AlfalfaGEDB | Msa1359840

M. sativa cultivar zhongmu-4 / Msa1359840

KEGG: -
GO: GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1359840	XP_013464754.1	93.056	360	19	2	1	360	1	354	0.0	687

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1359840	sp\|Q9SQL0\|JA2_SOLLC	59.043	376	109	11	3	360	1	349	1.21e-136	395

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1359840	A0A072V9S3	93.056	360	19	2	1	360	1	354	0.0	687

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TFs/TRs:

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Gene ID	Type	Classification
Msa1359840	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0127870	Msa1359840	0.820001	8.638226e-53	-8.615850e-47
Msa0174010	Msa1359840	0.823151	1.616487e-53	-8.615850e-47
Msa0216490	Msa1359840	0.900429	7.393894e-78	-8.615850e-47
Msa0256390	Msa1359840	0.943573	9.431093e-103	-8.615850e-47
Msa0295820	Msa1359840	0.906816	9.898180e-81	-8.615850e-47
Msa0390550	Msa1359840	0.821007	5.074627e-53	-8.615850e-47
Msa1031440	Msa1359840	0.812994	3.204173e-51	-8.615850e-47
Msa1070520	Msa1359840	0.803593	3.238090e-49	-8.615850e-47
Msa1101220	Msa1359840	0.809611	1.737015e-50	-8.615850e-47
Msa1158370	Msa1359840	0.800839	1.193821e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1359840	MtrunA17_Chr2g0318081	93.056	360	19	2	1	360	1	354	0.0	687
Msa1359840	MtrunA17_Chr8g0359921	65.330	349	96	8	3	349	1	326	1.68e-149	424
Msa1359840	MtrunA17_Chr3g0124761	66.279	172	54	2	12	180	3	173	4.39e-78	241
Msa1359840	MtrunA17_Chr2g0318101	64.162	173	49	2	13	172	12	184	2.10e-76	239
Msa1359840	MtrunA17_Chr8g0384721	67.702	161	47	2	14	170	5	164	2.06e-75	234
Msa1359840	MtrunA17_Chr4g0047841	63.388	183	42	3	16	173	15	197	1.04e-74	234
Msa1359840	MtrunA17_Chr3g0130731	66.049	162	51	2	12	170	3	163	1.21e-73	230
Msa1359840	MtrunA17_Chr7g0252971	63.314	169	49	3	13	168	5	173	4.98e-73	230
Msa1359840	MtrunA17_Chr7g0263931	62.130	169	58	3	7	169	2	170	8.08e-71	224
Msa1359840	MtrunA17_Chr4g0042561	63.057	157	54	1	12	164	5	161	2.80e-70	221

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1359840	AT4G27410.2	78.636	220	46	1	3	222	1	219	7.65e-124	358
Msa1359840	AT1G52890.1	57.061	347	116	9	3	347	1	316	4.24e-121	352
Msa1359840	AT4G27410.3	72.996	237	46	2	3	222	1	236	2.49e-119	348
Msa1359840	AT3G15500.1	68.924	251	71	4	3	249	1	248	1.26e-117	343
Msa1359840	AT3G04070.2	62.694	193	57	5	8	187	4	194	1.78e-76	239
Msa1359840	AT1G01720.1	65.341	176	55	3	14	184	5	179	4.07e-76	236
Msa1359840	AT5G63790.1	59.162	191	69	3	12	197	46	232	2.66e-74	233
Msa1359840	AT5G63790.2	59.162	191	69	3	12	197	56	242	3.75e-74	233
Msa1359840	AT5G08790.1	64.072	167	54	2	12	173	3	168	6.14e-74	231
Msa1359840	AT1G61110.1	66.477	176	43	4	16	177	16	189	5.32e-73	230

