AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0383480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0383480 MtrunA17_Chr3g0139331 90.341 352 24 6 12 359 1 346 0.0 595
Msa0383480 MtrunA17_Chr1g0147421 60.054 368 124 12 1 359 8 361 1.05e-133 385
Msa0383480 MtrunA17_Chr6g0484441 70.455 176 39 3 19 184 2 174 1.17e-84 259
Msa0383480 MtrunA17_Chr2g0316971 71.338 157 42 1 22 175 23 179 6.79e-81 251
Msa0383480 MtrunA17_Chr4g0060931 64.740 173 56 2 8 177 3 173 3.79e-78 244
Msa0383480 MtrunA17_Chr3g0091921 70.625 160 42 3 21 177 15 172 2.49e-76 237
Msa0383480 MtrunA17_Chr6g0453451 62.778 180 56 5 1 177 5 176 3.71e-71 224
Msa0383480 MtrunA17_Chr7g0253011 54.167 216 77 7 17 221 10 214 6.82e-71 226
Msa0383480 MtrunA17_Chr6g0461661 54.922 193 76 2 22 211 18 202 2.30e-69 222
Msa0383480 MtrunA17_Chr7g0217721 52.404 208 73 4 25 216 22 219 4.47e-67 215
Msa0383480 MtrunA17_Chr3g0144271 56.497 177 68 3 10 183 11 181 4.73e-64 209
Msa0383480 MtrunA17_Chr7g0263931 45.662 219 106 3 12 225 1 211 1.49e-60 197
Msa0383480 MtrunA17_Chr7g0217711 68.217 129 39 1 25 153 22 148 1.09e-59 190
Msa0383480 MtrunA17_Chr1g0183741 54.967 151 65 1 21 171 9 156 8.39e-59 191
Msa0383480 MtrunA17_Chr2g0312321 58.599 157 55 5 19 171 8 158 2.67e-58 191
Msa0383480 MtrunA17_Chr7g0261411 40.794 277 139 6 21 284 9 273 3.18e-58 190
Msa0383480 MtrunA17_Chr8g0359921 53.757 173 74 3 21 189 13 183 1.09e-57 190
Msa0383480 MtrunA17_Chr2g0309331 50.602 166 77 3 16 178 4 167 2.82e-57 189
Msa0383480 MtrunA17_Chr2g0318101 49.425 174 76 2 15 176 8 181 2.93e-57 190
Msa0383480 MtrunA17_Chr4g0042561 51.765 170 73 3 12 176 1 166 5.46e-57 186
Msa0383480 MtrunA17_Chr3g0124761 52.023 173 76 2 17 185 2 171 9.20e-57 186
Msa0383480 MtrunA17_Chr5g0417791 52.121 165 72 2 22 181 3 165 9.23e-57 186
Msa0383480 MtrunA17_Chr4g0056541 41.841 239 107 6 22 257 7 216 2.25e-56 187
Msa0383480 MtrunA17_Chr2g0318081 55.063 158 68 2 21 177 15 170 2.96e-56 187
Msa0383480 MtrunA17_Chr5g0405211 53.205 156 67 3 19 171 5 157 4.26e-56 187
Msa0383480 MtrunA17_Chr4g0017921 56.209 153 60 3 22 171 8 156 5.49e-56 186
Msa0383480 MtrunA17_Chr4g0018391 54.248 153 64 3 22 171 7 156 7.35e-56 186
Msa0383480 MtrunA17_Chr7g0252971 50.296 169 72 2 16 172 2 170 1.92e-55 184
Msa0383480 MtrunA17_Chr5g0398971 52.941 153 68 2 22 171 7 158 2.98e-55 184
Msa0383480 MtrunA17_Chr4g0047841 50.282 177 64 3 22 174 15 191 2.50e-54 182
Msa0383480 MtrunA17_Chr2g0326361 52.174 161 72 1 21 176 13 173 3.27e-54 181
Msa0383480 MtrunA17_Chr6g0481091 55.484 155 64 3 22 173 6 158 3.45e-54 178
Msa0383480 MtrunA17_Chr8g0346001 49.711 173 72 3 12 171 5 175 4.50e-54 184
Msa0383480 MtrunA17_Chr7g0214071 48.649 185 81 4 19 200 12 185 1.00e-53 177
Msa0383480 MtrunA17_Chr1g0200561 43.204 206 100 4 19 210 16 218 2.62e-53 179
Msa0383480 MtrunA17_Chr2g0309891 55.414 157 62 4 21 172 5 158 7.03e-53 178
Msa0383480 MtrunA17_Chr3g0109821 55.769 156 63 3 21 172 5 158 1.30e-52 184
Msa0383480 MtrunA17_Chr8g0384721 51.235 162 71 2 22 178 7 165 1.62e-52 175
Msa0383480 MtrunA17_Chr5g0433781 54.839 155 65 3 21 172 5 157 3.17e-52 183
Msa0383480 MtrunA17_Chr8g0372121 40.367 218 114 6 19 233 3 207 3.58e-52 175
Msa0383480 MtrunA17_Chr3g0130731 49.390 164 76 2 19 178 4 164 4.24e-51 172
Msa0383480 MtrunA17_Chr3g0092671 45.957 235 100 8 24 248 7 224 4.88e-51 178
Msa0383480 MtrunA17_Chr8g0361731 47.159 176 80 2 12 174 1 176 5.39e-50 172
Msa0383480 MtrunA17_Chr1g0197361 49.223 193 81 6 24 211 10 190 1.56e-49 175
Msa0383480 MtrunA17_Chr6g0453131 48.023 177 77 3 10 174 3 176 6.36e-49 169
Msa0383480 MtrunA17_Chr5g0417001 46.893 177 78 3 12 174 1 175 3.61e-48 167
Msa0383480 MtrunA17_Chr5g0400461 40.948 232 111 6 21 228 5 234 1.01e-47 164
Msa0383480 MtrunA17_Chr5g0428991 42.041 245 130 8 22 258 25 265 3.22e-47 169
Msa0383480 MtrunA17_Chr3g0128151 55.844 154 63 3 21 171 21 172 4.22e-47 168
Msa0383480 MtrunA17_Chr3g0130101 49.045 157 75 3 24 177 9 163 1.46e-45 159
Msa0383480 MtrunA17_Chr4g0076731 48.077 156 79 2 18 173 50 203 3.20e-45 160
Msa0383480 MtrunA17_Chr3g0128111 54.000 150 64 3 25 171 45 192 9.13e-45 154
Msa0383480 MtrunA17_Chr5g0442771 41.081 185 98 2 18 191 14 198 1.18e-44 155
Msa0383480 MtrunA17_Chr4g0054791 46.199 171 78 4 21 182 5 170 9.78e-44 153
Msa0383480 MtrunA17_Chr1g0197351 47.561 164 75 3 21 175 41 202 1.28e-43 157
Msa0383480 MtrunA17_Chr1g0201021 49.045 157 75 3 24 177 21 175 3.20e-42 154
Msa0383480 MtrunA17_Chr8g0364791 45.283 159 82 3 22 177 6 162 3.76e-42 152
Msa0383480 MtrunA17_Chr4g0038751 45.283 159 82 2 19 176 12 166 1.11e-41 147
Msa0383480 MtrunA17_Chr3g0113001 63.063 111 35 2 71 177 14 122 2.28e-41 147
Msa0383480 MtrunA17_Chr8g0385991 40.351 171 94 2 22 186 14 182 8.86e-41 143
Msa0383480 MtrunA17_Chr2g0311651 43.503 177 83 4 17 177 17 192 1.79e-40 144
Msa0383480 MtrunA17_Chr8g0384201 43.396 159 85 3 22 177 6 162 5.65e-40 147
Msa0383480 MtrunA17_Chr2g0311661 41.398 186 93 4 8 177 6 191 1.64e-39 141
Msa0383480 MtrunA17_Chr3g0131911 42.593 162 82 3 22 174 14 173 2.06e-36 132
Msa0383480 MtrunA17_Chr8g0345671 49.333 150 68 6 22 168 11 155 5.30e-36 135
Msa0383480 MtrunA17_Chr4g0026141 40.237 169 91 5 19 178 2 169 8.59e-34 125
Msa0383480 MtrunA17_Chr8g0345691 44.667 150 75 5 22 168 12 156 2.06e-33 128
Msa0383480 MtrunA17_Chr3g0113031 60.784 102 29 3 83 177 1 98 4.07e-33 124
Msa0383480 MtrunA17_Chr4g0050701 36.842 171 88 3 22 180 11 173 2.48e-32 119
Msa0383480 MtrunA17_Chr2g0321631 41.975 162 83 6 23 174 5 165 2.73e-32 121
Msa0383480 MtrunA17_Chr2g0321741 35.882 170 89 4 41 198 11 172 1.36e-31 122
