Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349550 | XP_013466887.2 | 97.902 | 429 | 9 | 0 | 10 | 438 | 1 | 429 | 0.0 | 856 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349550 | sp|O04496|AED3_ARATH | 51.799 | 417 | 185 | 8 | 35 | 437 | 34 | 448 | 5.08e-140 | 411 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349550 | A0A396JQ13 | 97.902 | 429 | 9 | 0 | 10 | 438 | 1 | 429 | 0.0 | 856 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027800 | Msa0349550 | 0.834832 | 2.386070e-56 | -8.615850e-47 |
| Msa0031120 | Msa0349550 | 0.806165 | 9.390466e-50 | -8.615850e-47 |
| Msa0032980 | Msa0349550 | 0.838956 | 2.112501e-57 | -8.615850e-47 |
| Msa0044780 | Msa0349550 | -0.811331 | 7.386243e-51 | -8.615850e-47 |
| Msa0058130 | Msa0349550 | 0.813933 | 1.991723e-51 | -8.615850e-47 |
| Msa0062340 | Msa0349550 | 0.801741 | 7.805217e-49 | -8.615850e-47 |
| Msa0063190 | Msa0349550 | 0.814517 | 1.480206e-51 | -8.615850e-47 |
| Msa0078130 | Msa0349550 | 0.815702 | 8.074477e-52 | -8.615850e-47 |
| Msa0078500 | Msa0349550 | 0.821571 | 3.761526e-53 | -8.615850e-47 |
| Msa0080370 | Msa0349550 | 0.802181 | 6.337411e-49 | -8.615850e-47 |
| Msa0091350 | Msa0349550 | 0.849283 | 3.570642e-60 | -8.615850e-47 |
| Msa0106630 | Msa0349550 | 0.804133 | 2.500338e-49 | -8.615850e-47 |
| Msa0108630 | Msa0349550 | 0.814976 | 1.170934e-51 | -8.615850e-47 |
| Msa0123320 | Msa0349550 | 0.802202 | 6.275291e-49 | -8.615850e-47 |
| Msa0125590 | Msa0349550 | 0.814328 | 1.629062e-51 | -8.615850e-47 |
| Msa0126130 | Msa0349550 | 0.801250 | 9.836544e-49 | -8.615850e-47 |
| Msa0126210 | Msa0349550 | 0.828442 | 8.968566e-55 | -8.615850e-47 |
| Msa0127340 | Msa0349550 | 0.835295 | 1.823936e-56 | -8.615850e-47 |
| Msa0128570 | Msa0349550 | 0.811659 | 6.267628e-51 | -8.615850e-47 |
| Msa0165830 | Msa0349550 | 0.818206 | 2.211811e-52 | -8.615850e-47 |
| Msa0168050 | Msa0349550 | 0.805159 | 1.527331e-49 | -8.615850e-47 |
| Msa0170070 | Msa0349550 | 0.804481 | 2.116123e-49 | -8.615850e-47 |
| Msa0173250 | Msa0349550 | 0.812522 | 4.063474e-51 | -8.615850e-47 |
| Msa0186180 | Msa0349550 | 0.814125 | 1.806230e-51 | -8.615850e-47 |
| Msa0186360 | Msa0349550 | 0.808073 | 3.705247e-50 | -8.615850e-47 |
| Msa0186560 | Msa0349550 | 0.818968 | 1.485761e-52 | -8.615850e-47 |
| Msa0187040 | Msa0349550 | 0.803392 | 3.562531e-49 | -8.615850e-47 |
| Msa0241040 | Msa0349550 | 0.827350 | 1.642447e-54 | -8.615850e-47 |
| Msa0278840 | Msa0349550 | 0.806510 | 7.944595e-50 | -8.615850e-47 |
| Msa0341680 | Msa0349550 | 0.810221 | 1.283695e-50 | -8.615850e-47 |
| Msa0349550 | Msa0354840 | 0.813275 | 2.778876e-51 | -8.615850e-47 |
| Msa0349550 | Msa0373170 | 0.806251 | 9.008449e-50 | -8.615850e-47 |
| Msa0349550 | Msa0385730 | 0.822133 | 2.787869e-53 | -8.615850e-47 |
| Msa0349550 | Msa0396000 | 0.841594 | 4.322748e-58 | -8.615850e-47 |
| Msa0349550 | Msa0401060 | 0.812213 | 4.747460e-51 | -8.615850e-47 |
| Msa0349550 | Msa0413170 | 0.809186 | 2.142836e-50 | -8.615850e-47 |
| Msa0349550 | Msa0421750 | 0.819328 | 1.230337e-52 | -8.615850e-47 |
| Msa0349550 | Msa0433630 | 0.812717 | 3.684282e-51 | -8.615850e-47 |
| Msa0349550 | Msa0437480 | 0.800053 | 1.726388e-48 | -8.615850e-47 |
| Msa0349550 | Msa0440350 | 0.810970 | 8.843633e-51 | -8.615850e-47 |
| Msa0349550 | Msa0443570 | 0.954635 | 1.895419e-112 | -8.615850e-47 |
| Msa0349550 | Msa0447870 | 0.808397 | 3.160460e-50 | -8.615850e-47 |
| Msa0349550 | Msa0462780 | 0.804496 | 2.101169e-49 | -8.615850e-47 |
| Msa0349550 | Msa0466520 | 0.835504 | 1.615057e-56 | -8.615850e-47 |
| Msa0349550 | Msa0467690 | 0.807629 | 4.605050e-50 | -8.615850e-47 |
| Msa0349550 | Msa0477480 | 0.807007 | 6.235752e-50 | -8.615850e-47 |
| Msa0349550 | Msa0480730 | 0.803254 | 3.805164e-49 | -8.615850e-47 |
| Msa0349550 | Msa0495300 | 0.828330 | 9.545700e-55 | -8.615850e-47 |
| Msa0349550 | Msa0514020 | 0.826583 | 2.505017e-54 | -8.615850e-47 |
| Msa0349550 | Msa0521530 | 0.806868 | 6.672663e-50 | -8.615850e-47 |
| Msa0349550 | Msa0524320 | 0.862531 | 4.743460e-64 | -8.615850e-47 |
| Msa0349550 | Msa0524430 | 0.862311 | 5.544499e-64 | -8.615850e-47 |
| Msa0349550 | Msa0527850 | 0.817840 | 2.675829e-52 | -8.615850e-47 |
| Msa0349550 | Msa0553750 | 0.865993 | 3.945002e-65 | -8.615850e-47 |
| Msa0349550 | Msa0554300 | 0.804304 | 2.303191e-49 | -8.615850e-47 |
| Msa0349550 | Msa0560570 | 0.829625 | 4.635389e-55 | -8.615850e-47 |
| Msa0349550 | Msa0561560 | 0.810643 | 1.040771e-50 | -8.615850e-47 |
| Msa0349550 | Msa0572830 | 0.828550 | 8.446043e-55 | -8.615850e-47 |
| Msa0349550 | Msa0582460 | 0.806124 | 9.578989e-50 | -8.615850e-47 |
| Msa0349550 | Msa0586200 | 0.804953 | 1.686827e-49 | -8.615850e-47 |
