AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1359840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1359840 MtrunA17_Chr2g0318081 93.056 360 19 2 1 360 1 354 0.0 687
Msa1359840 MtrunA17_Chr8g0359921 65.330 349 96 8 3 349 1 326 1.68e-149 424
Msa1359840 MtrunA17_Chr3g0124761 66.279 172 54 2 12 180 3 173 4.39e-78 241
Msa1359840 MtrunA17_Chr2g0318101 64.162 173 49 2 13 172 12 184 2.10e-76 239
Msa1359840 MtrunA17_Chr8g0384721 67.702 161 47 2 14 170 5 164 2.06e-75 234
Msa1359840 MtrunA17_Chr4g0047841 63.388 183 42 3 16 173 15 197 1.04e-74 234
Msa1359840 MtrunA17_Chr3g0130731 66.049 162 51 2 12 170 3 163 1.21e-73 230
Msa1359840 MtrunA17_Chr7g0252971 63.314 169 49 3 13 168 5 173 4.98e-73 230
Msa1359840 MtrunA17_Chr7g0263931 62.130 169 58 3 7 169 2 170 8.08e-71 224
Msa1359840 MtrunA17_Chr4g0042561 63.057 157 54 1 12 164 5 161 2.80e-70 221
Msa1359840 MtrunA17_Chr5g0417791 63.871 155 52 1 14 164 1 155 3.38e-70 220
Msa1359840 MtrunA17_Chr2g0326361 59.756 164 60 2 12 169 10 173 2.75e-68 217
Msa1359840 MtrunA17_Chr2g0309891 55.063 158 68 2 11 165 1 158 2.41e-60 197
Msa1359840 MtrunA17_Chr5g0433781 51.351 185 79 2 11 193 1 176 4.87e-60 204
Msa1359840 MtrunA17_Chr6g0484441 55.769 156 67 1 16 171 5 158 3.94e-59 194
Msa1359840 MtrunA17_Chr3g0091921 55.090 167 73 1 13 177 13 179 2.56e-58 191
Msa1359840 MtrunA17_Chr6g0453451 52.000 175 82 1 6 178 10 184 3.45e-58 191
Msa1359840 MtrunA17_Chr3g0109821 50.262 191 90 3 11 198 1 189 7.15e-58 199
Msa1359840 MtrunA17_Chr4g0060931 53.293 167 76 1 13 177 14 180 1.34e-57 191
Msa1359840 MtrunA17_Chr7g0253011 48.792 207 86 4 14 212 15 209 5.88e-57 190
Msa1359840 MtrunA17_Chr6g0481091 51.592 157 74 1 11 165 1 157 1.42e-56 184
Msa1359840 MtrunA17_Chr5g0417001 52.083 192 80 6 7 187 6 196 1.73e-56 189
Msa1359840 MtrunA17_Chr3g0139331 54.430 158 68 2 15 170 10 165 8.41e-56 186
Msa1359840 MtrunA17_Chr4g0076731 56.051 157 62 3 18 171 56 208 2.39e-55 187
Msa1359840 MtrunA17_Chr4g0017921 55.263 152 62 2 16 164 8 156 2.06e-54 182
Msa1359840 MtrunA17_Chr1g0147421 53.459 159 69 3 15 170 26 182 2.08e-54 182
Msa1359840 MtrunA17_Chr6g0453131 52.469 162 67 2 16 167 15 176 5.31e-54 182
Msa1359840 MtrunA17_Chr5g0405211 44.670 197 101 3 16 206 8 202 5.55e-54 181
Msa1359840 MtrunA17_Chr8g0361731 48.168 191 87 5 18 196 16 206 8.92e-54 182
Msa1359840 MtrunA17_Chr2g0309331 50.595 168 74 4 12 172 6 171 4.44e-53 179
Msa1359840 MtrunA17_Chr2g0316971 55.000 160 60 3 16 167 23 178 6.02e-53 179
Msa1359840 MtrunA17_Chr1g0200561 47.399 173 86 2 16 185 19 189 1.50e-52 177
Msa1359840 MtrunA17_Chr5g0400461 51.786 168 67 4 11 168 1 164 2.12e-52 176
Msa1359840 MtrunA17_Chr8g0372121 48.765 162 78 2 11 169 1 160 3.17e-52 175
Msa1359840 MtrunA17_Chr5g0442771 47.150 193 89 3 18 198 20 211 1.35e-51 174
Msa1359840 MtrunA17_Chr6g0461661 46.759 216 87 6 14 213 16 219 1.58e-51 176
Msa1359840 MtrunA17_Chr4g0018391 50.658 152 70 2 16 164 7 156 1.73e-51 174
Msa1359840 MtrunA17_Chr8g0346001 47.879 165 74 2 12 164 11 175 2.64e-51 176
Msa1359840 MtrunA17_Chr4g0054791 44.949 198 103 3 15 207 5 201 5.70e-51 172
Msa1359840 MtrunA17_Chr7g0214071 54.658 161 66 3 12 170 11 166 7.41e-51 170
Msa1359840 MtrunA17_Chr2g0312321 44.898 196 91 5 11 201 6 189 2.23e-50 170
Msa1359840 MtrunA17_Chr4g0056541 51.316 152 69 2 16 164 7 156 2.63e-50 172
Msa1359840 MtrunA17_Chr7g0217721 38.224 259 136 4 13 255 16 266 3.03e-50 171
Msa1359840 MtrunA17_Chr2g0311661 46.798 203 83 6 18 202 23 218 5.12e-50 169
Msa1359840 MtrunA17_Chr2g0311651 49.133 173 72 4 18 174 24 196 1.17e-48 166
Msa1359840 MtrunA17_Chr5g0398971 50.000 154 70 4 16 164 7 158 1.44e-48 167
Msa1359840 MtrunA17_Chr7g0217711 54.264 129 59 0 13 141 16 144 5.71e-47 157
Msa1359840 MtrunA17_Chr1g0183741 42.326 215 89 6 3 196 1 201 5.75e-47 160
Msa1359840 MtrunA17_Chr5g0428991 50.000 164 77 2 6 164 12 175 1.79e-46 167
Msa1359840 MtrunA17_Chr3g0130101 46.309 149 78 1 18 164 9 157 5.57e-46 160
Msa1359840 MtrunA17_Chr7g0261411 48.148 162 74 3 3 162 1 154 1.22e-45 157
Msa1359840 MtrunA17_Chr8g0364791 42.614 176 96 2 11 184 1 173 2.31e-45 161
Msa1359840 MtrunA17_Chr3g0128151 48.750 160 80 1 11 168 17 176 2.47e-45 163
Msa1359840 MtrunA17_Chr3g0128111 48.052 154 74 3 19 168 45 196 8.33e-45 154
Msa1359840 MtrunA17_Chr1g0201021 45.283 159 85 1 14 170 17 175 1.22e-44 161
Msa1359840 MtrunA17_Chr1g0197351 48.521 169 76 3 15 175 41 206 2.25e-44 159
Msa1359840 MtrunA17_Chr3g0092671 38.889 234 121 6 18 248 7 221 2.75e-44 160
Msa1359840 MtrunA17_Chr4g0038751 49.375 160 72 4 13 169 13 166 2.90e-44 154
Msa1359840 MtrunA17_Chr3g0144271 47.619 168 80 4 1 162 8 173 7.44e-44 156
Msa1359840 MtrunA17_Chr1g0197361 48.718 156 76 3 18 170 10 164 1.18e-43 159
Msa1359840 MtrunA17_Chr8g0384201 41.477 176 98 2 11 184 1 173 1.61e-43 157
Msa1359840 MtrunA17_Chr3g0131911 47.531 162 73 3 16 167 14 173 2.30e-41 145
Msa1359840 MtrunA17_Chr8g0385991 45.000 160 79 3 16 168 14 171 4.96e-41 144
Msa1359840 MtrunA17_Chr2g0321741 46.212 132 62 3 36 166 12 135 2.70e-36 134
Msa1359840 MtrunA17_Chr4g0050701 40.123 162 81 3 16 169 11 164 8.29e-36 129
Msa1359840 MtrunA17_Chr2g0321631 45.570 158 72 5 17 162 5 160 1.49e-35 130
Msa1359840 MtrunA17_Chr8g0345671 46.104 154 66 6 16 161 11 155 7.36e-35 132
Msa1359840 MtrunA17_Chr7g0266701 36.598 194 103 8 16 191 4 195 1.01e-34 128
Msa1359840 MtrunA17_Chr4g0026141 43.038 158 77 6 16 162 5 160 1.64e-33 125
Msa1359840 MtrunA17_Chr3g0113001 44.444 144 74 2 65 205 14 154 1.98e-33 125
Msa1359840 MtrunA17_Chr8g0345691 40.909 154 74 6 16 161 12 156 1.59e-29 117
Msa1359840 MtrunA17_Chr8g0345711 42.537 134 71 4 11 139 7 139 2.04e-28 108
Msa1359840 MtrunA17_Chr8g0345731 41.985 131 69 4 16 139 24 154 1.33e-26 103
Msa1359840 MtrunA17_Chr8g0384351 35.294 204 107 7 12 215 6 184 1.63e-25 101
Msa1359840 MtrunA17_Chr3g0113031 42.748 131 68 4 79 205 3 130 9.33e-25 101
Msa1359840 MtrunA17_Chr8g0345721 35.955 178 72 6 3 139 15 191 2.52e-24 99.0
Msa1359840 MtrunA17_Chr7g0243371 57.317 82 32 2 69 148 17 97 7.81e-23 92.4
Msa1359840 MtrunA17_Chr8g0345701 40.972 144 63 6 15 139 6 146 1.52e-22 93.2
Msa1359840 MtrunA17_Chr8g0345741 36.170 141 75 5 27 162 2 132 2.98e-22 91.7
Msa1359840 MtrunA17_Chr3g0130321 30.952 210 117 6 14 209 5 200 2.15e-21 90.9
Msa1359840 MtrunA17_Chr7g0251661 30.201 149 95 5 12 154 6 151 1.63e-18 81.6
Msa1359840 MtrunA17_Chr7g0251651 32.558 129 81 4 14 139 16 141 4.63e-14 70.1
Msa1359840 MtrunA17_Chr8g0389661 32.895 152 76 5 14 141 45 194 3.97e-12 67.4
Msa1359840 MtrunA17_Chr7g0274971 35.714 154 83 9 22 165 11 158 5.61e-12 64.7
Msa1359840 MtrunA17_Chr3g0113011 50.000 52 26 0 13 64 16 67 2.27e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1359840 AT4G27410.2 78.636 220 46 1 3 222 1 219 7.65e-124 358