Msa0383480 MtrunA17_Chr8g0345711 42.466 146 78 4 19 161 9 151 1.81e-31 117
Msa0383480 MtrunA17_Chr7g0266701 36.257 171 96 6 20 178 2 171 2.11e-29 114
Msa0383480 MtrunA17_Chr8g0345701 43.750 144 61 5 21 147 6 146 4.87e-29 110
Msa0383480 MtrunA17_Chr8g0345731 40.132 152 84 5 22 168 24 173 3.59e-28 108
Msa0383480 MtrunA17_Chr8g0345721 36.585 164 66 4 21 147 29 191 3.00e-26 104
Msa0383480 MtrunA17_Chr7g0243371 51.948 77 37 0 75 151 17 93 6.02e-24 95.1
Msa0383480 MtrunA17_Chr8g0384351 40.000 150 69 5 22 171 10 138 1.03e-23 96.7
Msa0383480 MtrunA17_Chr8g0345741 40.336 119 67 3 33 148 2 119 1.10e-22 92.8
Msa0383480 MtrunA17_Chr3g0130321 36.735 196 93 9 17 192 2 186 1.19e-21 91.7
Msa0383480 MtrunA17_Chr7g0251661 34.559 136 83 5 16 149 4 135 1.43e-21 90.1
Msa0383480 MtrunA17_Chr7g0251651 33.803 142 85 6 10 149 9 143 1.38e-17 80.1
Msa0383480 MtrunA17_Chr7g0251671 30.147 136 89 4 16 149 4 135 1.09e-16 76.6
Msa0383480 MtrunA17_Chr3g0113011 61.224 49 19 0 22 70 19 67 1.51e-15 70.9
Msa0383480 MtrunA17_Chr3g0113041 60.000 45 18 0 26 70 23 67 3.30e-14 67.0
Msa0383480 MtrunA17_Chr4g0040541 30.303 165 92 6 22 169 48 206 1.83e-13 70.1
Msa0383480 MtrunA17_Chr2g0324961 32.919 161 83 7 9 149 34 189 2.43e-13 69.7
Msa0383480 MtrunA17_Chr2g0282871 30.769 182 97 8 8 169 38 210 5.57e-13 68.9
Msa0383480 MtrunA17_Chr8g0367761 29.381 194 112 8 8 182 53 240 1.26e-12 67.4
Msa0383480 MtrunA17_Chr7g0274971 29.167 168 106 7 28 187 11 173 2.74e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0383480 AT2G24430.2 48.580 352 131 6 13 357 7 315 2.27e-100 300
Msa0383480 AT2G24430.1 48.580 352 131 6 13 357 7 315 2.27e-100 300
Msa0383480 AT3G18400.1 72.956 159 41 1 19 177 2 158 1.84e-84 259
Msa0383480 AT5G53950.1 68.519 162 48 1 14 172 9 170 5.60e-80 249
Msa0383480 AT3G15170.1 68.987 158 46 1 19 173 17 174 6.29e-77 239
Msa0383480 AT5G61430.1 67.683 164 48 2 22 182 16 177 7.48e-77 240
Msa0383480 AT5G07680.2 65.854 164 51 2 22 182 3 164 3.70e-75 235
Msa0383480 AT5G07680.1 65.854 164 51 2 22 182 17 178 6.16e-75 235
Msa0383480 AT1G76420.1 46.360 261 126 3 10 258 7 265 7.84e-74 232
Msa0383480 AT5G39610.1 60.989 182 64 3 1 179 1 178 1.66e-73 230
Msa0383480 AT5G18270.2 56.650 203 75 5 16 211 14 210 1.38e-72 229
Msa0383480 AT5G18270.1 56.158 203 76 5 16 211 14 210 5.02e-72 228
Msa0383480 AT3G04060.1 46.931 277 118 9 16 281 12 270 1.22e-68 219
Msa0383480 AT3G29035.1 58.791 182 68 3 1 177 1 180 2.23e-66 213
Msa0383480 AT2G18060.3 47.150 193 89 4 21 210 8 190 2.29e-59 196
Msa0383480 AT2G18060.1 47.150 193 89 4 21 210 8 190 2.29e-59 196
Msa0383480 AT4G27410.2 55.346 159 66 3 21 177 13 168 6.95e-59 192
Msa0383480 AT3G12977.1 53.459 159 70 2 19 175 15 171 1.04e-58 191
Msa0383480 AT3G10500.1 58.537 164 63 3 17 177 4 165 2.49e-58 198
Msa0383480 AT1G33280.1 49.065 214 89 8 22 219 8 217 1.31e-57 189
Msa0383480 AT1G52890.1 53.254 169 76 2 21 188 13 179 3.83e-57 189
Msa0383480 AT3G15500.1 54.938 162 70 2 21 181 13 172 7.43e-57 188
Msa0383480 AT3G04070.2 52.326 172 67 3 21 179 9 178 7.57e-57 189
Msa0383480 AT1G12260.2 54.902 153 63 3 22 171 7 156 1.18e-56 188
Msa0383480 AT1G69490.1 53.374 163 69 2 19 176 6 166 1.18e-56 186
Msa0383480 AT1G12260.1 54.902 153 63 3 22 171 7 156 1.96e-56 189
Msa0383480 AT5G62380.2 51.111 180 76 4 22 198 7 177 2.88e-56 187
Msa0383480 AT5G62380.1 51.111 180 76 4 22 198 7 177 2.88e-56 187
Msa0383480 AT5G04410.1 56.707 164 66 3 17 177 4 165 3.27e-56 192
Msa0383480 AT4G36160.1 38.521 257 134 9 14 262 2 242 7.74e-56 187
Msa0383480 AT4G36160.3 38.521 257 134 9 14 262 2 242 7.74e-56 187
Msa0383480 AT4G10350.1 52.941 170 74 3 22 187 9 176 7.83e-56 186
Msa0383480 AT4G36160.2 38.521 257 134 9 14 262 6 246 9.21e-56 187
Msa0383480 AT4G28530.1 52.410 166 60 2 22 171 10 172 2.15e-55 185
Msa0383480 AT1G56010.2 50.867 173 76 4 10 175 5 175 2.26e-55 184
Msa0383480 AT1G01720.1 53.416 161 67 2 22 177 7 164 2.30e-55 183
Msa0383480 AT4G27410.3 50.568 176 65 4 21 177 13 185 2.38e-55 184
Msa0383480 AT1G62700.1 54.248 153 64 3 22 171 7 156 2.47e-55 186
Msa0383480 AT1G62700.2 54.248 153 64 3 22 171 7 156 2.47e-55 186
Msa0383480 AT3G17730.1 49.171 181 87 3 22 199 6 184 1.65e-54 179
Msa0383480 AT3G04070.1 48.404 188 66 4 21 179 9 194 6.60e-54 181
Msa0383480 AT5G08790.1 52.410 166 70 3 19 178 4 166 7.79e-54 179
Msa0383480 AT1G71930.2 50.000 156 72 3 19 171 6 158 1.83e-53 179
Msa0383480 AT1G71930.1 50.000 156 72 3 19 171 6 158 1.83e-53 179
Msa0383480 AT1G77450.1 47.541 183 84 3 17 195 5 179 2.14e-53 177
Msa0383480 AT1G61110.1 50.595 168 69 2 22 176 16 182 2.40e-53 179
Msa0383480 AT5G63790.2 53.012 166 69 3 19 178 57 219 3.15e-53 179
Msa0383480 AT1G79580.3 51.250 160 72 3 15 171 10 166 3.32e-53 180
Msa0383480 AT1G79580.5 51.250 160 72 3 15 171 10 166 3.32e-53 180
Msa0383480 AT1G79580.4 51.250 160 72 3 15 171 10 166 3.32e-53 180
Msa0383480 AT1G79580.2 51.250 160 72 3 15 171 10 166 3.32e-53 180
Msa0383480 AT1G79580.1 51.250 160 72 3 15 171 10 166 3.32e-53 180
Msa0383480 AT5G63790.1 53.012 166 69 3 19 178 47 209 3.36e-53 178
Msa0383480 AT1G65910.1 53.750 160 69 3 21 177 5 162 8.17e-53 185
Msa0383480 AT5G66300.1 51.299 154 70 2 21 171 11 162 1.06e-52 176
Msa0383480 AT2G46770.1 48.588 177 72 4 12 171 6 180 1.17e-52 178
Msa0383480 AT5G17260.1 56.051 157 59 4 21 171 5 157 2.74e-52 180
Msa0383480 AT3G03200.1 55.414 157 60 4 21 171 5 157 4.71e-52 180
Msa0383480 AT3G61910.1 44.615 195 89 4 12 189 1 193 1.71e-51 174
Msa0383480 AT3G15510.1 49.080 163 71 2 26 176 21 183 1.80e-51 175
Msa0383480 AT5G13180.1 50.000 156 75 1 22 177 14 166 4.99e-51 171
