AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0033780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0033780 MtrunA17_Chr1g0195271 98.614 505 5 1 1 505 1 503 0.0 1038
Msa0033780 MtrunA17_Chr3g0119821 63.793 464 167 1 37 499 31 494 0.0 623
Msa0033780 MtrunA17_Chr8g0391391 62.581 465 171 2 38 499 27 491 0.0 605
Msa0033780 MtrunA17_Chr3g0145261 59.740 462 183 2 40 498 23 484 0.0 579
Msa0033780 MtrunA17_Chr3g0080171 60.087 461 178 3 41 499 25 481 0.0 562
Msa0033780 MtrunA17_Chr4g0018301 56.332 458 195 2 41 498 45 497 0.0 535
Msa0033780 MtrunA17_Chr4g0018361 57.143 469 186 6 40 498 26 489 0.0 526
Msa0033780 MtrunA17_Chr5g0397201 53.118 465 205 6 38 498 37 492 1.19e-171 493
Msa0033780 MtrunA17_Chr8g0388051 52.220 473 214 7 40 503 27 496 1.09e-167 488
Msa0033780 MtrunA17_Chr3g0119371 49.698 497 223 9 9 496 25 503 3.98e-161 467
Msa0033780 MtrunA17_Chr5g0439311 46.707 501 240 9 10 500 15 498 2.00e-160 465
Msa0033780 MtrunA17_Chr1g0164201 48.509 503 232 10 3 499 1 482 1.05e-149 437
Msa0033780 MtrunA17_Chr4g0038131 47.046 474 240 7 41 505 28 499 3.27e-145 431
Msa0033780 MtrunA17_Chr3g0086311 46.753 462 232 6 41 499 30 480 7.75e-142 416
Msa0033780 MtrunA17_Chr5g0397181 48.507 402 192 7 102 498 1 392 1.50e-130 385
Msa0033780 MtrunA17_Chr3g0142501 41.474 475 260 9 35 498 51 518 4.39e-119 360
Msa0033780 MtrunA17_Chr8g0372031 43.697 476 250 9 35 499 57 525 1.03e-116 354
Msa0033780 MtrunA17_Chr3g0136381 46.648 358 179 4 41 396 30 377 1.16e-113 342
Msa0033780 MtrunA17_Chr2g0291461 41.412 524 261 17 8 499 81 590 5.68e-99 311
Msa0033780 MtrunA17_Chr7g0269571 81.034 174 22 1 343 505 43 216 2.76e-98 296
Msa0033780 MtrunA17_Chr4g0018341 49.286 280 137 2 219 498 2 276 1.10e-96 293
Msa0033780 MtrunA17_Chr5g0444721 44.077 363 194 5 144 498 203 564 3.27e-96 302
Msa0033780 MtrunA17_Chr5g0444721 45.312 192 84 3 2 187 10 186 4.95e-43 160
Msa0033780 MtrunA17_Chr3g0120661 38.015 534 279 19 6 503 79 596 2.05e-91 291
Msa0033780 MtrunA17_Chr3g0126111 35.038 528 287 18 9 498 74 583 3.28e-88 282
Msa0033780 MtrunA17_Chr4g0018351 66.484 182 61 0 41 222 30 211 2.01e-78 244
Msa0033780 MtrunA17_Chr4g0022271 59.286 140 51 2 343 481 20 154 7.58e-52 174
Msa0033780 MtrunA17_Chr1g0164181 43.655 197 104 4 306 496 134 329 4.27e-43 155
Msa0033780 MtrunA17_Chr1g0164181 48.925 186 87 3 81 260 1 184 1.78e-42 154
Msa0033780 MtrunA17_Chr7g0269561 69.512 82 11 1 249 330 25 92 2.39e-32 120
Msa0033780 MtrunA17_Chr4g0072811 36.842 152 90 3 350 499 19 166 1.81e-25 103
Msa0033780 MtrunA17_Chr3g0136371 47.872 94 47 2 396 488 1 93 3.61e-23 94.4
Msa0033780 MtrunA17_Chr5g0397171 74.359 39 10 0 40 78 40 78 4.33e-14 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0033780 AT4G02290.1 76.634 505 116 1 1 505 14 516 0.0 805
Msa0033780 AT1G02800.1 74.553 503 124 2 1 501 1 501 0.0 766
Msa0033780 AT4G02290.2 78.713 404 86 0 102 505 1 404 0.0 674
Msa0033780 AT1G70710.1 61.935 465 176 1 38 501 25 489 0.0 598
Msa0033780 AT1G23210.1 60.691 463 182 0 37 499 24 486 0.0 590
Msa0033780 AT1G22880.1 57.287 494 193 4 9 501 5 481 0.0 564
Msa0033780 AT1G71380.1 56.073 494 201 4 7 499 1 479 0.0 561
Msa0033780 AT4G39010.1 57.692 468 194 3 40 503 28 495 0.0 558
Msa0033780 AT4G39000.1 53.205 468 215 3 35 498 19 486 6.02e-179 512
Msa0033780 AT1G64390.1 52.119 472 214 7 37 499 21 489 1.54e-169 493
Msa0033780 AT4G23560.1 53.548 465 204 5 42 503 24 479 2.21e-169 487
Msa0033780 AT4G38990.2 49.503 503 228 6 5 498 4 489 6.52e-168 484
Msa0033780 AT4G09740.1 52.802 464 207 5 41 501 23 477 1.64e-166 479
Msa0033780 AT1G22880.2 56.858 401 168 2 102 501 1 397 1.81e-165 474
Msa0033780 AT4G11050.2 51.178 467 218 6 40 498 25 489 2.56e-165 479
Msa0033780 AT4G11050.1 51.178 467 218 6 40 498 25 489 9.79e-165 480
Msa0033780 AT4G11050.3 51.178 467 218 6 40 498 25 489 1.17e-164 480
Msa0033780 AT2G32990.1 49.497 497 235 7 9 496 13 502 1.37e-164 476
Msa0033780 AT2G44540.1 49.567 462 221 7 41 496 33 488 1.62e-149 437
Msa0033780 AT2G44570.1 49.893 469 222 8 38 499 30 492 3.39e-148 433
Msa0033780 AT4G39010.2 56.667 360 152 3 40 395 28 387 4.49e-148 429
Msa0033780 AT2G44550.1 49.138 464 223 8 41 498 33 489 1.45e-147 432
Msa0033780 AT3G43860.2 48.701 462 223 6 41 499 34 484 8.63e-147 430
Msa0033780 AT3G43860.1 48.701 462 223 6 41 499 34 484 8.63e-147 430
Msa0033780 AT2G44560.1 49.893 467 222 7 39 499 31 491 1.93e-145 426
Msa0033780 AT1G48930.1 47.335 469 229 7 40 496 29 491 3.04e-134 402
Msa0033780 AT1G19940.2 45.435 460 237 7 41 493 48 500 1.16e-129 387
Msa0033780 AT1G19940.1 45.435 460 237 7 41 493 48 500 1.16e-129 387