Msa1359840 AT1G52890.1 57.061 347 116 9 3 347 1 316 4.24e-121 352
Msa1359840 AT4G27410.3 72.996 237 46 2 3 222 1 236 2.49e-119 348
Msa1359840 AT3G15500.1 68.924 251 71 4 3 249 1 248 1.26e-117 343
Msa1359840 AT3G04070.2 62.694 193 57 5 8 187 4 194 1.78e-76 239
Msa1359840 AT1G01720.1 65.341 176 55 3 14 184 5 179 4.07e-76 236
Msa1359840 AT5G63790.1 59.162 191 69 3 12 197 46 232 2.66e-74 233
Msa1359840 AT5G63790.2 59.162 191 69 3 12 197 56 242 3.75e-74 233
Msa1359840 AT5G08790.1 64.072 167 54 2 12 173 3 168 6.14e-74 231
Msa1359840 AT1G61110.1 66.477 176 43 4 16 177 16 189 5.32e-73 230
Msa1359840 AT1G77450.1 65.432 162 52 2 12 170 6 166 7.62e-73 227
Msa1359840 AT3G04070.1 57.895 209 57 6 8 187 4 210 1.88e-72 229
Msa1359840 AT1G69490.1 62.963 162 56 1 12 169 5 166 5.74e-71 223
Msa1359840 AT3G15510.1 64.417 163 45 3 20 169 21 183 9.43e-70 223
Msa1359840 AT3G18400.1 43.388 242 128 3 16 250 5 244 1.12e-62 203
Msa1359840 AT1G52880.1 63.125 160 47 2 20 167 21 180 3.18e-61 199
Msa1359840 AT1G65910.1 48.990 198 96 3 11 204 1 197 6.62e-59 201
Msa1359840 AT5G07680.1 52.105 190 86 3 3 190 4 190 8.28e-59 193
Msa1359840 AT3G17730.1 46.114 193 92 3 11 200 1 184 2.75e-58 189
Msa1359840 AT5G61430.1 45.726 234 108 5 13 227 13 246 3.94e-58 192
Msa1359840 AT2G02450.1 52.874 174 79 2 18 190 53 224 1.14e-57 192
Msa1359840 AT2G02450.2 52.874 174 79 2 18 190 53 224 1.75e-57 192
Msa1359840 AT5G07680.2 53.631 179 78 3 14 190 1 176 2.26e-57 189
Msa1359840 AT2G24430.2 52.299 174 80 2 1 172 1 173 2.58e-57 189
Msa1359840 AT2G24430.1 52.299 174 80 2 1 172 1 173 2.58e-57 189
Msa1359840 AT3G03200.1 48.691 191 91 3 11 198 1 187 7.44e-57 192
Msa1359840 AT5G18270.2 49.505 202 95 4 14 212 19 216 1.81e-56 187
Msa1359840 AT5G17260.1 53.049 164 74 2 11 171 1 164 3.18e-56 191
Msa1359840 AT5G39610.1 49.749 199 84 4 13 197 17 213 1.09e-55 184
Msa1359840 AT1G26870.1 50.811 185 79 4 7 179 7 191 1.37e-55 187
Msa1359840 AT5G18270.1 48.515 202 97 4 14 212 19 216 1.58e-55 185
Msa1359840 AT5G39820.1 49.730 185 68 4 18 177 22 206 1.33e-54 182
Msa1359840 AT2G43000.1 54.194 155 70 1 18 171 20 174 1.38e-54 181
Msa1359840 AT3G04060.1 49.505 202 90 5 14 212 18 210 3.13e-54 182
Msa1359840 AT2G33480.1 57.143 154 63 1 14 167 13 163 7.85e-54 179
Msa1359840 AT4G10350.1 51.974 152 70 1 16 164 9 160 1.13e-53 180
Msa1359840 AT5G53950.1 56.051 157 65 2 16 168 17 173 5.07e-53 179
Msa1359840 AT2G18060.3 48.171 164 80 2 9 169 2 163 5.28e-53 179
Msa1359840 AT2G18060.1 48.171 164 80 2 9 169 2 163 5.28e-53 179
Msa1359840 AT2G33480.2 57.143 154 61 2 14 167 13 161 7.47e-53 176
Msa1359840 AT1G71930.2 42.640 197 103 3 9 197 2 196 9.10e-53 177
Msa1359840 AT1G71930.1 42.640 197 103 3 9 197 2 196 9.10e-53 177
Msa1359840 AT1G33280.1 52.632 152 66 2 16 164 8 156 1.77e-52 176
Msa1359840 AT1G79580.3 54.140 157 65 3 12 164 13 166 2.18e-52 178
Msa1359840 AT1G79580.5 54.140 157 65 3 12 164 13 166 2.18e-52 178
Msa1359840 AT1G79580.4 54.140 157 65 3 12 164 13 166 2.18e-52 178
Msa1359840 AT1G79580.2 54.140 157 65 3 12 164 13 166 2.18e-52 178
Msa1359840 AT1G79580.1 54.140 157 65 3 12 164 13 166 2.18e-52 178
Msa1359840 AT5G46590.1 55.195 154 65 3 16 165 6 159 3.76e-52 175
Msa1359840 AT1G54330.1 52.866 157 69 2 11 165 1 154 3.97e-52 175
Msa1359840 AT3G29035.1 53.750 160 72 1 13 170 21 180 6.74e-52 175
Msa1359840 AT5G13180.1 56.604 159 63 4 14 170 12 166 7.97e-52 173
Msa1359840 AT3G15170.1 53.896 154 67 2 16 165 20 173 3.26e-51 173
Msa1359840 AT4G17980.1 53.750 160 60 4 16 165 6 161 4.59e-51 171
Msa1359840 AT4G17980.2 52.121 165 65 4 11 165 1 161 7.93e-51 171
Msa1359840 AT1G32510.1 43.182 220 100 5 16 210 6 225 9.80e-51 171
Msa1359840 AT4G36160.1 51.634 153 69 2 15 164 9 159 1.28e-50 173
Msa1359840 AT4G36160.3 51.634 153 69 2 15 164 9 159 1.28e-50 173
Msa1359840 AT4G36160.2 51.634 153 69 2 15 164 13 163 1.36e-50 173
Msa1359840 AT1G56010.2 46.875 160 81 2 11 166 14 173 1.93e-50 171
Msa1359840 AT5G66300.1 50.000 156 74 2 15 167 11 165 2.05e-50 171
Msa1359840 AT3G12977.1 46.541 159 84 1 11 168 13 171 2.15e-50 170
Msa1359840 AT1G12260.2 50.641 156 72 2 16 168 7 160 2.47e-50 172
Msa1359840 AT1G12260.1 50.641 156 72 2 16 168 7 160 3.09e-50 173
Msa1359840 AT3G10480.2 50.633 158 76 1 11 166 22 179 3.62e-50 174
Msa1359840 AT1G76420.1 48.837 172 77 3 3 164 1 171 5.42e-50 171
Msa1359840 AT5G62380.2 51.974 152 68 2 16 164 7 156 7.30e-50 171
Msa1359840 AT5G62380.1 51.974 152 68 2 16 164 7 156 7.30e-50 171
Msa1359840 AT1G33060.2 48.466 163 82 1 11 171 19 181 1.73e-49 176
Msa1359840 AT1G33060.1 48.466 163 82 1 11 171 19 181 1.79e-49 176
Msa1359840 AT1G32770.1 45.604 182 85 3 12 179 12 193 2.00e-49 170
Msa1359840 AT5G46590.2 56.028 141 59 2 16 153 6 146 2.55e-49 167
Msa1359840 AT1G62700.1 50.641 156 72 2 16 168 7 160 2.88e-49 170
Msa1359840 AT1G62700.2 50.641 156 72 2 16 168 7 160 2.88e-49 170
Msa1359840 AT2G46770.1 41.038 212 106 3 12 204 12 223 8.21e-49 168
Msa1359840 AT3G10480.1 50.314 159 76 2 11 166 22 180 9.38e-49 170
Msa1359840 AT3G10500.1 50.000 158 77 1 15 170 8 165 1.46e-48 172
Msa1359840 AT4G35580.3 45.408 196 99 3 15 208 8 197 1.98e-48 171
Msa1359840 AT4G35580.2 45.408 196 99 3 15 208 8 197 2.06e-48 171
Msa1359840 AT4G35580.1 45.408 196 99 3 15 208 8 197 2.27e-48 171
Msa1359840 AT5G04410.1 50.000 158 77 1 15 170 8 165 5.47e-48 171
Msa1359840 AT5G24590.2 42.929 198 105 3 6 200 3 195 5.69e-48 168
Msa1359840 AT3G10490.1 50.323 155 74 2 15 166 26 180 7.40e-48 162
Msa1359840 AT3G10490.2 50.000 158 70 3 15 166 26 180 4.12e-47 166
Msa1359840 AT3G61910.1 43.478 184 88 3 12 179 7 190 1.65e-46 161
Msa1359840 AT2G17040.1 40.909 220 116 5 18 231 8 219 5.01e-46 159
Msa1359840 AT3G12910.1 38.783 263 123 9 6 239 15 268 4.15e-45 157
Msa1359840 AT3G49530.2 47.134 157 80 2 11 164 8 164 5.83e-45 159
Msa1359840 AT1G34180.3 45.161 155 83 1 18 170 18 172 8.97e-45 160
Msa1359840 AT3G49530.1 47.134 157 80 2 11 164 8 164 1.56e-44 159
Msa1359840 AT2G27300.1 38.009 221 110 5 11 212 9 221 3.44e-44 155
Msa1359840 AT1G34180.1 45.161 155 83 1 18 170 18 172 5.23e-44 160
Msa1359840 AT5G64060.1 44.586 157 85 1 11 165 1 157 5.71e-44 155
Msa1359840 AT3G10480.3 43.085 188 71 3 15 166 26 213 6.65e-44 159
Msa1359840 AT1G34190.1 43.871 155 85 1 18 170 18 172 6.74e-44 159
Msa1359840 AT5G22290.1 41.304 184 92 5 18 194 23 197 9.06e-44 154
Msa1359840 AT1G34180.4 42.515 167 82 1 18 170 18 184 2.41e-42 153
Msa1359840 AT3G44290.2 43.396 159 78 3 18 171 16 167 4.03e-42 147
Msa1359840 AT4G28530.1 45.556 180 72 6 3 164 1 172 4.73e-42 150
Msa1359840 AT1G34180.2 42.515 167 82 1 18 170 18 184 1.02e-41 154
Msa1359840 AT3G44290.1 43.396 159 78 3 18 171 16 167 2.43e-41 148