| Msa0349550 | Msa0607800 | 0.843621 | 1.251625e-58 | -8.615850e-47 |
| Msa0349550 | Msa0614550 | 0.830765 | 2.442860e-55 | -8.615850e-47 |
| Msa0349550 | Msa0620500 | 0.817838 | 2.679336e-52 | -8.615850e-47 |
| Msa0349550 | Msa0639190 | 0.829086 | 6.265927e-55 | -8.615850e-47 |
| Msa0349550 | Msa0647440 | 0.837578 | 4.784314e-57 | -8.615850e-47 |
| Msa0349550 | Msa0648040 | 0.853250 | 2.704960e-61 | -8.615850e-47 |
| Msa0349550 | Msa0648760 | 0.807008 | 6.232926e-50 | -8.615850e-47 |
| Msa0349550 | Msa0663290 | 0.800934 | 1.141641e-48 | -8.615850e-47 |
| Msa0349550 | Msa0664070 | 0.804795 | 1.820052e-49 | -8.615850e-47 |
| Msa0349550 | Msa0687090 | 0.837111 | 6.303384e-57 | -8.615850e-47 |
| Msa0349550 | Msa0688380 | 0.856656 | 2.775457e-62 | -8.615850e-47 |
| Msa0349550 | Msa0689830 | 0.830638 | 2.623405e-55 | -8.615850e-47 |
| Msa0349550 | Msa0690320 | 0.811806 | 5.824315e-51 | -8.615850e-47 |
| Msa0349550 | Msa0690740 | 0.855660 | 5.436234e-62 | -8.615850e-47 |
| Msa0349550 | Msa0697830 | 0.808910 | 2.455083e-50 | -8.615850e-47 |
| Msa0349550 | Msa0707260 | 0.815515 | 8.887130e-52 | -8.615850e-47 |
| Msa0349550 | Msa0714520 | 0.812499 | 4.110514e-51 | -8.615850e-47 |
| Msa0349550 | Msa0717900 | 0.814319 | 1.636618e-51 | -8.615850e-47 |
| Msa0349550 | Msa0720280 | 0.806341 | 8.621146e-50 | -8.615850e-47 |
| Msa0349550 | Msa0731780 | 0.810595 | 1.066319e-50 | -8.615850e-47 |
| Msa0349550 | Msa0749980 | 0.838641 | 2.549301e-57 | -8.615850e-47 |
| Msa0349550 | Msa0751200 | 0.809531 | 1.807088e-50 | -8.615850e-47 |
| Msa0349550 | Msa0751250 | 0.817770 | 2.774918e-52 | -8.615850e-47 |
| Msa0349550 | Msa0756330 | 0.848306 | 6.666753e-60 | -8.615850e-47 |
| Msa0349550 | Msa0771910 | 0.844237 | 8.560016e-59 | -8.615850e-47 |
| Msa0349550 | Msa0803140 | 0.811106 | 8.264142e-51 | -8.615850e-47 |
| Msa0349550 | Msa0816080 | 0.815574 | 8.624284e-52 | -8.615850e-47 |
| Msa0349550 | Msa0831620 | 0.810846 | 9.408433e-51 | -8.615850e-47 |
| Msa0349550 | Msa0835750 | 0.822636 | 2.130922e-53 | -8.615850e-47 |
| Msa0349550 | Msa0837680 | 0.818981 | 1.475483e-52 | -8.615850e-47 |
| Msa0349550 | Msa0846900 | 0.822243 | 2.629401e-53 | -8.615850e-47 |
| Msa0349550 | Msa0850600 | 0.830118 | 3.514948e-55 | -8.615850e-47 |
| Msa0349550 | Msa0861440 | 0.815123 | 1.086231e-51 | -8.615850e-47 |
| Msa0349550 | Msa0879920 | 0.821597 | 3.711084e-53 | -8.615850e-47 |
| Msa0349550 | Msa0900090 | 0.806817 | 6.842876e-50 | -8.615850e-47 |
| Msa0349550 | Msa0926310 | 0.802745 | 4.848785e-49 | -8.615850e-47 |
| Msa0349550 | Msa0976380 | 0.813476 | 2.510725e-51 | -8.615850e-47 |
| Msa0349550 | Msa0989510 | 0.810300 | 1.234598e-50 | -8.615850e-47 |
| Msa0349550 | Msa0989520 | 0.810523 | 1.104686e-50 | -8.615850e-47 |
| Msa0349550 | Msa1000780 | 0.800925 | 1.146410e-48 | -8.615850e-47 |
| Msa0349550 | Msa1021560 | 0.824430 | 8.104932e-54 | -8.615850e-47 |
| Msa0349550 | Msa1033920 | 0.803573 | 3.269156e-49 | -8.615850e-47 |
| Msa0349550 | Msa1078990 | 0.811831 | 5.750719e-51 | -8.615850e-47 |
| Msa0349550 | Msa1104110 | 0.827419 | 1.580828e-54 | -8.615850e-47 |
| Msa0349550 | Msa1106220 | 0.802272 | 6.068692e-49 | -8.615850e-47 |
| Msa0349550 | Msa1124210 | 0.819169 | 1.337560e-52 | -8.615850e-47 |
| Msa0349550 | Msa1147700 | 0.804930 | 1.705028e-49 | -8.615850e-47 |
| Msa0349550 | Msa1148930 | 0.806965 | 6.366637e-50 | -8.615850e-47 |
| Msa0349550 | Msa1163180 | 0.805896 | 1.069778e-49 | -8.615850e-47 |
| Msa0349550 | Msa1169690 | 0.814034 | 1.891653e-51 | -8.615850e-47 |
| Msa0349550 | Msa1188340 | 0.876179 | 1.714686e-68 | -8.615850e-47 |
| Msa0349550 | Msa1191000 | 0.804975 | 1.668990e-49 | -8.615850e-47 |
| Msa0349550 | Msa1201540 | 0.806308 | 8.760741e-50 | -8.615850e-47 |
| Msa0349550 | Msa1201780 | 0.825844 | 3.756034e-54 | -8.615850e-47 |
| Msa0349550 | Msa1206040 | 0.843750 | 1.156177e-58 | -8.615850e-47 |
| Msa0349550 | Msa1213830 | 0.822075 | 2.875911e-53 | -8.615850e-47 |
| Msa0349550 | Msa1215980 | 0.818061 | 2.385901e-52 | -8.615850e-47 |
| Msa0349550 | Msa1223390 | 0.801419 | 9.083182e-49 | -8.615850e-47 |
| Msa0349550 | Msa1240940 | 0.889803 | 1.745327e-73 | -8.615850e-47 |
| Msa0349550 | Msa1252790 | 0.809408 | 1.920767e-50 | -8.615850e-47 |
| Msa0349550 | Msa1254420 | 0.843500 | 1.348543e-58 | -8.615850e-47 |
| Msa0349550 | Msa1254540 | 0.820430 | 6.887446e-53 | -8.615850e-47 |
| Msa0349550 | Msa1263740 | 0.841927 | 3.531635e-58 | -8.615850e-47 |
| Msa0349550 | Msa1263780 | 0.835012 | 2.149876e-56 | -8.615850e-47 |
| Msa0349550 | Msa1279120 | 0.808226 | 3.436357e-50 | -8.615850e-47 |
| Msa0349550 | Msa1282300 | 0.900513 | 6.799145e-78 | -8.615850e-47 |
| Msa0349550 | Msa1294460 | 0.828379 | 9.288635e-55 | -8.615850e-47 |