Msa0383480 AT1G33060.1 56.129 155 63 3 20 171 22 174 1.61e-50 179
Msa0383480 AT1G33060.2 56.129 155 63 3 20 171 22 174 1.68e-50 179
Msa0383480 AT3G10480.1 52.830 159 69 3 21 175 26 182 2.22e-50 174
Msa0383480 AT4G35580.1 56.129 155 63 3 20 171 7 159 6.52e-50 175
Msa0383480 AT4G35580.3 56.129 155 63 3 20 171 7 159 7.37e-50 175
Msa0383480 AT4G35580.2 56.129 155 63 3 20 171 7 159 7.50e-50 175
Msa0383480 AT3G10490.1 51.572 159 71 3 21 175 26 182 2.58e-49 166
Msa0383480 AT5G46590.1 53.896 154 66 3 22 171 6 158 3.68e-49 167
Msa0383480 AT5G39820.1 41.837 196 86 3 1 174 5 194 1.67e-48 167
Msa0383480 AT1G32770.1 43.750 176 83 3 19 180 13 186 2.76e-48 167
Msa0383480 AT4G17980.1 52.564 156 69 2 21 171 5 160 4.40e-48 163
Msa0383480 AT1G26870.1 48.193 166 76 2 19 174 13 178 5.08e-48 167
Msa0383480 AT2G02450.2 50.303 165 79 3 24 188 53 214 5.40e-48 167
Msa0383480 AT5G61430.2 65.217 115 35 2 71 182 2 114 5.83e-48 163
Msa0383480 AT2G02450.1 50.303 165 79 3 24 188 53 214 5.85e-48 166
Msa0383480 AT3G10490.2 51.572 159 71 3 21 175 26 182 6.08e-48 168
Msa0383480 AT3G10480.2 52.830 159 68 4 21 175 26 181 6.25e-48 168
Msa0383480 AT4G17980.2 52.564 156 69 2 21 171 5 160 9.94e-48 163
Msa0383480 AT5G46590.2 57.778 135 54 2 22 154 6 139 1.25e-47 163
Msa0383480 AT1G54330.1 51.948 154 66 4 21 171 5 153 2.01e-47 163
Msa0383480 AT2G33480.1 50.641 156 67 4 22 174 15 163 7.34e-47 160
Msa0383480 AT1G52880.1 52.500 160 65 4 26 174 21 180 2.29e-46 160
Msa0383480 AT2G33480.2 50.000 156 66 4 22 174 15 161 6.14e-46 158
Msa0383480 AT3G49530.2 52.258 155 70 3 20 171 11 164 1.57e-45 160
Msa0383480 AT5G09330.5 49.057 159 76 3 22 177 6 162 2.47e-45 162
Msa0383480 AT5G09330.2 49.057 159 76 3 22 177 6 162 2.47e-45 162
Msa0383480 AT5G09330.4 49.057 159 76 3 22 177 6 162 2.47e-45 162
Msa0383480 AT5G09330.3 49.057 159 76 3 22 177 6 162 2.47e-45 162
Msa0383480 AT5G09330.1 49.057 159 76 3 22 177 6 162 2.47e-45 162
Msa0383480 AT2G43000.1 46.452 155 79 2 24 176 20 172 3.57e-45 156
Msa0383480 AT3G49530.1 52.258 155 70 3 20 171 11 164 4.58e-45 161
Msa0383480 AT1G34180.3 49.682 157 74 3 24 177 18 172 9.80e-45 159
Msa0383480 AT3G10480.3 43.750 192 69 3 21 175 26 215 1.18e-44 161
Msa0383480 AT5G64060.1 45.625 160 82 3 22 178 6 163 1.60e-44 157
Msa0383480 AT5G24590.2 44.792 192 94 5 21 201 12 202 1.70e-44 159
Msa0383480 AT1G34190.1 50.000 158 72 4 24 177 18 172 3.91e-44 160
Msa0383480 AT1G34180.1 49.682 157 74 3 24 177 18 172 6.37e-44 159
Msa0383480 AT1G32870.2 51.149 174 72 5 9 177 1 166 1.12e-43 158
Msa0383480 AT1G32870.1 51.149 174 72 5 9 177 1 166 1.35e-43 158
Msa0383480 AT1G32870.3 50.556 180 73 6 6 177 31 202 2.64e-43 158
Msa0383480 AT1G34180.4 46.154 169 74 3 24 177 18 184 8.64e-43 154
Msa0383480 AT1G34180.2 46.154 169 74 3 24 177 18 184 6.02e-42 154
Msa0383480 AT2G17040.1 44.805 154 80 2 24 176 8 157 1.08e-41 147
Msa0383480 AT2G27300.1 47.682 151 70 3 21 170 13 155 3.25e-41 147
Msa0383480 AT1G32510.1 47.799 159 74 3 22 171 6 164 1.18e-40 144
Msa0383480 AT5G22290.1 41.243 177 92 4 21 192 20 189 7.25e-40 144
Msa0383480 AT3G12910.1 41.436 181 89 5 14 178 13 192 8.78e-39 140
Msa0383480 AT1G56010.1 55.963 109 42 2 71 175 2 108 4.88e-37 134
Msa0383480 AT3G12977.2 56.075 107 43 2 71 175 14 118 4.95e-37 133
Msa0383480 AT4G28530.2 52.344 128 45 1 22 133 10 137 3.48e-36 134
Msa0383480 AT3G44290.2 43.836 146 73 3 24 168 16 153 7.14e-35 128
Msa0383480 AT3G44290.1 43.836 146 73 3 24 168 16 153 4.41e-34 129
Msa0383480 AT4G10350.2 50.400 125 56 3 67 187 7 129 6.30e-34 127
Msa0383480 AT5G04395.1 42.069 145 70 2 19 149 25 169 1.75e-31 117
Msa0383480 AT5G64530.1 32.353 204 104 5 22 210 3 187 1.71e-28 110
Msa0383480 AT3G44350.2 39.157 166 93 5 20 178 3 167 1.02e-27 109
Msa0383480 AT2G33480.3 51.456 103 43 3 75 174 8 106 3.26e-27 107
Msa0383480 AT5G64530.2 41.406 128 63 2 22 149 3 118 2.05e-26 103
Msa0383480 AT4G01550.1 40.645 155 84 4 25 175 7 157 2.42e-26 109
Msa0383480 AT1G02230.1 39.286 168 86 9 23 184 4 161 7.03e-26 107
Msa0383480 AT5G22380.1 35.976 164 93 5 25 178 8 169 7.21e-26 104
Msa0383480 AT4G01520.1 35.196 179 103 7 23 192 5 179 3.87e-25 103
Msa0383480 AT2G18060.2 42.342 111 54 3 100 210 2 102 6.45e-25 102
Msa0383480 AT3G04420.2 36.601 153 87 4 23 171 4 150 1.15e-24 102
Msa0383480 AT3G04420.1 36.601 153 87 4 23 171 4 150 2.35e-24 102
Msa0383480 AT4G01540.4 37.584 149 84 5 25 168 7 151 3.16e-24 102
Msa0383480 AT4G01540.2 37.584 149 84 5 25 168 7 151 5.63e-24 102
Msa0383480 AT4G01540.3 37.584 149 84 5 25 168 7 151 5.86e-24 102
Msa0383480 AT4G01540.1 37.584 149 84 5 25 168 7 151 8.33e-24 102
Msa0383480 AT3G10490.4 57.831 83 31 2 95 175 2 82 4.60e-23 99.0
Msa0383480 AT3G10490.3 57.831 83 31 2 95 175 2 82 4.60e-23 99.0
Msa0383480 AT3G44350.1 39.161 143 81 4 20 157 3 144 7.49e-23 94.0
Msa0383480 AT1G02250.1 36.184 152 84 6 23 168 4 148 2.85e-22 97.1
Msa0383480 AT2G43000.2 42.708 96 51 2 83 176 1 94 1.66e-20 88.6
Msa0383480 AT1G02220.1 37.984 129 71 4 23 147 4 127 7.74e-20 90.5
Msa0383480 AT1G01010.1 37.013 154 81 6 25 168 6 153 5.64e-19 88.2
Msa0383480 AT5G14000.1 33.974 156 93 5 22 174 15 163 1.38e-17 80.9
Msa0383480 AT5G22290.2 40.625 96 46 3 101 192 2 90 1.63e-16 78.6
Msa0383480 AT5G14000.2 36.719 128 75 3 22 147 15 138 1.94e-16 76.3
Msa0383480 AT3G04430.1 34.848 132 74 3 28 148 6 136 7.61e-16 75.9
Msa0383480 AT3G56530.1 30.323 155 102 4 18 169 48 199 5.44e-15 75.5
Msa0383480 AT4G28500.1 31.928 166 88 8 22 169 59 217 1.39e-13 71.2
Msa0383480 AT5G50820.1 32.215 149 67 6 17 151 12 140 1.42e-13 69.3