Msa0033780 AT1G75680.1 47.033 455 227 7 42 489 58 505 5.38e-129 385
Msa0033780 AT1G22880.3 56.647 346 132 4 9 353 5 333 4.71e-123 363
Msa0033780 AT2G44570.2 47.632 380 187 7 38 411 30 403 1.93e-104 318
Msa0033780 AT4G38990.1 49.412 340 147 3 35 372 17 333 5.34e-104 315
Msa0033780 AT5G49720.1 40.655 519 260 18 14 499 84 587 2.10e-92 294
Msa0033780 AT1G19940.3 44.353 363 192 6 41 396 48 407 2.58e-92 288
Msa0033780 AT4G24260.1 40.937 491 247 16 41 499 108 587 2.44e-90 289
Msa0033780 AT1G65610.1 37.336 533 278 20 6 504 86 596 1.28e-87 281
Msa0033780 AT4G24260.3 38.918 388 198 15 41 396 108 488 2.50e-53 187
Msa0033780 AT4G24260.2 41.509 318 152 12 41 329 108 420 1.02e-51 182

Find 162 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCCCTTCTCACTAAAATTT+TGG 0.161476 1_1:-61572080 None:intergenic
ACCAGAGTAATCACAGTAAA+AGG 0.170221 1_1:-61572267 None:intergenic
CATTAACTTGAATGTAATTT+AGG 0.180687 1_1:-61572446 None:intergenic
ATGTGATTTGGTCAAGTATT+TGG 0.246836 1_1:-61572924 None:intergenic
GCTGAACATTGGATCTTTCC+TGG 0.246957 1_1:-61573222 None:intergenic
GCAGGTGCCACTTTGCTCTT+TGG 0.251884 1_1:+61571212 Msa0033780:five_prime_UTR
CTGTGATTACTCTGGTTATC+AGG 0.254164 1_1:+61572274 Msa0033780:CDS
CTAAATTACATTCAAGTTAA+TGG 0.258488 1_1:+61572447 Msa0033780:CDS
GCACACTCCCTCTGTCTTGC+AGG 0.275228 1_1:+61571194 Msa0033780:five_prime_UTR
TCAATCTTGAAAACACTTCT+TGG 0.276130 1_1:-61571965 None:intergenic
CTACTAGAATGTTGGGATTA+GGG 0.293793 1_1:-61573272 None:intergenic
GCTAAGGTTCTGAGTCTCTT+TGG 0.294218 1_1:-61572980 None:intergenic
GAGTCTCTTTGGTGTTACTA+TGG 0.297437 1_1:-61572969 None:intergenic
AAAACTAACCTGAACATAAA+TGG 0.298563 1_1:-61571802 None:intergenic
TTCGCTTGCTCTTTAATTCC+TGG 0.300283 1_1:+61572702 Msa0033780:CDS
TTACTACCACTATGCTTTCA+TGG 0.301130 1_1:+61571673 Msa0033780:CDS
TCGTAATCTGACCGTTTATC+TGG 0.305225 1_1:-61573333 None:intergenic
AAGGGAGCTTCCCTGATCTT+TGG 0.305493 1_1:-61571439 None:intergenic
CCTACTAGAATGTTGGGATT+AGG 0.337619 1_1:-61573273 None:intergenic
TTCTTTGAAGGCCAAAGATC+AGG 0.342290 1_1:+61571428 Msa0033780:CDS
TTCAAAGAAGAGAATGGATT+TGG 0.342834 1_1:-61571414 None:intergenic
AAATCCATTCTCTTCTTTGA+AGG 0.351496 1_1:+61571416 Msa0033780:CDS
CAAGACATTCTCTGGTTAGA+AGG 0.353740 1_1:-61571458 None:intergenic
CTTGGTGTGTCCATATCTTC+TGG 0.355409 1_1:-61571947 None:intergenic
ATGTTAAACTATGTATGATT+GGG 0.356814 1_1:+61573620 Msa0033780:three_prime_UTR
CACATCCACTAGCTTCTTAC+TGG 0.357156 1_1:+61572892 Msa0033780:CDS
ACCAGCATCTCCAACTTGTT+TGG 0.360579 1_1:+61573440 Msa0033780:three_prime_UTR
AATGTTAAACTATGTATGAT+TGG 0.361900 1_1:+61573619 Msa0033780:three_prime_UTR
TGCTCTTTAATTCCTGGAGC+TGG 0.365264 1_1:+61572708 Msa0033780:CDS
TCATGGAGTGTTATTGAGTT+TGG 0.368140 1_1:+61571690 Msa0033780:CDS
GGAGAAGGAAGAGGAAGGAT+AGG 0.373681 1_1:-61571292 None:intergenic
ATGTACAATGTAGGTTGATT+TGG 0.376793 1_1:+61571596 Msa0033780:intron
TCCAAACACCATTTATGTTC+AGG 0.394784 1_1:+61571794 Msa0033780:CDS
TCCAAACAAGTTGGAGATGC+TGG 0.394971 1_1:-61573441 None:intergenic
GAAGGTGGGAGATGCTAAAA+AGG 0.395703 1_1:+61571904 Msa0033780:intron
GCAGAGTTTGACAACACATT+TGG 0.404186 1_1:+61572486 Msa0033780:CDS
TTGTTAGGATGAGTTGTTGT+GGG 0.416277 1_1:+61572383 Msa0033780:intron
ACCTGAACATAAATGGTGTT+TGG 0.417646 1_1:-61571795 None:intergenic
CTAGTAGGTGCTGTTGTTGG+AGG 0.421002 1_1:+61573288 Msa0033780:CDS
TTGTACCTGCTTCTTGGCTA+AGG 0.424721 1_1:-61572996 None:intergenic
GCTTATCTTGCACACTCATT+CGG 0.425169 1_1:+61573405 Msa0033780:CDS
TTGGGAGAGACCAGAAGATA+TGG 0.426795 1_1:+61571937 Msa0033780:CDS
GAGGACCAGATCAGCATGAT+AGG 0.431517 1_1:+61573307 Msa0033780:CDS
GCTGGTGACAATGTCAAGTT+TGG 0.431994 1_1:+61571636 Msa0033780:CDS
GGCGATGGAGTGGGAAGGCA+TGG 0.435448 1_1:-61571349 None:intergenic
CCTGGGTGTACAGCCATTGA+AGG 0.436838 1_1:-61573204 None:intergenic
GGAAGGATAGGGAAAGGGAA+AGG 0.439572 1_1:-61571280 None:intergenic
TTGGCCTTCAAAGAAGAGAA+TGG 0.439709 1_1:-61571420 None:intergenic
CCCCTGTGGTGTATCCTTTG+TGG 0.441573 1_1:-61573171 None:intergenic
ATTCTAGTAGGTGCTGTTGT+TGG 0.445902 1_1:+61573285 Msa0033780:CDS
CAAGTTAATGGTCAAATCCT+AGG 0.446620 1_1:+61572459 Msa0033780:CDS
GAAGGATAGGGAAAGGGAAA+GGG 0.446693 1_1:-61571279 None:intergenic
TGTTAGGTGGATTACTTGCT+AGG 0.447232 1_1:+61573099 Msa0033780:intron
GTTTGACAACACATTTGGTT+GGG 0.449029 1_1:+61572491 Msa0033780:CDS
TGAGTTTGGTGGGTTGATGA+AGG 0.451134 1_1:+61571704 Msa0033780:CDS
GTGCCACTTTGCTCTTTGGT+TGG 0.453723 1_1:+61571216 Msa0033780:five_prime_UTR
GTTGGAGGGTATTATGATGC+TGG 0.454607 1_1:+61571618 Msa0033780:CDS
CTGAACATTGGATCTTTCCT+GGG 0.455368 1_1:-61573221 None:intergenic