| Msa0349550 | Msa1294790 | 0.857441 | 1.629016e-62 | -8.615850e-47 |
| Msa0349550 | Msa1297070 | 0.835336 | 1.780487e-56 | -8.615850e-47 |
| Msa0349550 | Msa1300460 | 0.815553 | 8.714629e-52 | -8.615850e-47 |
| Msa0349550 | Msa1301820 | 0.805714 | 1.168400e-49 | -8.615850e-47 |
| Msa0349550 | Msa1305920 | 0.818304 | 2.101495e-52 | -8.615850e-47 |
| Msa0349550 | Msa1306570 | 0.816914 | 4.326297e-52 | -8.615850e-47 |
| Msa0349550 | Msa1321530 | 0.871794 | 5.210534e-67 | -8.615850e-47 |
| Msa0349550 | Msa1328870 | 0.839459 | 1.565093e-57 | -8.615850e-47 |
| Msa0349550 | Msa1332950 | 0.828323 | 9.585000e-55 | -8.615850e-47 |
| Msa0349550 | Msa1339170 | 0.812097 | 5.031526e-51 | -8.615850e-47 |
| Msa0349550 | Msa1339230 | 0.800997 | 1.108338e-48 | -8.615850e-47 |
| Msa0349550 | Msa1342810 | 0.821265 | 4.426112e-53 | -8.615850e-47 |
| Msa0349550 | Msa1362610 | 0.861439 | 1.024926e-63 | -8.615850e-47 |
| Msa0349550 | Msa1364680 | 0.803493 | 3.396337e-49 | -8.615850e-47 |
| Msa0349550 | Msa1365500 | 0.810334 | 1.213736e-50 | -8.615850e-47 |
| Msa0349550 | Msa1367520 | 0.857273 | 1.826073e-62 | -8.615850e-47 |
| Msa0349550 | Msa1375350 | 0.815611 | 8.461618e-52 | -8.615850e-47 |
| Msa0349550 | Msa1376310 | 0.801074 | 1.068957e-48 | -8.615850e-47 |
| Msa0349550 | Msa1387500 | 0.809056 | 2.285165e-50 | -8.615850e-47 |
| Msa0349550 | Msa1393560 | 0.810191 | 1.303259e-50 | -8.615850e-47 |
| Msa0349550 | Msa1402010 | 0.814388 | 1.580716e-51 | -8.615850e-47 |
| Msa0349550 | Msa1406720 | 0.836079 | 1.154880e-56 | -8.615850e-47 |
| Msa0349550 | Msa1424590 | 0.869262 | 3.532599e-66 | -8.615850e-47 |
| Msa0349550 | Msa1426320 | 0.812419 | 4.279267e-51 | -8.615850e-47 |
| Msa0349550 | Msa1432520 | 0.834637 | 2.671010e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349550 | MtrunA17_Chr1g0164401 | 97.902 | 429 | 9 | 0 | 10 | 438 | 1 | 429 | 0.0 | 856 |
| Msa0349550 | MtrunA17_Chr8g0353261 | 81.542 | 428 | 78 | 1 | 12 | 438 | 7 | 434 | 0.0 | 701 |
| Msa0349550 | MtrunA17_Chr3g0082281 | 96.763 | 278 | 9 | 0 | 161 | 438 | 43 | 320 | 0.0 | 547 |
| Msa0349550 | MtrunA17_Chr3g0133071 | 53.636 | 440 | 187 | 9 | 10 | 437 | 3 | 437 | 4.33e-143 | 416 |
| Msa0349550 | MtrunA17_Chr3g0082301 | 98.958 | 96 | 1 | 0 | 67 | 162 | 1 | 96 | 5.10e-63 | 199 |
| Msa0349550 | MtrunA17_Chr3g0130931 | 30.719 | 459 | 264 | 15 | 3 | 430 | 6 | 441 | 3.60e-55 | 189 |
| Msa0349550 | MtrunA17_Chr1g0212321 | 34.857 | 350 | 210 | 8 | 99 | 437 | 144 | 486 | 7.12e-54 | 187 |
| Msa0349550 | MtrunA17_Chr7g0275731 | 35.143 | 350 | 212 | 6 | 99 | 437 | 139 | 484 | 6.29e-51 | 179 |
| Msa0349550 | MtrunA17_Chr3g0099891 | 29.157 | 415 | 263 | 12 | 38 | 437 | 56 | 454 | 9.21e-49 | 172 |
| Msa0349550 | MtrunA17_Chr1g0210201 | 31.343 | 402 | 242 | 10 | 55 | 437 | 81 | 467 | 2.19e-46 | 166 |
| Msa0349550 | MtrunA17_Chr4g0001991 | 32.361 | 377 | 211 | 14 | 88 | 438 | 160 | 518 | 5.06e-46 | 166 |
| Msa0349550 | MtrunA17_Chr1g0165201 | 33.811 | 349 | 216 | 7 | 99 | 437 | 126 | 469 | 1.90e-45 | 164 |
| Msa0349550 | MtrunA17_Chr2g0291201 | 31.049 | 467 | 258 | 19 | 17 | 437 | 3 | 451 | 3.84e-45 | 162 |
| Msa0349550 | MtrunA17_Chr3g0095891 | 33.690 | 374 | 203 | 11 | 99 | 437 | 95 | 458 | 2.48e-43 | 158 |
| Msa0349550 | MtrunA17_Chr6g0484901 | 34.104 | 346 | 207 | 10 | 102 | 437 | 157 | 491 | 1.02e-42 | 157 |
| Msa0349550 | MtrunA17_Chr8g0390761 | 29.395 | 347 | 226 | 9 | 102 | 437 | 117 | 455 | 4.43e-42 | 154 |
| Msa0349550 | MtrunA17_Chr3g0099901 | 30.137 | 438 | 256 | 16 | 38 | 437 | 60 | 485 | 2.22e-39 | 147 |
| Msa0349550 | MtrunA17_Chr5g0442921 | 32.432 | 370 | 214 | 13 | 99 | 437 | 189 | 553 | 6.28e-39 | 147 |
| Msa0349550 | MtrunA17_Chr5g0415951 | 29.646 | 452 | 278 | 17 | 10 | 438 | 1 | 435 | 9.99e-39 | 145 |
| Msa0349550 | MtrunA17_Chr6g0457401 | 29.861 | 432 | 263 | 16 | 32 | 438 | 21 | 437 | 4.13e-38 | 143 |
| Msa0349550 | MtrunA17_Chr2g0310831 | 28.738 | 428 | 264 | 16 | 37 | 438 | 29 | 441 | 1.47e-37 | 142 |
| Msa0349550 | MtrunA17_Chr3g0110191 | 29.558 | 362 | 219 | 15 | 103 | 438 | 88 | 439 | 1.11e-36 | 139 |
| Msa0349550 | MtrunA17_Chr2g0310821 | 27.991 | 443 | 280 | 16 | 15 | 438 | 21 | 443 | 1.36e-35 | 136 |
| Msa0349550 | MtrunA17_Chr4g0056211 | 30.175 | 401 | 210 | 15 | 102 | 437 | 75 | 470 | 3.08e-35 | 136 |
| Msa0349550 | MtrunA17_Chr7g0239001 | 29.189 | 370 | 220 | 14 | 104 | 437 | 62 | 425 | 1.08e-34 | 134 |
| Msa0349550 | MtrunA17_Chr5g0435871 | 26.872 | 454 | 287 | 16 | 6 | 438 | 6 | 435 | 2.22e-34 | 133 |
| Msa0349550 | MtrunA17_Chr3g0087851 | 27.356 | 435 | 270 | 17 | 32 | 438 | 21 | 437 | 2.68e-34 | 132 |
| Msa0349550 | MtrunA17_Chr5g0435971 | 27.123 | 424 | 271 | 15 | 36 | 438 | 26 | 432 | 2.48e-33 | 130 |