Msa1359840 AT5G09330.5 42.675 157 88 1 11 165 1 157 6.69e-41 150
Msa1359840 AT5G09330.2 42.675 157 88 1 11 165 1 157 6.69e-41 150
Msa1359840 AT5G09330.4 42.675 157 88 1 11 165 1 157 6.69e-41 150
Msa1359840 AT5G09330.3 42.675 157 88 1 11 165 1 157 6.69e-41 150
Msa1359840 AT5G09330.1 42.675 157 88 1 11 165 1 157 6.69e-41 150
Msa1359840 AT1G32870.1 50.314 159 73 3 16 170 10 166 6.75e-41 150
Msa1359840 AT1G32870.2 50.314 159 73 3 16 170 10 166 8.12e-41 150
Msa1359840 AT1G32870.3 50.314 159 73 3 16 170 46 202 1.54e-40 150
Msa1359840 AT5G61430.2 42.857 182 85 5 65 227 2 183 1.67e-35 130
Msa1359840 AT4G10350.2 55.208 96 43 0 69 164 18 113 1.16e-33 126
Msa1359840 AT1G56010.1 51.429 105 48 1 65 166 2 106 2.19e-33 125
Msa1359840 AT5G64530.1 39.306 173 77 4 14 170 1 161 3.54e-33 122
Msa1359840 AT2G33480.3 57.576 99 42 0 69 167 8 106 6.83e-33 122
Msa1359840 AT3G44350.2 40.491 163 86 5 16 169 5 165 1.08e-32 122
Msa1359840 AT3G12977.2 52.427 103 48 1 65 166 14 116 1.83e-32 121
Msa1359840 AT5G22380.1 37.245 196 111 8 19 203 8 202 5.94e-31 117
Msa1359840 AT5G04395.1 42.857 147 66 3 12 141 24 169 1.50e-30 115
Msa1359840 AT5G64530.2 44.697 132 59 3 14 143 1 120 3.95e-30 113
Msa1359840 AT3G44350.1 42.029 138 70 4 16 145 5 140 1.73e-29 111
Msa1359840 AT4G01550.1 37.714 175 90 7 19 184 7 171 1.25e-26 110
Msa1359840 AT3G04420.2 41.732 127 70 2 17 139 4 130 2.84e-26 106
Msa1359840 AT2G43000.2 50.526 95 46 1 78 171 2 96 3.91e-26 103
Msa1359840 AT4G28530.2 35.758 165 51 3 16 164 10 135 5.42e-26 106
Msa1359840 AT3G04420.1 41.732 127 70 2 17 139 4 130 6.21e-26 106
Msa1359840 AT4G01520.1 35.632 174 97 6 17 180 5 173 8.27e-25 102
Msa1359840 AT4G27410.1 62.069 87 32 1 136 222 1 86 2.24e-24 98.2
Msa1359840 AT4G01540.3 36.047 172 95 6 19 180 7 173 2.39e-24 103
Msa1359840 AT4G01540.4 36.047 172 95 6 19 180 7 173 2.59e-24 103
Msa1359840 AT4G01540.2 36.257 171 94 6 19 179 7 172 4.00e-24 102
Msa1359840 AT4G01540.1 36.257 171 94 6 19 179 7 172 4.01e-24 103
Msa1359840 AT1G02230.1 41.538 130 66 5 17 139 4 130 3.29e-23 99.4
Msa1359840 AT1G02250.1 35.503 169 95 5 14 175 1 162 3.38e-22 96.7
Msa1359840 AT1G02220.1 37.692 130 74 3 14 139 1 127 4.65e-21 94.0
Msa1359840 AT3G56530.1 36.601 153 92 4 13 162 49 199 1.37e-20 91.7
Msa1359840 AT3G10490.4 49.367 79 39 1 89 166 2 80 2.60e-20 91.3
Msa1359840 AT3G10490.3 49.367 79 39 1 89 166 2 80 2.60e-20 91.3
Msa1359840 AT2G18060.2 47.368 76 38 1 94 169 2 75 9.40e-19 85.5
Msa1359840 AT5G50820.1 37.226 137 70 5 14 144 15 141 4.55e-18 81.6
Msa1359840 AT3G55210.1 34.161 161 88 5 16 162 11 167 6.86e-18 83.2
Msa1359840 AT1G01010.1 34.146 164 85 8 19 168 6 160 2.65e-17 83.2
Msa1359840 AT5G22290.2 39.623 106 49 4 95 194 2 98 3.15e-17 80.5
Msa1359840 AT5G14000.1 31.646 158 97 4 14 167 13 163 2.42e-16 77.4
Msa1359840 AT5G14000.2 34.615 130 81 2 14 141 13 140 8.95e-16 74.3
Msa1359840 AT3G04430.1 35.606 132 71 5 22 140 6 136 4.31e-12 65.1
Msa1359840 AT4G28500.1 34.641 153 80 6 16 150 59 209 3.19e-11 63.9
Msa1359840 AT4G29230.1 31.210 157 81 5 10 141 42 196 4.72e-11 64.3

Find 121 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAATTGAGTTGAAGATTT+TGG 0.169436 tig0016775:+2667 Msa1359840:intergenic
AATTCTTTGATTGATGATAA+TGG 0.229689 tig0016775:-2644 Msa1359840:exon
CTAAAGGCACCAAAACTAAT+TGG 0.246600 tig0016775:-2135 Msa1359840:CDS
CCGGTTCAACCGGTTGGATT+TGG 0.265550 tig0016775:-897 Msa1359840:CDS
CCAGATCCAGCTACTCTATT+TGG 0.287866 tig0016775:+2253 Msa1359840:intergenic
ATGCATAATCCAATTAGTTT+TGG 0.307345 tig0016775:+2126 Msa1359840:intergenic
ATTCTTTGATTGATGATAAT+GGG 0.307918 tig0016775:-2643 Msa1359840:exon
CTCAATTTCGGCTAGAGATA+TGG 0.309590 tig0016775:-735 Msa1359840:three_prime_UTR
GATTCATCTTCTCTTCTTGT+TGG 0.315390 tig0016775:+1267 Msa1359840:intergenic
TAAATAGGCGGGGATTCTTT+TGG 0.317812 tig0016775:-799 Msa1359840:three_prime_UTR
TGCTGCAAATAACAATTTCA+TGG 0.318107 tig0016775:-1231 Msa1359840:CDS
CTAATCCGGTTGACCCGTTT+GGG 0.322735 tig0016775:-929 Msa1359840:CDS
CATTGATGTGGTTAGCTAAA+AGG 0.330943 tig0016775:+478 Msa1359840:intergenic
TGTTATAATCTTGTCTGTTC+CGG 0.334569 tig0016775:+2216 Msa1359840:intergenic
TTGCATTTGTTTGCAATGTT+AGG 0.337412 tig0016775:-527 Msa1359840:three_prime_UTR
CTATTTGGCCTAGTCCCATT+TGG 0.338304 tig0016775:+2268 Msa1359840:intergenic
TTTGGATACTTCCTATCTCT+TGG 0.340923 tig0016775:+2286 Msa1359840:intergenic
CTACTTGAAACGACGCCATT+TGG 0.343967 tig0016775:+1428 Msa1359840:intergenic
CCAAATCCAACCGGTTGAAC+CGG 0.359372 tig0016775:+897 Msa1359840:intergenic
TGAAGGAACAATAGAATCAT+TGG 0.360300 tig0016775:-657 Msa1359840:three_prime_UTR
ATTGGACACTTCCGTTATTA+CGG 0.370558 tig0016775:-1084 Msa1359840:CDS
GAAACGACGCCATTTGGAAT+AGG 0.373309 tig0016775:+1434 Msa1359840:intergenic
ACTAATCCGGTTGACCCGTT+TGG 0.373818 tig0016775:-930 Msa1359840:CDS
AAAGTGCATGTGGTGTAAAT+AGG 0.381598 tig0016775:-814 Msa1359840:three_prime_UTR
AACCAAGTTGAGAATTCGTC+TGG 0.381998 tig0016775:-999 Msa1359840:CDS
CCAAATAGAGTAGCTGGATC+TGG 0.382299 tig0016775:-2253 Msa1359840:CDS
TTGTTTGCAATGTTAGGCTT+TGG 0.386740 tig0016775:-521 Msa1359840:three_prime_UTR
CTTCCTATCCGGTTCATTGT+TGG 0.391276 tig0016775:+871 Msa1359840:intergenic
TGTCCCCACATTATGTCAAT+TGG 0.393100 tig0016775:-1102 Msa1359840:CDS
TTGAATTGCAGCTAGATGAT+TGG 0.399386 tig0016775:-1499 Msa1359840:intron
TGAATTGCAGCTAGATGATT+GGG 0.406156 tig0016775:-1498 Msa1359840:intron
GAAGGAACAATAGAATCATT+GGG 0.409016 tig0016775:-656 Msa1359840:three_prime_UTR
ACAAATGAAGGTAGAAAAGT+TGG 0.415542 tig0016775:-2196 Msa1359840:CDS
ATTTCTTTAGTCCAAGAGAT+AGG 0.426397 tig0016775:-2297 Msa1359840:CDS
CTAAACCCAAACGGGTCAAC+CGG 0.428969 tig0016775:+924 Msa1359840:intergenic
CAAATAACAATTTCATGGAT+TGG 0.437272 tig0016775:-1226 Msa1359840:CDS
CCCGTTTGGGTTTAGATACC+CGG 0.440772 tig0016775:-916 Msa1359840:CDS
TTTCCTTCTAACTTCCTATC+CGG 0.448826 tig0016775:+860 Msa1359840:intergenic
GAGTAGCTGGATCTGGGTAT+TGG 0.458403 tig0016775:-2246 Msa1359840:CDS
GAACCGGATAGGAAGTTAGA+AGG 0.460954 tig0016775:-863 Msa1359840:three_prime_UTR
GCCTAACAAAATTAGAAAAG+TGG 0.463768 tig0016775:-777 Msa1359840:three_prime_UTR
GTTTAGATACCCGGTTCAAC+CGG 0.466337 tig0016775:-907 Msa1359840:CDS
TCCTCTTCAGTCGGATGCAC+GGG 0.469154 tig0016775:+1044 Msa1359840:intergenic
AGAGATAGGAAGTATCCAAA+TGG 0.473419 tig0016775:-2283 Msa1359840:CDS
TTTGGATTCCAACAATGAAC+CGG 0.476582 tig0016775:-879 Msa1359840:exon
TTCTCAATAAACGGTAGACA+TGG 0.477440 tig0016775:+2792 Msa1359840:intergenic
TATGTTGGTAAAGCTCCTAA+AGG 0.483857 tig0016775:-2151 Msa1359840:CDS
ACTAGGCCAAATAGAGTAGC+TGG 0.487807 tig0016775:-2259 Msa1359840:CDS
TGGGGACAGAAGGGACATAA+AGG 0.491862 tig0016775:+1117 Msa1359840:intergenic
AAGCAATGGTCGTCAATTTG+TGG 0.495194 tig0016775:+1332 Msa1359840:intergenic