Msa0383480 AT5G56620.2 31.285 179 82 9 22 169 43 211 2.51e-12 68.2
Msa0383480 AT5G56620.3 31.285 179 82 9 22 169 43 211 2.63e-12 68.2
Msa0383480 AT5G56620.1 31.285 179 82 9 22 169 43 211 3.29e-12 67.4

Find 99 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGAAGGATTCAGCATTTC+AGG 0.147743 3_1:-86403390 Msa0383480:CDS
CAGAATATTATTAATAATAT+TGG 0.210903 3_1:-86403228 Msa0383480:CDS
TGCTCATGCAACAATGAATA+TGG 0.229206 3_1:-86403280 Msa0383480:CDS
GATATCAGATTTATGTTATT+AGG 0.247457 3_1:+86403579 None:intergenic
TAATTAATTTAGTAGGAATT+AGG 0.248881 3_1:+86403114 None:intergenic
CTAGAGGAGAGAAAAGTAAT+TGG 0.268976 3_1:-86406354 Msa0383480:CDS
CCTATTTCCTGCATGCTATA+AGG 0.298476 3_1:+86403603 None:intergenic
GACCAGGGATATAGAATTAA+TGG 0.299064 3_1:-86406918 Msa0383480:CDS
CAATCCTGCTCTTGTATTGT+TGG 0.299835 3_1:+86403629 None:intergenic
GCTCCTCGTAATTTCCTTTA+CGG 0.322347 3_1:-86403510 Msa0383480:CDS
CTAACGATAATTAATTTAGT+AGG 0.351551 3_1:+86403107 None:intergenic
GCATGGGTCTAGATACTTAC+TGG 0.357689 3_1:-86403137 Msa0383480:CDS
AAAATGCAGGGTAGTTCAAC+TGG 0.366337 3_1:+86403424 None:intergenic
TGCTCTTGTATTGTTGGAAC+TGG 0.374259 3_1:+86403635 None:intergenic
GAGCAACAAACACCGGATAC+TGG 0.377955 3_1:-86406471 Msa0383480:CDS
TCCTGTGGTCTTCCAGTATC+CGG 0.379446 3_1:+86406459 None:intergenic
CCTTATAGCATGCAGGAAAT+AGG 0.388121 3_1:-86403603 Msa0383480:CDS
TTCCATTAATTCTATATCCC+TGG 0.403615 3_1:+86406916 None:intergenic
TCAGGGCTTAACTTGAACCT+TGG 0.407322 3_1:-86403372 Msa0383480:CDS
CTCAAATGGCAATAGGTACA+TGG 0.423108 3_1:-86403172 Msa0383480:CDS
AGTATCCGGTGTTTGTTGCT+CGG 0.427325 3_1:+86406473 None:intergenic
ATAATAACTCAAATGGCAAT+AGG 0.431575 3_1:-86403179 Msa0383480:CDS
TCCGGTGTTTGTTGCTCGGT+TGG 0.434798 3_1:+86406477 None:intergenic
ATTCACTCTAAATCCACCTT+TGG 0.435918 3_1:-86406313 Msa0383480:CDS
TCATGCAGATACTGCATCAT+TGG 0.442369 3_1:+86403546 None:intergenic
AACCTTGGATCGGGCGGAGG+AGG 0.448875 3_1:-86403357 Msa0383480:CDS
CTCCTCCTCCGCCCGATCCA+AGG 0.458521 3_1:+86403355 None:intergenic
CCTCCTGTTGCTGAAAATGC+AGG 0.464674 3_1:+86403411 None:intergenic
TTACAACACAAACCACTTTG+CGG 0.465955 3_1:-86403326 Msa0383480:CDS
AGATGGAGAAGGAGAGGACC+AGG 0.471304 3_1:-86406934 Msa0383480:CDS
GAAGGCAAAGATGGGAGAAA+AGG 0.475981 3_1:-86406551 Msa0383480:CDS
CAAAGTGGTTTGTGTTGTAA+TGG 0.484732 3_1:+86403329 None:intergenic
AACGGCAATAATAACTCAAA+TGG 0.484848 3_1:-86403186 Msa0383480:CDS
GGTTGGAATGAAGAAGACTT+TGG 0.485009 3_1:-86406398 Msa0383480:CDS
TACATACCTGGTAGCTCCCA+TGG 0.488949 3_1:+86406743 None:intergenic
GTTATTATTGCCGTTGCTCA+TGG 0.489391 3_1:+86403194 None:intergenic
ACATACCTTGTTTGTTCCAA+AGG 0.491012 3_1:+86406297 None:intergenic
TAGAGGAGAGAAAAGTAATT+GGG 0.496077 3_1:-86406353 Msa0383480:CDS
CTTAACTTGAACCTTGGATC+GGG 0.501563 3_1:-86403366 Msa0383480:CDS
AACTGGGTATATTGCATCGT+TGG 0.502169 3_1:+86403441 None:intergenic
AGGTGGATTTAGAGTGAATA+CGG 0.504474 3_1:+86406317 None:intergenic
AGTTCCAACAATACAAGAGC+AGG 0.508263 3_1:-86403633 Msa0383480:CDS
TGACAGTGTTACATCGGAGT+TGG 0.510341 3_1:-86406419 Msa0383480:CDS
GCTCATGCAACAATGAATAT+GGG 0.513318 3_1:-86403279 Msa0383480:CDS
AGAGATCGTAAATATCCAAC+GGG 0.520918 3_1:-86406508 Msa0383480:CDS
CGGTTGGTTCTCACACCCGT+TGG 0.529136 3_1:+86406493 None:intergenic
GGAAGAAAGTGGTGGAAAAG+AGG 0.529217 3_1:-86406897 Msa0383480:CDS
TATGCTGATTCCGTCCGTAA+AGG 0.529302 3_1:+86403496 None:intergenic
TACCTTGTTTGTTCCAAAGG+TGG 0.532540 3_1:+86406300 None:intergenic
TGGCAATAGGTACATGGGAA+TGG 0.533447 3_1:-86403166 Msa0383480:CDS
GCTTAACTTGAACCTTGGAT+CGG 0.537039 3_1:-86403367 Msa0383480:CDS
CATGGGAATGGAGAATTGCA+TGG 0.544759 3_1:-86403154 Msa0383480:CDS
GACATGTGCAGCAGGATGAA+TGG 0.545037 3_1:-86403713 Msa0383480:intron
TTGAACCTTGGATCGGGCGG+AGG 0.550086 3_1:-86403360 Msa0383480:CDS
CTCGTAATTTCCTTTACGGA+CGG 0.550106 3_1:-86403506 Msa0383480:CDS
AAATCGAAATCCCGGTGGTA+GGG 0.551569 3_1:+86406871 None:intergenic
GAGAAGGATTCAGCATTTCA+GGG 0.553123 3_1:-86403389 Msa0383480:CDS
ACATGTGCAGCAGGATGAAT+GGG 0.554242 3_1:-86403712 Msa0383480:intron
ATCTCAATAAATCTGAACCA+TGG 0.554434 3_1:-86406760 Msa0383480:CDS
AGGATGAATGGGTGATCTGT+AGG 0.556960 3_1:-86403701 Msa0383480:CDS
AGTGTTACATCGGAGTTGGT+TGG 0.560551 3_1:-86406415 Msa0383480:CDS
AGGAAATTACGAGGAGCAGA+AGG 0.563910 3_1:+86403516 None:intergenic
ATTGAATCCTTATAGCATGC+AGG 0.564559 3_1:-86403610 Msa0383480:CDS
GAAATCGAAATCCCGGTGGT+AGG 0.566387 3_1:+86406870 None:intergenic
TCTCAATAAATCTGAACCAT+GGG 0.566445 3_1:-86406759 Msa0383480:CDS
TGCAGATACTGCATCATTGG+TGG 0.568804 3_1:+86403549 None:intergenic
ACCAACCGAGCAACAAACAC+CGG 0.569937 3_1:-86406478 Msa0383480:CDS
ATAGAATTAATGGAAGAAAG+TGG 0.574179 3_1:-86406908 Msa0383480:CDS
GTGATGAGTTCTTCATCTGT+AGG 0.581162 3_1:+86406845 None:intergenic
AACTTGAACCTTGGATCGGG+CGG 0.589134 3_1:-86403363 Msa0383480:CDS
GTAGGATGAAATCGAAATCC+CGG 0.589979 3_1:+86406863 None:intergenic
TCTGAACCATGGGAGCTACC+AGG 0.593672 3_1:-86406749 Msa0383480:intron
TGTTGGAACTGGAATTGCAA+GGG 0.597117 3_1:+86403646 None:intergenic
AAAAGAGGAAACCCTACCAC+CGG 0.597559 3_1:-86406882 Msa0383480:CDS
AAATGTGGGGAATGTTGCAT+TGG 0.600516 3_1:+86403303 None:intergenic
TTGTTGCATGAGCAAAATGT+GGG 0.601779 3_1:+86403289 None:intergenic
ACCGGATACTGGAAGACCAC+AGG 0.606858 3_1:-86406460 Msa0383480:CDS
TCAAATGGCAATAGGTACAT+GGG 0.607158 3_1:-86403171 Msa0383480:CDS
CTCCTGTTGCTGAAAATGCA+GGG 0.608809 3_1:+86403412 None:intergenic
GAGAGATCGTAAATATCCAA+CGG 0.612811 3_1:-86406509 Msa0383480:CDS
ATGTTGCATTGGCCGCAAAG+TGG 0.617388 3_1:+86403314 None:intergenic
CAAAGATGGGAGAAAAGGAA+TGG 0.621507 3_1:-86406546 Msa0383480:CDS
