01540.2 37.584 149 84 5 25 168 7 151 4.55e-24 102
Msa1348540 AT4G01540.1 37.584 149 84 5 25 168 7 151 5.96e-24 102
Msa1348540 AT3G10490.4 56.627 83 32 2 95 175 2 82 8.06e-23 98.2
Msa1348540 AT3G10490.3 56.627 83 32 2 95 175 2 82 8.06e-23 98.2
Msa1348540 AT3G44350.1 41.045 134 73 4 20 148 3 135 8.83e-23 94.0
Msa1348540 AT1G02250.1 36.184 152 84 6 23 168 4 148 3.93e-22 96.7
Msa1348540 AT2G43000.2 42.708 96 51 2 83 176 1 94 1.78e-20 88.6
Msa1348540 AT1G02220.1 37.984 129 71 4 23 147 4 127 7.89e-20 90.1
Msa1348540 AT1G01010.1 37.013 154 81 6 25 168 6 153 4.95e-19 88.2
Msa1348540 AT5G14000.1 32.903 155 96 4 22 174 15 163 1.33e-17 80.9
Msa1348540 AT5G14000.2 36.719 128 75 3 22 147 15 138 1.98e-16 76.3
Msa1348540 AT3G04430.1 34.848 132 74 3 28 148 6 136 6.56e-16 75.9
Msa1348540 AT5G22290.2 40.625 96 46 3 101 192 2 90 6.82e-16 76.6
Msa1348540 AT3G56530.1 30.323 155 102 4 18 169 48 199 5.44e-15 75.5
Msa1348540 AT4G28500.1 31.928 166 88 8 22 169 59 217 7.71e-14 71.6
Msa1348540 AT5G50820.1 31.818 154 71 6 17 156 12 145 9.93e-14 69.7
Msa1348540 AT5G56620.2 30.682 176 87 8 22 169 43 211 4.14e-12 67.4
Msa1348540 AT5G56620.3 30.682 176 87 8 22 169 43 211 4.15e-12 67.4
Msa1348540 AT5G56620.1 30.682 176 87 8 22 169 43 211 5.24e-12 67.0

Find 98 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGAAGGATTCAGCATTTC+AGG 0.147743 tig0010470:-6336 Msa1348540:CDS
CAGAATATTATTAATAATAT+TGG 0.210903 tig0010470:-6174 Msa1348540:CDS
TGCTCATGCAACAATGAATA+TGG 0.229206 tig0010470:-6226 Msa1348540:CDS
GATATCAGATTTATGTTATT+AGG 0.247457 tig0010470:+6525 None:intergenic
TAATTAATTTAGTAGGAATT+AGG 0.248881 tig0010470:+6060 None:intergenic
CTAGAGGAGAGAAAAGTAAT+TGG 0.268976 tig0010470:-9298 Msa1348540:CDS
CCTATTTCCTGCATGCTATA+AGG 0.298476 tig0010470:+6549 None:intergenic
GACCAGGGATATAGAATTAA+TGG 0.299064 tig0010470:-9862 Msa1348540:CDS
CAATCCTGCTCTTGTATTGT+TGG 0.299835 tig0010470:+6575 None:intergenic
GCTCCTCGTAATTTCCTTTA+CGG 0.322347 tig0010470:-6456 Msa1348540:CDS
CTAACGATAATTAATTTAGT+AGG 0.351551 tig0010470:+6053 None:intergenic
GCATGGGTCTAGATACTTAC+TGG 0.357689 tig0010470:-6083 Msa1348540:CDS
AAAATGCAGGGTAGTTCAAC+TGG 0.366088 tig0010470:+6370 None:intergenic
ACATACCTTGTTTGTTCTAA+AGG 0.368370 tig0010470:+9241 None:intergenic
TGCTCTTGTATTGTTGGAAC+TGG 0.374259 tig0010470:+6581 None:intergenic
GAGCAACAAACACCGGATAC+TGG 0.377955 tig0010470:-9415 Msa1348540:CDS
TCCTGTGGTCTTCCAGTATC+CGG 0.379446 tig0010470:+9403 None:intergenic
CCTTATAGCATGCAGGAAAT+AGG 0.388121 tig0010470:-6549 Msa1348540:CDS
TTCCATTAATTCTATATCCC+TGG 0.403615 tig0010470:+9860 None:intergenic
TCAGGGCTTAACTTGAACCT+TGG 0.407322 tig0010470:-6318 Msa1348540:CDS
CTCAAATGGCAATAGGTACA+TGG 0.423108 tig0010470:-6118 Msa1348540:CDS
AGTATCCGGTGTTTGTTGCT+CGG 0.427325 tig0010470:+9417 None:intergenic
ATAATAACTCAAATGGCAAT+AGG 0.431575 tig0010470:-6125 Msa1348540:CDS
TCCGGTGTTTGTTGCTCGGT+TGG 0.434798 tig0010470:+9421 None:intergenic
TCATGCAGATACTGCATCAT+TGG 0.442369 tig0010470:+6492 None:intergenic
AACCTTGGATCGGGCGGAGG+AGG 0.448875 tig0010470:-6303 Msa1348540:CDS
CTCCTCCTCCGCCCGATCCA+AGG 0.458521 tig0010470:+6301 None:intergenic
CCTCCTGTTGCTGAAAATGC+AGG 0.464674 tig0010470:+6357 None:intergenic
TTACAACACAAACCACTTTG+CGG 0.465955 tig0010470:-6272 Msa1348540:CDS
AGATGGAGAAGGAGAGGACC+AGG 0.471304 tig0010470:-9878 Msa1348540:CDS
GAAGGCAAAGATGGGAGAAA+AGG 0.475981 tig0010470:-9495 Msa1348540:CDS
CAAAGTGGTTTGTGTTGTAA+TGG 0.484732 tig0010470:+6275 None:intergenic