CAAAGTGAGGGTGGTGGCGA+TGG 0.456403 1_1:-61571364 None:intergenic
ACGCACAACAGAATGTGATT+TGG 0.456608 1_1:-61572936 None:intergenic
GGAAACCTATCATGCTGATC+TGG 0.457186 1_1:-61573312 None:intergenic
TATGTTAATGCACCACTTGT+GGG 0.460697 1_1:+61573375 Msa0033780:CDS
TTTAGGAATTTCTAGTTCAA+AGG 0.464717 1_1:+61572640 Msa0033780:intron
TTAGGAATTTCTAGTTCAAA+GGG 0.464908 1_1:+61572641 Msa0033780:intron
AGTTGTTGTGGGGTGCTGCT+TGG 0.467899 1_1:+61572394 Msa0033780:CDS
ATGATAGGTTTCCAGATAAA+CGG 0.470251 1_1:+61573322 Msa0033780:CDS
ATGTCATACATGGTGGGGTA+TGG 0.473593 1_1:+61573138 Msa0033780:CDS
GGGATCATCACTTCCTTCAA+TGG 0.474143 1_1:+61573191 Msa0033780:CDS
GCAGAAGAGGATCCAGCTCC+AGG 0.475179 1_1:-61572720 None:intergenic
ACCATGTATGACATCTTCAA+TGG 0.476433 1_1:-61573129 None:intergenic
CGAATAGCTTCTCTAGCATT+AGG 0.477541 1_1:-61571735 None:intergenic
TGTAGGTTGATTTGGTTGGA+GGG 0.478012 1_1:+61571604 Msa0033780:intron
GGAAGAGGAAGGATAGGGAA+AGG 0.478406 1_1:-61571286 None:intergenic
GGAAAGATCCAATGTTCAGC+AGG 0.479066 1_1:+61573225 Msa0033780:CDS
GAGTAAGAAGGAGAAGGAAG+AGG 0.479741 1_1:-61571301 None:intergenic
GAAGAGGAAGGATAGGGAAA+GGG 0.482475 1_1:-61571285 None:intergenic
GGTGCATTAACATAAGTTGC+TGG 0.482529 1_1:-61573366 None:intergenic
TGAGGGTGGTGGCGATGGAG+TGG 0.482898 1_1:-61571359 None:intergenic
ACAGCACCTACTAGAATGTT+GGG 0.484006 1_1:-61573279 None:intergenic
TGAATGTAATTTAGGTACAT+TGG 0.486981 1_1:-61572438 None:intergenic
CCTAATCCCAACATTCTAGT+AGG 0.487578 1_1:+61573273 Msa0033780:CDS
TGCTAGAGAAGCTATTCGTT+GGG 0.488469 1_1:+61571740 Msa0033780:CDS
CACTGAACCCTGCTGAACAT+TGG 0.488575 1_1:-61573233 None:intergenic
AACAGCACCTACTAGAATGT+TGG 0.493607 1_1:-61573280 None:intergenic
TGGAGTGTTATTGAGTTTGG+TGG 0.494692 1_1:+61571693 Msa0033780:CDS
ATGTAGGTTGATTTGGTTGG+AGG 0.495740 1_1:+61571603 Msa0033780:intron
GGAGTGGGAAGGCATGGGTA+TGG 0.495769 1_1:-61571343 None:intergenic
AGTTTGACAACACATTTGGT+TGG 0.497629 1_1:+61572490 Msa0033780:CDS
TGTCAAACTCTGCAGCTCCT+AGG 0.498646 1_1:-61572476 None:intergenic
GAGGGTGGTGGCGATGGAGT+GGG 0.499968 1_1:-61571358 None:intergenic
TTATGTTAATGCACCACTTG+TGG 0.503544 1_1:+61573374 Msa0033780:CDS
AGCAAGCGAAATTGTCTGAA+TGG 0.506295 1_1:-61572689 None:intergenic
GAGAAGGAAGAGGAAGGATA+GGG 0.507061 1_1:-61571291 None:intergenic
AAAATCCCTCCATGACTACA+AGG 0.507819 1_1:+61572665 Msa0033780:CDS
ATGCTAGAGAAGCTATTCGT+TGG 0.512170 1_1:+61571739 Msa0033780:CDS
GGTTTCAAGACATTGCTGTA+AGG 0.515521 1_1:-61572233 None:intergenic
AGCAAGGATACTTCTTTCAA+AGG 0.517132 1_1:+61572530 Msa0033780:CDS
TACTAGAATGTTGGGATTAG+GGG 0.517279 1_1:-61573271 None:intergenic
CTGAATGGCCCTTGTAGTCA+TGG 0.518588 1_1:-61572674 None:intergenic
AAGAAGGAGAAGGAAGAGGA+AGG 0.521921 1_1:-61571297 None:intergenic
CCAGAGTAATCACAGTAAAA+GGG 0.524276 1_1:-61572266 None:intergenic
CTTCTAACCAGAGAATGTCT+TGG 0.526372 1_1:+61571459 Msa0033780:CDS
CCCATTGAAGATGTCATACA+TGG 0.526434 1_1:+61573128 Msa0033780:CDS
GGTTGGGATAACAAACATGT+TGG 0.527280 1_1:+61572507 Msa0033780:CDS
TGTATCCTTTGTGGATACCT+TGG 0.528138 1_1:-61573162 None:intergenic
AGAAGAGAGTAAGAAGGAGA+AGG 0.528362 1_1:-61571307 None:intergenic
AAGATTGATGCAAATGCACC+TGG 0.531369 1_1:+61571980 Msa0033780:CDS
AGTGTGCTCTGTTTAATGCT+TGG 0.531592 1_1:-61571178 None:intergenic
TTTAGTGAGAAGGGCTATCA+GGG 0.533210 1_1:+61572087 Msa0033780:CDS
GAGTTTGGTGGGTTGATGAA+GGG 0.533504 1_1:+61571705 Msa0033780:CDS
TCAGATTCATCCAAACAAGT+TGG 0.535707 1_1:-61573450 None:intergenic
CCATGTATGACATCTTCAAT+GGG 0.535756 1_1:-61573128 None:intergenic
CTGGTCTCTCCCAACAAGCA+TGG 0.538685 1_1:-61571928 None:intergenic
AAGAAGAGAAGAGAGTAAGA+AGG 0.540955 1_1:-61571313 None:intergenic
TCTTTGAAGGCCAAAGATCA+GGG 0.542600 1_1:+61571429 Msa0033780:CDS
ACAATGTAGGTTGATTTGGT+TGG 0.544250 1_1:+61571600 Msa0033780:intron
TGTTAAACTATGTATGATTG+GGG 0.548081 1_1:+61573621 Msa0033780:three_prime_UTR
CAGTAAAAGGGACAGACAAA+GGG 0.548513 1_1:-61572254 None:intergenic
GGAGTGTTATTGAGTTTGGT+GGG 0.550172 1_1:+61571694 Msa0033780:CDS
ACAGTAAAAGGGACAGACAA+AGG 0.562752 1_1:-61572255 None:intergenic
CTTGTTAGGATGAGTTGTTG+TGG 0.568257 1_1:+61572382 Msa0033780:intron
AAAGACTCTGGTCTCTCTGA+TGG 0.569077 1_1:+61571485 Msa0033780:CDS
GCGATGGAGTGGGAAGGCAT+GGG 0.569614 1_1:-61571348 None:intergenic
AAGACATTCTCTGGTTAGAA+GGG 0.573762 1_1:-61571457 None:intergenic
ATGTCTTGGAGAAAAGACTC+TGG 0.573843 1_1:+61571473 Msa0033780:CDS
ATCCACAAAGGATACACCAC+AGG 0.581594 1_1:+61573169 Msa0033780:CDS
TTGAAGATGTCATACATGGT+GGG 0.582564 1_1:+61573132 Msa0033780:CDS
TAAGCAAGTGTTCCCACAAG+TGG 0.582903 1_1:-61573387 None:intergenic
TGGGGTATATTGTGCAGAAG+AGG 0.588731 1_1:-61572733 None:intergenic