ATGGGAATGGAGAATTGCAT+GGG 0.622042 3_1:-86403153 Msa0383480:CDS
AATCTTTGACAGTGTTACAT+CGG 0.624512 3_1:-86406425 Msa0383480:CDS
ATTGTTGCATGAGCAAAATG+TGG 0.631252 3_1:+86403288 None:intergenic
ATCCACCTTTGGAACAAACA+AGG 0.636856 3_1:-86406302 Msa0383480:intron
GAATTAATGGAAGAAAGTGG+TGG 0.647512 3_1:-86406905 Msa0383480:CDS
ACGTACAGATGGAGAAGGAG+AGG 0.648950 3_1:-86406940 None:intergenic
GATGGAGAAGGAGAGGACCA+GGG 0.657515 3_1:-86406933 Msa0383480:CDS
AAAGAGGAAACCCTACCACC+GGG 0.660538 3_1:-86406881 Msa0383480:CDS
GTACTAGAAACCATGAGCAA+CGG 0.660684 3_1:-86403204 Msa0383480:CDS
AGATACTGCATCATTGGTGG+TGG 0.660857 3_1:+86403552 None:intergenic
TACAAAGGCAGAGCTCCTAG+AGG 0.666043 3_1:-86406370 Msa0383480:CDS
GGTATACGTACAGATGGAGA+AGG 0.677565 3_1:-86406945 None:intergenic
AAATGCAGGGTAGTTCAACT+GGG 0.683279 3_1:+86403425 None:intergenic
CGTCCGTAAAGGAAATTACG+AGG 0.696088 3_1:+86403507 None:intergenic
TTGTTGGAACTGGAATTGCA+AGG 0.698502 3_1:+86403645 None:intergenic
GGATGAAATCGAAATCCCGG+TGG 0.770141 3_1:+86406866 None:intergenic
TGTTGCATGAGCAAAATGTG+GGG 0.786023 3_1:+86403290 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATAATATATTAAATTT+GGG + chr3_1:86405287-86405306 None:intergenic 0.0%
!! TTATAATAATATATTAAATT+TGG + chr3_1:86405288-86405307 None:intergenic 0.0%
!! TTAATATTAAAACAATTAGT+GGG + chr3_1:86404263-86404282 None:intergenic 10.0%
!! TTTAATATTAAAACAATTAG+TGG + chr3_1:86404264-86404283 None:intergenic 10.0%
!! AAAAAATACTAATTATGTAA+CGG - chr3_1:86404494-86404513 Msa0383480:intron 10.0%
!! TAATTATTAATTTAATGCTT+TGG + chr3_1:86404980-86404999 None:intergenic 10.0%
!! AAAAAAAAAAAACTCAAAAT+GGG + chr3_1:86405739-86405758 None:intergenic 10.0%
!! AAAAAAAAAAAAACTCAAAA+TGG + chr3_1:86405740-86405759 None:intergenic 10.0%
!! TTAGTTTAATACTATAAAAT+TGG + chr3_1:86405913-86405932 None:intergenic 10.0%
!! CAGAATATTATTAATAATAT+TGG - chr3_1:86406826-86406845 Msa0383480:CDS 10.0%
!! AACAATTAACAACAAAAAAA+AGG - chr3_1:86403391-86403410 Msa0383480:CDS 15.0%
!! GTCTAAAAAATATTTATAAG+TGG - chr3_1:86404032-86404051 Msa0383480:intron 15.0%
!! CATGTTCAAATATTAAAAAT+GGG - chr3_1:86404099-86404118 Msa0383480:intron 15.0%
!!! AAAATTTAGTTTTTTCATAG+CGG + chr3_1:86404125-86404144 None:intergenic 15.0%
!! TGATAAACTAATACTAATAT+CGG - chr3_1:86404417-86404436 Msa0383480:intron 15.0%
!!! TTAAAATATATATAACTTGC+CGG + chr3_1:86405495-86405514 None:intergenic 15.0%
!!! GTTCTAAAGTTAATTTTTAT+GGG + chr3_1:86405630-86405649 None:intergenic 15.0%
!!! TGTTCTAAAGTTAATTTTTA+TGG + chr3_1:86405631-86405650 None:intergenic 15.0%
!!! TTTTTTTTTTAGCTTATCAT+TGG - chr3_1:86405754-86405773 Msa0383480:intron 15.0%
!! CAATTAATACGACTATAATA+AGG + chr3_1:86403908-86403927 None:intergenic 20.0%
!! TATGTATTTATAACTATCCT+AGG - chr3_1:86403977-86403996 Msa0383480:intron 20.0%
!!! CCATTTTTAATATTTGAACA+TGG + chr3_1:86404101-86404120 None:intergenic 20.0%
!! CCATGTTCAAATATTAAAAA+TGG - chr3_1:86404098-86404117 Msa0383480:intron 20.0%
!! TAAGTAAAACTAAGTTTGTA+TGG - chr3_1:86404204-86404223 Msa0383480:intron 20.0%
!! AAGTAAAACTAAGTTTGTAT+GGG - chr3_1:86404205-86404224 Msa0383480:intron 20.0%
!!! GATGATTCTTTTTAAGTTTT+TGG + chr3_1:86404320-86404339 None:intergenic 20.0%
!! AAAATGAGTCTTAAGTATAT+TGG - chr3_1:86404354-86404373 Msa0383480:intron 20.0%
!!! GATTTAATTTGCATTGTTAA+TGG - chr3_1:86404516-86404535 Msa0383480:intron 20.0%
!!! GTAATTGAGACTTTTATATT+TGG - chr3_1:86404637-86404656 Msa0383480:intron 20.0%
!! ACTATTTATTTCAATTTGTG+AGG - chr3_1:86405246-86405265 Msa0383480:intron 20.0%
!! AAGAAAAAGAAAAATTTGTG+AGG - chr3_1:86406051-86406070 Msa0383480:intron 20.0%
!! AGAAAAAGAAAAATTTGTGA+GGG - chr3_1:86406052-86406071 Msa0383480:intron 20.0%
!! TAATCTAACATGGTAAAAAT+TGG + chr3_1:86406139-86406158 None:intergenic 20.0%
!!! TCATTTTCTTTGCAAAATAA+AGG + chr3_1:86406304-86406323 None:intergenic 20.0%
!! GATATCAGATTTATGTTATT+AGG + chr3_1:86406478-86406497 None:intergenic 20.0%
! ATAGAATTAATGGAAGAAAG+TGG - chr3_1:86403146-86403165 Msa0383480:CDS 25.0%
!!! ATATCAGATTCTAGTTTTAC+AGG - chr3_1:86403251-86403270 Msa0383480:CDS 25.0%
! AGGTATGTAGTATAATATAC+AGG - chr3_1:86403772-86403791 Msa0383480:intron 25.0%
! AGGGTATGAAATTAAGTATA+TGG - chr3_1:86404010-86404029 Msa0383480:intron 25.0%
! TAAAAAATCGATAGACATCT+TGG + chr3_1:86404741-86404760 None:intergenic 25.0%
! CTATTGAATCCAAGATTTAA+TGG - chr3_1:86404912-86404931 Msa0383480:intron 25.0%
! TAGAATTTGCCATTAAATCT+TGG + chr3_1:86404924-86404943 None:intergenic 25.0%
!!! TTTTATTTCAACAACGCTTT+TGG + chr3_1:86405074-86405093 None:intergenic 25.0%
! ATTAAATTTGGGAACTTCTA+CGG + chr3_1:86405276-86405295 None:intergenic 25.0%
!! ACAATTTTTGCTTTATGGAT+TGG + chr3_1:86405518-86405537 None:intergenic 25.0%
! AATCCATAAAGCAAAAATTG+TGG - chr3_1:86405517-86405536 Msa0383480:intron 25.0%
! ATCCATAAAGCAAAAATTGT+GGG - chr3_1:86405518-86405537 Msa0383480:intron 25.0%
! TGTCACATATGTCTTAAAAT+TGG + chr3_1:86405707-86405726 None:intergenic 25.0%
! TAAACTTGATCTTGCTTAAA+TGG + chr3_1:86405829-86405848 None:intergenic 25.0%
!! TTGAAACGTCTAATTTTCAT+CGG - chr3_1:86405953-86405972 Msa0383480:intron 25.0%
! TCATATAAGGTTGCTTAAAT+TGG + chr3_1:86406017-86406036 None:intergenic 25.0%
! ACATTTCATCTAATCTAACA+TGG + chr3_1:86406149-86406168 None:intergenic 25.0%
! TGTTAAGAAATCGAGTTAAA+AGG + chr3_1:86406204-86406223 None:intergenic 25.0%
! ATAATAACTCAAATGGCAAT+AGG - chr3_1:86406875-86406894 Msa0383480:CDS 25.0%
TTCCATTAATTCTATATCCC+TGG + chr3_1:86403141-86403160 None:intergenic 30.0%
ATCTCAATAAATCTGAACCA+TGG - chr3_1:86403294-86403313 Msa0383480:CDS 30.0%