AACAAGAAGCTCTTCATCAG+TGG 0.495470 tig0016775:+2561 Msa1359840:intergenic
TATAGCTAGGTTGTAGAAGA+AGG 0.495780 tig0016775:+2694 Msa1359840:intergenic
ATCTCTACAAATTCGACCCA+TGG 0.496775 tig0016775:-2477 Msa1359840:CDS
CCGGGTATCTAAACCCAAAC+GGG 0.497333 tig0016775:+916 Msa1359840:intergenic
ACATTCTATGAATCTATCCA+TGG 0.501104 tig0016775:-697 Msa1359840:three_prime_UTR
ACCGGGTATCTAAACCCAAA+CGG 0.506194 tig0016775:+915 Msa1359840:intergenic
TTCACTACTTTATCTCCCCA+TGG 0.509914 tig0016775:+680 Msa1359840:intergenic
GACAAGATTATAACAAATGA+AGG 0.510810 tig0016775:-2208 Msa1359840:CDS
TGACATAATGTGGGGACAGA+AGG 0.514449 tig0016775:+1107 Msa1359840:intergenic
CAAATAGAGTAGCTGGATCT+GGG 0.514453 tig0016775:-2252 Msa1359840:CDS
TGTTGGAATCCAAATCCAAC+CGG 0.518411 tig0016775:+888 Msa1359840:intergenic
TATCTATGTCGTAAAGTAGC+TGG 0.519439 tig0016775:-2535 Msa1359840:CDS
TGCATGTGGTGTAAATAGGC+GGG 0.520635 tig0016775:-810 Msa1359840:three_prime_UTR
TTCAAGAACGTCGTCGAGGT+GGG 0.522480 tig0016775:+1361 Msa1359840:intergenic
CAAATCCAACCGGTTGAACC+GGG 0.522706 tig0016775:+898 Msa1359840:intergenic
AGTGTCCAATTGACATAATG+TGG 0.525796 tig0016775:+1097 Msa1359840:intergenic
CTCCTCTTCAGTCGGATGCA+CGG 0.528695 tig0016775:+1043 Msa1359840:intergenic
GGAAGTATCCAAATGGGACT+AGG 0.531933 tig0016775:-2276 Msa1359840:CDS
GAGATAGGAAGTATCCAAAT+GGG 0.536430 tig0016775:-2282 Msa1359840:CDS
ACCCAGACGAATTCTCAACT+TGG 0.539808 tig0016775:+997 Msa1359840:intergenic
AACTCACTTGGAAGAACCCA+TGG 0.541829 tig0016775:+2460 Msa1359840:intergenic
ATTCAAGAACGTCGTCGAGG+TGG 0.545842 tig0016775:+1360 Msa1359840:intergenic
CTTTGAACCTCCTCTTCAGT+CGG 0.546459 tig0016775:+1035 Msa1359840:intergenic
AGGTATGGGATACACTAATC+CGG 0.551375 tig0016775:-943 Msa1359840:CDS
CACGTGGCAGCTTGAAGCAA+TGG 0.554810 tig0016775:+1318 Msa1359840:intergenic
CATTCTATGAATCTATCCAT+GGG 0.556174 tig0016775:-696 Msa1359840:three_prime_UTR
CATATCTCTAGCCGAAATTG+AGG 0.556183 tig0016775:+736 Msa1359840:intergenic
GCACAATTGAGTTTACCTCC+TGG 0.560444 tig0016775:-2598 Msa1359840:CDS
GGAGATAAAGTAGTGAATGA+AGG 0.566636 tig0016775:-674 Msa1359840:three_prime_UTR
TCTCAATAAACGGTAGACAT+GGG 0.567264 tig0016775:+2793 Msa1359840:intergenic
ACAAGAAGCTCTTCATCAGT+GGG 0.569952 tig0016775:+2562 Msa1359840:intergenic
AGATACCCGGTTCAACCGGT+TGG 0.574244 tig0016775:-903 Msa1359840:CDS
CTCAATAAACGGTAGACATG+GGG 0.578042 tig0016775:+2794 Msa1359840:intergenic
GACATAATGTGGGGACAGAA+GGG 0.579791 tig0016775:+1108 Msa1359840:intergenic
TTTCAAGACGGTCAAACTCA+AGG 0.582786 tig0016775:-1167 Msa1359840:CDS
GGTAAACTCAATTGTGCAAG+AGG 0.592070 tig0016775:+2604 Msa1359840:intergenic
TATAATCTTGTCTGTTCCGG+TGG 0.597425 tig0016775:+2219 Msa1359840:intergenic
TCTGGGTATTGGAAAGCCAC+CGG 0.602092 tig0016775:-2235 Msa1359840:CDS
GTGCATGTGGTGTAAATAGG+CGG 0.604816 tig0016775:-811 Msa1359840:three_prime_UTR
CTGAAGAGGAGGTTCAAAGT+GGG 0.606883 tig0016775:-1031 Msa1359840:CDS
TCTCTACAAATTCGACCCAT+GGG 0.608644 tig0016775:-2476 Msa1359840:CDS
GTGTCCAATTGACATAATGT+GGG 0.609196 tig0016775:+1098 Msa1359840:intergenic
ACCAAGTTGAGAATTCGTCT+GGG 0.609603 tig0016775:-998 Msa1359840:CDS
ACGTGTCAACTCGCTAAGAA+CGG 0.615896 tig0016775:-1300 Msa1359840:CDS
ATTCCAACAATGAACCGGAT+AGG 0.618682 tig0016775:-874 Msa1359840:exon
GTGGGGTAAAATCGAAAACC+AGG 0.620046 tig0016775:+2580 Msa1359840:intergenic
GCATGTGGTGTAAATAGGCG+GGG 0.620364 tig0016775:-809 Msa1359840:three_prime_UTR
AGCTAGGTTGTAGAAGAAGG+TGG 0.626028 tig0016775:+2697 Msa1359840:intergenic
ACCCGTGCATCCGACTGAAG+AGG 0.627654 tig0016775:-1045 Msa1359840:CDS
TTCGGCTAGAGATATGGAGG+TGG 0.631945 tig0016775:-729 Msa1359840:three_prime_UTR
CGTGCATCCGACTGAAGAGG+AGG 0.634276 tig0016775:-1042 Msa1359840:CDS
AGAACAAAACGCGATTCATG+TGG 0.635402 tig0016775:+571 Msa1359840:intergenic
ACTGAAGAGGAGGTTCAAAG+TGG 0.641217 tig0016775:-1032 Msa1359840:CDS
GTGATTCAAGAACGTCGTCG+AGG 0.650602 tig0016775:+1357 Msa1359840:intergenic
GACTCTTCACGAAACAACGG+TGG 0.660789 tig0016775:-2088 Msa1359840:CDS
GTTCTTAGCGAGTTGACACG+TGG 0.662417 tig0016775:+1302 Msa1359840:intergenic
CTTGACTCTTCACGAAACAA+CGG 0.662587 tig0016775:-2091 Msa1359840:CDS
TGAAGAGGAGGTTCAAAGTG+GGG 0.669043 tig0016775:-1030 Msa1359840:CDS
AAGGAACAATAGAATCATTG+GGG 0.673740 tig0016775:-655 Msa1359840:three_prime_UTR
GAATACACTCAATATAGCAA+CGG 0.676166 tig0016775:-1404 Msa1359840:CDS
AATTTCGGCTAGAGATATGG+AGG 0.677355 tig0016775:-732 Msa1359840:three_prime_UTR
GTGATATTTATAGTAACACA+TGG 0.678782 tig0016775:+2816 Msa1359840:intergenic
ACAGTAACAGGGTTTCAAGA+CGG 0.683973 tig0016775:-1179 Msa1359840:CDS
ACGAAACAACGGTGGCACCA+AGG 0.687136 tig0016775:-2080 Msa1359840:intron
ATGTGGCTAAAAGCATATGT+TGG 0.691957 tig0016775:+588 Msa1359840:intergenic
ACTCACTTGGAAGAACCCAT+GGG 0.692817 tig0016775:+2461 Msa1359840:intergenic
TGTAATAGTCAAAGTGCATG+TGG 0.694581 tig0016775:-824 Msa1359840:three_prime_UTR
TGTCCAATTGACATAATGTG+GGG 0.696814 tig0016775:+1099 Msa1359840:intergenic
ATTCTATGAATCTATCCATG+GGG 0.736638 tig0016775:-695 Msa1359840:three_prime_UTR
GGGTAAAATCGAAAACCAGG+AGG 0.741080 tig0016775:+2583 Msa1359830:intergenic
CAAGAAGCTCTTCATCAGTG+GGG 0.743838 tig0016775:+2563 Msa1359830:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTTTTTTCTCAATAAA+CGG + tig0016775:471-490 Msa0021260:intergenic 15.0%
!! CTTTAATATAAATAAACCAT+AGG + tig0016775:881-900 Msa1359840:intergenic 15.0%
!!! TATTACAAAGAATTTTATCT+AGG - tig0016775:1312-1331 Msa1359840:CDS 15.0%
!!! TTAAAAAAGAGTTTGATAAT+TGG + tig0016775:1578-1597 Msa1359840:intergenic 15.0%
!! GAATTGTGAAATAAATAATA+TGG + tig0016775:1610-1629 Msa1359840:intergenic 15.0%
!!! ATATTTTAAAATGGAACAAA+AGG + tig0016775:1637-1656 Msa1359840:intergenic 15.0%
!! TGTTGAAAAATTAATTGATT+AGG - tig0016775:2619-2638 Msa1359840:CDS 15.0%
!!! CTTTTTTTTTTCTCAATAAA+CGG + tig0016775:471-490 Msa1359840:intergenic 15.0%
!! CTTTAATATAAATAAACCAT+AGG + tig0016775:881-900 Msa1359840:intergenic 15.0%
!!! TATTACAAAGAATTTTATCT+AGG - tig0016775:1312-1331 Msa1359840:CDS 15.0%
!!! TTAAAAAAGAGTTTGATAAT+TGG + tig0016775:1578-1597 Msa1359840:intergenic 15.0%
!! GAATTGTGAAATAAATAATA+TGG + tig0016775:1610-1629 Msa1359840:intergenic 15.0%
!!! ATATTTTAAAATGGAACAAA+AGG + tig0016775:1637-1656 Msa1359840:intergenic 15.0%
!! TGTTGAAAAATTAATTGATT+AGG - tig0016775:2619-2638 Msa1359840:CDS 15.0%
!!! AATAATTGAGTTGAAGATTT+TGG + tig0016775:587-606 Msa0021260:intergenic 20.0%
!!! AATTCTTTGATTGATGATAA+TGG - tig0016775:607-626 Msa1359840:three_prime_UTR 20.0%
!!! ATTCTTTGATTGATGATAAT+GGG - tig0016775:608-627 Msa1359840:three_prime_UTR 20.0%
!!! ATTTGTTTTTGTTAGAATCA+CGG - tig0016775:828-847 Msa1359840:three_prime_UTR 20.0%
!! GATTTAAATAATTGTACCTA+TGG - tig0016775:862-881 Msa1359840:three_prime_UTR 20.0%
!! AATGAATGTATATAATACCT+TGG + tig0016775:1191-1210 Msa1359840:intergenic 20.0%