AACGGCAATAATAACTCAAA+TGG 0.484848 tig0010470:-6132 Msa1348540:CDS
GGTTGGAATGAAGAAGACTT+TGG 0.485009 tig0010470:-9342 Msa1348540:CDS
TACATACCTGGTAGCTCCCA+TGG 0.488949 tig0010470:+9687 None:intergenic
GTTATTATTGCCGTTGCTCA+TGG 0.489391 tig0010470:+6140 None:intergenic
TAGAGGAGAGAAAAGTAATT+GGG 0.496077 tig0010470:-9297 Msa1348540:CDS
AACTGGGAATATTGCATCGT+TGG 0.496826 tig0010470:+6387 None:intergenic
CTTAACTTGAACCTTGGATC+GGG 0.501563 tig0010470:-6312 Msa1348540:CDS
AGGTGGATTTAGAGTGAATA+CGG 0.504474 tig0010470:+9261 None:intergenic
AGTTCCAACAATACAAGAGC+AGG 0.508263 tig0010470:-6579 Msa1348540:CDS
TGACAGTGTTACATCGGAGT+TGG 0.510341 tig0010470:-9363 Msa1348540:CDS
GCTCATGCAACAATGAATAT+GGG 0.513318 tig0010470:-6225 Msa1348540:CDS
AGAGATCGTAAATATCCAAC+GGG 0.520918 tig0010470:-9452 Msa1348540:CDS
CGGTTGGTTCTCACACCCGT+TGG 0.529136 tig0010470:+9437 None:intergenic
GGAAGAAAGTGGTGGAAAAG+AGG 0.529217 tig0010470:-9841 Msa1348540:CDS
TATGCTGATTCCGTCCGTAA+AGG 0.529302 tig0010470:+6442 None:intergenic
TGGCAATAGGTACATGGGAA+TGG 0.533447 tig0010470:-6112 Msa1348540:CDS
GCTTAACTTGAACCTTGGAT+CGG 0.537039 tig0010470:-6313 Msa1348540:CDS
CATGGGAATGGAGAATTGCA+TGG 0.544759 tig0010470:-6100 Msa1348540:CDS
GACATGTGCAGCAGGATGAA+TGG 0.545037 tig0010470:-6659 Msa1348540:intron
TACCTTGTTTGTTCTAAAGG+TGG 0.547876 tig0010470:+9244 None:intergenic
TTGAACCTTGGATCGGGCGG+AGG 0.550086 tig0010470:-6306 Msa1348540:CDS
CTCGTAATTTCCTTTACGGA+CGG 0.550106 tig0010470:-6452 Msa1348540:CDS
AAATCGAAATCCCGGTGGTA+GGG 0.551569 tig0010470:+9815 None:intergenic
GAGAAGGATTCAGCATTTCA+GGG 0.553123 tig0010470:-6335 Msa1348540:CDS
ACATGTGCAGCAGGATGAAT+GGG 0.554242 tig0010470:-6658 Msa1348540:intron
ATCTCAATAAATCTGAACCA+TGG 0.554434 tig0010470:-9704 Msa1348540:CDS
AGGATGAATGGGTGATCTGT+AGG 0.556960 tig0010470:-6647 Msa1348540:CDS
AGTGTTACATCGGAGTTGGT+TGG 0.560551 tig0010470:-9359 Msa1348540:CDS
AGGAAATTACGAGGAGCAGA+AGG 0.563910 tig0010470:+6462 None:intergenic
ATTGAATCCTTATAGCATGC+AGG 0.564559 tig0010470:-6556 Msa1348540:CDS
GAAATCGAAATCCCGGTGGT+AGG 0.566387 tig0010470:+9814 None:intergenic
TCTCAATAAATCTGAACCAT+GGG 0.566445 tig0010470:-9703 Msa1348540:CDS
TGCAGATACTGCATCATTGG+TGG 0.568804 tig0010470:+6495 None:intergenic
ACCAACCGAGCAACAAACAC+CGG 0.569937 tig0010470:-9422 Msa1348540:CDS
ATAGAATTAATGGAAGAAAG+TGG 0.574179 tig0010470:-9852 Msa1348540:CDS
GTGATGAGTTCTTCATCTGT+AGG 0.581162 tig0010470:+9789 None:intergenic
AACTTGAACCTTGGATCGGG+CGG 0.589134 tig0010470:-6309 Msa1348540:CDS
GTAGGATGAAATCGAAATCC+CGG 0.589979 tig0010470:+9807 None:intergenic
TCTGAACCATGGGAGCTACC+AGG 0.593672 tig0010470:-9693 Msa1348540:intron
TGTTGGAACTGGAATTGCAA+GGG 0.597117 tig0010470:+6592 None:intergenic
AAAAGAGGAAACCCTACCAC+CGG 0.597559 tig0010470:-9826 Msa1348540:CDS
AAATGTGGGGAATGTTGCAT+TGG 0.600516 tig0010470:+6249 None:intergenic
TTGTTGCATGAGCAAAATGT+GGG 0.601779 tig0010470:+6235 None:intergenic
ACCGGATACTGGAAGACCAC+AGG 0.606858 tig0010470:-9404 Msa1348540:CDS
TCAAATGGCAATAGGTACAT+GGG 0.607158 tig0010470:-6117 Msa1348540:CDS
CTCCTGTTGCTGAAAATGCA+GGG 0.608809 tig0010470:+6358 None:intergenic
GAGAGATCGTAAATATCCAA+CGG 0.612811 tig0010470:-9453 Msa1348540:CDS
ATGTTGCATTGGCCGCAAAG+TGG 0.617388 tig0010470:+6260 None:intergenic
CAAAGATGGGAGAAAAGGAA+TGG 0.621507 tig0010470:-9490 Msa1348540:CDS
ATGGGAATGGAGAATTGCAT+GGG 0.622042 tig0010470:-6099 Msa1348540:CDS
AATCTTTGACAGTGTTACAT+CGG 0.624512 tig0010470:-9369 Msa1348540:CDS
ATTGTTGCATGAGCAAAATG+TGG 0.631252 tig0010470:+6234 None:intergenic