TCTCAATAAATCTGAACCAT+GGG - chr3_1:86403295-86403314 Msa0383480:CDS 30.0%
! AGTTCGTGCATGAATATTTT+AGG - chr3_1:86403480-86403499 Msa0383480:CDS 30.0%
! GTTCGTGCATGAATATTTTA+GGG - chr3_1:86403481-86403500 Msa0383480:CDS 30.0%
AATCTTTGACAGTGTTACAT+CGG - chr3_1:86403629-86403648 Msa0383480:CDS 30.0%
!! AAGACTTTGGTCTTTTACAA+AGG - chr3_1:86403669-86403688 Msa0383480:CDS 30.0%
TAGAGGAGAGAAAAGTAATT+GGG - chr3_1:86403701-86403720 Msa0383480:CDS 30.0%
TCCTTAGCTTACTAATAATG+TGG - chr3_1:86403819-86403838 Msa0383480:intron 30.0%
TCCACATTATTAGTAAGCTA+AGG + chr3_1:86403823-86403842 None:intergenic 30.0%
AAAACTAAGTTTGTATGGGA+AGG - chr3_1:86404209-86404228 Msa0383480:intron 30.0%
CAATTACATACACAACTACT+AGG + chr3_1:86404624-86404643 None:intergenic 30.0%
TTCAAATTCACACAAATGCT+CGG - chr3_1:86404660-86404679 Msa0383480:intron 30.0%
!! ATATAGCACTCAAAAGTGTT+AGG + chr3_1:86404780-86404799 None:intergenic 30.0%
ACTTTACAATTCCACTTGTA+TGG + chr3_1:86404887-86404906 None:intergenic 30.0%
!! ACCAAATATTTTGAGCGTAT+CGG - chr3_1:86404950-86404969 Msa0383480:intron 30.0%
TCCATAAAGCAAAAATTGTG+GGG - chr3_1:86405519-86405538 Msa0383480:intron 30.0%
!! TAGGTTTCTAACTTGCTTTA+TGG + chr3_1:86405545-86405564 None:intergenic 30.0%
! TCATTTTCACTTCAATGCAT+AGG + chr3_1:86405564-86405583 None:intergenic 30.0%
ACAATCTTATGTTGCAGTTA+TGG - chr3_1:86405603-86405622 Msa0383480:intron 30.0%
TTAAAATTGGTCATGCATAC+CGG + chr3_1:86405694-86405713 None:intergenic 30.0%
TAAGACATATGTGACAAACA+TGG - chr3_1:86405711-86405730 Msa0383480:intron 30.0%
AAGACATATGTGACAAACAT+GGG - chr3_1:86405712-86405731 Msa0383480:intron 30.0%
TGTAAATGTCTGATTGTGAT+CGG - chr3_1:86405882-86405901 Msa0383480:intron 30.0%
AAGGTTGCTTAAATTGGAAT+TGG + chr3_1:86406011-86406030 None:intergenic 30.0%
CGCATAAACTAAGTCATATA+AGG + chr3_1:86406030-86406049 None:intergenic 30.0%
GGAGTTTATGTGAAATTGAT+TGG - chr3_1:86406073-86406092 Msa0383480:intron 30.0%
! CAGGCATCATATTGAATTTT+TGG + chr3_1:86406242-86406261 None:intergenic 30.0%
AACGGCAATAATAACTCAAA+TGG - chr3_1:86406868-86406887 Msa0383480:CDS 30.0%
GACCAGGGATATAGAATTAA+TGG - chr3_1:86403136-86403155 Msa0383480:CDS 35.0%
GAATTAATGGAAGAAAGTGG+TGG - chr3_1:86403149-86403168 Msa0383480:CDS 35.0%
!! GTGCATGAATATTTTAGGGA+AGG - chr3_1:86403485-86403504 Msa0383480:CDS 35.0%
!! TATTTTAGGGAAGGCAAAGA+TGG - chr3_1:86403494-86403513 Msa0383480:CDS 35.0%
!! ATTTTAGGGAAGGCAAAGAT+GGG - chr3_1:86403495-86403514 Msa0383480:CDS 35.0%
GAGAGATCGTAAATATCCAA+CGG - chr3_1:86403545-86403564 Msa0383480:CDS 35.0%
AGAGATCGTAAATATCCAAC+GGG - chr3_1:86403546-86403565 Msa0383480:CDS 35.0%
!! CAATTACTTTTCTCTCCTCT+AGG + chr3_1:86403702-86403721 None:intergenic 35.0%
CTAGAGGAGAGAAAAGTAAT+TGG - chr3_1:86403700-86403719 Msa0383480:CDS 35.0%
! AGGTGGATTTAGAGTGAATA+CGG + chr3_1:86403740-86403759 None:intergenic 35.0%
ATTCACTCTAAATCCACCTT+TGG - chr3_1:86403741-86403760 Msa0383480:intron 35.0%
! ACATACCTTGTTTGTTCCAA+AGG + chr3_1:86403760-86403779 None:intergenic 35.0%
CCATCATCTGTAATTAGTGA+AGG + chr3_1:86403944-86403963 None:intergenic 35.0%
CCTTCACTAATTACAGATGA+TGG - chr3_1:86403941-86403960 Msa0383480:intron 35.0%
TATCCTAGGATATGTGTTGA+GGG - chr3_1:86403991-86404010 Msa0383480:intron 35.0%
GATGACATATCTAACCATCA+GGG - chr3_1:86404054-86404073 Msa0383480:intron 35.0%
TCAAATTCACACAAATGCTC+GGG - chr3_1:86404661-86404680 Msa0383480:intron 35.0%
ATAGAATGCACTTGAGTCTT+CGG + chr3_1:86404701-86404720 None:intergenic 35.0%
GACATCTTGGAATAGTTTAG+TGG + chr3_1:86404728-86404747 None:intergenic 35.0%
ACCGATACGCTCAAAATATT+TGG + chr3_1:86404954-86404973 None:intergenic 35.0%
!!! TGACGTTTTTTCTTGTGAGA+TGG - chr3_1:86405193-86405212 Msa0383480:intron 35.0%
AAGGTTGGATTTCGATAAGA+TGG + chr3_1:86405311-86405330 None:intergenic 35.0%
AACACGTTCTTATTACCTCA+AGG + chr3_1:86405369-86405388 None:intergenic 35.0%
! GGGAAAATTTTTCTCCAAAG+TGG + chr3_1:86405430-86405449 None:intergenic 35.0%
TTCTGCAATAACAGGTTCTT+GGG + chr3_1:86405462-86405481 None:intergenic 35.0%
TTTCTGCAATAACAGGTTCT+TGG + chr3_1:86405463-86405482 None:intergenic 35.0%
ACCTGTTATTGCAGAAATTG+TGG - chr3_1:86405466-86405485 Msa0383480:intron 35.0%
CCTGTTATTGCAGAAATTGT+GGG - chr3_1:86405467-86405486 Msa0383480:intron 35.0%
CTGTTATTGCAGAAATTGTG+GGG - chr3_1:86405468-86405487 Msa0383480:intron 35.0%
! AGATGCTCTAAGTTATTCAC+CGG - chr3_1:86405672-86405691 Msa0383480:intron 35.0%
!! TCTTGTGTTGCTTTAAAGTG+AGG - chr3_1:86405789-86405808 Msa0383480:intron 35.0%
TATACTAGTAAAGAGCAAGC+AGG + chr3_1:86406261-86406280 None:intergenic 35.0%
!! TGTAGGATTTTCAAGAAGAG+TGG - chr3_1:86406370-86406389 Msa0383480:CDS 35.0%
ATTGAATCCTTATAGCATGC+AGG - chr3_1:86406444-86406463 Msa0383480:CDS 35.0%
! CAAAGTGGTTTGTGTTGTAA+TGG + chr3_1:86406728-86406747 None:intergenic 35.0%
TTACAACACAAACCACTTTG+CGG - chr3_1:86406728-86406747 Msa0383480:intron 35.0%
TTGTTGCATGAGCAAAATGT+GGG + chr3_1:86406768-86406787 None:intergenic 35.0%
ATTGTTGCATGAGCAAAATG+TGG + chr3_1:86406769-86406788 None:intergenic 35.0%
TGCTCATGCAACAATGAATA+TGG - chr3_1:86406774-86406793 Msa0383480:CDS 35.0%
GCTCATGCAACAATGAATAT+GGG - chr3_1:86406775-86406794 Msa0383480:CDS 35.0%
TCAAATGGCAATAGGTACAT+GGG - chr3_1:86406883-86406902 Msa0383480:CDS 35.0%
GTAGGATGAAATCGAAATCC+CGG + chr3_1:86403194-86403213 None:intergenic 40.0%
GTGATGAGTTCTTCATCTGT+AGG + chr3_1:86403212-86403231 None:intergenic 40.0%
CAAAGATGGGAGAAAAGGAA+TGG - chr3_1:86403508-86403527 Msa0383480:CDS 40.0%
! GATTTCTCGATCTTTTCCTG+TGG + chr3_1:86403613-86403632 None:intergenic 40.0%
GGTTGGAATGAAGAAGACTT+TGG - chr3_1:86403656-86403675 Msa0383480:CDS 40.0%