TCTGCAGCAACTTCAGAACC+AGG 0.590338 1_1:-61571998 None:intergenic
TCACATTCTGTTGTGCGTTG+TGG 0.597476 1_1:+61572941 Msa0033780:CDS
CATTCTGTTGTGCGTTGTGG+TGG 0.598006 1_1:+61572944 Msa0033780:CDS
CAGAACCTTAGCCAAGAAGC+AGG 0.599799 1_1:+61572991 Msa0033780:CDS
TGTGAGTGGCAAAGTGAGGG+TGG 0.602326 1_1:-61571373 None:intergenic
TGAAGATGTCATACATGGTG+GGG 0.604622 1_1:+61573133 Msa0033780:CDS
AACACTCCATGAAAGCATAG+TGG 0.607639 1_1:-61571679 None:intergenic
ATAACAAACATGTTGGAGCA+AGG 0.610200 1_1:+61572514 Msa0033780:CDS
CCTTCAATGGCTGTACACCC+AGG 0.614449 1_1:+61573204 Msa0033780:CDS
AGCTACCAGTAAGAAGCTAG+TGG 0.617412 1_1:-61572897 None:intergenic
TCTTCTGCACAATATACCCC+AGG 0.617991 1_1:+61572735 Msa0033780:CDS
GTGGTGGCGATGGAGTGGGA+AGG 0.619272 1_1:-61571354 None:intergenic
AAGTGGCACCTGCAAGACAG+AGG 0.620249 1_1:-61571202 None:intergenic
ATAGTGGTAGTAAAAGCCAT+AGG 0.628059 1_1:-61571663 None:intergenic
ATGGCCCTTGTAGTCATGGA+GGG 0.631433 1_1:-61572670 None:intergenic
AGTGGCACCTGCAAGACAGA+GGG 0.634799 1_1:-61571201 None:intergenic
TGTTAGGATGAGTTGTTGTG+GGG 0.636308 1_1:+61572384 Msa0033780:intron
ACAATGAGTAAGTTTCATTG+TGG 0.638295 1_1:+61573574 Msa0033780:three_prime_UTR
ATTGAAGATGTCATACATGG+TGG 0.647567 1_1:+61573131 Msa0033780:CDS
TAACCAACCAAAGAGCAAAG+TGG 0.652720 1_1:-61571219 None:intergenic
ACATGGTGGGGTATGGACCA+AGG 0.656858 1_1:+61573145 Msa0033780:CDS
TAGTTGTGAGTGGCAAAGTG+AGG 0.663280 1_1:-61571377 None:intergenic
AATGGCCCTTGTAGTCATGG+AGG 0.663344 1_1:-61572671 None:intergenic
GAAAGATCCAATGTTCAGCA+GGG 0.663959 1_1:+61573226 Msa0033780:CDS
TGCATCTCTGTAGTTGTGAG+TGG 0.664791 1_1:-61571387 None:intergenic
AGTTGTGAGTGGCAAAGTGA+GGG 0.678935 1_1:-61571376 None:intergenic
GAGTGGCAAAGTGAGGGTGG+TGG 0.679747 1_1:-61571370 None:intergenic
ATGGACCAAGGTATCCACAA+AGG 0.706125 1_1:+61573157 Msa0033780:CDS
TCCACAAAGGATACACCACA+GGG 0.706214 1_1:+61573170 Msa0033780:CDS
CAGTTTGCTGATCAACACAG+AGG 0.707543 1_1:+61572209 Msa0033780:CDS
AAATCCCTCCATGACTACAA+GGG 0.708720 1_1:+61572666 Msa0033780:CDS
AAGGAAGTGATGATCCCCTG+TGG 0.807933 1_1:-61573185 None:intergenic
CCACAAAGGATACACCACAG+GGG 0.846463 1_1:+61573171 Msa0033780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGATGAAAAAAAATTAAAAA+TGG + chr1_1:61572123-61572142 Msa0033780:intron 10.0%
!! TAAATTTCATTATTTCAATT+AGG - chr1_1:61573027-61573046 None:intergenic 10.0%
!!! TTTTTATATTTTCTCTAATT+TGG + chr1_1:61573493-61573512 Msa0033780:three_prime_UTR 10.0%
!!! TGATTTTGATTAATTTTTGT+TGG + chr1_1:61573069-61573088 Msa0033780:intron 15.0%
!!! ATATCTTTGTTGCTTATTTT+TGG + chr1_1:61571568-61571587 Msa0033780:intron 20.0%
!!! CATTAACTTGAATGTAATTT+AGG - chr1_1:61572449-61572468 None:intergenic 20.0%
!!! CTAAATTACATTCAAGTTAA+TGG + chr1_1:61572447-61572466 Msa0033780:CDS 20.0%
!!! TTAATTTGTTTGATACTATG+TGG - chr1_1:61572568-61572587 None:intergenic 20.0%
!!! CATTTTTTTTTGTTTGTTTG+TGG + chr1_1:61572608-61572627 Msa0033780:intron 20.0%
!!! TTTTGTTGGTATTTTTTGTT+AGG + chr1_1:61573083-61573102 Msa0033780:intron 20.0%
!!! TTAGTACTAGTACTTTTAAT+TGG + chr1_1:61573516-61573535 Msa0033780:three_prime_UTR 20.0%
!! AATGTTAAACTATGTATGAT+TGG + chr1_1:61573619-61573638 Msa0033780:three_prime_UTR 20.0%
!! ATGTTAAACTATGTATGATT+GGG + chr1_1:61573620-61573639 Msa0033780:three_prime_UTR 20.0%
! AAAACTAACCTGAACATAAA+TGG - chr1_1:61571805-61571824 None:intergenic 25.0%
!!! TGGTTTTTGAGATTTTGTTA+AGG + chr1_1:61571839-61571858 Msa0033780:intron 25.0%
!! ATTTTGTTAAGGAGAAAACA+TGG + chr1_1:61571850-61571869 Msa0033780:intron 25.0%
!!! TTTTTGGGTTTTTTGTTTGA+AGG + chr1_1:61571886-61571905 Msa0033780:intron 25.0%
!!! ACTAAAATTTTGGAGTATGT+TGG - chr1_1:61572073-61572092 None:intergenic 25.0%
!!! ATTATAGTACTTTTGACTGA+TGG + chr1_1:61572348-61572367 Msa0033780:intron 25.0%
!!! TTATAGTACTTTTGACTGAT+GGG + chr1_1:61572349-61572368 Msa0033780:intron 25.0%
! TGAATGTAATTTAGGTACAT+TGG - chr1_1:61572441-61572460 None:intergenic 25.0%
!!! TTTAGGAATTTCTAGTTCAA+AGG + chr1_1:61572640-61572659 Msa0033780:intron 25.0%
!!! TTAGGAATTTCTAGTTCAAA+GGG + chr1_1:61572641-61572660 Msa0033780:intron 25.0%
!!! TATCTCAGTTTTAACTCTAT+TGG + chr1_1:61572776-61572795 Msa0033780:intron 25.0%
! TGTTAAACTATGTATGATTG+GGG + chr1_1:61573621-61573640 Msa0033780:three_prime_UTR 25.0%
!! TCATTTTGAAGAGTGTGAAA+GGG - chr1_1:61571259-61571278 None:intergenic 30.0%
! TTCAAAGAAGAGAATGGATT+TGG - chr1_1:61571417-61571436 None:intergenic 30.0%
AAATCCATTCTCTTCTTTGA+AGG + chr1_1:61571416-61571435 Msa0033780:CDS 30.0%
TTGGCTTAAATGTACAATGT+AGG + chr1_1:61571587-61571606 Msa0033780:intron 30.0%