GAATTAATGGAAGAAAGTGG+TGG 0.647512 tig0010470:-9849 Msa1348540:CDS
ACGTACAGATGGAGAAGGAG+AGG 0.648950 tig0010470:-9884 None:intergenic
ATCCACCTTTAGAACAAACA+AGG 0.652509 tig0010470:-9246 Msa1348540:intron
GATGGAGAAGGAGAGGACCA+GGG 0.657515 tig0010470:-9877 Msa1348540:CDS
AAAGAGGAAACCCTACCACC+GGG 0.660538 tig0010470:-9825 Msa1348540:CDS
GTACTAGAAACCATGAGCAA+CGG 0.660684 tig0010470:-6150 Msa1348540:CDS
AGATACTGCATCATTGGTGG+TGG 0.660857 tig0010470:+6498 None:intergenic
TACAAAGGCAGAGCTCCTAG+AGG 0.666043 tig0010470:-9314 Msa1348540:CDS
AAATGCAGGGTAGTTCAACT+GGG 0.672051 tig0010470:+6371 None:intergenic
GGTATACGTACAGATGGAGA+AGG 0.677565 tig0010470:-9889 None:intergenic
CGTCCGTAAAGGAAATTACG+AGG 0.696088 tig0010470:+6453 None:intergenic
TTGTTGGAACTGGAATTGCA+AGG 0.698502 tig0010470:+6591 None:intergenic
GGATGAAATCGAAATCCCGG+TGG 0.770141 tig0010470:+9810 None:intergenic
TGTTGCATGAGCAAAATGTG+GGG 0.786023 tig0010470:+6236 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATAATATATTAAATTT+GGG + tig0010470:8232-8251 None:intergenic 0.0%
!! TTATAATAATATATTAAATT+TGG + tig0010470:8233-8252 None:intergenic 0.0%
!! TTAATATTAAAACAATTAGT+GGG + tig0010470:7209-7228 None:intergenic 10.0%
!! TTTAATATTAAAACAATTAG+TGG + tig0010470:7210-7229 None:intergenic 10.0%
!! AAAAAATACTAATTATGTAA+CGG - tig0010470:7440-7459 Msa1348540:intron 10.0%
!! TAATTATTAATTTAATGCTT+TGG + tig0010470:7925-7944 None:intergenic 10.0%
!! AAAAAAAAAAAACTCAAAAT+GGG + tig0010470:8684-8703 None:intergenic 10.0%
!! AAAAAAAAAAAAACTCAAAA+TGG + tig0010470:8685-8704 None:intergenic 10.0%
!! TTAGTTTAATACTATAAAAT+TGG + tig0010470:8857-8876 None:intergenic 10.0%
!! CAGAATATTATTAATAATAT+TGG - tig0010470:9770-9789 Msa1348540:CDS 10.0%
!! AACAATTAACAACAAAAAAA+AGG - tig0010470:6337-6356 Msa1348540:CDS 15.0%
!! GTCTAAAAAATATTTATAAG+TGG - tig0010470:6978-6997 Msa1348540:intron 15.0%
!! CATGTTCAAATATTAAAAAT+GGG - tig0010470:7045-7064 Msa1348540:intron 15.0%
!!! AAAATTTAGTTTTTTCATAG+CGG + tig0010470:7071-7090 None:intergenic 15.0%
!! TGATAAACTAATACTAATAT+CGG - tig0010470:7363-7382 Msa1348540:intron 15.0%
!!! TTAAAATATATATAACTTGC+CGG + tig0010470:8440-8459 None:intergenic 15.0%
!!! TTTTTTTTTTAGCTTATCAT+TGG - tig0010470:8698-8717 Msa1348540:intron 15.0%
!! CAATTAATACGACTATAATA+AGG + tig0010470:6854-6873 None:intergenic 20.0%
!! TATGTATTTATAACTATCCT+AGG - tig0010470:6923-6942 Msa1348540:intron 20.0%
!!! CCATTTTTAATATTTGAACA+TGG + tig0010470:7047-7066 None:intergenic 20.0%
!! CCATGTTCAAATATTAAAAA+TGG - tig0010470:7044-7063 Msa1348540:intron 20.0%
!! TAAGTAAAACTAAGTTTGTA+TGG - tig0010470:7150-7169 Msa1348540:intron 20.0%
!! AAGTAAAACTAAGTTTGTAT+GGG - tig0010470:7151-7170 Msa1348540:intron 20.0%
!!! GATGATTCTTTTTAAGTTTT+TGG + tig0010470:7266-7285 None:intergenic 20.0%
!! AAAATGAGTCTTAAGTATAT+TGG - tig0010470:7300-7319 Msa1348540:intron 20.0%
!!! GATTTAATTTGCATTGTTAA+TGG - tig0010470:7462-7481 Msa1348540:intron 20.0%
!!! GTAATTGAGACTTTTATATT+TGG - tig0010470:7583-7602 Msa1348540:intron 20.0%
!!! TATAATTTGCCATTAAATCT+TGG + tig0010470:7869-7888 None:intergenic 20.0%
!! ACTATTTATTTCAATTTGTG+AGG - tig0010470:8191-8210 Msa1348540:intron 20.0%
!!! GTTCTAAAGTTACTTTTTAT+GGG + tig0010470:8575-8594 None:intergenic 20.0%
!!! TGTTCTAAAGTTACTTTTTA+TGG + tig0010470:8576-8595 None:intergenic 20.0%
!! AAGAAAAAGAAAAATTTGTG+AGG - tig0010470:8995-9014 Msa1348540:intron 20.0%
!! AGAAAAAGAAAAATTTGTGA+GGG - tig0010470:8996-9015 Msa1348540:intron 20.0%
!! TAATCTAACATGGTAAAAAT+TGG + tig0010470:9083-9102 None:intergenic 20.0%