!! ATCCACCTTTGGAACAAACA+AGG - chr3_1:86403752-86403771 Msa0383480:intron 40.0%
! TACCTTGTTTGTTCCAAAGG+TGG + chr3_1:86403757-86403776 None:intergenic 40.0%
CTATCCTAGGATATGTGTTG+AGG - chr3_1:86403990-86404009 Msa0383480:intron 40.0%
ATACCCTCAACACATATCCT+AGG + chr3_1:86403997-86404016 None:intergenic 40.0%
GGATGACATATCTAACCATC+AGG - chr3_1:86404053-86404072 Msa0383480:intron 40.0%
ATTCCACTTGTATGGTTAGC+AGG + chr3_1:86404879-86404898 None:intergenic 40.0%
! TCTAGAACTGGCTAGAAAGT+AGG + chr3_1:86405392-86405411 None:intergenic 40.0%
! TACTTTCTAGCCAGTTCTAG+AGG - chr3_1:86405391-86405410 Msa0383480:intron 40.0%
CCCACAATTTCTGCAATAAC+AGG + chr3_1:86405470-86405489 None:intergenic 40.0%
! GCCCCACAATTTTTGCTTTA+TGG + chr3_1:86405523-86405542 None:intergenic 40.0%
TCAGAGACTATAAGCGTTCA+AGG - chr3_1:86405856-86405875 Msa0383480:intron 40.0%
!! ATTTTCAAGAAGAGTGGCAG+TGG - chr3_1:86406376-86406395 Msa0383480:CDS 40.0%
TGTTGGAACTGGAATTGCAA+GGG + chr3_1:86406411-86406430 None:intergenic 40.0%
TTGTTGGAACTGGAATTGCA+AGG + chr3_1:86406412-86406431 None:intergenic 40.0%
TGCTCTTGTATTGTTGGAAC+TGG + chr3_1:86406422-86406441 None:intergenic 40.0%
AGTTCCAACAATACAAGAGC+AGG - chr3_1:86406421-86406440 Msa0383480:CDS 40.0%
CAATCCTGCTCTTGTATTGT+TGG + chr3_1:86406428-86406447 None:intergenic 40.0%
CCTATTTCCTGCATGCTATA+AGG + chr3_1:86406454-86406473 None:intergenic 40.0%
CCTTATAGCATGCAGGAAAT+AGG - chr3_1:86406451-86406470 Msa0383480:CDS 40.0%
TCATGCAGATACTGCATCAT+TGG + chr3_1:86406511-86406530 None:intergenic 40.0%
GCTCCTCGTAATTTCCTTTA+CGG - chr3_1:86406544-86406563 Msa0383480:CDS 40.0%
CTCGTAATTTCCTTTACGGA+CGG - chr3_1:86406548-86406567 Msa0383480:CDS 40.0%
AACTGGGTATATTGCATCGT+TGG + chr3_1:86406616-86406635 None:intergenic 40.0%
AAATGCAGGGTAGTTCAACT+GGG + chr3_1:86406632-86406651 None:intergenic 40.0%
AAAATGCAGGGTAGTTCAAC+TGG + chr3_1:86406633-86406652 None:intergenic 40.0%
GAGAAGGATTCAGCATTTCA+GGG - chr3_1:86406665-86406684 Msa0383480:intron 40.0%
! GCTTAACTTGAACCTTGGAT+CGG - chr3_1:86406687-86406706 Msa0383480:intron 40.0%
! CTTAACTTGAACCTTGGATC+GGG - chr3_1:86406688-86406707 Msa0383480:intron 40.0%
AAATGTGGGGAATGTTGCAT+TGG + chr3_1:86406754-86406773 None:intergenic 40.0%
TGTTGCATGAGCAAAATGTG+GGG + chr3_1:86406767-86406786 None:intergenic 40.0%
GTACTAGAAACCATGAGCAA+CGG - chr3_1:86406850-86406869 Msa0383480:CDS 40.0%
GTTATTATTGCCGTTGCTCA+TGG + chr3_1:86406863-86406882 None:intergenic 40.0%
CTCAAATGGCAATAGGTACA+TGG - chr3_1:86406882-86406901 Msa0383480:CDS 40.0%
ATGGGAATGGAGAATTGCAT+GGG - chr3_1:86406901-86406920 Msa0383480:CDS 40.0%
! GGAAGAAAGTGGTGGAAAAG+AGG - chr3_1:86403157-86403176 Msa0383480:CDS 45.0%
AAAAGAGGAAACCCTACCAC+CGG - chr3_1:86403172-86403191 Msa0383480:CDS 45.0%
AAATCGAAATCCCGGTGGTA+GGG + chr3_1:86403186-86403205 None:intergenic 45.0%
CACATACATACACTAGTGCG+TGG + chr3_1:86403345-86403364 None:intergenic 45.0%
GAAGGCAAAGATGGGAGAAA+AGG - chr3_1:86403503-86403522 Msa0383480:CDS 45.0%
! AGTATCCGGTGTTTGTTGCT+CGG + chr3_1:86403584-86403603 None:intergenic 45.0%
TGACAGTGTTACATCGGAGT+TGG - chr3_1:86403635-86403654 Msa0383480:CDS 45.0%
! AGTGTTACATCGGAGTTGGT+TGG - chr3_1:86403639-86403658 Msa0383480:CDS 45.0%
! AACATGGCCTCCGATTTTAC+AGG + chr3_1:86404085-86404104 None:intergenic 45.0%
!! CCACATCATTCCTCTAGAAC+TGG + chr3_1:86405404-86405423 None:intergenic 45.0%
!! CCAGTTCTAGAGGAATGATG+TGG - chr3_1:86405401-86405420 Msa0383480:intron 45.0%
! GAATGATGTGGATGCCACTT+TGG - chr3_1:86405413-86405432 Msa0383480:intron 45.0%
ATTGCAGAAATTGTGGGGAC+CGG - chr3_1:86405473-86405492 Msa0383480:intron 45.0%
CTAATTGTGACATGTGCAGC+AGG - chr3_1:86406333-86406352 Msa0383480:CDS 45.0%
ACATGTGCAGCAGGATGAAT+GGG - chr3_1:86406342-86406361 Msa0383480:CDS 45.0%
AGGATGAATGGGTGATCTGT+AGG - chr3_1:86406353-86406372 Msa0383480:CDS 45.0%
AGATACTGCATCATTGGTGG+TGG + chr3_1:86406505-86406524 None:intergenic 45.0%
TGCAGATACTGCATCATTGG+TGG + chr3_1:86406508-86406527 None:intergenic 45.0%
AGGAAATTACGAGGAGCAGA+AGG + chr3_1:86406541-86406560 None:intergenic 45.0%
CGTCCGTAAAGGAAATTACG+AGG + chr3_1:86406550-86406569 None:intergenic 45.0%
!! TATGCTGATTCCGTCCGTAA+AGG + chr3_1:86406561-86406580 None:intergenic 45.0%
! TACCCTGCATTTTCAGCAAC+AGG - chr3_1:86406640-86406659 Msa0383480:intron 45.0%
CTCCTGTTGCTGAAAATGCA+GGG + chr3_1:86406645-86406664 None:intergenic 45.0%
! TTTTCAGCAACAGGAGGAGA+AGG - chr3_1:86406649-86406668 Msa0383480:intron 45.0%
GGAGAAGGATTCAGCATTTC+AGG - chr3_1:86406664-86406683 Msa0383480:intron 45.0%
! TCAGGGCTTAACTTGAACCT+TGG - chr3_1:86406682-86406701 Msa0383480:intron 45.0%
TGGCAATAGGTACATGGGAA+TGG - chr3_1:86406888-86406907 Msa0383480:CDS 45.0%
CATGGGAATGGAGAATTGCA+TGG - chr3_1:86406900-86406919 Msa0383480:CDS 45.0%
GCATGGGTCTAGATACTTAC+TGG - chr3_1:86406917-86406936 Msa0383480:CDS 45.0%
!!! ATTGTTTTAATATTAAAATT+TGG - chr3_1:86404267-86404286 Msa0383480:intron 5.0%
!!! TTGTTTTAATATTAAAATTT+GGG - chr3_1:86404268-86404287 Msa0383480:intron 5.0%
!! ATATTAAAAAAAAAAAATTG+AGG - chr3_1:86404796-86404815 Msa0383480:intron 5.0%
AAAGAGGAAACCCTACCACC+GGG - chr3_1:86403173-86403192 Msa0383480:CDS 50.0%
GAAATCGAAATCCCGGTGGT+AGG + chr3_1:86403187-86403206 None:intergenic 50.0%
GGATGAAATCGAAATCCCGG+TGG + chr3_1:86403191-86403210 None:intergenic 50.0%
TACATACCTGGTAGCTCCCA+TGG + chr3_1:86403314-86403333 None:intergenic 50.0%
! GTCTCAAGACTAGCTAGCTG+AGG - chr3_1:86403418-86403437 Msa0383480:CDS 50.0%
ACCAACCGAGCAACAAACAC+CGG - chr3_1:86403576-86403595 Msa0383480:CDS 50.0%
GAGCAACAAACACCGGATAC+TGG - chr3_1:86403583-86403602 Msa0383480:CDS 50.0%