!! ATGTACAATGTAGGTTGATT+TGG + chr1_1:61571596-61571615 Msa0033780:intron 30.0%
! AGTTTTTCTTCTTCTGTTCA+TGG + chr1_1:61571819-61571838 Msa0033780:intron 30.0%
!! TGGTAAATGAGGTTGATTTT+TGG + chr1_1:61571870-61571889 Msa0033780:intron 30.0%
!! GGTAAATGAGGTTGATTTTT+GGG + chr1_1:61571871-61571890 Msa0033780:intron 30.0%
TCAATCTTGAAAACACTTCT+TGG - chr1_1:61571968-61571987 None:intergenic 30.0%
!! ACTCCAAAATTTTAGTGAGA+AGG + chr1_1:61572077-61572096 Msa0033780:CDS 30.0%
!! CTCCAAAATTTTAGTGAGAA+GGG + chr1_1:61572078-61572097 Msa0033780:CDS 30.0%
AGATTGTGTTTCTTTCTCTT+TGG + chr1_1:61572174-61572193 Msa0033780:intron 30.0%
GATTGTGTTTCTTTCTCTTT+GGG + chr1_1:61572175-61572194 Msa0033780:intron 30.0%
AGTATGACTCAAGTAAAAAC+TGG - chr1_1:61572324-61572343 None:intergenic 30.0%
GATACTATGTGGTGAAATTT+AGG - chr1_1:61572557-61572576 None:intergenic 30.0%
!!! GTTTGTGGTTTTGTGATTTT+AGG + chr1_1:61572623-61572642 Msa0033780:intron 30.0%
AAACTGAGATAGAAGAAAGA+GGG - chr1_1:61572767-61572786 None:intergenic 30.0%
AAAACTGAGATAGAAGAAAG+AGG - chr1_1:61572768-61572787 None:intergenic 30.0%
!! TTAACTCTATTGGTTTCATG+TGG + chr1_1:61572786-61572805 Msa0033780:intron 30.0%
!! ATGTGATTTGGTCAAGTATT+TGG - chr1_1:61572927-61572946 None:intergenic 30.0%
!!! TGTTGGTATTTTTTGTTAGG+TGG + chr1_1:61573086-61573105 Msa0033780:intron 30.0%
ATGATAGGTTTCCAGATAAA+CGG + chr1_1:61573322-61573341 Msa0033780:CDS 30.0%
ACAATGAGTAAGTTTCATTG+TGG + chr1_1:61573574-61573593 Msa0033780:three_prime_UTR 30.0%
!! GTCATTTTGAAGAGTGTGAA+AGG - chr1_1:61571260-61571279 None:intergenic 35.0%
AAGAAGAGAAGAGAGTAAGA+AGG - chr1_1:61571316-61571335 None:intergenic 35.0%
AAGACATTCTCTGGTTAGAA+GGG - chr1_1:61571460-61571479 None:intergenic 35.0%
!! ACAATGTAGGTTGATTTGGT+TGG + chr1_1:61571600-61571619 Msa0033780:intron 35.0%
!!! TGTCAAGTTTGGTTTTCCTA+TGG + chr1_1:61571647-61571666 Msa0033780:CDS 35.0%
ATAGTGGTAGTAAAAGCCAT+AGG - chr1_1:61571666-61571685 None:intergenic 35.0%
TTACTACCACTATGCTTTCA+TGG + chr1_1:61571673-61571692 Msa0033780:CDS 35.0%
! TCATGGAGTGTTATTGAGTT+TGG + chr1_1:61571690-61571709 Msa0033780:CDS 35.0%
TCCAAACACCATTTATGTTC+AGG + chr1_1:61571794-61571813 Msa0033780:CDS 35.0%
ACCTGAACATAAATGGTGTT+TGG - chr1_1:61571798-61571817 None:intergenic 35.0%
AGGAGAAAACATGGTAAATG+AGG + chr1_1:61571859-61571878 Msa0033780:intron 35.0%
!!! TTGGGTTTTTTGTTTGAAGG+TGG + chr1_1:61571889-61571908 Msa0033780:intron 35.0%
!!! TGGGTTTTTTGTTTGAAGGT+GGG + chr1_1:61571890-61571909 Msa0033780:intron 35.0%
TAAAAAGGACCATGCTTGTT+GGG + chr1_1:61571919-61571938 Msa0033780:CDS 35.0%
! AGCCCTTCTCACTAAAATTT+TGG - chr1_1:61572083-61572102 None:intergenic 35.0%
! GTTTCTTTCTCTTTGGGTTT+AGG + chr1_1:61572181-61572200 Msa0033780:intron 35.0%
CCAGAGTAATCACAGTAAAA+GGG - chr1_1:61572269-61572288 None:intergenic 35.0%
ACCAGAGTAATCACAGTAAA+AGG - chr1_1:61572270-61572289 None:intergenic 35.0%
TCAAGTAAAAACTGGCACAA+TGG - chr1_1:61572316-61572335 None:intergenic 35.0%
!! TGGGTTTGTAATGACTTGTT+AGG + chr1_1:61572368-61572387 Msa0033780:intron 35.0%
TTGTTAGGATGAGTTGTTGT+GGG + chr1_1:61572383-61572402 Msa0033780:intron 35.0%
CAAGTTAATGGTCAAATCCT+AGG + chr1_1:61572459-61572478 Msa0033780:CDS 35.0%
AGTTTGACAACACATTTGGT+TGG + chr1_1:61572490-61572509 Msa0033780:CDS 35.0%
GTTTGACAACACATTTGGTT+GGG + chr1_1:61572491-61572510 Msa0033780:CDS 35.0%
ATAACAAACATGTTGGAGCA+AGG + chr1_1:61572514-61572533 Msa0033780:CDS 35.0%
AGCAAGGATACTTCTTTCAA+AGG + chr1_1:61572530-61572549 Msa0033780:CDS 35.0%
GCTCAAAAACTGTTACAACT+TGG - chr1_1:61572813-61572832 None:intergenic 35.0%
TTGAGCTTGTGAAACTTTAC+AGG + chr1_1:61572827-61572846 Msa0033780:intron 35.0%
!! GTATTTTTGTACCTGCTTCT+TGG - chr1_1:61573005-61573024 None:intergenic 35.0%
CCATGTATGACATCTTCAAT+GGG - chr1_1:61573131-61573150 None:intergenic 35.0%
ACCATGTATGACATCTTCAA+TGG - chr1_1:61573132-61573151 None:intergenic 35.0%
ATTGAAGATGTCATACATGG+TGG + chr1_1:61573131-61573150 Msa0033780:CDS 35.0%
TTGAAGATGTCATACATGGT+GGG + chr1_1:61573132-61573151 Msa0033780:CDS 35.0%
TACTAGAATGTTGGGATTAG+GGG - chr1_1:61573274-61573293 None:intergenic 35.0%
CTACTAGAATGTTGGGATTA+GGG - chr1_1:61573275-61573294 None:intergenic 35.0%
TTATGTTAATGCACCACTTG+TGG + chr1_1:61573374-61573393 Msa0033780:CDS 35.0%
TATGTTAATGCACCACTTGT+GGG + chr1_1:61573375-61573394 Msa0033780:CDS 35.0%
TCAGATTCATCCAAACAAGT+TGG - chr1_1:61573453-61573472 None:intergenic 35.0%
AGTGTGCTCTGTTTAATGCT+TGG - chr1_1:61571181-61571200 None:intergenic 40.0%
TAACCAACCAAAGAGCAAAG+TGG - chr1_1:61571222-61571241 None:intergenic 40.0%
AGAAGAGAGTAAGAAGGAGA+AGG - chr1_1:61571310-61571329 None:intergenic 40.0%