!!! TCATTTTCTTTGCAAAATAA+AGG + tig0010470:9248-9267 None:intergenic 20.0%
!! GATATCAGATTTATGTTATT+AGG + tig0010470:9422-9441 None:intergenic 20.0%
! ATAGAATTAATGGAAGAAAG+TGG - tig0010470:6092-6111 Msa1348540:CDS 25.0%
!!! ATATCAGATTCTAGTTTTAC+AGG - tig0010470:6197-6216 Msa1348540:CDS 25.0%
! AGGTATGTAGTATAATATAC+AGG - tig0010470:6718-6737 Msa1348540:intron 25.0%
! TAATATACAGGCATAGATTT+AGG - tig0010470:6730-6749 Msa1348540:intron 25.0%
! AGGGTATGAAATTAAGTATA+TGG - tig0010470:6956-6975 Msa1348540:intron 25.0%
! TAAAAAATCGATAGACATCT+TGG + tig0010470:7687-7706 None:intergenic 25.0%
! CTATTGAATCCAAGATTTAA+TGG - tig0010470:7857-7876 Msa1348540:intron 25.0%
!!! TTTTATTTCATCAACGCTTT+TGG + tig0010470:8019-8038 None:intergenic 25.0%
! ATTAAATTTGGGAACTTCTA+CGG + tig0010470:8221-8240 None:intergenic 25.0%
!! ACAATTTTTGCTTTATGGAT+TGG + tig0010470:8463-8482 None:intergenic 25.0%
! AATCCATAAAGCAAAAATTG+TGG - tig0010470:8462-8481 Msa1348540:intron 25.0%
! ATCCATAAAGCAAAAATTGT+GGG - tig0010470:8463-8482 Msa1348540:intron 25.0%
! TGTCACATATGTCTTAAAAT+TGG + tig0010470:8652-8671 None:intergenic 25.0%
! TAAACTTGATCTTGCTTAAA+TGG + tig0010470:8773-8792 None:intergenic 25.0%
!! TTGAAACGTCTAATTTTCAT+CGG - tig0010470:8897-8916 Msa1348540:intron 25.0%
! ACATTTCATCTAATCTAACA+TGG + tig0010470:9093-9112 None:intergenic 25.0%
! TGTTAAGAAATCGAGTTAAA+AGG + tig0010470:9148-9167 None:intergenic 25.0%
! ATAATAACTCAAATGGCAAT+AGG - tig0010470:9819-9838 Msa1348540:CDS 25.0%
TTCCATTAATTCTATATCCC+TGG + tig0010470:6087-6106 None:intergenic 30.0%
ATCTCAATAAATCTGAACCA+TGG - tig0010470:6240-6259 Msa1348540:CDS 30.0%
TCTCAATAAATCTGAACCAT+GGG - tig0010470:6241-6260 Msa1348540:CDS 30.0%
! AGTTCGTGCATGAATATTTT+AGG - tig0010470:6426-6445 Msa1348540:CDS 30.0%
! GTTCGTGCATGAATATTTTA+GGG - tig0010470:6427-6446 Msa1348540:CDS 30.0%
AATCTTTGACAGTGTTACAT+CGG - tig0010470:6575-6594 Msa1348540:CDS 30.0%
!! AAGACTTTGGTCTTTTACAA+AGG - tig0010470:6615-6634 Msa1348540:CDS 30.0%
TAGAGGAGAGAAAAGTAATT+GGG - tig0010470:6647-6666 Msa1348540:CDS 30.0%
! ACATACCTTGTTTGTTCTAA+AGG + tig0010470:6706-6725 None:intergenic 30.0%
TCCTTAGCTTACTAATAATG+TGG - tig0010470:6765-6784 Msa1348540:intron 30.0%
ACCACATTATTAGTAAGCTA+AGG + tig0010470:6769-6788 None:intergenic 30.0%
AAAACTAAGTTTGTATGGGA+AGG - tig0010470:7155-7174 Msa1348540:intron 30.0%
CAATTACATACACAACTACT+AGG + tig0010470:7570-7589 None:intergenic 30.0%
TTCAAATTCACACAAATGCT+CGG - tig0010470:7606-7625 Msa1348540:intron 30.0%
!! ATATAGCACTCAAAAGTGTT+AGG + tig0010470:7726-7745 None:intergenic 30.0%
ACTTTACAATTCCACTTGTA+TGG + tig0010470:7832-7851 None:intergenic 30.0%
!! ACCAAATATTTTGAGCGTAT+CGG - tig0010470:7895-7914 Msa1348540:intron 30.0%
TCCATAAAGCAAAAATTGTG+GGG - tig0010470:8464-8483 Msa1348540:intron 30.0%
!! TAGGTTTCTAACTTGCTTTA+TGG + tig0010470:8490-8509 None:intergenic 30.0%
! TCATTTTCACTTCAATGCAT+AGG + tig0010470:8509-8528 None:intergenic 30.0%
ACAATCTTATGTTGCAGTTA+TGG - tig0010470:8548-8567 Msa1348540:intron 30.0%
TTAAAATTGGTCATGCATAC+CGG + tig0010470:8639-8658 None:intergenic 30.0%
TAAGACATATGTGACAAACA+TGG - tig0010470:8656-8675 Msa1348540:intron 30.0%
AAGACATATGTGACAAACAT+GGG - tig0010470:8657-8676 Msa1348540:intron 30.0%
TGTAAATGTCTGATTGTGAT+CGG - tig0010470:8826-8845 Msa1348540:intron 30.0%
TCATATAAGGCTGCTTAAAT+TGG + tig0010470:8961-8980 None:intergenic 30.0%
CGCATAAACTAAGTCATATA+AGG + tig0010470:8974-8993 None:intergenic 30.0%
GGAGTTTATGTGAAATTGAT+TGG - tig0010470:9017-9036 Msa1348540:intron 30.0%
