AlfalfaGEDB | Msa1362610

M. sativa cultivar zhongmu-4 / Msa1362610

KEGG: -
GO: GO:0003674 GO:0005198 GO:0005199 GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0009505 GO:0009506 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944
PFAM: PF13855.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1362610	XP_003630813.1	87.500	728	60	5	1	713	1	712	0.0	823

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1362610	sp\|Q9LHF1\|LRX4_ARATH	73.874	333	86	1	29	360	64	396	0.0	540

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1362610	G7L8Y9	87.500	728	60	5	1	713	1	712	0.0	823

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0033780	Msa1362610	0.805267	1.449763e-49	-8.615850e-47
Msa0128570	Msa1362610	0.833760	4.431253e-56	-8.615850e-47
Msa0174650	Msa1362610	0.833671	4.664769e-56	-8.615850e-47
Msa0349550	Msa1362610	0.861439	1.024926e-63	-8.615850e-47
Msa0466520	Msa1362610	0.809568	1.774107e-50	-8.615850e-47
Msa0524320	Msa1362610	0.823994	1.026232e-53	-8.615850e-47
Msa0524430	Msa1362610	0.819630	1.050021e-52	-8.615850e-47
Msa0989510	Msa1362610	0.893984	3.774717e-75	-8.615850e-47
Msa0989520	Msa1362610	0.846391	2.236937e-59	-8.615850e-47
Msa1188340	Msa1362610	0.804000	2.664810e-49	-8.615850e-47

Showing 1 to 10 of 15 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1362610	MtrunA17_Chr8g0390681	87.500	728	60	5	1	713	1	712	0.0	823
Msa1362610	MtrunA17_Chr6g0485141	70.278	360	106	1	4	362	42	401	0.0	538
Msa1362610	MtrunA17_Chr1g0204911	61.420	324	124	1	38	360	34	357	4.31e-141	422
Msa1362610	MtrunA17_Chr1g0204931	60.185	324	128	1	38	360	34	357	5.19e-137	408
Msa1362610	MtrunA17_Chr1g0162391	52.217	406	183	5	30	429	278	678	4.29e-134	414
Msa1362610	MtrunA17_Chr4g0040331	57.622	328	134	2	38	360	58	385	1.61e-130	393
Msa1362610	MtrunA17_Chr6g0487391	49.682	314	147	4	38	340	63	376	3.74e-96	304
Msa1362610	MtrunA17_Chr8g0389681	49.673	306	148	3	38	340	56	358	5.36e-93	295
Msa1362610	MtrunA17_Chr1g0153041	44.578	332	178	4	30	355	23	354	1.11e-82	267
Msa1362610	MtrunA17_Chr4g0044441	43.161	329	158	4	32	355	55	359	3.29e-66	224

Showing 1 to 10 of 980 entries

Previous1 2 3 4 5…98Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1362610	AT3G24480.1	73.874	333	86	1	29	360	64	396	0.0	540
Msa1362610	AT4G13340.1	73.746	339	88	1	23	360	50	388	0.0	538
Msa1362610	AT1G62440.1	62.941	340	121	2	29	363	43	382	1.41e-146	447
Msa1362610	AT5G25550.1	58.133	332	138	1	30	360	42	373	3.44e-145	431
Msa1362610	AT1G49490.1	58.036	336	137	1	29	360	49	384	2.91e-141	435
Msa1362610	AT4G33970.1	52.018	446	187	9	34	465	81	513	3.55e-141	430
Msa1362610	AT1G49490.2	58.036	336	137	1	29	360	54	389	3.61e-141	435
Msa1362610	AT3G22800.1	63.235	340	116	3	38	375	50	382	3.81e-141	422
Msa1362610	AT3G19020.2	57.738	336	134	2	31	360	64	397	9.98e-137	426
Msa1362610	AT3G19020.1	57.738	336	134	2	31	360	64	397	1.25e-136	426