! TTGGCCTTCAAAGAAGAGAA+TGG - chr1_1:61571423-61571442 None:intergenic 40.0%
! TTCTTTGAAGGCCAAAGATC+AGG + chr1_1:61571428-61571447 Msa0033780:CDS 40.0%
! TCTTTGAAGGCCAAAGATCA+GGG + chr1_1:61571429-61571448 Msa0033780:CDS 40.0%
CAAGACATTCTCTGGTTAGA+AGG - chr1_1:61571461-61571480 None:intergenic 40.0%
CTTCTAACCAGAGAATGTCT+TGG + chr1_1:61571459-61571478 Msa0033780:CDS 40.0%
! CTTTTCTCCAAGACATTCTC+TGG - chr1_1:61571469-61571488 None:intergenic 40.0%
ATGTCTTGGAGAAAAGACTC+TGG + chr1_1:61571473-61571492 Msa0033780:CDS 40.0%
!! ATGTAGGTTGATTTGGTTGG+AGG + chr1_1:61571603-61571622 Msa0033780:intron 40.0%
!! TGTAGGTTGATTTGGTTGGA+GGG + chr1_1:61571604-61571623 Msa0033780:intron 40.0%
! AACACTCCATGAAAGCATAG+TGG - chr1_1:61571682-61571701 None:intergenic 40.0%
! TGGAGTGTTATTGAGTTTGG+TGG + chr1_1:61571693-61571712 Msa0033780:CDS 40.0%
! GGAGTGTTATTGAGTTTGGT+GGG + chr1_1:61571694-61571713 Msa0033780:CDS 40.0%
CGAATAGCTTCTCTAGCATT+AGG - chr1_1:61571738-61571757 None:intergenic 40.0%
ATGCTAGAGAAGCTATTCGT+TGG + chr1_1:61571739-61571758 Msa0033780:CDS 40.0%
TGCTAGAGAAGCTATTCGTT+GGG + chr1_1:61571740-61571759 Msa0033780:CDS 40.0%
CTAAAAAGGACCATGCTTGT+TGG + chr1_1:61571918-61571937 Msa0033780:CDS 40.0%
AAGATTGATGCAAATGCACC+TGG + chr1_1:61571980-61571999 Msa0033780:CDS 40.0%
! TTTTAGTGAGAAGGGCTATC+AGG + chr1_1:61572086-61572105 Msa0033780:CDS 40.0%
TTTAGTGAGAAGGGCTATCA+GGG + chr1_1:61572087-61572106 Msa0033780:CDS 40.0%
GGTTTCAAGACATTGCTGTA+AGG - chr1_1:61572236-61572255 None:intergenic 40.0%
CAGTAAAAGGGACAGACAAA+GGG - chr1_1:61572257-61572276 None:intergenic 40.0%
ACAGTAAAAGGGACAGACAA+AGG - chr1_1:61572258-61572277 None:intergenic 40.0%
! CCCTTTTACTGTGATTACTC+TGG + chr1_1:61572266-61572285 Msa0033780:CDS 40.0%
CTGTGATTACTCTGGTTATC+AGG + chr1_1:61572274-61572293 Msa0033780:CDS 40.0%
CTTGTTAGGATGAGTTGTTG+TGG + chr1_1:61572382-61572401 Msa0033780:intron 40.0%
TGTTAGGATGAGTTGTTGTG+GGG + chr1_1:61572384-61572403 Msa0033780:intron 40.0%
GCAGAGTTTGACAACACATT+TGG + chr1_1:61572486-61572505 Msa0033780:CDS 40.0%
GGTTGGGATAACAAACATGT+TGG + chr1_1:61572507-61572526 Msa0033780:CDS 40.0%
AAAATCCCTCCATGACTACA+AGG + chr1_1:61572665-61572684 Msa0033780:CDS 40.0%
AAATCCCTCCATGACTACAA+GGG + chr1_1:61572666-61572685 Msa0033780:CDS 40.0%
AGCAAGCGAAATTGTCTGAA+TGG - chr1_1:61572692-61572711 None:intergenic 40.0%
TTCGCTTGCTCTTTAATTCC+TGG + chr1_1:61572702-61572721 Msa0033780:CDS 40.0%
AGCTTGTGAAACTTTACAGG+TGG + chr1_1:61572830-61572849 Msa0033780:intron 40.0%
GCTTGTGAAACTTTACAGGT+GGG + chr1_1:61572831-61572850 Msa0033780:intron 40.0%
ACGCACAACAGAATGTGATT+TGG - chr1_1:61572939-61572958 None:intergenic 40.0%
!! GAGTCTCTTTGGTGTTACTA+TGG - chr1_1:61572972-61572991 None:intergenic 40.0%
!! TGTTAGGTGGATTACTTGCT+AGG + chr1_1:61573099-61573118 Msa0033780:intron 40.0%
CCCATTGAAGATGTCATACA+TGG + chr1_1:61573128-61573147 Msa0033780:CDS 40.0%
TGAAGATGTCATACATGGTG+GGG + chr1_1:61573133-61573152 Msa0033780:CDS 40.0%
TGTATCCTTTGTGGATACCT+TGG - chr1_1:61573165-61573184 None:intergenic 40.0%
CTGAACATTGGATCTTTCCT+GGG - chr1_1:61573224-61573243 None:intergenic 40.0%
GAAAGATCCAATGTTCAGCA+GGG + chr1_1:61573226-61573245 Msa0033780:CDS 40.0%
CCTACTAGAATGTTGGGATT+AGG - chr1_1:61573276-61573295 None:intergenic 40.0%
CCTAATCCCAACATTCTAGT+AGG + chr1_1:61573273-61573292 Msa0033780:CDS 40.0%
ACAGCACCTACTAGAATGTT+GGG - chr1_1:61573282-61573301 None:intergenic 40.0%
AACAGCACCTACTAGAATGT+TGG - chr1_1:61573283-61573302 None:intergenic 40.0%
!! ATTCTAGTAGGTGCTGTTGT+TGG + chr1_1:61573285-61573304 Msa0033780:CDS 40.0%
TCGTAATCTGACCGTTTATC+TGG - chr1_1:61573336-61573355 None:intergenic 40.0%
GGTGCATTAACATAAGTTGC+TGG - chr1_1:61573369-61573388 None:intergenic 40.0%
GCTTATCTTGCACACTCATT+CGG + chr1_1:61573405-61573424 Msa0033780:CDS 40.0%
GAAGGATAGGGAAAGGGAAA+GGG - chr1_1:61571282-61571301 None:intergenic 45.0%
GAAGAGGAAGGATAGGGAAA+GGG - chr1_1:61571288-61571307 None:intergenic 45.0%
GAGAAGGAAGAGGAAGGATA+GGG - chr1_1:61571294-61571313 None:intergenic 45.0%
AAGAAGGAGAAGGAAGAGGA+AGG - chr1_1:61571300-61571319 None:intergenic 45.0%
GAGTAAGAAGGAGAAGGAAG+AGG - chr1_1:61571304-61571323 None:intergenic 45.0%
AGTTGTGAGTGGCAAAGTGA+GGG - chr1_1:61571379-61571398 None:intergenic 45.0%
TAGTTGTGAGTGGCAAAGTG+AGG - chr1_1:61571380-61571399 None:intergenic 45.0%
TGCATCTCTGTAGTTGTGAG+TGG - chr1_1:61571390-61571409 None:intergenic 45.0%
AAAGACTCTGGTCTCTCTGA+TGG + chr1_1:61571485-61571504 Msa0033780:CDS 45.0%
!! GTTGGAGGGTATTATGATGC+TGG + chr1_1:61571618-61571637 Msa0033780:CDS 45.0%
GCTGGTGACAATGTCAAGTT+TGG + chr1_1:61571636-61571655 Msa0033780:CDS 45.0%