! CAGGCATCATATTGAATTTT+TGG + tig0010470:9186-9205 None:intergenic 30.0%
AACGGCAATAATAACTCAAA+TGG - tig0010470:9812-9831 Msa1348540:CDS 30.0%
GACCAGGGATATAGAATTAA+TGG - tig0010470:6082-6101 Msa1348540:CDS 35.0%
GAATTAATGGAAGAAAGTGG+TGG - tig0010470:6095-6114 Msa1348540:CDS 35.0%
!! GTGCATGAATATTTTAGGGA+AGG - tig0010470:6431-6450 Msa1348540:CDS 35.0%
!! TATTTTAGGGAAGGCAAAGA+TGG - tig0010470:6440-6459 Msa1348540:CDS 35.0%
!! ATTTTAGGGAAGGCAAAGAT+GGG - tig0010470:6441-6460 Msa1348540:CDS 35.0%
GAGAGATCGTAAATATCCAA+CGG - tig0010470:6491-6510 Msa1348540:CDS 35.0%
AGAGATCGTAAATATCCAAC+GGG - tig0010470:6492-6511 Msa1348540:CDS 35.0%
!! CAATTACTTTTCTCTCCTCT+AGG + tig0010470:6648-6667 None:intergenic 35.0%
CTAGAGGAGAGAAAAGTAAT+TGG - tig0010470:6646-6665 Msa1348540:CDS 35.0%
! AGGTGGATTTAGAGTGAATA+CGG + tig0010470:6686-6705 None:intergenic 35.0%
!! ATCCACCTTTAGAACAAACA+AGG - tig0010470:6698-6717 Msa1348540:intron 35.0%
!! TACCTTGTTTGTTCTAAAGG+TGG + tig0010470:6703-6722 None:intergenic 35.0%
CCATCATCTGTAATTAGTGA+AGG + tig0010470:6890-6909 None:intergenic 35.0%
CCTTCACTAATTACAGATGA+TGG - tig0010470:6887-6906 Msa1348540:intron 35.0%
TATCCTAGGATATGTGTTGA+GGG - tig0010470:6937-6956 Msa1348540:intron 35.0%
GATGACATATCTAACCATCA+GGG - tig0010470:7000-7019 Msa1348540:intron 35.0%
TCAAATTCACACAAATGCTC+GGG - tig0010470:7607-7626 Msa1348540:intron 35.0%
ATAGAATGCACTTGAGTCTT+CGG + tig0010470:7647-7666 None:intergenic 35.0%
GACATCTTGGAATAGTTTAG+TGG + tig0010470:7674-7693 None:intergenic 35.0%
ACCGATACGCTCAAAATATT+TGG + tig0010470:7899-7918 None:intergenic 35.0%
!!! TGACGTTTTTTCTTGTGAGA+TGG - tig0010470:8138-8157 Msa1348540:intron 35.0%
AAGGTTGGATTTCGATAAGA+TGG + tig0010470:8256-8275 None:intergenic 35.0%
AACACGTTCTTATTACCTCA+AGG + tig0010470:8314-8333 None:intergenic 35.0%
! GGGAAAATTTTTCTCCAAAG+TGG + tig0010470:8375-8394 None:intergenic 35.0%
! AGATGCTCTAAGTTATTCAC+CGG - tig0010470:8617-8636 Msa1348540:intron 35.0%
!! TCTTGTGTTGCTTTAAAGTG+AGG - tig0010470:8733-8752 Msa1348540:intron 35.0%
AAGGCTGCTTAAATTGGAAT+TGG + tig0010470:8955-8974 None:intergenic 35.0%
TATACTAGTAAAGAGCAAGC+AGG + tig0010470:9205-9224 None:intergenic 35.0%
!! TGTAGGATTTTCAAGAAGAG+TGG - tig0010470:9314-9333 Msa1348540:CDS 35.0%
ATTGAATCCTTATAGCATGC+AGG - tig0010470:9388-9407 Msa1348540:CDS 35.0%
! CAAAGTGGTTTGTGTTGTAA+TGG + tig0010470:9672-9691 None:intergenic 35.0%
TTACAACACAAACCACTTTG+CGG - tig0010470:9672-9691 Msa1348540:intron 35.0%
TTGTTGCATGAGCAAAATGT+GGG + tig0010470:9712-9731 None:intergenic 35.0%
ATTGTTGCATGAGCAAAATG+TGG + tig0010470:9713-9732 None:intergenic 35.0%
TGCTCATGCAACAATGAATA+TGG - tig0010470:9718-9737 Msa1348540:CDS 35.0%
GCTCATGCAACAATGAATAT+GGG - tig0010470:9719-9738 Msa1348540:CDS 35.0%
TCAAATGGCAATAGGTACAT+GGG - tig0010470:9827-9846 Msa1348540:CDS 35.0%
GTAGGATGAAATCGAAATCC+CGG + tig0010470:6140-6159 None:intergenic 40.0%
GTGATGAGTTCTTCATCTGT+AGG + tig0010470:6158-6177 None:intergenic 40.0%
CAAAGATGGGAGAAAAGGAA+TGG - tig0010470:6454-6473 Msa1348540:CDS 40.0%
! GATTTCTCGATCTTTTCCTG+TGG + tig0010470:6559-6578 None:intergenic 40.0%
GGTTGGAATGAAGAAGACTT+TGG - tig0010470:6602-6621 Msa1348540:CDS 40.0%
CTATCCTAGGATATGTGTTG+AGG - tig0010470:6936-6955 Msa1348540:intron 40.0%
ATACCCTCAACACATATCCT+AGG + tig0010470:6943-6962 None:intergenic 40.0%
GGATGACATATCTAACCATC+AGG - tig0010470:6999-7018 Msa1348540:intron 40.0%
ATTCCACTTGTATGGTTAGC+AGG + tig0010470:7824-7843 None:intergenic 40.0%