!! GTCAATATTTGATATTTCAA+AGG - tig0016775:1437-1456 Msa1359840:CDS 20.0%
!!! GATTGAACAACAAAATTTTT+AGG + tig0016775:1522-1541 Msa1359840:intergenic 20.0%
!! AAATAAATAATATGGTGACA+AGG + tig0016775:1602-1621 Msa1359840:intergenic 20.0%
!!! AGGAAGTGAATATTTTAAAA+TGG + tig0016775:1646-1665 Msa1359840:intergenic 20.0%
!!! TGTTTTACCAAATTGTTTTA+TGG - tig0016775:1684-1703 Msa1359840:intron 20.0%
!!! GTTTTACCAAATTGTTTTAT+GGG - tig0016775:1685-1704 Msa1359840:intron 20.0%
!! AATAATCCCATAAAACAATT+TGG + tig0016775:1694-1713 Msa1359840:intergenic 20.0%
!!! AAATGATTTTAATCAAGGTA+TGG - tig0016775:2293-2312 Msa1359840:CDS 20.0%
!!! AATGATTTTAATCAAGGTAT+GGG - tig0016775:2294-2313 Msa1359840:CDS 20.0%
!!! AAGTGGAAAAAATTGAATTT+TGG - tig0016775:2491-2510 Msa1359840:CDS 20.0%
!!! AATAATTGAGTTGAAGATTT+TGG + tig0016775:587-606 Msa1359840:intergenic 20.0%
!!! AATTCTTTGATTGATGATAA+TGG - tig0016775:607-626 Msa1359840:three_prime_UTR 20.0%
!!! ATTCTTTGATTGATGATAAT+GGG - tig0016775:608-627 Msa1359840:three_prime_UTR 20.0%
!!! ATTTGTTTTTGTTAGAATCA+CGG - tig0016775:828-847 Msa1359840:three_prime_UTR 20.0%
!! GATTTAAATAATTGTACCTA+TGG - tig0016775:862-881 Msa1359840:three_prime_UTR 20.0%
!! AATGAATGTATATAATACCT+TGG + tig0016775:1191-1210 Msa1359840:intergenic 20.0%
!! GTCAATATTTGATATTTCAA+AGG - tig0016775:1437-1456 Msa1359840:CDS 20.0%
!!! GATTGAACAACAAAATTTTT+AGG + tig0016775:1522-1541 Msa1359840:intergenic 20.0%
!! AAATAAATAATATGGTGACA+AGG + tig0016775:1602-1621 Msa1359840:intergenic 20.0%
!!! AGGAAGTGAATATTTTAAAA+TGG + tig0016775:1646-1665 Msa1359840:intergenic 20.0%
!!! TGTTTTACCAAATTGTTTTA+TGG - tig0016775:1684-1703 Msa1359840:intron 20.0%
!!! GTTTTACCAAATTGTTTTAT+GGG - tig0016775:1685-1704 Msa1359840:intron 20.0%
!! AATAATCCCATAAAACAATT+TGG + tig0016775:1694-1713 Msa1359840:intergenic 20.0%
!!! AAATGATTTTAATCAAGGTA+TGG - tig0016775:2293-2312 Msa1359840:CDS 20.0%
!!! AATGATTTTAATCAAGGTAT+GGG - tig0016775:2294-2313 Msa1359840:CDS 20.0%
!!! AAGTGGAAAAAATTGAATTT+TGG - tig0016775:2491-2510 Msa1359840:CDS 20.0%
! GTGATATTTATAGTAACACA+TGG + tig0016775:438-457 Msa0021260:intergenic 25.0%
! TCTAACAAAAACAAATTCGT+TGG + tig0016775:824-843 Msa1359840:intergenic 25.0%
! GACAAGATTATAACAAATGA+AGG - tig0016775:1043-1062 Msa1359840:CDS 25.0%
!!! AAAGCACTTGTTTTTTATGT+TGG - tig0016775:1085-1104 Msa1359840:CDS 25.0%
!!! ATGCATAATCCAATTAGTTT+TGG + tig0016775:1128-1147 Msa1359840:intergenic 25.0%
! TTAAAAAATTGGGTGATACA+TGG - tig0016775:1386-1405 Msa1359840:CDS 25.0%
! CAATTTGGTAAAACAGTAAA+AGG + tig0016775:1679-1698 Msa1359840:intergenic 25.0%
! CAAATAACAATTTCATGGAT+TGG - tig0016775:2025-2044 Msa1359840:intron 25.0%
!!! GGTTCAAATGATTTTAATCA+AGG - tig0016775:2288-2307 Msa1359840:CDS 25.0%
! GAAGTTAGAAGGAAAAAAAA+TGG - tig0016775:2399-2418 Msa1359840:intron 25.0%
!!! TCCACTTTTCTAATTTTGTT+AGG + tig0016775:2478-2497 Msa1359840:intergenic 25.0%
!!! GATTAGGATCATTTAGTTTT+TGG - tig0016775:2635-2654 Msa1359840:exon 25.0%
! GTGATATTTATAGTAACACA+TGG + tig0016775:438-457 Msa1359840:intergenic 25.0%
! TCTAACAAAAACAAATTCGT+TGG + tig0016775:824-843 Msa1359840:intergenic 25.0%
! GACAAGATTATAACAAATGA+AGG - tig0016775:1043-1062 Msa1359840:CDS 25.0%
!!! AAAGCACTTGTTTTTTATGT+TGG - tig0016775:1085-1104 Msa1359840:CDS 25.0%
!!! ATGCATAATCCAATTAGTTT+TGG + tig0016775:1128-1147 Msa1359840:intergenic 25.0%
! TTAAAAAATTGGGTGATACA+TGG - tig0016775:1386-1405 Msa1359840:CDS 25.0%
! CAATTTGGTAAAACAGTAAA+AGG + tig0016775:1679-1698 Msa1359840:intergenic 25.0%
! CAAATAACAATTTCATGGAT+TGG - tig0016775:2025-2044 Msa1359840:intron 25.0%
!!! GGTTCAAATGATTTTAATCA+AGG - tig0016775:2288-2307 Msa1359840:CDS 25.0%
! GAAGTTAGAAGGAAAAAAAA+TGG - tig0016775:2399-2418 Msa1359840:intron 25.0%
!!! TCCACTTTTCTAATTTTGTT+AGG + tig0016775:2478-2497 Msa1359840:intergenic 25.0%
!!! GATTAGGATCATTTAGTTTT+TGG - tig0016775:2635-2654 Msa1359840:exon 25.0%
!! AGATTTTGGTGATTATAGCT+AGG + tig0016775:573-592 Msa0021260:intergenic 30.0%
!! TGTGTGTGATTAATTTGTGT+AGG - tig0016775:902-921 Msa1359840:CDS 30.0%
!! GTGATTAATTTGTGTAGGTA+AGG - tig0016775:907-926 Msa1359840:CDS 30.0%
!!! CAATTTTTGGTGAGAAAGAA+TGG - tig0016775:930-949 Msa1359840:CDS 30.0%
ATTTCTTTAGTCCAAGAGAT+AGG - tig0016775:954-973 Msa1359840:CDS 30.0%
TGTTATAATCTTGTCTGTTC+CGG + tig0016775:1038-1057 Msa1359840:intergenic 30.0%
ACAAATGAAGGTAGAAAAGT+TGG - tig0016775:1055-1074 Msa1359840:CDS 30.0%
TAGGCTGATGATTTGAAAAT+GGG - tig0016775:1331-1350 Msa1359840:CDS 30.0%
! AGAGTTTGATAATTGGCAAA+GGG + tig0016775:1571-1590 Msa1359840:intergenic 30.0%
! AAGAGTTTGATAATTGGCAA+AGG + tig0016775:1572-1591 Msa1359840:intergenic 30.0%
GAATACACTCAATATAGCAA+CGG - tig0016775:1847-1866 Msa1359840:intron 30.0%
TGCTGCAAATAACAATTTCA+TGG - tig0016775:2020-2039 Msa1359840:intron 30.0%
! CAAGGAATGATGAATTTTAG+TGG - tig0016775:2102-2121 Msa1359840:CDS 30.0%
GCCTAACAAAATTAGAAAAG+TGG - tig0016775:2474-2493 Msa1359840:CDS 30.0%
!! TGAATTTTGGTCCTCAATTT+CGG - tig0016775:2504-2523 Msa1359840:CDS 30.0%
ACATTCTATGAATCTATCCA+TGG - tig0016775:2554-2573 Msa1359840:CDS 30.0%
CATTCTATGAATCTATCCAT+GGG - tig0016775:2555-2574 Msa1359840:CDS 30.0%
ATTCTATGAATCTATCCATG+GGG - tig0016775:2556-2575 Msa1359840:CDS 30.0%
TGAAGGAACAATAGAATCAT+TGG - tig0016775:2594-2613 Msa1359840:CDS 30.0%
GAAGGAACAATAGAATCATT+GGG - tig0016775:2595-2614 Msa1359840:CDS 30.0%
AAGGAACAATAGAATCATTG+GGG - tig0016775:2596-2615 Msa1359840:CDS 30.0%
TTGCATTTGTTTGCAATGTT+AGG - tig0016775:2724-2743 Msa1359840:five_prime_UTR 30.0%
!!! ACTTTTATGTAGCATTGATG+TGG + tig0016775:2788-2807 Msa1359840:intergenic 30.0%
!! AGATTTTGGTGATTATAGCT+AGG + tig0016775:573-592 Msa1359840:intergenic 30.0%
!! TGTGTGTGATTAATTTGTGT+AGG - tig0016775:902-921 Msa1359840:CDS 30.0%
!! GTGATTAATTTGTGTAGGTA+AGG - tig0016775:907-926 Msa1359840:CDS 30.0%
!!! CAATTTTTGGTGAGAAAGAA+TGG - tig0016775:930-949 Msa1359840:CDS 30.0%
ATTTCTTTAGTCCAAGAGAT+AGG - tig0016775:954-973 Msa1359840:CDS 30.0%
TGTTATAATCTTGTCTGTTC+CGG + tig0016775:1038-1057 Msa1359840:intergenic 30.0%
ACAAATGAAGGTAGAAAAGT+TGG - tig0016775:1055-1074 Msa1359840:CDS 30.0%
TAGGCTGATGATTTGAAAAT+GGG - tig0016775:1331-1350 Msa1359840:CDS 30.0%
! AGAGTTTGATAATTGGCAAA+GGG + tig0016775:1571-1590 Msa1359840:intergenic 30.0%
! AAGAGTTTGATAATTGGCAA+AGG + tig0016775:1572-1591 Msa1359840:intergenic 30.0%
GAATACACTCAATATAGCAA+CGG - tig0016775:1847-1866 Msa1359840:intron 30.0%
TGCTGCAAATAACAATTTCA+TGG - tig0016775:2020-2039 Msa1359840:intron 30.0%
! CAAGGAATGATGAATTTTAG+TGG - tig0016775:2102-2121 Msa1359840:CDS 30.0%
GCCTAACAAAATTAGAAAAG+TGG - tig0016775:2474-2493 Msa1359840:CDS 30.0%
!! TGAATTTTGGTCCTCAATTT+CGG - tig0016775:2504-2523 Msa1359840:CDS 30.0%