TCCTGTGGTCTTCCAGTATC+CGG + chr3_1:86403598-86403617 None:intergenic 50.0%
TACAAAGGCAGAGCTCCTAG+AGG - chr3_1:86403684-86403703 Msa0383480:CDS 50.0%
! TTTTACAGGAACGGCCCTGA+TGG + chr3_1:86404071-86404090 None:intergenic 50.0%
CAGGGCCGTTCCTGTAAAAT+CGG - chr3_1:86404072-86404091 Msa0383480:intron 50.0%
! GGCCTCCGATTTTACAGGAA+CGG + chr3_1:86404080-86404099 None:intergenic 50.0%
CACTTGAGTCTTCGGTCTTG+AGG + chr3_1:86404693-86404712 None:intergenic 50.0%
TTGAGGCTCCTAAGATTGCG+AGG - chr3_1:86404813-86404832 Msa0383480:intron 50.0%
ACTTGTATGGTTAGCAGGCC+GGG + chr3_1:86404874-86404893 None:intergenic 50.0%
CACTTGTATGGTTAGCAGGC+CGG + chr3_1:86404875-86404894 None:intergenic 50.0%
GGAGATGCTCTTACGAAGGT+TGG + chr3_1:86405326-86405345 None:intergenic 50.0%
CGTTGGAGATGCTCTTACGA+AGG + chr3_1:86405330-86405349 None:intergenic 50.0%
CTCCAACGTTGTTCCATGCA+CGG - chr3_1:86405342-86405361 Msa0383480:intron 50.0%
ATTACCTCAAGGACCGTGCA+TGG + chr3_1:86405358-86405377 None:intergenic 50.0%
AGGTTCTTGGGCGTTCTTGA+GGG + chr3_1:86405450-86405469 None:intergenic 50.0%
GACATGTGCAGCAGGATGAA+TGG - chr3_1:86406341-86406360 Msa0383480:CDS 50.0%
CCTCCTGTTGCTGAAAATGC+AGG + chr3_1:86406646-86406665 None:intergenic 50.0%
! CCTGCATTTTCAGCAACAGG+AGG - chr3_1:86406643-86406662 Msa0383480:intron 50.0%
AACTTGAACCTTGGATCGGG+CGG - chr3_1:86406691-86406710 Msa0383480:intron 50.0%
! ATGTTGCATTGGCCGCAAAG+TGG + chr3_1:86406743-86406762 None:intergenic 50.0%
TCTGAACCATGGGAGCTACC+AGG - chr3_1:86403305-86403324 Msa0383480:CDS 55.0%
GTGGCGTGTGTGTACATACC+TGG + chr3_1:86403326-86403345 None:intergenic 55.0%
! TCCGGTGTTTGTTGCTCGGT+TGG + chr3_1:86403580-86403599 None:intergenic 55.0%
ACCGGATACTGGAAGACCAC+AGG - chr3_1:86403594-86403613 Msa0383480:CDS 55.0%
GGCCGTTCCTGTAAAATCGG+AGG - chr3_1:86404075-86404094 Msa0383480:intron 55.0%
GGCATGTGCAAGGTGAGCTA+CGG + chr3_1:86404846-86404865 None:intergenic 55.0%
AGCTCACCTTGCACATGCCA+AGG - chr3_1:86404847-86404866 Msa0383480:intron 55.0%
GCTCACCTTGCACATGCCAA+GGG - chr3_1:86404848-86404867 Msa0383480:intron 55.0%
CGGCCTGCTAACCATACAAG+TGG - chr3_1:86404873-86404892 Msa0383480:intron 55.0%
GACCGTGCATGGAACAACGT+TGG + chr3_1:86405347-86405366 None:intergenic 55.0%
TGTTCCATGCACGGTCCTTG+AGG - chr3_1:86405351-86405370 Msa0383480:intron 55.0%
CAGGTTCTTGGGCGTTCTTG+AGG + chr3_1:86405451-86405470 None:intergenic 55.0%
! CGGTTGGTTCTCACACCCGT+TGG + chr3_1:86403564-86403583 None:intergenic 60.0%
GCTCCTAAGATTGCGAGGCC+CGG - chr3_1:86404818-86404837 Msa0383480:intron 60.0%
TGCAAGGTGAGCTACGGTGC+CGG + chr3_1:86404840-86404859 None:intergenic 60.0%
TTGAACCTTGGATCGGGCGG+AGG - chr3_1:86406694-86406713 Msa0383480:intron 60.0%
GTGCCGGGCCTCGCAATCTT+AGG + chr3_1:86404824-86404843 None:intergenic 65.0%
GCAAGGTGAGCTACGGTGCC+GGG + chr3_1:86404839-86404858 None:intergenic 65.0%
CCTTGCACATGCCAAGGGCC+CGG - chr3_1:86404853-86404872 Msa0383480:intron 65.0%
AACCTTGGATCGGGCGGAGG+AGG - chr3_1:86406697-86406716 Msa0383480:intron 65.0%
CCGGGCCCTTGGCATGTGCA+AGG + chr3_1:86404856-86404875 None:intergenic 70.0%
TGGTTAGCAGGCCGGGCCCT+TGG + chr3_1:86404867-86404886 None:intergenic 70.0%
CTCCTCCTCCGCCCGATCCA+AGG + chr3_1:86406702-86406721 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 86403122 86406954 86403122 ID=Msa0383480;Name=Msa0383480
chr3_1 mRNA 86403122 86406954 86403122 ID=Msa0383480-mRNA-1;Parent=Msa0383480;Name=Msa0383480-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.5|0|1|1|1|3|0|359
chr3_1 exon 86406750 86406954 86406750 ID=Msa0383480-mRNA-1:exon:22882;Parent=Msa0383480-mRNA-1
chr3_1 exon 86406303 86406574 86406303 ID=Msa0383480-mRNA-1:exon:22881;Parent=Msa0383480-mRNA-1
chr3_1 exon 86403122 86403724 86403122 ID=Msa0383480-mRNA-1:exon:22880;Parent=Msa0383480-mRNA-1
chr3_1 CDS 86406750 86406954 86406750 ID=Msa0383480-mRNA-1:cds;Parent=Msa0383480-mRNA-1
chr3_1 CDS 86406303 86406574 86406303 ID=Msa0383480-mRNA-1:cds;Parent=Msa0383480-mRNA-1
chr3_1 CDS 86403122 86403724 86403122 ID=Msa0383480-mRNA-1:cds;Parent=Msa0383480-mRNA-1
Gene Sequence

>Msa0383480

ATGGAGAAGGAGAGGACCAGGGATATAGAATTAATGGAAGAAAGTGGTGGAAAAGAGGAAACCCTACCACCGGGATTTCGATTTCATCCTACAGATGAAGAACTCATCACTTGCTATCTCATAAACAAGATATCAGATTCTAGTTTTACAGGCAAAGCAATAACTGATATAGATCTCAATAAATCTGAACCATGGGAGCTACCAGGGAAGGCAAAGATGGGAGAAAAGGAATGGTACTTTTTCAATATGAGAGATCGTAAATATCCAACGGGTGTGAGAACCAACCGAGCAACAAACACCGGATACTGGAAGACCACAGGAAAAGATCGAGAAATCTTTGACAGTGTTACATCGGAGTTGGTTGGAATGAAGAAGACTTTGGTCTTTTACAAAGGCAGAGCTCCTAGAGGAGAGAAAAGTAATTGGGTCATGCATGAATACCGTATTCACTCTAAATCCACCTTTGGAACAAACAAGCAGGATGAATGGGTGATCTGTAGGATTTTCAAGAAGAGTGGCAGTGGAAAAAAGTACCCTTGCAATTCCAGTTCCAACAATACAAGAGCAGGATTGAATCCTTATAGCATGCAGGAAATAGGTCCTAATAACATAAATCTGATATCGCTGCCACCACCAATGATGCAGTATCTGCATGAAGATTTTCCTTCTGCTCCTCGTAATTTCCTTTACGGACGGAATCAGCATAATAATAATTACATCAACTGTAATTCTACTGCACCAACGATGCAATATACCCAGTTGAACTACCCTGCATTTTCAGCAACAGGAGGAGAAGGATTCAGCATTTCAGGGCTTAACTTGAACCTTGGATCGGGCGGAGGAGGAGCTGCCATTACAACACAAACCACTTTGCGGCCAATGCAACATTCCCCACATTTTGCTCATGCAACAATGAATATGGGTGCAGACAATGATTATGTTGATGCAGATCAGAATATTATTAATAATATTGGAGTACTAGAAACCATGAGCAACGGCAATAATAACTCAAATGGCAATAGGTACATGGGAATGGAGAATTGCATGGGTCTAGATACTTACTGGCCTAATTCCTACTAA
Protein sequence

>Msa0383480

MEKERTRDIELMEESGGKEETLPPGFRFHPTDEELITCYLINKISDSSFTGKAITDIDLNKSEPWELPGKAKMGEKEWYFFNMRDRKYPTGVRTNRATNTGYWKTTGKDREIFDSVTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSTFGTNKQDEWVICRIFKKSGSGKKYPCNSSSNNTRAGLNPYSMQEIGPNNINLISLPPPMMQYLHEDFPSAPRNFLYGRNQHNNNYINCNSTAPTMQYTQLNYPAFSATGGEGFSISGLNLNLGSGGGGAAITTQTTLRPMQHSPHFAHATMNMGADNDYVDADQNIINNIGVLETMSNGNNNSNGNRYMGMENCMGLDTYWPNSY*