| Msa0349550 | MtrunA17_Chr8g0386441 | 26.244 | 442 | 291 | 15 | 14 | 438 | 7 | 430 | 5.79e-33 | 129 |
| Msa0349550 | MtrunA17_Chr5g0434411 | 28.997 | 369 | 216 | 16 | 103 | 438 | 83 | 438 | 7.58e-33 | 129 |
| Msa0349550 | MtrunA17_Chr2g0310801 | 27.778 | 450 | 281 | 16 | 15 | 438 | 3 | 434 | 4.45e-32 | 126 |
| Msa0349550 | MtrunA17_Chr7g0267171 | 29.091 | 385 | 214 | 14 | 102 | 437 | 91 | 465 | 5.35e-32 | 127 |
| Msa0349550 | MtrunA17_Chr5g0399171 | 28.087 | 413 | 224 | 15 | 88 | 437 | 67 | 469 | 8.65e-32 | 126 |
| Msa0349550 | MtrunA17_Chr8g0352671 | 27.152 | 453 | 277 | 19 | 14 | 438 | 10 | 437 | 2.63e-31 | 124 |
| Msa0349550 | MtrunA17_Chr8g0352661 | 27.152 | 453 | 285 | 18 | 13 | 438 | 3 | 437 | 6.03e-30 | 120 |
| Msa0349550 | MtrunA17_Chr3g0112051 | 28.415 | 366 | 204 | 15 | 101 | 437 | 73 | 409 | 6.03e-30 | 120 |
| Msa0349550 | MtrunA17_Chr5g0395911 | 31.081 | 370 | 221 | 16 | 94 | 438 | 54 | 414 | 9.08e-30 | 119 |
| Msa0349550 | MtrunA17_Chr2g0307991 | 29.223 | 373 | 217 | 17 | 97 | 438 | 49 | 405 | 3.55e-29 | 118 |
| Msa0349550 | MtrunA17_Chr2g0308001 | 28.883 | 367 | 225 | 15 | 97 | 438 | 54 | 409 | 2.64e-28 | 116 |
| Msa0349550 | MtrunA17_Chr5g0395931 | 28.678 | 401 | 225 | 16 | 77 | 438 | 58 | 436 | 6.57e-27 | 112 |
| Msa0349550 | MtrunA17_Chr5g0419291 | 26.684 | 386 | 247 | 16 | 36 | 400 | 26 | 396 | 1.78e-26 | 110 |
| Msa0349550 | MtrunA17_Chr6g0487471 | 26.949 | 449 | 286 | 18 | 12 | 438 | 7 | 435 | 6.60e-26 | 109 |
| Msa0349550 | MtrunA17_Chr5g0434441 | 29.810 | 369 | 215 | 17 | 103 | 438 | 70 | 427 | 1.09e-25 | 108 |
| Msa0349550 | MtrunA17_Chr2g0311451 | 25.442 | 452 | 288 | 20 | 14 | 438 | 7 | 436 | 2.80e-25 | 107 |
| Msa0349550 | MtrunA17_Chr2g0333991 | 28.000 | 350 | 207 | 16 | 102 | 424 | 89 | 420 | 3.33e-25 | 107 |
| Msa0349550 | MtrunA17_Chr4g0027681 | 25.728 | 412 | 252 | 19 | 66 | 438 | 41 | 437 | 7.43e-25 | 106 |
| Msa0349550 | MtrunA17_Chr2g0320621 | 25.666 | 413 | 251 | 18 | 66 | 438 | 42 | 438 | 1.65e-24 | 105 |
| Msa0349550 | MtrunA17_Chr2g0312941 | 28.418 | 373 | 215 | 13 | 99 | 430 | 85 | 446 | 2.30e-24 | 105 |
| Msa0349550 | MtrunA17_Chr2g0309561 | 25.708 | 459 | 243 | 21 | 62 | 437 | 65 | 508 | 6.86e-24 | 103 |
| Msa0349550 | MtrunA17_Chr5g0401601 | 25.745 | 369 | 224 | 19 | 102 | 438 | 89 | 439 | 7.33e-24 | 104 |
| Msa0349550 | MtrunA17_Chr5g0406001 | 29.144 | 374 | 202 | 17 | 102 | 437 | 113 | 461 | 1.11e-23 | 103 |
| Msa0349550 | MtrunA17_Chr6g0486981 | 25.778 | 450 | 274 | 19 | 20 | 438 | 17 | 437 | 1.43e-23 | 102 |
| Msa0349550 | MtrunA17_Chr4g0023351 | 32.218 | 239 | 139 | 10 | 77 | 293 | 29 | 266 | 2.23e-22 | 96.7 |
| Msa0349550 | MtrunA17_Chr1g0179751 | 24.480 | 433 | 265 | 19 | 51 | 438 | 55 | 470 | 9.22e-22 | 97.8 |
| Msa0349550 | MtrunA17_Chr7g0265331 | 25.594 | 379 | 221 | 19 | 102 | 438 | 82 | 441 | 1.31e-21 | 97.1 |
| Msa0349550 | MtrunA17_Chr2g0307461 | 28.650 | 363 | 211 | 17 | 102 | 428 | 71 | 421 | 2.22e-21 | 95.9 |
| Msa0349550 | MtrunA17_Chr1g0179091 | 27.874 | 348 | 208 | 15 | 102 | 438 | 52 | 367 | 2.96e-21 | 94.7 |
| Msa0349550 | MtrunA17_Chr1g0189381 | 25.737 | 373 | 229 | 18 | 102 | 438 | 70 | 430 | 1.09e-20 | 94.4 |
| Msa0349550 | MtrunA17_Chr4g0053721 | 25.137 | 366 | 228 | 19 | 102 | 437 | 81 | 430 | 1.21e-20 | 94.7 |
| Msa0349550 | MtrunA17_Chr7g0221681 | 26.649 | 379 | 219 | 18 | 102 | 438 | 73 | 434 | 1.54e-20 | 94.0 |
| Msa0349550 | MtrunA17_Chr7g0249451 | 26.273 | 373 | 226 | 18 | 102 | 438 | 72 | 431 | 2.84e-20 | 92.8 |
| Msa0349550 | MtrunA17_Chr5g0395871 | 26.862 | 443 | 247 | 21 | 32 | 438 | 24 | 425 | 1.29e-19 | 90.5 |
| Msa0349550 | MtrunA17_Chr5g0425141 | 26.039 | 361 | 217 | 12 | 108 | 437 | 108 | 449 | 3.52e-18 | 86.7 |
| Msa0349550 | MtrunA17_Chr4g0061641 | 28.075 | 374 | 235 | 15 | 84 | 438 | 39 | 397 | 1.13e-17 | 84.7 |
| Msa0349550 | MtrunA17_Chr3g0124421 | 26.287 | 369 | 209 | 17 | 108 | 437 | 106 | 450 | 1.93e-17 | 84.7 |
| Msa0349550 | MtrunA17_Chr8g0352691 | 30.290 | 241 | 144 | 8 | 187 | 418 | 15 | 240 | 5.54e-17 | 80.5 |
| Msa0349550 | MtrunA17_Chr1g0159791 | 26.685 | 371 | 218 | 17 | 102 | 437 | 58 | 409 | 3.68e-16 | 80.1 |
| Msa0349550 | MtrunA17_Chr4g0010951 | 29.278 | 263 | 139 | 13 | 102 | 336 | 62 | 305 | 1.35e-15 | 78.6 |
| Msa0349550 | MtrunA17_Chr3g0078321 | 24.138 | 377 | 224 | 17 | 102 | 438 | 59 | 413 | 2.67e-15 | 77.4 |
| Msa0349550 | MtrunA17_Chr3g0130741 | 25.600 | 375 | 217 | 18 | 102 | 438 | 85 | 435 | 1.87e-14 | 75.1 |
| Msa0349550 | MtrunA17_Chr2g0287821 | 22.146 | 438 | 280 | 16 | 54 | 436 | 11 | 442 | 2.40e-14 | 74.7 |
| Msa0349550 | MtrunA17_Chr8g0384731 | 25.694 | 432 | 255 | 24 | 46 | 438 | 21 | 425 | 8.38e-14 | 73.2 |
| Msa0349550 | MtrunA17_Chr2g0287861 | 22.561 | 328 | 212 | 13 | 108 | 397 | 50 | 373 | 1.32e-12 | 69.3 |