! TCTAGAACTGGCTAGAAAGT+AGG + tig0010470:8337-8356 None:intergenic 40.0%
! TACTTTCTAGCCAGTTCTAG+AGG - tig0010470:8336-8355 Msa1348540:intron 40.0%
! TTCTGCAATAACCGGTTCTT+GGG + tig0010470:8407-8426 None:intergenic 40.0%
! TTTCTGCAATAACCGGTTCT+TGG + tig0010470:8408-8427 None:intergenic 40.0%
ACCGGTTATTGCAGAAATTG+TGG - tig0010470:8411-8430 Msa1348540:intron 40.0%
CCCACAATTTCTGCAATAAC+CGG + tig0010470:8415-8434 None:intergenic 40.0%
CCGGTTATTGCAGAAATTGT+GGG - tig0010470:8412-8431 Msa1348540:intron 40.0%
CGGTTATTGCAGAAATTGTG+GGG - tig0010470:8413-8432 Msa1348540:intron 40.0%
! GCCCCACAATTTTTGCTTTA+TGG + tig0010470:8468-8487 None:intergenic 40.0%
TCAGAGACTATAAGCGTTCA+AGG - tig0010470:8800-8819 Msa1348540:intron 40.0%
!! ATTTTCAAGAAGAGTGGCAG+TGG - tig0010470:9320-9339 Msa1348540:CDS 40.0%
TGTTGGAACTGGAATTGCAA+GGG + tig0010470:9355-9374 None:intergenic 40.0%
TTGTTGGAACTGGAATTGCA+AGG + tig0010470:9356-9375 None:intergenic 40.0%
TGCTCTTGTATTGTTGGAAC+TGG + tig0010470:9366-9385 None:intergenic 40.0%
AGTTCCAACAATACAAGAGC+AGG - tig0010470:9365-9384 Msa1348540:CDS 40.0%
CAATCCTGCTCTTGTATTGT+TGG + tig0010470:9372-9391 None:intergenic 40.0%
CCTATTTCCTGCATGCTATA+AGG + tig0010470:9398-9417 None:intergenic 40.0%
CCTTATAGCATGCAGGAAAT+AGG - tig0010470:9395-9414 Msa1348540:CDS 40.0%
TCATGCAGATACTGCATCAT+TGG + tig0010470:9455-9474 None:intergenic 40.0%
GCTCCTCGTAATTTCCTTTA+CGG - tig0010470:9488-9507 Msa1348540:CDS 40.0%
CTCGTAATTTCCTTTACGGA+CGG - tig0010470:9492-9511 Msa1348540:CDS 40.0%
AACTGGGAATATTGCATCGT+TGG + tig0010470:9560-9579 None:intergenic 40.0%
AAATGCAGGGTAGTTCAACT+GGG + tig0010470:9576-9595 None:intergenic 40.0%
AAAATGCAGGGTAGTTCAAC+TGG + tig0010470:9577-9596 None:intergenic 40.0%
GAGAAGGATTCAGCATTTCA+GGG - tig0010470:9609-9628 Msa1348540:intron 40.0%
! GCTTAACTTGAACCTTGGAT+CGG - tig0010470:9631-9650 Msa1348540:intron 40.0%
! CTTAACTTGAACCTTGGATC+GGG - tig0010470:9632-9651 Msa1348540:intron 40.0%
AAATGTGGGGAATGTTGCAT+TGG + tig0010470:9698-9717 None:intergenic 40.0%
TGTTGCATGAGCAAAATGTG+GGG + tig0010470:9711-9730 None:intergenic 40.0%
GTACTAGAAACCATGAGCAA+CGG - tig0010470:9794-9813 Msa1348540:CDS 40.0%
GTTATTATTGCCGTTGCTCA+TGG + tig0010470:9807-9826 None:intergenic 40.0%
CTCAAATGGCAATAGGTACA+TGG - tig0010470:9826-9845 Msa1348540:CDS 40.0%
ATGGGAATGGAGAATTGCAT+GGG - tig0010470:9845-9864 Msa1348540:CDS 40.0%
! GGAAGAAAGTGGTGGAAAAG+AGG - tig0010470:6103-6122 Msa1348540:CDS 45.0%
AAAAGAGGAAACCCTACCAC+CGG - tig0010470:6118-6137 Msa1348540:CDS 45.0%
AAATCGAAATCCCGGTGGTA+GGG + tig0010470:6132-6151 None:intergenic 45.0%
CACATACATACACTAGTGCG+TGG + tig0010470:6291-6310 None:intergenic 45.0%
GAAGGCAAAGATGGGAGAAA+AGG - tig0010470:6449-6468 Msa1348540:CDS 45.0%
! AGTATCCGGTGTTTGTTGCT+CGG + tig0010470:6530-6549 None:intergenic 45.0%
TGACAGTGTTACATCGGAGT+TGG - tig0010470:6581-6600 Msa1348540:CDS 45.0%
! AGTGTTACATCGGAGTTGGT+TGG - tig0010470:6585-6604 Msa1348540:CDS 45.0%
! AACATGGCCTCCGATTTTAC+AGG + tig0010470:7031-7050 None:intergenic 45.0%
!! CCACATCATTCCTCTAGAAC+TGG + tig0010470:8349-8368 None:intergenic 45.0%
!! CCAGTTCTAGAGGAATGATG+TGG - tig0010470:8346-8365 Msa1348540:intron 45.0%
! GAATGATGTGGATGCCACTT+TGG - tig0010470:8358-8377 Msa1348540:intron 45.0%
ATTGCAGAAATTGTGGGGAC+CGG - tig0010470:8418-8437 Msa1348540:intron 45.0%
CTAATTGTGACATGTGCAGC+AGG - tig0010470:9277-9296 Msa1348540:CDS 45.0%
ACATGTGCAGCAGGATGAAT+GGG - tig0010470:9286-9305 Msa1348540:CDS 45.0%
AGGATGAATGGGTGATCTGT+AGG - tig0010470:9297-9316 Msa1348540:CDS 45.0%