ACATTCTATGAATCTATCCA+TGG - tig0016775:2554-2573 Msa1359840:CDS 30.0%
CATTCTATGAATCTATCCAT+GGG - tig0016775:2555-2574 Msa1359840:CDS 30.0%
ATTCTATGAATCTATCCATG+GGG - tig0016775:2556-2575 Msa1359840:CDS 30.0%
TGAAGGAACAATAGAATCAT+TGG - tig0016775:2594-2613 Msa1359840:CDS 30.0%
GAAGGAACAATAGAATCATT+GGG - tig0016775:2595-2614 Msa1359840:CDS 30.0%
AAGGAACAATAGAATCATTG+GGG - tig0016775:2596-2615 Msa1359840:CDS 30.0%
TTGCATTTGTTTGCAATGTT+AGG - tig0016775:2724-2743 Msa1359840:five_prime_UTR 30.0%
!!! ACTTTTATGTAGCATTGATG+TGG + tig0016775:2788-2807 Msa1359840:intergenic 30.0%
TCTCAATAAACGGTAGACAT+GGG + tig0016775:461-480 Msa0021260:intergenic 35.0%
TTCTCAATAAACGGTAGACA+TGG + tig0016775:462-481 Msa0021260:intergenic 35.0%
TATAGCTAGGTTGTAGAAGA+AGG + tig0016775:560-579 Msa0021260:intergenic 35.0%
TATCTATGTCGTAAAGTAGC+TGG - tig0016775:716-735 Msa1359840:three_prime_UTR 35.0%
! TGTGTAGGTAAGGCAATTTT+TGG - tig0016775:917-936 Msa1359840:CDS 35.0%
TTTGGATACTTCCTATCTCT+TGG + tig0016775:968-987 Msa1359840:intergenic 35.0%
!! AGAGATAGGAAGTATCCAAA+TGG - tig0016775:968-987 Msa1359840:CDS 35.0%
!! GAGATAGGAAGTATCCAAAT+GGG - tig0016775:969-988 Msa1359840:CDS 35.0%
! TATGTTGGTAAAGCTCCTAA+AGG - tig0016775:1100-1119 Msa1359840:CDS 35.0%
!!! CAATTAGTTTTGGTGCCTTT+AGG + tig0016775:1118-1137 Msa1359840:intergenic 35.0%
!! CTAAAGGCACCAAAACTAAT+TGG - tig0016775:1116-1135 Msa1359840:CDS 35.0%
CTAGGCTGATGATTTGAAAA+TGG - tig0016775:1330-1349 Msa1359840:CDS 35.0%
CAGTAAAAGGTCAAAAACAG+AGG + tig0016775:1666-1685 Msa1359840:intergenic 35.0%
TTGAATTGCAGCTAGATGAT+TGG - tig0016775:1752-1771 Msa1359840:intron 35.0%
TGAATTGCAGCTAGATGATT+GGG - tig0016775:1753-1772 Msa1359840:intron 35.0%
GCACAAAAACCTATTCCAAA+TGG - tig0016775:1808-1827 Msa1359840:intron 35.0%
GATTCATCTTCTCTTCTTGT+TGG + tig0016775:1987-2006 Msa1359840:intergenic 35.0%
! TCGATTTTGAACACAGTAAC+AGG - tig0016775:2060-2079 Msa1359840:intron 35.0%
! CGATTTTGAACACAGTAACA+GGG - tig0016775:2061-2080 Msa1359840:intron 35.0%
TGTCCAATTGACATAATGTG+GGG + tig0016775:2155-2174 Msa1359840:intergenic 35.0%
GTGTCCAATTGACATAATGT+GGG + tig0016775:2156-2175 Msa1359840:intergenic 35.0%
AGTGTCCAATTGACATAATG+TGG + tig0016775:2157-2176 Msa1359840:intergenic 35.0%
ATTGGACACTTCCGTTATTA+CGG - tig0016775:2167-2186 Msa1359840:CDS 35.0%
!!! GCTAGTTTTCTCCGTAATAA+CGG + tig0016775:2181-2200 Msa1359840:intergenic 35.0%
TTTGGATTCCAACAATGAAC+CGG - tig0016775:2372-2391 Msa1359840:intron 35.0%
TTTCCTTCTAACTTCCTATC+CGG + tig0016775:2394-2413 Msa1359840:intergenic 35.0%
TGTAATAGTCAAAGTGCATG+TGG - tig0016775:2427-2446 Msa1359840:intron 35.0%
AAAGTGCATGTGGTGTAAAT+AGG - tig0016775:2437-2456 Msa1359840:intron 35.0%
GGAGATAAAGTAGTGAATGA+AGG - tig0016775:2577-2596 Msa1359840:CDS 35.0%
! ATGTGGCTAAAAGCATATGT+TGG + tig0016775:2666-2685 Msa1359840:intergenic 35.0%
TTGTTTGCAATGTTAGGCTT+TGG - tig0016775:2730-2749 Msa1359840:five_prime_UTR 35.0%
! CATTGATGTGGTTAGCTAAA+AGG + tig0016775:2776-2795 Msa1359840:intergenic 35.0%
TCTCAATAAACGGTAGACAT+GGG + tig0016775:461-480 Msa1359840:intergenic 35.0%
TTCTCAATAAACGGTAGACA+TGG + tig0016775:462-481 Msa1359840:intergenic 35.0%
TATAGCTAGGTTGTAGAAGA+AGG + tig0016775:560-579 Msa1359840:intergenic 35.0%
TATCTATGTCGTAAAGTAGC+TGG - tig0016775:716-735 Msa1359840:three_prime_UTR 35.0%
! TGTGTAGGTAAGGCAATTTT+TGG - tig0016775:917-936 Msa1359840:CDS 35.0%
TTTGGATACTTCCTATCTCT+TGG + tig0016775:968-987 Msa1359840:intergenic 35.0%
!! AGAGATAGGAAGTATCCAAA+TGG - tig0016775:968-987 Msa1359840:CDS 35.0%
!! GAGATAGGAAGTATCCAAAT+GGG - tig0016775:969-988 Msa1359840:CDS 35.0%
! TATGTTGGTAAAGCTCCTAA+AGG - tig0016775:1100-1119 Msa1359840:CDS 35.0%
!!! CAATTAGTTTTGGTGCCTTT+AGG + tig0016775:1118-1137 Msa1359840:intergenic 35.0%
!! CTAAAGGCACCAAAACTAAT+TGG - tig0016775:1116-1135 Msa1359840:CDS 35.0%
CTAGGCTGATGATTTGAAAA+TGG - tig0016775:1330-1349 Msa1359840:CDS 35.0%
CAGTAAAAGGTCAAAAACAG+AGG + tig0016775:1666-1685 Msa1359840:intergenic 35.0%
TTGAATTGCAGCTAGATGAT+TGG - tig0016775:1752-1771 Msa1359840:intron 35.0%
TGAATTGCAGCTAGATGATT+GGG - tig0016775:1753-1772 Msa1359840:intron 35.0%
GCACAAAAACCTATTCCAAA+TGG - tig0016775:1808-1827 Msa1359840:intron 35.0%
GATTCATCTTCTCTTCTTGT+TGG + tig0016775:1987-2006 Msa1359840:intergenic 35.0%
! TCGATTTTGAACACAGTAAC+AGG - tig0016775:2060-2079 Msa1359840:intron 35.0%
! CGATTTTGAACACAGTAACA+GGG - tig0016775:2061-2080 Msa1359840:intron 35.0%
TGTCCAATTGACATAATGTG+GGG + tig0016775:2155-2174 Msa1359840:intergenic 35.0%
GTGTCCAATTGACATAATGT+GGG + tig0016775:2156-2175 Msa1359840:intergenic 35.0%
AGTGTCCAATTGACATAATG+TGG + tig0016775:2157-2176 Msa1359840:intergenic 35.0%
ATTGGACACTTCCGTTATTA+CGG - tig0016775:2167-2186 Msa1359840:CDS 35.0%
!!! GCTAGTTTTCTCCGTAATAA+CGG + tig0016775:2181-2200 Msa1359840:intergenic 35.0%
TTTGGATTCCAACAATGAAC+CGG - tig0016775:2372-2391 Msa1359840:intron 35.0%
TTTCCTTCTAACTTCCTATC+CGG + tig0016775:2394-2413 Msa1359840:intergenic 35.0%
TGTAATAGTCAAAGTGCATG+TGG - tig0016775:2427-2446 Msa1359840:intron 35.0%
AAAGTGCATGTGGTGTAAAT+AGG - tig0016775:2437-2456 Msa1359840:intron 35.0%
GGAGATAAAGTAGTGAATGA+AGG - tig0016775:2577-2596 Msa1359840:CDS 35.0%
! ATGTGGCTAAAAGCATATGT+TGG + tig0016775:2666-2685 Msa1359840:intergenic 35.0%
TTGTTTGCAATGTTAGGCTT+TGG - tig0016775:2730-2749 Msa1359840:five_prime_UTR 35.0%
! CATTGATGTGGTTAGCTAAA+AGG + tig0016775:2776-2795 Msa1359840:intergenic 35.0%
CTCAATAAACGGTAGACATG+GGG + tig0016775:460-479 Msa0021260:intergenic 40.0%
GGTAAACTCAATTGTGCAAG+AGG + tig0016775:650-669 Msa1359840:intergenic 40.0%
ACAAGAAGCTCTTCATCAGT+GGG + tig0016775:692-711 Msa1359840:intergenic 40.0%
AACAAGAAGCTCTTCATCAG+TGG + tig0016775:693-712 Msa1359840:intergenic 40.0%
ATCTCTACAAATTCGACCCA+TGG - tig0016775:774-793 Msa1359840:three_prime_UTR 40.0%
TCTCTACAAATTCGACCCAT+GGG - tig0016775:775-794 Msa1359840:three_prime_UTR 40.0%
! GTTGGTGAAGTTAACTCACT+TGG + tig0016775:806-825 Msa1359840:intergenic 40.0%
CAAATAGAGTAGCTGGATCT+GGG - tig0016775:999-1018 Msa1359840:CDS 40.0%
TATAATCTTGTCTGTTCCGG+TGG + tig0016775:1035-1054 Msa1359840:intergenic 40.0%
CTTGACTCTTCACGAAACAA+CGG - tig0016775:1160-1179 Msa1359840:CDS 40.0%
AAGCAATGGTCGTCAATTTG+TGG + tig0016775:1922-1941 Msa1359840:intergenic 40.0%
ACAGTAACAGGGTTTCAAGA+CGG - tig0016775:2072-2091 Msa1359840:intron 40.0%
TTTCAAGACGGTCAAACTCA+AGG - tig0016775:2084-2103 Msa1359840:CDS 40.0%
TGTCCCCACATTATGTCAAT+TGG - tig0016775:2149-2168 Msa1359840:CDS 40.0%
! AACCAAGTTGAGAATTCGTC+TGG - tig0016775:2252-2271 Msa1359840:CDS 40.0%
! ACCAAGTTGAGAATTCGTCT+GGG - tig0016775:2253-2272 Msa1359840:CDS 40.0%
AGGTATGGGATACACTAATC+CGG - tig0016775:2308-2327 Msa1359840:CDS 40.0%
TGTTGGAATCCAAATCCAAC+CGG + tig0016775:2366-2385 Msa1359840:intergenic 40.0%