| Msa0349550 | MtrunA17_Chr1g0185661 | 24.138 | 348 | 197 | 13 | 146 | 436 | 81 | 418 | 3.50e-12 | 68.9 |
| Msa0349550 | MtrunA17_Chr1g0185661 | 22.995 | 374 | 232 | 15 | 110 | 436 | 706 | 1070 | 3.79e-11 | 65.5 |
| Msa0349550 | MtrunA17_Chr5g0419151 | 27.612 | 268 | 167 | 9 | 185 | 438 | 114 | 368 | 1.96e-11 | 65.5 |
| Msa0349550 | MtrunA17_Chr2g0287811 | 24.682 | 393 | 219 | 19 | 102 | 436 | 40 | 413 | 2.67e-11 | 65.1 |
| Msa0349550 | MtrunA17_Chr4g0065581 | 22.967 | 418 | 240 | 16 | 87 | 436 | 38 | 441 | 3.47e-11 | 65.1 |
| Msa0349550 | MtrunA17_Chr1g0185651 | 24.129 | 402 | 215 | 18 | 102 | 436 | 57 | 435 | 6.77e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349550 | AT5G07030.1 | 70.295 | 441 | 122 | 6 | 6 | 438 | 16 | 455 | 0.0 | 602 |
| Msa0349550 | AT3G54400.1 | 68.447 | 412 | 120 | 6 | 30 | 438 | 21 | 425 | 0.0 | 571 |
| Msa0349550 | AT1G09750.1 | 51.799 | 417 | 185 | 8 | 35 | 437 | 34 | 448 | 5.16e-141 | 411 |
| Msa0349550 | AT5G10770.1 | 31.616 | 427 | 254 | 13 | 38 | 438 | 60 | 474 | 7.73e-53 | 184 |
| Msa0349550 | AT3G25700.1 | 33.088 | 408 | 232 | 13 | 66 | 437 | 47 | 449 | 1.47e-51 | 180 |
| Msa0349550 | AT1G01300.1 | 33.807 | 352 | 214 | 8 | 99 | 437 | 139 | 484 | 1.57e-50 | 178 |
| Msa0349550 | AT3G61820.1 | 35.393 | 356 | 209 | 7 | 99 | 437 | 132 | 483 | 3.94e-50 | 177 |
| Msa0349550 | AT2G03200.1 | 31.461 | 356 | 212 | 9 | 99 | 430 | 104 | 451 | 5.61e-50 | 176 |
| Msa0349550 | AT5G10760.1 | 32.936 | 419 | 245 | 12 | 38 | 437 | 63 | 464 | 1.79e-48 | 172 |
| Msa0349550 | AT3G20015.1 | 33.714 | 350 | 214 | 8 | 99 | 437 | 128 | 470 | 2.95e-48 | 172 |
| Msa0349550 | AT3G18490.1 | 33.333 | 360 | 220 | 10 | 89 | 437 | 150 | 500 | 4.28e-45 | 164 |
| Msa0349550 | AT1G25510.1 | 30.670 | 388 | 237 | 10 | 73 | 437 | 105 | 483 | 1.04e-42 | 157 |
| Msa0349550 | AT1G79720.1 | 30.585 | 376 | 220 | 14 | 88 | 437 | 122 | 482 | 1.13e-39 | 149 |
| Msa0349550 | AT5G45120.1 | 30.500 | 400 | 210 | 15 | 102 | 437 | 83 | 478 | 3.50e-39 | 147 |
| Msa0349550 | AT3G52500.1 | 30.649 | 385 | 213 | 13 | 102 | 438 | 90 | 468 | 3.80e-39 | 147 |
| Msa0349550 | AT1G66180.1 | 30.424 | 401 | 234 | 18 | 72 | 438 | 38 | 427 | 4.13e-39 | 146 |
| Msa0349550 | AT5G37540.1 | 29.825 | 399 | 231 | 18 | 77 | 437 | 51 | 438 | 1.07e-37 | 142 |
| Msa0349550 | AT3G59080.1 | 28.929 | 439 | 243 | 14 | 63 | 437 | 99 | 532 | 6.08e-35 | 136 |
| Msa0349550 | AT2G42980.1 | 30.311 | 386 | 231 | 13 | 85 | 437 | 144 | 524 | 1.02e-34 | 135 |
| Msa0349550 | AT2G39710.1 | 30.458 | 371 | 212 | 16 | 101 | 433 | 64 | 426 | 1.29e-34 | 134 |
| Msa0349550 | AT1G64830.1 | 29.108 | 426 | 259 | 16 | 36 | 438 | 24 | 429 | 1.87e-34 | 133 |
| Msa0349550 | AT5G33340.1 | 27.833 | 406 | 261 | 15 | 37 | 424 | 30 | 421 | 7.22e-30 | 120 |
| Msa0349550 | AT4G30030.1 | 28.647 | 377 | 235 | 15 | 78 | 437 | 60 | 419 | 8.45e-29 | 117 |
| Msa0349550 | AT5G22850.1 | 26.005 | 423 | 255 | 19 | 57 | 438 | 36 | 441 | 1.56e-28 | 117 |
| Msa0349550 | AT5G02190.1 | 28.338 | 367 | 217 | 15 | 111 | 437 | 82 | 442 | 5.17e-28 | 115 |
| Msa0349550 | AT1G08210.1 | 27.952 | 415 | 255 | 15 | 57 | 438 | 38 | 441 | 5.93e-28 | 116 |
| Msa0349550 | AT3G59080.2 | 28.000 | 425 | 229 | 13 | 63 | 437 | 99 | 496 | 9.21e-28 | 115 |
| Msa0349550 | AT1G08210.4 | 27.952 | 415 | 255 | 15 | 57 | 438 | 72 | 475 | 9.73e-28 | 115 |
| Msa0349550 | AT4G30040.1 | 28.141 | 398 | 235 | 16 | 64 | 430 | 48 | 425 | 1.00e-27 | 114 |
| Msa0349550 | AT1G08210.3 | 27.952 | 415 | 255 | 15 | 57 | 438 | 86 | 489 | 1.07e-27 | 115 |
| Msa0349550 | AT2G23945.1 | 26.683 | 416 | 254 | 17 | 57 | 437 | 49 | 448 | 2.55e-27 | 114 |
| Msa0349550 | AT3G12700.1 | 28.125 | 416 | 250 | 16 | 56 | 438 | 62 | 461 | 5.76e-27 | 112 |
| Msa0349550 | AT3G02740.1 | 27.833 | 406 | 240 | 19 | 67 | 438 | 54 | 440 | 1.43e-26 | 112 |
| Msa0349550 | AT3G02740.2 | 28.571 | 371 | 216 | 18 | 102 | 438 | 10 | 365 | 4.18e-26 | 109 |
| Msa0349550 | AT1G08210.2 | 29.620 | 368 | 219 | 13 | 57 | 392 | 38 | 397 | 1.84e-25 | 108 |
| Msa0349550 | AT5G43100.2 | 25.337 | 371 | 229 | 17 | 95 | 438 | 69 | 418 | 7.26e-25 | 107 |
| Msa0349550 | AT5G43100.1 | 25.824 | 364 | 222 | 17 | 102 | 438 | 76 | 418 | 8.94e-25 | 107 |
| Msa0349550 | AT2G28030.1 | 27.742 | 310 | 190 | 11 | 102 | 397 | 61 | 350 | 4.76e-23 | 100 |
| Msa0349550 | AT4G16563.1 | 27.635 | 427 | 222 | 16 | 88 | 437 | 75 | 491 | 1.31e-22 | 100 |
| Msa0349550 | AT3G50050.1 | 27.123 | 365 | 218 | 18 | 102 | 438 | 93 | 437 | 1.57e-22 | 100 |
| Msa0349550 | AT2G28040.2 | 27.507 | 349 | 203 | 16 | 96 | 424 | 50 | 368 | 1.96e-22 | 99.0 |
| Msa0349550 | AT2G28040.1 | 27.507 | 349 | 203 | 16 | 96 | 424 | 59 | 377 | 2.72e-22 | 98.6 |