!! TGAGTTTGGTGGGTTGATGA+AGG + chr1_1:61571704-61571723 Msa0033780:CDS 45.0%
!! GAGTTTGGTGGGTTGATGAA+GGG + chr1_1:61571705-61571724 Msa0033780:CDS 45.0%
GAAGGTGGGAGATGCTAAAA+AGG + chr1_1:61571904-61571923 Msa0033780:intron 45.0%
TTGGGAGAGACCAGAAGATA+TGG + chr1_1:61571937-61571956 Msa0033780:CDS 45.0%
! CTTGGTGTGTCCATATCTTC+TGG - chr1_1:61571950-61571969 None:intergenic 45.0%
!! CAGTTTGCTGATCAACACAG+AGG + chr1_1:61572209-61572228 Msa0033780:CDS 45.0%
TGCTCTTTAATTCCTGGAGC+TGG + chr1_1:61572708-61572727 Msa0033780:CDS 45.0%
TGGGGTATATTGTGCAGAAG+AGG - chr1_1:61572736-61572755 None:intergenic 45.0%
TCTTCTGCACAATATACCCC+AGG + chr1_1:61572735-61572754 Msa0033780:CDS 45.0%
TGCACAATATACCCCAGGTA+AGG + chr1_1:61572740-61572759 Msa0033780:intron 45.0%
AAGAAAGAGGGACCTTACCT+GGG - chr1_1:61572755-61572774 None:intergenic 45.0%
! CACATCCACTAGCTTCTTAC+TGG + chr1_1:61572892-61572911 Msa0033780:CDS 45.0%
AGCTACCAGTAAGAAGCTAG+TGG - chr1_1:61572900-61572919 None:intergenic 45.0%
TCACATTCTGTTGTGCGTTG+TGG + chr1_1:61572941-61572960 Msa0033780:CDS 45.0%
!! GCTAAGGTTCTGAGTCTCTT+TGG - chr1_1:61572983-61573002 None:intergenic 45.0%
TTGTACCTGCTTCTTGGCTA+AGG - chr1_1:61572999-61573018 None:intergenic 45.0%
! ATGTCATACATGGTGGGGTA+TGG + chr1_1:61573138-61573157 Msa0033780:CDS 45.0%
! ATGGACCAAGGTATCCACAA+AGG + chr1_1:61573157-61573176 Msa0033780:CDS 45.0%
ATCCACAAAGGATACACCAC+AGG + chr1_1:61573169-61573188 Msa0033780:CDS 45.0%
TCCACAAAGGATACACCACA+GGG + chr1_1:61573170-61573189 Msa0033780:CDS 45.0%
GGGATCATCACTTCCTTCAA+TGG + chr1_1:61573191-61573210 Msa0033780:CDS 45.0%
GCTGAACATTGGATCTTTCC+TGG - chr1_1:61573225-61573244 None:intergenic 45.0%
GGAAAGATCCAATGTTCAGC+AGG + chr1_1:61573225-61573244 Msa0033780:CDS 45.0%
GGAAACCTATCATGCTGATC+TGG - chr1_1:61573315-61573334 None:intergenic 45.0%
TAAGCAAGTGTTCCCACAAG+TGG - chr1_1:61573390-61573409 None:intergenic 45.0%
! ACCAGCATCTCCAACTTGTT+TGG + chr1_1:61573440-61573459 Msa0033780:three_prime_UTR 45.0%
! TCCAAACAAGTTGGAGATGC+TGG - chr1_1:61573444-61573463 None:intergenic 45.0%
!! GTGCCACTTTGCTCTTTGGT+TGG + chr1_1:61571216-61571235 Msa0033780:five_prime_UTR 50.0%
GGAAGGATAGGGAAAGGGAA+AGG - chr1_1:61571283-61571302 None:intergenic 50.0%
GGAAGAGGAAGGATAGGGAA+AGG - chr1_1:61571289-61571308 None:intergenic 50.0%
GGAGAAGGAAGAGGAAGGAT+AGG - chr1_1:61571295-61571314 None:intergenic 50.0%
AAGGGAGCTTCCCTGATCTT+TGG - chr1_1:61571442-61571461 None:intergenic 50.0%
TCTGCAGCAACTTCAGAACC+AGG - chr1_1:61572001-61572020 None:intergenic 50.0%
TGTCAAACTCTGCAGCTCCT+AGG - chr1_1:61572479-61572498 None:intergenic 50.0%
ATGGCCCTTGTAGTCATGGA+GGG - chr1_1:61572673-61572692 None:intergenic 50.0%
AATGGCCCTTGTAGTCATGG+AGG - chr1_1:61572674-61572693 None:intergenic 50.0%
CTGAATGGCCCTTGTAGTCA+TGG - chr1_1:61572677-61572696 None:intergenic 50.0%
AGAAAGAGGGACCTTACCTG+GGG - chr1_1:61572754-61572773 None:intergenic 50.0%
GAAGAAAGAGGGACCTTACC+TGG - chr1_1:61572756-61572775 None:intergenic 50.0%
CATTCTGTTGTGCGTTGTGG+TGG + chr1_1:61572944-61572963 Msa0033780:CDS 50.0%
CAGAACCTTAGCCAAGAAGC+AGG + chr1_1:61572991-61573010 Msa0033780:CDS 50.0%
CCACAAAGGATACACCACAG+GGG + chr1_1:61573171-61573190 Msa0033780:CDS 50.0%
AAGGAAGTGATGATCCCCTG+TGG - chr1_1:61573188-61573207 None:intergenic 50.0%
CACTGAACCCTGCTGAACAT+TGG - chr1_1:61573236-61573255 None:intergenic 50.0%
!! CTAGTAGGTGCTGTTGTTGG+AGG + chr1_1:61573288-61573307 Msa0033780:CDS 50.0%
GAGGACCAGATCAGCATGAT+AGG + chr1_1:61573307-61573326 Msa0033780:CDS 50.0%
AGTGGCACCTGCAAGACAGA+GGG - chr1_1:61571204-61571223 None:intergenic 55.0%
AAGTGGCACCTGCAAGACAG+AGG - chr1_1:61571205-61571224 None:intergenic 55.0%
!! GCAGGTGCCACTTTGCTCTT+TGG + chr1_1:61571212-61571231 Msa0033780:five_prime_UTR 55.0%
TGTGAGTGGCAAAGTGAGGG+TGG - chr1_1:61571376-61571395 None:intergenic 55.0%
CTGGTCTCTCCCAACAAGCA+TGG - chr1_1:61571931-61571950 None:intergenic 55.0%
!! AGTTGTTGTGGGGTGCTGCT+TGG + chr1_1:61572394-61572413 Msa0033780:CDS 55.0%
! ACATGGTGGGGTATGGACCA+AGG + chr1_1:61573145-61573164 Msa0033780:CDS 55.0%
CCCCTGTGGTGTATCCTTTG+TGG - chr1_1:61573174-61573193 None:intergenic 55.0%
CCTGGGTGTACAGCCATTGA+AGG - chr1_1:61573207-61573226 None:intergenic 55.0%
CCTTCAATGGCTGTACACCC+AGG + chr1_1:61573204-61573223 Msa0033780:CDS 55.0%
GCACACTCCCTCTGTCTTGC+AGG + chr1_1:61571194-61571213 Msa0033780:five_prime_UTR 60.0%
! GGAGTGGGAAGGCATGGGTA+TGG - chr1_1:61571346-61571365 None:intergenic 60.0%
! GCGATGGAGTGGGAAGGCAT+GGG - chr1_1:61571351-61571370 None:intergenic 60.0%
! CAAAGTGAGGGTGGTGGCGA+TGG - chr1_1:61571367-61571386 None:intergenic 60.0%