Showing 1 to 10 of 582 entries

Previous1 2 3 4 5…59Next

Find 282 sgRNAs with CRISPR-Local

Find 628 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAGGTGTTGGATGTGC+TGG	0.535107	tig0017892:-63040	None:intergenic
AACGTAAAGTTCTTAAGATT+AGG	0.457875	tig0017892:-62239	None:intergenic
AACTGTAAATGTAATGAACA+GGG	0.629027	tig0017892:-63345	None:intergenic
AACTTCACAACCAACTGGGT+TGG	0.538627	tig0017892:+61513	Msa1362610:CDS
AAGAAGATGGTGGTCCGGGT+GGG	0.525321	tig0017892:-63213	None:intergenic
AAGAATTAATAGAAAGGAGG+TGG	0.545594	tig0017892:-63463	None:intergenic
AATAACCAGCAATGTCGGCA+TGG	0.628374	tig0017892:-61623	None:intergenic
AATTAATAGAAAGGAGGTGG+TGG	0.514078	tig0017892:-63460	None:intergenic
ACATGTTTCTCCACATCCAC+CGG	0.573015	tig0017892:+63255	Msa1362610:CDS
ACCACAGGAGTTGTTGGAGA+TGG	0.606561	tig0017892:-62872	None:intergenic

Showing 1 to 10 of 282 entries

Previous1 2 3 4 5…29Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CTTACCAGTTCTTAAATTCT+TGG	+	tig0017892:61809-61828	Msa1362610:CDS	30.0%
ATGTCCAAGAATTTAAGAAC+TGG	-	tig0017892:61816-61835	None:intergenic	30.0%
ATTAGGTTCAACGAATTTGA+AGG	+	tig0017892:61834-61853	Msa1362610:CDS	30.0%
TCTTTATCAAACAACTCTCT+TGG	-	tig0017892:61867-61886	None:intergenic	30.0%
TTTGATCTTCCAGAAAATCT+TGG	+	tig0017892:61924-61943	Msa1362610:CDS	30.0%
TATGTTCTCTGGTAAAATTC+CGG	+	tig0017892:62199-62218	Msa1362610:CDS	30.0%
GAATTATATTGAATAGGGGA+AGG	-	tig0017892:63310-63329	None:intergenic	30.0%
TGGGGAATTATATTGAATAG+GGG	-	tig0017892:63314-63333	None:intergenic	30.0%
GTGGGGAATTATATTGAATA+GGG	-	tig0017892:63315-63334	None:intergenic	30.0%
ACTGTAAATGTAATGAACAG+GGG	-	tig0017892:63347-63366	None:intergenic	30.0%

Showing 1 to 10 of 628 entries

Previous1 2 3 4 5…63Next

Chromosome	Type	Strat	End	Strand	Name
tig0017892	gene	61339	63480	61339	ID=Msa1362610;Name=Msa1362610
tig0017892	mRNA	61339	63480	61339	ID=Msa1362610-mRNA-1;Parent=Msa1362610;Name=Msa1362610-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|713
tig0017892	exon	61339	63480	61339	ID=Msa1362610-mRNA-1:exon:13069;Parent=Msa1362610-mRNA-1
tig0017892	CDS	61339	63480	61339	ID=Msa1362610-mRNA-1:cds;Parent=Msa1362610-mRNA-1