| Msa0349550 | AT5G36260.1 | 24.457 | 368 | 236 | 17 | 102 | 438 | 78 | 434 | 4.90e-22 | 98.6 |
| Msa0349550 | AT2G35615.1 | 27.273 | 473 | 274 | 22 | 7 | 438 | 1 | 444 | 8.93e-22 | 97.8 |
| Msa0349550 | AT2G36670.2 | 23.488 | 430 | 273 | 17 | 51 | 438 | 43 | 458 | 9.48e-22 | 98.2 |
| Msa0349550 | AT1G05840.1 | 27.614 | 373 | 221 | 18 | 102 | 438 | 80 | 439 | 1.05e-21 | 97.8 |
| Msa0349550 | AT2G36670.4 | 24.397 | 373 | 232 | 16 | 102 | 438 | 34 | 392 | 1.37e-21 | 97.1 |
| Msa0349550 | AT2G36670.3 | 24.397 | 373 | 232 | 16 | 102 | 438 | 34 | 392 | 1.37e-21 | 97.1 |
| Msa0349550 | AT2G28225.1 | 28.329 | 353 | 199 | 17 | 102 | 430 | 67 | 389 | 2.36e-21 | 95.9 |
| Msa0349550 | AT2G36670.1 | 24.397 | 373 | 232 | 16 | 102 | 438 | 105 | 463 | 2.90e-21 | 96.7 |
| Msa0349550 | AT1G31450.1 | 27.231 | 437 | 257 | 19 | 39 | 438 | 30 | 442 | 3.67e-21 | 95.9 |
| Msa0349550 | AT2G28010.1 | 25.439 | 342 | 220 | 12 | 96 | 424 | 59 | 378 | 5.02e-21 | 94.7 |
| Msa0349550 | AT1G65240.1 | 24.804 | 383 | 241 | 18 | 88 | 438 | 60 | 427 | 7.89e-19 | 89.0 |
| Msa0349550 | AT3G51350.1 | 26.455 | 378 | 209 | 17 | 102 | 437 | 102 | 452 | 2.43e-18 | 87.8 |
| Msa0349550 | AT3G25700.2 | 34.659 | 176 | 90 | 8 | 66 | 219 | 47 | 219 | 6.40e-18 | 85.1 |
| Msa0349550 | AT3G25700.2 | 33.588 | 131 | 79 | 2 | 313 | 437 | 219 | 347 | 2.88e-11 | 65.1 |
| Msa0349550 | AT2G28220.1 | 26.513 | 347 | 202 | 15 | 102 | 424 | 67 | 384 | 2.08e-17 | 84.3 |
| Msa0349550 | AT3G51340.2 | 25.337 | 371 | 216 | 15 | 102 | 437 | 103 | 447 | 6.38e-17 | 83.2 |
| Msa0349550 | AT3G51360.9 | 24.044 | 366 | 229 | 14 | 102 | 437 | 99 | 445 | 3.54e-15 | 77.8 |
| Msa0349550 | AT1G77480.1 | 26.984 | 378 | 209 | 21 | 102 | 437 | 67 | 419 | 4.08e-15 | 77.8 |
| Msa0349550 | AT1G77480.2 | 26.984 | 378 | 209 | 21 | 102 | 437 | 67 | 419 | 4.20e-15 | 77.4 |
| Msa0349550 | AT3G51360.7 | 23.562 | 365 | 232 | 12 | 102 | 437 | 5 | 351 | 4.83e-15 | 77.0 |
| Msa0349550 | AT3G51360.1 | 23.836 | 365 | 231 | 13 | 102 | 437 | 89 | 435 | 5.08e-15 | 77.4 |
| Msa0349550 | AT2G17760.1 | 24.112 | 394 | 231 | 18 | 85 | 437 | 83 | 449 | 5.26e-15 | 77.4 |
| Msa0349550 | AT4G33490.2 | 24.599 | 374 | 210 | 17 | 102 | 431 | 60 | 405 | 8.40e-15 | 76.3 |
| Msa0349550 | AT5G10080.1 | 23.301 | 412 | 258 | 15 | 66 | 437 | 60 | 453 | 1.30e-14 | 76.3 |
| Msa0349550 | AT4G33490.1 | 28.090 | 267 | 146 | 14 | 102 | 345 | 57 | 300 | 5.80e-14 | 73.6 |
| Msa0349550 | AT4G12920.1 | 22.034 | 354 | 234 | 13 | 102 | 437 | 58 | 387 | 6.85e-14 | 73.6 |
| Msa0349550 | AT3G51360.6 | 24.340 | 341 | 209 | 14 | 102 | 412 | 99 | 420 | 1.09e-12 | 70.1 |
| Msa0349550 | AT3G51360.10 | 24.340 | 341 | 209 | 14 | 102 | 412 | 89 | 410 | 1.42e-12 | 69.7 |
| Msa0349550 | AT1G44130.1 | 25.714 | 385 | 203 | 19 | 102 | 437 | 49 | 399 | 3.42e-12 | 68.2 |
| Msa0349550 | AT3G51360.5 | 25.155 | 322 | 192 | 14 | 108 | 399 | 105 | 407 | 4.43e-12 | 68.2 |
| Msa0349550 | AT3G51360.4 | 25.155 | 322 | 192 | 14 | 108 | 399 | 95 | 397 | 5.89e-12 | 67.4 |
| Msa0349550 | AT1G03220.1 | 22.603 | 438 | 244 | 17 | 50 | 436 | 24 | 417 | 3.67e-11 | 65.1 |
| Msa0349550 | AT3G51360.2 | 25.954 | 262 | 151 | 12 | 102 | 339 | 99 | 341 | 4.10e-11 | 64.7 |
| Msa0349550 | AT3G42550.1 | 20.343 | 408 | 262 | 13 | 51 | 438 | 26 | 390 | 4.19e-11 | 65.1 |
| Msa0349550 | AT1G03230.1 | 24.242 | 363 | 228 | 16 | 117 | 436 | 60 | 418 | 6.38e-11 | 64.3 |
Find 175 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATTTCAAAAGACCAATT+TGG | 0.181501 | 3_1:+13407983 | None:intergenic |
| ATGTTAACTTGGAAGCAATT+AGG | 0.215956 | 3_1:+13411557 | Msa0349550:CDS |
| ATGTGGACTGATAGAGGTTT+TGG | 0.221853 | 3_1:-13411405 | None:intergenic |
| TACATTGTTAGGGCTAAAAT+TGG | 0.237202 | 3_1:+13408357 | Msa0349550:CDS |
| AGAGTCCAACTTACATTGTT+AGG | 0.250009 | 3_1:+13408346 | Msa0349550:CDS |
| TCGTGCAAGTTCACGGGTTA+TGG | 0.253778 | 3_1:+13412568 | Msa0349550:three_prime_UTR |
| ATTAAACCCATGAATATAAA+TGG | 0.257380 | 3_1:-13412311 | None:intergenic |
| TCCCATGAAAGTGGCTTTGA+TGG | 0.283362 | 3_1:-13408213 | None:intergenic |
| TTCAAGTCTCTTAACTTCTC+TGG | 0.284577 | 3_1:+13411448 | Msa0349550:CDS |
| AGTGGCTTTGATGGCCTAAA+TGG | 0.286534 | 3_1:-13408204 | None:intergenic |
| TGCCCCACCACAAGGTCTAT+TGG | 0.290920 | 3_1:+13411345 | Msa0349550:CDS |
| TTGTTTGGGTAATGGTAATA+TGG | 0.291779 | 3_1:+13412284 | Msa0349550:three_prime_UTR |
| GTTATTGTGGGTACAACTAT+TGG | 0.294174 | 3_1:-13411999 | None:intergenic |
| TTGTCTTGGACATCACATTT+GGG | 0.295714 | 3_1:-13408138 | None:intergenic |
| TAGTTGTTATGGTGAGATTT+TGG | 0.297323 | 3_1:-13408059 | None:intergenic |
| TAATAGAGAGATGATCTTCT+AGG | 0.303672 | 3_1:-13411535 | None:intergenic |
| GGCCAAACACGTGGTGCTTC+CGG | 0.313047 | 3_1:-13412084 | None:intergenic |