GAGTGGCAAAGTGAGGGTGG+TGG - chr1_1:61571373-61571392 None:intergenic 60.0%
GCAGAAGAGGATCCAGCTCC+AGG - chr1_1:61572723-61572742 None:intergenic 60.0%
GGCGATGGAGTGGGAAGGCA+TGG - chr1_1:61571352-61571371 None:intergenic 65.0%
! GTGGTGGCGATGGAGTGGGA+AGG - chr1_1:61571357-61571376 None:intergenic 65.0%
! GAGGGTGGTGGCGATGGAGT+GGG - chr1_1:61571361-61571380 None:intergenic 65.0%
! TGAGGGTGGTGGCGATGGAG+TGG - chr1_1:61571362-61571381 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 61571171 61573715 61571171 ID=Msa0033780;Name=Msa0033780
chr1_1 mRNA 61571171 61573715 61571171 ID=Msa0033780-mRNA-1;Parent=Msa0033780;Name=Msa0033780-mRNA-1;_AED=0.10;_eAED=0.10;_QI=104|1|1|1|1|1|8|278|505
chr1_1 exon 61571171 61571520 61571171 ID=Msa0033780-mRNA-1:exon:19291;Parent=Msa0033780-mRNA-1
chr1_1 exon 61571609 61571815 61571609 ID=Msa0033780-mRNA-1:exon:19292;Parent=Msa0033780-mRNA-1
chr1_1 exon 61571908 61572108 61571908 ID=Msa0033780-mRNA-1:exon:19293;Parent=Msa0033780-mRNA-1
chr1_1 exon 61572203 61572295 61572203 ID=Msa0033780-mRNA-1:exon:19294;Parent=Msa0033780-mRNA-1
chr1_1 exon 61572390 61572551 61572390 ID=Msa0033780-mRNA-1:exon:19295;Parent=Msa0033780-mRNA-1
chr1_1 exon 61572645 61572756 61572645 ID=Msa0033780-mRNA-1:exon:19296;Parent=Msa0033780-mRNA-1
chr1_1 exon 61572849 61573012 61572849 ID=Msa0033780-mRNA-1:exon:19297;Parent=Msa0033780-mRNA-1
chr1_1 exon 61573105 61573715 61573105 ID=Msa0033780-mRNA-1:exon:19298;Parent=Msa0033780-mRNA-1
chr1_1 five_prime_UTR 61571171 61571274 61571171 ID=Msa0033780-mRNA-1:five_prime_utr;Parent=Msa0033780-mRNA-1
chr1_1 CDS 61571275 61571520 61571275 ID=Msa0033780-mRNA-1:cds;Parent=Msa0033780-mRNA-1
chr1_1 CDS 61571609 61571815 61571609 ID=Msa0033780-mRNA-1:cds;Parent=Msa0033780-mRNA-1
chr1_1 CDS 61571908 61572108 61571908 ID=Msa0033780-mRNA-1:cds;Parent=Msa0033780-mRNA-1
chr1_1 CDS 61572203 61572295 61572203 ID=Msa0033780-mRNA-1:cds;Parent=Msa0033780-mRNA-1
chr1_1 CDS 61572390 61572551 61572390 ID=Msa0033780-mRNA-1:cds;Parent=Msa0033780-mRNA-1
chr1_1 CDS 61572645 61572756 61572645 ID=Msa0033780-mRNA-1:cds;Parent=Msa0033780-mRNA-1
chr1_1 CDS 61572849 61573012 61572849 ID=Msa0033780-mRNA-1:cds;Parent=Msa0033780-mRNA-1
chr1_1 CDS 61573105 61573437 61573105 ID=Msa0033780-mRNA-1:cds;Parent=Msa0033780-mRNA-1
chr1_1 three_prime_UTR 61573438 61573715 61573438 ID=Msa0033780-mRNA-1:three_prime_utr;Parent=Msa0033780-mRNA-1
Gene Sequence

>Msa0033780

ATGACCCTTTCCCTTTCCCTATCCTTCCTCTTCCTTCTCCTTCTTACTCTCTTCTCTTCTTTCATTCTCCATACCCATGCCTTCCCACTCCATCGCCACCACCCTCACTTTGCCACTCACAACTACAGAGATGCACTCACCAAATCCATTCTCTTCTTTGAAGGCCAAAGATCAGGGAAGCTCCCTTCTAACCAGAGAATGTCTTGGAGAAAAGACTCTGGTCTCTCTGATGGCTCAGCAATGCATGTTGATTTGGTTGGAGGGTATTATGATGCTGGTGACAATGTCAAGTTTGGTTTTCCTATGGCTTTTACTACCACTATGCTTTCATGGAGTGTTATTGAGTTTGGTGGGTTGATGAAGGGTGAGTTGCCTAATGCTAGAGAAGCTATTCGTTGGGCTACTGATTATCTTCTAAAAGCTACTGCACATCCAAACACCATTTATGTTCAGGTGGGAGATGCTAAAAAGGACCATGCTTGTTGGGAGAGACCAGAAGATATGGACACACCAAGAAGTGTTTTCAAGATTGATGCAAATGCACCTGGTTCTGAAGTTGCTGCAGAAACTGCTGCAGCATTAGCAGCTGCTTCTCTTGTTTTCAGAAGAACTGATCCAACATACTCCAAAATTTTAGTGAGAAGGGCTATCAGGGTTTTTCAGTTTGCTGATCAACACAGAGGACCTTACAGCAATGTCTTGAAACCCTTTGTCTGTCCCTTTTACTGTGATTACTCTGGTTATCAGGATGAGTTGTTGTGGGGTGCTGCTTGGTTACACAAAGCTACAAAGAATCCAATGTACCTAAATTACATTCAAGTTAATGGTCAAATCCTAGGAGCTGCAGAGTTTGACAACACATTTGGTTGGGATAACAAACATGTTGGAGCAAGGATACTTCTTTCAAAGGAATTTCTAGTTCAAAGGGTAAAATCCCTCCATGACTACAAGGGCCATTCAGACAATTTCGCTTGCTCTTTAATTCCTGGAGCTGGATCCTCTTCTGCACAATATACCCCAGGTGGGCTTTTGTTCAAGATGAGTGATAGTAACATGCAGTATGTCACATCCACTAGCTTCTTACTGGTAGCTTATGCCAAATACTTGACCAAATCACATTCTGTTGTGCGTTGTGGTGGTACCATAGTAACACCAAAGAGACTCAGAACCTTAGCCAAGAAGCAGGTGGATTACTTGCTAGGAGATAACCCATTGAAGATGTCATACATGGTGGGGTATGGACCAAGGTATCCACAAAGGATACACCACAGGGGATCATCACTTCCTTCAATGGCTGTACACCCAGGAAAGATCCAATGTTCAGCAGGGTTCAGTGTGATGAGTTCACAATCCCCTAATCCCAACATTCTAGTAGGTGCTGTTGTTGGAGGACCAGATCAGCATGATAGGTTTCCAGATAAACGGTCAGATTACGAGCAATCAGAGCCAGCAACTTATGTTAATGCACCACTTGTGGGAACACTTGCTTATCTTGCACACTCATTCGGTCAACTTTAG
Protein sequence

>Msa0033780

MTLSLSLSFLFLLLLTLFSSFILHTHAFPLHRHHPHFATHNYRDALTKSILFFEGQRSGKLPSNQRMSWRKDSGLSDGSAMHVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGLMKGELPNAREAIRWATDYLLKATAHPNTIYVQVGDAKKDHACWERPEDMDTPRSVFKIDANAPGSEVAAETAAALAAASLVFRRTDPTYSKILVRRAIRVFQFADQHRGPYSNVLKPFVCPFYCDYSGYQDELLWGAAWLHKATKNPMYLNYIQVNGQILGAAEFDNTFGWDNKHVGARILLSKEFLVQRVKSLHDYKGHSDNFACSLIPGAGSSSAQYTPGGLLFKMSDSNMQYVTSTSFLLVAYAKYLTKSHSVVRCGGTIVTPKRLRTLAKKQVDYLLGDNPLKMSYMVGYGPRYPQRIHHRGSSLPSMAVHPGKIQCSAGFSVMSSQSPNPNILVGAVVGGPDQHDRFPDKRSDYEQSEPATYVNAPLVGTLAYLAHSFGQL*