ATTCCAACAATGAACCGGAT+AGG - tig0016775:2377-2396 Msa1359840:intron 40.0%
! TAAATAGGCGGGGATTCTTT+TGG - tig0016775:2452-2471 Msa1359840:intron 40.0%
CATATCTCTAGCCGAAATTG+AGG + tig0016775:2518-2537 Msa1359840:intergenic 40.0%
CTCAATTTCGGCTAGAGATA+TGG - tig0016775:2516-2535 Msa1359840:CDS 40.0%
AATTTCGGCTAGAGATATGG+AGG - tig0016775:2519-2538 Msa1359840:CDS 40.0%
TTCACTACTTTATCTCCCCA+TGG + tig0016775:2574-2593 Msa1359840:intergenic 40.0%
AGAACAAAACGCGATTCATG+TGG + tig0016775:2683-2702 Msa1359840:intergenic 40.0%
CTCAATAAACGGTAGACATG+GGG + tig0016775:460-479 Msa1359840:intergenic 40.0%
GGTAAACTCAATTGTGCAAG+AGG + tig0016775:650-669 Msa1359840:intergenic 40.0%
ACAAGAAGCTCTTCATCAGT+GGG + tig0016775:692-711 Msa1359840:intergenic 40.0%
AACAAGAAGCTCTTCATCAG+TGG + tig0016775:693-712 Msa1359840:intergenic 40.0%
ATCTCTACAAATTCGACCCA+TGG - tig0016775:774-793 Msa1359840:three_prime_UTR 40.0%
TCTCTACAAATTCGACCCAT+GGG - tig0016775:775-794 Msa1359840:three_prime_UTR 40.0%
! GTTGGTGAAGTTAACTCACT+TGG + tig0016775:806-825 Msa1359840:intergenic 40.0%
CAAATAGAGTAGCTGGATCT+GGG - tig0016775:999-1018 Msa1359840:CDS 40.0%
TATAATCTTGTCTGTTCCGG+TGG + tig0016775:1035-1054 Msa1359840:intergenic 40.0%
CTTGACTCTTCACGAAACAA+CGG - tig0016775:1160-1179 Msa1359840:CDS 40.0%
AAGCAATGGTCGTCAATTTG+TGG + tig0016775:1922-1941 Msa1359840:intergenic 40.0%
ACAGTAACAGGGTTTCAAGA+CGG - tig0016775:2072-2091 Msa1359840:intron 40.0%
TTTCAAGACGGTCAAACTCA+AGG - tig0016775:2084-2103 Msa1359840:CDS 40.0%
TGTCCCCACATTATGTCAAT+TGG - tig0016775:2149-2168 Msa1359840:CDS 40.0%
! AACCAAGTTGAGAATTCGTC+TGG - tig0016775:2252-2271 Msa1359840:CDS 40.0%
! ACCAAGTTGAGAATTCGTCT+GGG - tig0016775:2253-2272 Msa1359840:CDS 40.0%
AGGTATGGGATACACTAATC+CGG - tig0016775:2308-2327 Msa1359840:CDS 40.0%
TGTTGGAATCCAAATCCAAC+CGG + tig0016775:2366-2385 Msa1359840:intergenic 40.0%
ATTCCAACAATGAACCGGAT+AGG - tig0016775:2377-2396 Msa1359840:intron 40.0%
! TAAATAGGCGGGGATTCTTT+TGG - tig0016775:2452-2471 Msa1359840:intron 40.0%
CATATCTCTAGCCGAAATTG+AGG + tig0016775:2518-2537 Msa1359840:intergenic 40.0%
CTCAATTTCGGCTAGAGATA+TGG - tig0016775:2516-2535 Msa1359840:CDS 40.0%
AATTTCGGCTAGAGATATGG+AGG - tig0016775:2519-2538 Msa1359840:CDS 40.0%
TTCACTACTTTATCTCCCCA+TGG + tig0016775:2574-2593 Msa1359840:intergenic 40.0%
AGAACAAAACGCGATTCATG+TGG + tig0016775:2683-2702 Msa1359840:intergenic 40.0%
AGCTAGGTTGTAGAAGAAGG+TGG + tig0016775:557-576 Msa0021260:intergenic 45.0%
GCACAATTGAGTTTACCTCC+TGG - tig0016775:653-672 Msa1359840:three_prime_UTR 45.0%
GGGTAAAATCGAAAACCAGG+AGG + tig0016775:671-690 Msa1359840:intergenic 45.0%
GTGGGGTAAAATCGAAAACC+AGG + tig0016775:674-693 Msa1359840:intergenic 45.0%
CAAGAAGCTCTTCATCAGTG+GGG + tig0016775:691-710 Msa1359840:intergenic 45.0%
ACTCACTTGGAAGAACCCAT+GGG + tig0016775:793-812 Msa1359840:intergenic 45.0%
AACTCACTTGGAAGAACCCA+TGG + tig0016775:794-813 Msa1359840:intergenic 45.0%
!! GGAAGTATCCAAATGGGACT+AGG - tig0016775:975-994 Msa1359840:CDS 45.0%
CTATTTGGCCTAGTCCCATT+TGG + tig0016775:986-1005 Msa1359840:intergenic 45.0%
ACTAGGCCAAATAGAGTAGC+TGG - tig0016775:992-1011 Msa1359840:CDS 45.0%
CCAGATCCAGCTACTCTATT+TGG + tig0016775:1001-1020 Msa1359840:intergenic 45.0%
CCAAATAGAGTAGCTGGATC+TGG - tig0016775:998-1017 Msa1359840:CDS 45.0%
! GAAACGACGCCATTTGGAAT+AGG + tig0016775:1820-1839 Msa1359840:intergenic 45.0%
CTACTTGAAACGACGCCATT+TGG + tig0016775:1826-1845 Msa1359840:intergenic 45.0%
ACGTGTCAACTCGCTAAGAA+CGG - tig0016775:1951-1970 Msa1359840:intron 45.0%
GACATAATGTGGGGACAGAA+GGG + tig0016775:2146-2165 Msa1359840:intergenic 45.0%
TGACATAATGTGGGGACAGA+AGG + tig0016775:2147-2166 Msa1359840:intergenic 45.0%
CTTTGAACCTCCTCTTCAGT+CGG + tig0016775:2219-2238 Msa1359840:intergenic 45.0%
ACTGAAGAGGAGGTTCAAAG+TGG - tig0016775:2219-2238 Msa1359840:CDS 45.0%
CTGAAGAGGAGGTTCAAAGT+GGG - tig0016775:2220-2239 Msa1359840:CDS 45.0%
TGAAGAGGAGGTTCAAAGTG+GGG - tig0016775:2221-2240 Msa1359840:CDS 45.0%
ACCCAGACGAATTCTCAACT+TGG + tig0016775:2257-2276 Msa1359840:intergenic 45.0%
!!! TCGTCTGGGTTTTTTCAACG+CGG - tig0016775:2267-2286 Msa1359840:CDS 45.0%
ACCGGGTATCTAAACCCAAA+CGG + tig0016775:2339-2358 Msa1359840:intergenic 45.0%
GTTTAGATACCCGGTTCAAC+CGG - tig0016775:2344-2363 Msa1359840:intron 45.0%
CTTCCTATCCGGTTCATTGT+TGG + tig0016775:2383-2402 Msa1359840:intergenic 45.0%
GAACCGGATAGGAAGTTAGA+AGG - tig0016775:2388-2407 Msa1359840:intron 45.0%
GTGCATGTGGTGTAAATAGG+CGG - tig0016775:2440-2459 Msa1359840:intron 45.0%
TGCATGTGGTGTAAATAGGC+GGG - tig0016775:2441-2460 Msa1359840:intron 45.0%
AGCTAGGTTGTAGAAGAAGG+TGG + tig0016775:557-576 Msa1359840:intergenic 45.0%
GCACAATTGAGTTTACCTCC+TGG - tig0016775:653-672 Msa1359840:three_prime_UTR 45.0%
GGGTAAAATCGAAAACCAGG+AGG + tig0016775:671-690 Msa1359840:intergenic 45.0%
GTGGGGTAAAATCGAAAACC+AGG + tig0016775:674-693 Msa1359840:intergenic 45.0%
CAAGAAGCTCTTCATCAGTG+GGG + tig0016775:691-710 Msa1359840:intergenic 45.0%
ACTCACTTGGAAGAACCCAT+GGG + tig0016775:793-812 Msa1359840:intergenic 45.0%
AACTCACTTGGAAGAACCCA+TGG + tig0016775:794-813 Msa1359840:intergenic 45.0%
!! GGAAGTATCCAAATGGGACT+AGG - tig0016775:975-994 Msa1359840:CDS 45.0%
CTATTTGGCCTAGTCCCATT+TGG + tig0016775:986-1005 Msa1359840:intergenic 45.0%
ACTAGGCCAAATAGAGTAGC+TGG - tig0016775:992-1011 Msa1359840:CDS 45.0%
CCAGATCCAGCTACTCTATT+TGG + tig0016775:1001-1020 Msa1359840:intergenic 45.0%
CCAAATAGAGTAGCTGGATC+TGG - tig0016775:998-1017 Msa1359840:CDS 45.0%
! GAAACGACGCCATTTGGAAT+AGG + tig0016775:1820-1839 Msa1359840:intergenic 45.0%
CTACTTGAAACGACGCCATT+TGG + tig0016775:1826-1845 Msa1359840:intergenic 45.0%
ACGTGTCAACTCGCTAAGAA+CGG - tig0016775:1951-1970 Msa1359840:intron 45.0%
GACATAATGTGGGGACAGAA+GGG + tig0016775:2146-2165 Msa1359840:intergenic 45.0%
TGACATAATGTGGGGACAGA+AGG + tig0016775:2147-2166 Msa1359840:intergenic 45.0%
CTTTGAACCTCCTCTTCAGT+CGG + tig0016775:2219-2238 Msa1359840:intergenic 45.0%
ACTGAAGAGGAGGTTCAAAG+TGG - tig0016775:2219-2238 Msa1359840:CDS 45.0%
CTGAAGAGGAGGTTCAAAGT+GGG - tig0016775:2220-2239 Msa1359840:CDS 45.0%
TGAAGAGGAGGTTCAAAGTG+GGG - tig0016775:2221-2240 Msa1359840:CDS 45.0%
ACCCAGACGAATTCTCAACT+TGG + tig0016775:2257-2276 Msa1359840:intergenic 45.0%
!!! TCGTCTGGGTTTTTTCAACG+CGG - tig0016775:2267-2286 Msa1359840:CDS 45.0%
ACCGGGTATCTAAACCCAAA+CGG + tig0016775:2339-2358 Msa1359840:intergenic 45.0%
GTTTAGATACCCGGTTCAAC+CGG - tig0016775:2344-2363 Msa1359840:intron 45.0%
CTTCCTATCCGGTTCATTGT+TGG + tig0016775:2383-2402 Msa1359840:intergenic 45.0%
GAACCGGATAGGAAGTTAGA+AGG - tig0016775:2388-2407 Msa1359840:intron 45.0%
GTGCATGTGGTGTAAATAGG+CGG - tig0016775:2440-2459 Msa1359840:intron 45.0%
TGCATGTGGTGTAAATAGGC+GGG - tig0016775:2441-2460 Msa1359840:intron 45.0%