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Find 121 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGCATGTGGTGTAAAT+AGG	0.381598	tig0016775:-814	Msa1359840:three_prime_UTR
AACAAGAAGCTCTTCATCAG+TGG	0.495470	tig0016775:+2561	Msa1359840:intergenic
AACCAAGTTGAGAATTCGTC+TGG	0.381998	tig0016775:-999	Msa1359840:CDS
AACTCACTTGGAAGAACCCA+TGG	0.541829	tig0016775:+2460	Msa1359840:intergenic
AAGCAATGGTCGTCAATTTG+TGG	0.495194	tig0016775:+1332	Msa1359840:intergenic
AAGGAACAATAGAATCATTG+GGG	0.673740	tig0016775:-655	Msa1359840:three_prime_UTR
AATAATTGAGTTGAAGATTT+TGG	0.169436	tig0016775:+2667	Msa1359840:intergenic
AATTCTTTGATTGATGATAA+TGG	0.229689	tig0016775:-2644	Msa1359840:exon
AATTTCGGCTAGAGATATGG+AGG	0.677355	tig0016775:-732	Msa1359840:three_prime_UTR
ACAAATGAAGGTAGAAAAGT+TGG	0.415542	tig0016775:-2196	Msa1359840:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTTCTTTAGTCCAAGAGAT+AGG	-	tig0016775:954-973	Msa1359840:CDS	30.0%
TGTTATAATCTTGTCTGTTC+CGG	+	tig0016775:1038-1057	Msa1359840:intergenic	30.0%
ACAAATGAAGGTAGAAAAGT+TGG	-	tig0016775:1055-1074	Msa1359840:CDS	30.0%
TAGGCTGATGATTTGAAAAT+GGG	-	tig0016775:1331-1350	Msa1359840:CDS	30.0%
GAATACACTCAATATAGCAA+CGG	-	tig0016775:1847-1866	Msa1359840:intron	30.0%
TGCTGCAAATAACAATTTCA+TGG	-	tig0016775:2020-2039	Msa1359840:intron	30.0%
GCCTAACAAAATTAGAAAAG+TGG	-	tig0016775:2474-2493	Msa1359840:CDS	30.0%
ACATTCTATGAATCTATCCA+TGG	-	tig0016775:2554-2573	Msa1359840:CDS	30.0%
CATTCTATGAATCTATCCAT+GGG	-	tig0016775:2555-2574	Msa1359840:CDS	30.0%
ATTCTATGAATCTATCCATG+GGG	-	tig0016775:2556-2575	Msa1359840:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0016775	gene	429	2844	429	ID=Msa1359840;Name=Msa1359840
tig0016775	mRNA	429	2844	429	ID=Msa1359840-mRNA-1;Parent=Msa1359840;Name=Msa1359840-mRNA-1;_AED=0.05;_eAED=0.05;_QI=191\|1\|1\|1\|1\|1\|3\|455\|360
tig0016775	exon	429	1510	429	ID=Msa1359840-mRNA-1:exon:11590;Parent=Msa1359840-mRNA-1
tig0016775	exon	2081	2349	2081	ID=Msa1359840-mRNA-1:exon:11589;Parent=Msa1359840-mRNA-1
tig0016775	exon	2467	2844	2467	ID=Msa1359840-mRNA-1:exon:11588;Parent=Msa1359840-mRNA-1
tig0016775	five_prime_UTR	2654	2844	2654	ID=Msa1359840-mRNA-1:five_prime_utr;Parent=Msa1359840-mRNA-1
tig0016775	CDS	2467	2653	2467	ID=Msa1359840-mRNA-1:cds;Parent=Msa1359840-mRNA-1
tig0016775	CDS	2081	2349	2081	ID=Msa1359840-mRNA-1:cds;Parent=Msa1359840-mRNA-1
tig0016775	CDS	884	1510	884	ID=Msa1359840-mRNA-1:cds;Parent=Msa1359840-mRNA-1
tig0016775	three_prime_UTR	429	883	429	ID=Msa1359840-mRNA-1:three_prime_utr;Parent=Msa1359840-mRNA-1

Gene Sequence

>Msa1359840

ATGATAATGGGAATTCAAGACAAAGATCCTCTTGCACAATTGAGTTTACCTCCTGGTTTTCGATTTTACCCCACTGATGAAGAGCTTCTTGTTCAATATCTATGTCGTAAAGTAGCTGGTCATCATTTTTCTCTTCAAATCATTGCTGAAATTGATCTCTACAAATTCGACCCATGGGTTCTTCCAAGTAAGGCAATTTTTGGTGAGAAAGAATGGTATTTCTTTAGTCCAAGAGATAGGAAGTATCCAAATGGGACTAGGCCAAATAGAGTAGCTGGATCTGGGTATTGGAAAGCCACCGGAACAGACAAGATTATAACAAATGAAGGTAGAAAAGTTGGTATAAAAAAAGCACTTGTTTTTTATGTTGGTAAAGCTCCTAAAGGCACCAAAACTAATTGGATTATGCATGAGTATCGACTACTTGACTCTTCACGAAACAACGGTGGCACCAAGCTAGATGATTGGGTTCTATGTCGTATCTACAAGAAAAATTCAAGTGCACAAAAACCTATTCCAAATGGCGTCGTTTCAAGTAGAGAATACACTCAATATAGCAACGGTTCATCGTCTTCTTCATCATCCCACCTCGACGACGTTCTTGAATCACTTCCACAAATTGACGACCATTGCTTCAAGCTGCCACGTGTCAACTCGCTAAGAACGGCGCAACATCACCAACAAGAAGAGAAGATGAATCTTCAAAATTTAAATGCTGCAAATAACAATTTCATGGATTGGTCTAATTCATCATCGATTTTGAACACAGTAACAGGGTTTCAAGACGGTCAAACTCAAGGAATGATGAATTTTAGTGGTTGCAATGACCTTTATGTCCCTTCTGTCCCCACATTATGTCAATTGGACACTTCCGTTATTACGGAGAAAACTAGCAAGATACCCGTGCATCCGACTGAAGAGGAGGTTCAAAGTGGGGCGAGAGCAAACCAAGTTGAGAATTCGTCTGGGTTTTTTCAACGCGGTTCAAATGATTTTAATCAAGGTATGGGATACACTAATCCGGTTGACCCGTTTGGGTTTAGATACCCGGTTCAACCGGTTGGATTTGGATTCCAACAATGA

Protein sequence

>Msa1359840

MIMGIQDKDPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLQIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGTRPNRVAGSGYWKATGTDKIITNEGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLLDSSRNNGGTKLDDWVLCRIYKKNSSAQKPIPNGVVSSREYTQYSNGSSSSSSSHLDDVLESLPQIDDHCFKLPRVNSLRTAQHHQQEEKMNLQNLNAANNNFMDWSNSSSILNTVTGFQDGQTQGMMNFSGCNDLYVPSVPTLCQLDTSVITEKTSKIPVHPTEEEVQSGARANQVENSSGFFQRGSNDFNQGMGYTNPVDPFGFRYPVQPVGFGFQQ*