| ACTTCAATTCCTTGATAGTT+TGG | 0.314174 | 3_1:+13408275 | Msa0349550:CDS |
| TGTTAACTTGGAAGCAATTA+GGG | 0.316746 | 3_1:+13411558 | Msa0349550:CDS |
| GTGGCATTAGAAAAGTTGTT+TGG | 0.319803 | 3_1:+13412269 | Msa0349550:three_prime_UTR |
| TTGAAGTCTAGTTGTGTCTT+TGG | 0.320386 | 3_1:-13408259 | None:intergenic |
| TGGTACTCCATTTATATTCA+TGG | 0.320399 | 3_1:+13412304 | Msa0349550:three_prime_UTR |
| ACCACAAGGTCTATTGGGCT+TGG | 0.324083 | 3_1:+13411351 | Msa0349550:CDS |
| TTAGCCCATGTTCCCCATTT+AGG | 0.324383 | 3_1:+13408190 | Msa0349550:CDS |
| ATTTAATCCACACACAAATA+TGG | 0.325286 | 3_1:-13412394 | None:intergenic |
| GCTGGTACCATCTTTGATTC+AGG | 0.329963 | 3_1:+13411640 | Msa0349550:CDS |
| GAGCTATGTACTTAATAAAA+TGG | 0.330687 | 3_1:+13412221 | Msa0349550:exon |
| ATTGTCTTGGACATCACATT+TGG | 0.331624 | 3_1:-13408139 | None:intergenic |
| TCAATTGTACCTATTGCTTC+TGG | 0.339113 | 3_1:+13408309 | Msa0349550:CDS |
| ATCCTCTTGGGCTGAGCAAC+AGG | 0.341409 | 3_1:-13411487 | None:intergenic |
| GCAACACCAACCCTAGAGTT+AGG | 0.342924 | 3_1:-13412194 | None:intergenic |
| TTATTTCAAAAGACCAATTT+GGG | 0.345523 | 3_1:+13407984 | None:intergenic |
| TGGGGTTTAGTCCTTGGACT+AGG | 0.351891 | 3_1:-13408119 | None:intergenic |
| TCCACCTCAAACTTTGCTTT+TGG | 0.353103 | 3_1:+13408383 | Msa0349550:CDS |
| CACATTTGGGGTTTAGTCCT+TGG | 0.354918 | 3_1:-13408125 | None:intergenic |
| GCCCCACCACAAGGTCTATT+GGG | 0.360432 | 3_1:+13411346 | Msa0349550:CDS |
| TTGTGTCTTTGGCTTGCATT+TGG | 0.373872 | 3_1:-13408248 | None:intergenic |
| CCGAATGTGTAGCTAGGAAC+TGG | 0.381713 | 3_1:-13411295 | None:intergenic |
| AGGGGTATATTTAATCCTCT+TGG | 0.381907 | 3_1:-13411500 | None:intergenic |
| TGTGAGTTTCATAGTTGTTA+TGG | 0.384279 | 3_1:-13408070 | None:intergenic |
| CGCCGGAAGCACCACGTGTT+TGG | 0.388186 | 3_1:+13412082 | Msa0349550:CDS |
| TAGAAAAGTTGTTTGGGTAA+TGG | 0.389268 | 3_1:+13412276 | Msa0349550:three_prime_UTR |
| TGGGTTTAATATTTAACATA+TGG | 0.391203 | 3_1:+13412324 | Msa0349550:three_prime_UTR |
| GAAAGGGCAAAGACCCAAAT+TGG | 0.401759 | 3_1:-13407997 | None:intergenic |
| CAACACCGAGTTCACGTTAT+CGG | 0.406159 | 3_1:-13412120 | None:intergenic |
| TCAAGTCTCTTAACTTCTCT+GGG | 0.406816 | 3_1:+13411449 | Msa0349550:CDS |
| AGGGATGTCACTGTGAGCTT+TGG | 0.406981 | 3_1:-13411948 | None:intergenic |
| TGGCATTAGAAAAGTTGTTT+GGG | 0.409035 | 3_1:+13412270 | Msa0349550:three_prime_UTR |
| TTATTGTGGGTACAACTATT+GGG | 0.409081 | 3_1:-13411998 | None:intergenic |
| GGCCATCAAAGCCACTTTCA+TGG | 0.410623 | 3_1:+13408211 | Msa0349550:CDS |
| AACACCGAGTTCACGTTATC+GGG | 0.416344 | 3_1:-13412119 | None:intergenic |
| TTCCTCTATTGCAGCTAACT+TGG | 0.417975 | 3_1:+13411243 | Msa0349550:CDS |
| GGCTAAACACATGGATTACT+TGG | 0.418333 | 3_1:-13408173 | None:intergenic |
| TTCTCTGGGTCTTTGAGACT+TGG | 0.418986 | 3_1:+13411463 | Msa0349550:CDS |
| GGTCTATTGGGCTTGGGCCG+AGG | 0.426354 | 3_1:+13411358 | Msa0349550:CDS |
| CTTGGACTAGGGAGAGGAAT+AGG | 0.438297 | 3_1:-13408107 | None:intergenic |
| TACTATATATAGCAAAAGAA+AGG | 0.439490 | 3_1:-13408014 | None:intergenic |
| ATCTCTCTATTATGTTAACT+TGG | 0.439622 | 3_1:+13411546 | Msa0349550:CDS |
| GGATTAAACGCCAATGTGGC+TGG | 0.439884 | 3_1:-13411607 | None:intergenic |
| GGGGTATATTTAATCCTCTT+GGG | 0.444032 | 3_1:-13411499 | None:intergenic |
| TGGCAGTCCGAGATGAGTTC+CGG | 0.455367 | 3_1:+13411913 | Msa0349550:CDS |
| GAGTCCAACTTACATTGTTA+GGG | 0.456447 | 3_1:+13408347 | Msa0349550:CDS |
| GTGGCTTTGATGGCCTAAAT+GGG | 0.457090 | 3_1:-13408203 | None:intergenic |
| TCATTGATGTCCCTAACTCT+AGG | 0.457703 | 3_1:+13412183 | Msa0349550:CDS |
| ATGAGTTCCGGCGAAGAGTT+GGG | 0.460274 | 3_1:+13411925 | Msa0349550:CDS |
| CCACAAGGTCTATTGGGCTT+GGG | 0.462842 | 3_1:+13411352 | Msa0349550:CDS |
| GGTACTCCATTTATATTCAT+GGG | 0.464739 | 3_1:+13412305 | Msa0349550:three_prime_UTR |
| GGGGTTTAGTCCTTGGACTA+GGG | 0.468206 | 3_1:-13408118 | None:intergenic |
| TTGGCGTTTAATCCGACTAC+TGG | 0.468921 | 3_1:+13411616 | Msa0349550:CDS |
| TACCAAGTTAGCTGCAATAG+AGG | 0.469055 | 3_1:-13411245 | None:intergenic |
| TGTCTTTGGCTTGCATTTGG+AGG | 0.469936 | 3_1:-13408245 | None:intergenic |
| TGCTGCTCCTGAATGCAAAC+AGG | 0.470735 | 3_1:+13408515 | Msa0349550:CDS |
| CTCTTCGCCGGAACTCATCT+CGG | 0.473309 | 3_1:-13411920 | None:intergenic |
| TAATTAATCGTGCAAGTTCA+CGG | 0.477436 | 3_1:+13412561 | Msa0349550:three_prime_UTR |
| TTAATATTTAACATATGGTA+AGG | 0.477782 | 3_1:+13412329 | Msa0349550:three_prime_UTR |
| TTGGTTCATTCACTTGACTT+AGG | 0.479938 | 3_1:-13408040 | None:intergenic |
| GTTATCGGGCGCGGCTGCCA+TGG | 0.482151 | 3_1:-13412105 | None:intergenic |
| TTCTAGCTACCAAACTATCA+AGG | 0.482357 | 3_1:-13408284 | None:intergenic |
| TAGAGGAACTGCCATAGGTT+AGG | 0.483289 | 3_1:-13411228 | None:intergenic |
| ATTCCTTGCACTGCTTGTGA+TGG | 0.484236 | 3_1:+13408435 | Msa0349550:CDS |