!!! AACAATTTTTTTTAAAAAAT+TGG - tig0016775:1375-1394 Msa1359840:CDS 5.0%
!!! ACAATTTTTTTTAAAAAATT+GGG - tig0016775:1376-1395 Msa1359840:CDS 5.0%
!!! TATTTATTATTTTTTTAAGA+AGG + tig0016775:1485-1504 Msa1359840:intergenic 5.0%
!!! AACAATTTTTTTTAAAAAAT+TGG - tig0016775:1375-1394 Msa1359840:CDS 5.0%
!!! ACAATTTTTTTTAAAAAATT+GGG - tig0016775:1376-1395 Msa1359840:CDS 5.0%
!!! TATTTATTATTTTTTTAAGA+AGG + tig0016775:1485-1504 Msa1359840:intergenic 5.0%
GAGTAGCTGGATCTGGGTAT+TGG - tig0016775:1005-1024 Msa1359840:CDS 50.0%
!! TCTGGGTATTGGAAAGCCAC+CGG - tig0016775:1016-1035 Msa1359840:CDS 50.0%
GACTCTTCACGAAACAACGG+TGG - tig0016775:1163-1182 Msa1359840:CDS 50.0%
TTCAAGAACGTCGTCGAGGT+GGG + tig0016775:1893-1912 Msa1359840:intergenic 50.0%
ATTCAAGAACGTCGTCGAGG+TGG + tig0016775:1894-1913 Msa1359840:intergenic 50.0%
GTGATTCAAGAACGTCGTCG+AGG + tig0016775:1897-1916 Msa1359840:intergenic 50.0%
! GTTCTTAGCGAGTTGACACG+TGG + tig0016775:1952-1971 Msa1359840:intergenic 50.0%
TGGGGACAGAAGGGACATAA+AGG + tig0016775:2137-2156 Msa1359840:intergenic 50.0%
ACTAATCCGGTTGACCCGTT+TGG - tig0016775:2321-2340 Msa1359840:CDS 50.0%
CTAATCCGGTTGACCCGTTT+GGG - tig0016775:2322-2341 Msa1359840:CDS 50.0%
CTAAACCCAAACGGGTCAAC+CGG + tig0016775:2330-2349 Msa1359840:intergenic 50.0%
CCGGGTATCTAAACCCAAAC+GGG + tig0016775:2338-2357 Msa1359840:intergenic 50.0%
! CCCGTTTGGGTTTAGATACC+CGG - tig0016775:2335-2354 Msa1359840:intron 50.0%
CAAATCCAACCGGTTGAACC+GGG + tig0016775:2356-2375 Msa1359840:intergenic 50.0%
CCAAATCCAACCGGTTGAAC+CGG + tig0016775:2357-2376 Msa1359840:intergenic 50.0%
GCATGTGGTGTAAATAGGCG+GGG - tig0016775:2442-2461 Msa1359840:intron 50.0%
TTCGGCTAGAGATATGGAGG+TGG - tig0016775:2522-2541 Msa1359840:CDS 50.0%
GAGTAGCTGGATCTGGGTAT+TGG - tig0016775:1005-1024 Msa1359840:CDS 50.0%
!! TCTGGGTATTGGAAAGCCAC+CGG - tig0016775:1016-1035 Msa1359840:CDS 50.0%
GACTCTTCACGAAACAACGG+TGG - tig0016775:1163-1182 Msa1359840:CDS 50.0%
TTCAAGAACGTCGTCGAGGT+GGG + tig0016775:1893-1912 Msa1359840:intergenic 50.0%
ATTCAAGAACGTCGTCGAGG+TGG + tig0016775:1894-1913 Msa1359840:intergenic 50.0%
GTGATTCAAGAACGTCGTCG+AGG + tig0016775:1897-1916 Msa1359840:intergenic 50.0%
! GTTCTTAGCGAGTTGACACG+TGG + tig0016775:1952-1971 Msa1359840:intergenic 50.0%
TGGGGACAGAAGGGACATAA+AGG + tig0016775:2137-2156 Msa1359840:intergenic 50.0%
ACTAATCCGGTTGACCCGTT+TGG - tig0016775:2321-2340 Msa1359840:CDS 50.0%
CTAATCCGGTTGACCCGTTT+GGG - tig0016775:2322-2341 Msa1359840:CDS 50.0%
CTAAACCCAAACGGGTCAAC+CGG + tig0016775:2330-2349 Msa1359840:intergenic 50.0%
CCGGGTATCTAAACCCAAAC+GGG + tig0016775:2338-2357 Msa1359840:intergenic 50.0%
! CCCGTTTGGGTTTAGATACC+CGG - tig0016775:2335-2354 Msa1359840:intron 50.0%
CAAATCCAACCGGTTGAACC+GGG + tig0016775:2356-2375 Msa1359840:intergenic 50.0%
CCAAATCCAACCGGTTGAAC+CGG + tig0016775:2357-2376 Msa1359840:intergenic 50.0%
GCATGTGGTGTAAATAGGCG+GGG - tig0016775:2442-2461 Msa1359840:intron 50.0%
TTCGGCTAGAGATATGGAGG+TGG - tig0016775:2522-2541 Msa1359840:CDS 50.0%
ACGAAACAACGGTGGCACCA+AGG - tig0016775:1171-1190 Msa1359840:CDS 55.0%
CACGTGGCAGCTTGAAGCAA+TGG + tig0016775:1936-1955 Msa1359840:intergenic 55.0%
TCCTCTTCAGTCGGATGCAC+GGG + tig0016775:2210-2229 Msa1359840:intergenic 55.0%
CTCCTCTTCAGTCGGATGCA+CGG + tig0016775:2211-2230 Msa1359840:intergenic 55.0%
AGATACCCGGTTCAACCGGT+TGG - tig0016775:2348-2367 Msa1359840:intron 55.0%
CCGGTTCAACCGGTTGGATT+TGG - tig0016775:2354-2373 Msa1359840:intron 55.0%
ACGAAACAACGGTGGCACCA+AGG - tig0016775:1171-1190 Msa1359840:CDS 55.0%
CACGTGGCAGCTTGAAGCAA+TGG + tig0016775:1936-1955 Msa1359840:intergenic 55.0%
TCCTCTTCAGTCGGATGCAC+GGG + tig0016775:2210-2229 Msa1359840:intergenic 55.0%
CTCCTCTTCAGTCGGATGCA+CGG + tig0016775:2211-2230 Msa1359840:intergenic 55.0%
AGATACCCGGTTCAACCGGT+TGG - tig0016775:2348-2367 Msa1359840:intron 55.0%
CCGGTTCAACCGGTTGGATT+TGG - tig0016775:2354-2373 Msa1359840:intron 55.0%
ACCCGTGCATCCGACTGAAG+AGG - tig0016775:2206-2225 Msa1359840:CDS 60.0%
CGTGCATCCGACTGAAGAGG+AGG - tig0016775:2209-2228 Msa1359840:CDS 60.0%
ACCCGTGCATCCGACTGAAG+AGG - tig0016775:2206-2225 Msa1359840:CDS 60.0%
CGTGCATCCGACTGAAGAGG+AGG - tig0016775:2209-2228 Msa1359840:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0016775 gene 429 2844 429 ID=Msa1359840;Name=Msa1359840
tig0016775 mRNA 429 2844 429 ID=Msa1359840-mRNA-1;Parent=Msa1359840;Name=Msa1359840-mRNA-1;_AED=0.05;_eAED=0.05;_QI=191|1|1|1|1|1|3|455|360
tig0016775 exon 429 1510 429 ID=Msa1359840-mRNA-1:exon:11590;Parent=Msa1359840-mRNA-1
tig0016775 exon 2081 2349 2081 ID=Msa1359840-mRNA-1:exon:11589;Parent=Msa1359840-mRNA-1
tig0016775 exon 2467 2844 2467 ID=Msa1359840-mRNA-1:exon:11588;Parent=Msa1359840-mRNA-1
tig0016775 five_prime_UTR 2654 2844 2654 ID=Msa1359840-mRNA-1:five_prime_utr;Parent=Msa1359840-mRNA-1
tig0016775 CDS 2467 2653 2467 ID=Msa1359840-mRNA-1:cds;Parent=Msa1359840-mRNA-1
tig0016775 CDS 2081 2349 2081 ID=Msa1359840-mRNA-1:cds;Parent=Msa1359840-mRNA-1
tig0016775 CDS 884 1510 884 ID=Msa1359840-mRNA-1:cds;Parent=Msa1359840-mRNA-1
tig0016775 three_prime_UTR 429 883 429 ID=Msa1359840-mRNA-1:three_prime_utr;Parent=Msa1359840-mRNA-1
Gene Sequence

>Msa1359840

ATGATAATGGGAATTCAAGACAAAGATCCTCTTGCACAATTGAGTTTACCTCCTGGTTTTCGATTTTACCCCACTGATGAAGAGCTTCTTGTTCAATATCTATGTCGTAAAGTAGCTGGTCATCATTTTTCTCTTCAAATCATTGCTGAAATTGATCTCTACAAATTCGACCCATGGGTTCTTCCAAGTAAGGCAATTTTTGGTGAGAAAGAATGGTATTTCTTTAGTCCAAGAGATAGGAAGTATCCAAATGGGACTAGGCCAAATAGAGTAGCTGGATCTGGGTATTGGAAAGCCACCGGAACAGACAAGATTATAACAAATGAAGGTAGAAAAGTTGGTATAAAAAAAGCACTTGTTTTTTATGTTGGTAAAGCTCCTAAAGGCACCAAAACTAATTGGATTATGCATGAGTATCGACTACTTGACTCTTCACGAAACAACGGTGGCACCAAGCTAGATGATTGGGTTCTATGTCGTATCTACAAGAAAAATTCAAGTGCACAAAAACCTATTCCAAATGGCGTCGTTTCAAGTAGAGAATACACTCAATATAGCAACGGTTCATCGTCTTCTTCATCATCCCACCTCGACGACGTTCTTGAATCACTTCCACAAATTGACGACCATTGCTTCAAGCTGCCACGTGTCAACTCGCTAAGAACGGCGCAACATCACCAACAAGAAGAGAAGATGAATCTTCAAAATTTAAATGCTGCAAATAACAATTTCATGGATTGGTCTAATTCATCATCGATTTTGAACACAGTAACAGGGTTTCAAGACGGTCAAACTCAAGGAATGATGAATTTTAGTGGTTGCAATGACCTTTATGTCCCTTCTGTCCCCACATTATGTCAATTGGACACTTCCGTTATTACGGAGAAAACTAGCAAGATACCCGTGCATCCGACTGAAGAGGAGGTTCAAAGTGGGGCGAGAGCAAACCAAGTTGAGAATTCGTCTGGGTTTTTTCAACGCGGTTCAAATGATTTTAATCAAGGTATGGGATACACTAATCCGGTTGACCCGTTTGGGTTTAGATACCCGGTTCAACCGGTTGGATTTGGATTCCAACAATGA
Protein sequence

>Msa1359840

MIMGIQDKDPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLQIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGTRPNRVAGSGYWKATGTDKIITNEGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLLDSSRNNGGTKLDDWVLCRIYKKNSSAQKPIPNGVVSSREYTQYSNGSSSSSSSHLDDVLESLPQIDDHCFKLPRVNSLRTAQHHQQEEKMNLQNLNAANNNFMDWSNSSSILNTVTGFQDGQTQGMMNFSGCNDLYVPSVPTLCQLDTSVITEKTSKIPVHPTEEEVQSGARANQVENSSGFFQRGSNDFNQGMGYTNPVDPFGFRYPVQPVGFGFQQ*