AGATACTGCATCATTGGTGG+TGG + tig0010470:9449-9468 None:intergenic 45.0%
TGCAGATACTGCATCATTGG+TGG + tig0010470:9452-9471 None:intergenic 45.0%
AGGAAATTACGAGGAGCAGA+AGG + tig0010470:9485-9504 None:intergenic 45.0%
CGTCCGTAAAGGAAATTACG+AGG + tig0010470:9494-9513 None:intergenic 45.0%
!! TATGCTGATTCCGTCCGTAA+AGG + tig0010470:9505-9524 None:intergenic 45.0%
! TACCCTGCATTTTCAGCAAC+AGG - tig0010470:9584-9603 Msa1348540:intron 45.0%
CTCCTGTTGCTGAAAATGCA+GGG + tig0010470:9589-9608 None:intergenic 45.0%
! TTTTCAGCAACAGGAGGAGA+AGG - tig0010470:9593-9612 Msa1348540:intron 45.0%
GGAGAAGGATTCAGCATTTC+AGG - tig0010470:9608-9627 Msa1348540:intron 45.0%
! TCAGGGCTTAACTTGAACCT+TGG - tig0010470:9626-9645 Msa1348540:intron 45.0%
TGGCAATAGGTACATGGGAA+TGG - tig0010470:9832-9851 Msa1348540:CDS 45.0%
CATGGGAATGGAGAATTGCA+TGG - tig0010470:9844-9863 Msa1348540:CDS 45.0%
GCATGGGTCTAGATACTTAC+TGG - tig0010470:9861-9880 Msa1348540:CDS 45.0%
!!! ATTGTTTTAATATTAAAATT+TGG - tig0010470:7213-7232 Msa1348540:intron 5.0%
!!! TTGTTTTAATATTAAAATTT+GGG - tig0010470:7214-7233 Msa1348540:intron 5.0%
!! TATATTAAAAAAAAAAATTG+AGG - tig0010470:7741-7760 Msa1348540:intron 5.0%
AAAGAGGAAACCCTACCACC+GGG - tig0010470:6119-6138 Msa1348540:CDS 50.0%
GAAATCGAAATCCCGGTGGT+AGG + tig0010470:6133-6152 None:intergenic 50.0%
GGATGAAATCGAAATCCCGG+TGG + tig0010470:6137-6156 None:intergenic 50.0%
TACATACCTGGTAGCTCCCA+TGG + tig0010470:6260-6279 None:intergenic 50.0%
ACCAACCGAGCAACAAACAC+CGG - tig0010470:6522-6541 Msa1348540:CDS 50.0%
GAGCAACAAACACCGGATAC+TGG - tig0010470:6529-6548 Msa1348540:CDS 50.0%
TCCTGTGGTCTTCCAGTATC+CGG + tig0010470:6544-6563 None:intergenic 50.0%
TACAAAGGCAGAGCTCCTAG+AGG - tig0010470:6630-6649 Msa1348540:CDS 50.0%
! TTTTACAGGAACGGCCCTGA+TGG + tig0010470:7017-7036 None:intergenic 50.0%
CAGGGCCGTTCCTGTAAAAT+CGG - tig0010470:7018-7037 Msa1348540:intron 50.0%
! GGCCTCCGATTTTACAGGAA+CGG + tig0010470:7026-7045 None:intergenic 50.0%
CACTTGAGTCTTCGGTCTTG+AGG + tig0010470:7639-7658 None:intergenic 50.0%
TTGAGGCTCCTAAGATTGCG+AGG - tig0010470:7758-7777 Msa1348540:intron 50.0%
ACTTGTATGGTTAGCAGGCC+GGG + tig0010470:7819-7838 None:intergenic 50.0%
CACTTGTATGGTTAGCAGGC+CGG + tig0010470:7820-7839 None:intergenic 50.0%
GGAGATGCTCTTACGAAGGT+TGG + tig0010470:8271-8290 None:intergenic 50.0%
CGTTGGAGATGCTCTTACGA+AGG + tig0010470:8275-8294 None:intergenic 50.0%
CTCCAACGTTGTTCCATGCA+CGG - tig0010470:8287-8306 Msa1348540:intron 50.0%
ATTACCTCAAGGACCGTGCA+TGG + tig0010470:8303-8322 None:intergenic 50.0%
GACATGTGCAGCAGGATGAA+TGG - tig0010470:9285-9304 Msa1348540:CDS 50.0%
CCTCCTGTTGCTGAAAATGC+AGG + tig0010470:9590-9609 None:intergenic 50.0%
! CCTGCATTTTCAGCAACAGG+AGG - tig0010470:9587-9606 Msa1348540:intron 50.0%
AACTTGAACCTTGGATCGGG+CGG - tig0010470:9635-9654 Msa1348540:intron 50.0%
! ATGTTGCATTGGCCGCAAAG+TGG + tig0010470:9687-9706 None:intergenic 50.0%
TCTGAACCATGGGAGCTACC+AGG - tig0010470:6251-6270 Msa1348540:CDS 55.0%
GTGGCGTGTGTGTACATACC+TGG + tig0010470:6272-6291 None:intergenic 55.0%
! TCCGGTGTTTGTTGCTCGGT+TGG + tig0010470:6526-6545 None:intergenic 55.0%
ACCGGATACTGGAAGACCAC+AGG - tig0010470:6540-6559 Msa1348540:CDS 55.0%
GGCCGTTCCTGTAAAATCGG+AGG - tig0010470:7021-7040 Msa1348540:intron 55.0%
GGCATGTGCAAGGTGAGCTA+CGG + tig0010470:7791-7810 None:intergenic 55.0%
AGCTCACCTTGCACATGCCA+AGG - tig0010470:7792-7811 Msa1348540:intron 55.0%
GCTCACCTTGCACATGCCAA+GGG - tig0010470:7793-7812 Msa1348540:intron 55.0%