Gene Sequence

>Msa1362610

ATGACGAAGAAAACACAAACACTCCTCCTAATTACTCTGCTTCTAACCATAAACACACTCTCCCTCTCAGCCCAAACCATCAACAACCCATCTCTTGTCTTCGAAAACAACCGCATCCAAAATGCTTACATAGCATTACAAGCTTGGAAACAAGCCATTCTCTCTGATCCACTAAACTTCACAACCAACTGGGTTGGATCCAATGTATGCAGCTACACTGGTATTTACTGTGCTCAAGCACTAGATAACCCCAATATACGCACCGTCGCCGGTATTGATCTCAACCATGCCGACATTGCTGGTTATTTACCGGATGAACTCGGTCTTCTAACAGATCTCGCACTTTTCCACATAAACTCCAACAGATTCTGTGGCACTGTACCACACACTTTTGAAAAATTGAAACTTCTCTTTGAATTGGATCTCAGTAACAACAGATTCGCAGGGAAGTTTCCAAATGTTGTTTTACGCTTACCAGTTCTTAAATTCTTGGACATTAGGTTCAACGAATTTGAAGGAACGGTTCCAAGAGAGTTGTTTGATAAAGACCTTGACGCTATTTTCATAAACGACAACCGTTTTGCTTTTGATCTTCCAGAAAATCTTGGTAACTCACCTGTTTCAGTTGTCGTTTTTGCAAACAACAAGTTCCAAGGGTGCATTCCTTCCAGTATAGGAAACATGTCTAACTTAAACGAAATCAATTTCTTGAACAATTTGTTTAAGTCATGTTTGCCTTCTGAGATTGGGTTGTTGAAGAATCTCACAGTTTTTGATGTGGGTTTTAATCAGTTGGTGGGTCCGTTACCGGCTGCTATTGGTGGTGCGGTGAGTTTGGAAGAGCTTAATGTGGCGCATAATATGTTCTCTGGTAAAATTCCGGCAAGTATTTGTATGTTGCCTAATCTTAAGAACTTTACGTTTTCGGATAATTTCTTTACTGGTGAGCCTCCGGCGTGCTTTGGCTTGCCGGCGTCTGATGATAGGAGAAATTGTTTGCCGGCGAGGCCGTTTCAGAAGACGCTTTTGGAATGTGCGTCGTTTTTGTCTAAGCCTGTGGATTGTAAGTCGTTTGGGTGTAAAGCTTTTAATCCTTCTTTGCCTTTGCCGTCGCCGCCGGGAGTTTCACCTTCCTCTCCACCAACGCCGGCAGTGTCACCTTCACCGGGAGGGTCACCTACCTCTCCCTCACCGCCGGGAACGACACCTATTACTCCATCACCGCCAGGAACGACACCTGTCTCTCCAACACCGCCGGGAACGACACCTGTATCTCCACAACCACCGGCAGGTTCACCTACCTCTCCATCACCGCCCGGAACGACACCTATATCTCCAGAACCACCGGCATTGCCACCTAGCACTCCTTCACCTCCGGGAACAACACCTATCTCTCCATCACCGCCGGGAACGACACCTTCCATTCCACCGCCAACACACTCTTCTCCGCCGGGAACACCCAACTCTCCATCACCACCGGGAATGACACCTTCCTCTCCACCGCCAACACACTCTTCTCCACCAGGAAATACACCATCTCCAACAACTCCTGTGGTGTCGCCACCATCTCCTGCTCCTCATTATGGATCATCCCCACCCCCTCATTCCCCTGATTTTTCACCACCACCGGGAACGTCCCCTTCCTCTCCACCAACGCCGGGAACGGTACCTTCCTTTCCACCACCAACACACTCTTCTCCACCAGCACATCCAACACCTCCTTTTGTATCGCCACCCTCACATACTCCAATGCCACCGTCTCATTCACTATATCCACCCCCACCGACAGGTCCTCATTCACCACCATCTCAATCTCCACCTTCTATAGGACCTCCTCCGTCACTATCACCACCACCTTGTGAAGAGCATCCATCCCCACCCGGACCACCATCTTCTTCCACACCAACACCACCAGTACATGTTTCTCCACATCCACCGGTTCAATATACTCCTCCATCACCATCACATCCTTCCCCTATTCAATATAATTCCCCACCACCACCACCCCCTGTTCATTACATTTACAGTTCACCGCCGCCACCAACATTACCGCCTCCACCACCTGCCCCTGCATATGGAGGGCCATTGCCACCTATCGTTGGTCTCCCATACGCTTCGCCTCCACCACCTCCTTTCTATTAA

Protein sequence

>Msa1362610

MTKKTQTLLLITLLLTINTLSLSAQTINNPSLVFENNRIQNAYIALQAWKQAILSDPLNFTTNWVGSNVCSYTGIYCAQALDNPNIRTVAGIDLNHADIAGYLPDELGLLTDLALFHINSNRFCGTVPHTFEKLKLLFELDLSNNRFAGKFPNVVLRLPVLKFLDIRFNEFEGTVPRELFDKDLDAIFINDNRFAFDLPENLGNSPVSVVVFANNKFQGCIPSSIGNMSNLNEINFLNNLFKSCLPSEIGLLKNLTVFDVGFNQLVGPLPAAIGGAVSLEELNVAHNMFSGKIPASICMLPNLKNFTFSDNFFTGEPPACFGLPASDDRRNCLPARPFQKTLLECASFLSKPVDCKSFGCKAFNPSLPLPSPPGVSPSSPPTPAVSPSPGGSPTSPSPPGTTPITPSPPGTTPVSPTPPGTTPVSPQPPAGSPTSPSPPGTTPISPEPPALPPSTPSPPGTTPISPSPPGTTPSIPPPTHSSPPGTPNSPSPPGMTPSSPPPTHSSPPGNTPSPTTPVVSPPSPAPHYGSSPPPHSPDFSPPPGTSPSSPPTPGTVPSFPPPTHSSPPAHPTPPFVSPPSHTPMPPSHSLYPPPPTGPHSPPSQSPPSIGPPPSLSPPPCEEHPSPPGPPSSSTPTPPVHVSPHPPVQYTPPSPSHPSPIQYNSPPPPPPVHYIYSSPPPPTLPPPPPAPAYGGPLPPIVGLPYASPPPPPFY*