CGGCCTGCTAACCATACAAG+TGG - tig0010470:7818-7837 Msa1348540:intron 55.0%
GACCGTGCATGGAACAACGT+TGG + tig0010470:8292-8311 None:intergenic 55.0%
TGTTCCATGCACGGTCCTTG+AGG - tig0010470:8296-8315 Msa1348540:intron 55.0%
CGGTTCTTGGGCGTTCTTGA+GGG + tig0010470:8395-8414 None:intergenic 55.0%
CCTCAAGAACGCCCAAGAAC+CGG - tig0010470:8393-8412 Msa1348540:intron 55.0%
! CGGTTGGTTCTCACACCCGT+TGG + tig0010470:6510-6529 None:intergenic 60.0%
GCTCCTAAGATTGCGAGGCC+CGG - tig0010470:7763-7782 Msa1348540:intron 60.0%
TGCAAGGTGAGCTACGGTGC+CGG + tig0010470:7785-7804 None:intergenic 60.0%
CCGGTTCTTGGGCGTTCTTG+AGG + tig0010470:8396-8415 None:intergenic 60.0%
TTGAACCTTGGATCGGGCGG+AGG - tig0010470:9638-9657 Msa1348540:intron 60.0%
GTGCCGGGCCTCGCAATCTT+AGG + tig0010470:7769-7788 None:intergenic 65.0%
GCAAGGTGAGCTACGGTGCC+GGG + tig0010470:7784-7803 None:intergenic 65.0%
CCTTGCACATGCCAAGGGCC+CGG - tig0010470:7798-7817 Msa1348540:intron 65.0%
AACCTTGGATCGGGCGGAGG+AGG - tig0010470:9641-9660 Msa1348540:intron 65.0%
CCGGGCCCTTGGCATGTGCA+AGG + tig0010470:7801-7820 None:intergenic 70.0%
TGGTTAGCAGGCCGGGCCCT+TGG + tig0010470:7812-7831 None:intergenic 70.0%
CTCCTCCTCCGCCCGATCCA+AGG + tig0010470:9646-9665 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0010470 gene 6068 9898 6068 ID=Msa1348540;Name=Msa1348540
tig0010470 mRNA 6068 9898 6068 ID=Msa1348540-mRNA-1;Parent=Msa1348540;Name=Msa1348540-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.5|0|1|1|1|3|0|359
tig0010470 exon 9694 9898 9694 ID=Msa1348540-mRNA-1:exon:6486;Parent=Msa1348540-mRNA-1
tig0010470 exon 9247 9518 9247 ID=Msa1348540-mRNA-1:exon:6485;Parent=Msa1348540-mRNA-1
tig0010470 exon 6068 6670 6068 ID=Msa1348540-mRNA-1:exon:6484;Parent=Msa1348540-mRNA-1
tig0010470 CDS 9694 9898 9694 ID=Msa1348540-mRNA-1:cds;Parent=Msa1348540-mRNA-1
tig0010470 CDS 9247 9518 9247 ID=Msa1348540-mRNA-1:cds;Parent=Msa1348540-mRNA-1
tig0010470 CDS 6068 6670 6068 ID=Msa1348540-mRNA-1:cds;Parent=Msa1348540-mRNA-1
Gene Sequence

>Msa1348540

ATGGAGAAGGAGAGGACCAGGGATATAGAATTAATGGAAGAAAGTGGTGGAAAAGAGGAAACCCTACCACCGGGATTTCGATTTCATCCTACAGATGAAGAACTCATCACTTGCTATCTCATAAACAAGATATCAGATTCTAGTTTTACAGGCAAAGCAATAACTGATATAGATCTCAATAAATCTGAACCATGGGAGCTACCAGGGAAGGCAAAGATGGGAGAAAAGGAATGGTACTTTTTCAATATGAGAGATCGTAAATATCCAACGGGTGTGAGAACCAACCGAGCAACAAACACCGGATACTGGAAGACCACAGGAAAAGATCGAGAAATCTTTGACAGTGTTACATCGGAGTTGGTTGGAATGAAGAAGACTTTGGTCTTTTACAAAGGCAGAGCTCCTAGAGGAGAGAAAAGTAATTGGGTCATGCATGAATACCGTATTCACTCTAAATCCACCTTTAGAACAAACAAGCAGGATGAATGGGTGATCTGTAGGATTTTCAAGAAGAGTGGCAGTGGAAAAAAGTACCCTTGCAATTCCAGTTCCAACAATACAAGAGCAGGATTGAATCCTTATAGCATGCAGGAAATAGGTCCTAATAACATAAATCTGATATCGCTGCCACCACCAATGATGCAGTATCTGCATGAAGATTTTCCTTCTGCTCCTCGTAATTTCCTTTACGGACGGAATCAGCATAATAATAATTACATCAACTGTAATTCTACTGCACCAACGATGCAATATTCCCAGTTGAACTACCCTGCATTTTCAGCAACAGGAGGAGAAGGATTCAGCATTTCAGGGCTTAACTTGAACCTTGGATCGGGCGGAGGAGGAGCTGCCATTACAACACAAACCACTTTGCGGCCAATGCAACATTCCCCACATTTTGCTCATGCAACAATGAATATGGGTGCAGACAATGATTATGTTGATGCAGATCAGAATATTATTAATAATATTGGAGTACTAGAAACCATGAGCAACGGCAATAATAACTCAAATGGCAATAGGTACATGGGAATGGAGAATTGCATGGGTCTAGATACTTACTGGCCTAATTCCTACTAA
Protein sequence

>Msa1348540

MEKERTRDIELMEESGGKEETLPPGFRFHPTDEELITCYLINKISDSSFTGKAITDIDLNKSEPWELPGKAKMGEKEWYFFNMRDRKYPTGVRTNRATNTGYWKTTGKDREIFDSVTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSTFRTNKQDEWVICRIFKKSGSGKKYPCNSSSNNTRAGLNPYSMQEIGPNNINLISLPPPMMQYLHEDFPSAPRNFLYGRNQHNNNYINCNSTAPTMQYSQLNYPAFSATGGEGFSISGLNLNLGSGGGGAAITTQTTLRPMQHSPHFAHATMNMGADNDYVDADQNIINNIGVLETMSNGNNNSNGNRYMGMENCMGLDTYWPNSY*