| TGCAATTTCAACCTAACCTA+TGG | 0.486060 | 3_1:+13411217 | Msa0349550:CDS |
| ATTTGTCTACCAGAAGCAAT+AGG | 0.487565 | 3_1:-13408318 | None:intergenic |
| AGGAACTGGGTCAGTGGCTA+AGG | 0.488633 | 3_1:-13411281 | None:intergenic |
| CATGAGCTCACACCACAACT+AGG | 0.490130 | 3_1:-13411196 | None:intergenic |
| AGCATGTGTCAAACCCTCCT+AGG | 0.490363 | 3_1:-13411968 | None:intergenic |
| TACCAGGTACCGTGTTTACT+CGG | 0.492662 | 3_1:+13411871 | Msa0349550:intron |
| TTAGCCCTAACAATGTAAGT+TGG | 0.493596 | 3_1:-13408351 | None:intergenic |
| GCCATCAAAGCCACTTTCAT+GGG | 0.495343 | 3_1:+13408212 | Msa0349550:CDS |
| AATTAATCGTGCAAGTTCAC+GGG | 0.495787 | 3_1:+13412562 | Msa0349550:three_prime_UTR |
| GATGAGTTCCGGCGAAGAGT+TGG | 0.498005 | 3_1:+13411924 | Msa0349550:CDS |
| TTTGAGACAAAAGTGACAAC+GGG | 0.499233 | 3_1:-13411381 | None:intergenic |
| CATTGATGTCCCTAACTCTA+GGG | 0.503024 | 3_1:+13412184 | Msa0349550:CDS |
| AAGAGAATGTGGACTGATAG+AGG | 0.503256 | 3_1:-13411411 | None:intergenic |
| GCTAGTTGCTCCGGCCTATG+TGG | 0.503999 | 3_1:+13411893 | Msa0349550:CDS |
| ACAAAAGTGACAACGGGCCT+CGG | 0.507840 | 3_1:-13411375 | None:intergenic |
| GATGGCCTAAATGGGGAACA+TGG | 0.508158 | 3_1:-13408195 | None:intergenic |
| ACTATATATAGCAAAAGAAA+GGG | 0.509589 | 3_1:-13408013 | None:intergenic |
| TAGACCTTGTGGTGGGGCAG+AGG | 0.509813 | 3_1:-13411341 | None:intergenic |
| CCAGTTCCTAGCTACACATT+CGG | 0.509931 | 3_1:+13411295 | Msa0349550:CDS |
| TTCTAGGGTTCTTGAGAAGA+GGG | 0.513267 | 3_1:-13411519 | None:intergenic |
| ACACTTTCTTCCCATGAAAG+TGG | 0.514469 | 3_1:-13408222 | None:intergenic |
| AACTTGGAAGCAATTAGGGT+TGG | 0.515766 | 3_1:+13411562 | Msa0349550:CDS |
| CAACACCAACCCTAGAGTTA+GGG | 0.517242 | 3_1:-13412193 | None:intergenic |
| TGGTGGGGCAGAGGTGCCTG+TGG | 0.527039 | 3_1:-13411332 | None:intergenic |
| AAGCACCACGTGTTTGGCCA+TGG | 0.528056 | 3_1:+13412088 | Msa0349550:CDS |
| AATAGAGAGATGATCTTCTA+GGG | 0.533715 | 3_1:-13411534 | None:intergenic |
| TCTCGGACTGCCACATAGGC+CGG | 0.535722 | 3_1:-13411903 | None:intergenic |
| ACAATAACATTCATGTTCTC+CGG | 0.536184 | 3_1:+13412014 | Msa0349550:CDS |
| GTTTACTCGGCTAGTTGCTC+CGG | 0.542159 | 3_1:+13411884 | Msa0349550:CDS |
| CTTCTAGGGTTCTTGAGAAG+AGG | 0.543537 | 3_1:-13411520 | None:intergenic |
| TTAGTCCTTGGACTAGGGAG+AGG | 0.549316 | 3_1:-13408113 | None:intergenic |
| CTCACACCACAACTAGGGTT+AGG | 0.549658 | 3_1:-13411190 | None:intergenic |
| GATGTCCCTAACTCTAGGGT+TGG | 0.549992 | 3_1:+13412188 | Msa0349550:CDS |
| CGAGTTCACGTTATCGGGCG+CGG | 0.555456 | 3_1:-13412114 | None:intergenic |
| ATACTAGTAATGATGCTGCT+TGG | 0.557490 | 3_1:+13408412 | Msa0349550:CDS |
| GGGAACATGGGCTAAACACA+TGG | 0.560028 | 3_1:-13408182 | None:intergenic |
| CTATTCCTCTCCCTAGTCCA+AGG | 0.561125 | 3_1:+13408108 | Msa0349550:CDS |
| GAGAACATGAATGTTATTGT+GGG | 0.563656 | 3_1:-13412011 | None:intergenic |
| GGAGAACATGAATGTTATTG+TGG | 0.564231 | 3_1:-13412012 | None:intergenic |
| AAGCTCACAGTGACATCCCT+AGG | 0.564717 | 3_1:+13411951 | Msa0349550:CDS |
| GTACGAATATGCATCTCTGC+TGG | 0.566430 | 3_1:+13412646 | Msa0349550:three_prime_UTR |
| AGCCCAATAGACCTTGTGGT+GGG | 0.567593 | 3_1:-13411348 | None:intergenic |
| TGTCTTGGACATCACATTTG+GGG | 0.569858 | 3_1:-13408137 | None:intergenic |
| CGCGCCCGATAACGTGAACT+CGG | 0.569919 | 3_1:+13412115 | Msa0349550:CDS |
| TAATGGTGAGTGTGTGTCAC+GGG | 0.573160 | 3_1:+13412458 | Msa0349550:three_prime_UTR |
| TGATATTCCTCCAGCCACAT+TGG | 0.573713 | 3_1:+13411597 | Msa0349550:CDS |
| AAGTTAAGAGACTTGAAACT+TGG | 0.573810 | 3_1:-13411442 | None:intergenic |
| CAGGTACCTAACCCTAGTTG+TGG | 0.574866 | 3_1:+13411184 | Msa0349550:intron |
| GCATGTGTCAAACCCTCCTA+GGG | 0.576135 | 3_1:-13411967 | None:intergenic |
| TTCCGGCGGTGCTATGTATG+AGG | 0.576562 | 3_1:-13412067 | None:intergenic |
| GGGAGAGGAATAGGAACAAG+AGG | 0.576994 | 3_1:-13408098 | None:intergenic |
| ATGGTACCAGCTCCAGTAGT+CGG | 0.578134 | 3_1:-13411628 | None:intergenic |
| GGAGTGTTGAGCCATTGTCT+TGG | 0.579994 | 3_1:-13408152 | None:intergenic |
| ATAGCCAAAAGCAAAGTTTG+AGG | 0.580224 | 3_1:-13408387 | None:intergenic |
| TGGCAATGTCACGTTCATGC+CGG | 0.582971 | 3_1:-13412033 | None:intergenic |
| GCTTTGGCCCAACTCTTCGC+CGG | 0.583717 | 3_1:-13411932 | None:intergenic |
| GGTGTTACCTGAATCAAAGA+TGG | 0.585226 | 3_1:-13411647 | None:intergenic |
| GGCTGCCATGGCCAAACACG+TGG | 0.586913 | 3_1:-13412093 | None:intergenic |
| CGAATGTGTAGCTAGGAACT+GGG | 0.588782 | 3_1:-13411294 | None:intergenic |
| GCCCAATAGACCTTGTGGTG+GGG | 0.592501 | 3_1:-13411347 | None:intergenic |
| AGCAACTAGCCGAGTAAACA+CGG | 0.595392 | 3_1:-13411880 | None:intergenic |
| ATCCTCATACATAGCACCGC+CGG | 0.596187 | 3_1:+13412065 | Msa0349550:CDS |
| GACCTGTTGCTCAGCCCAAG+AGG | 0.602178 | 3_1:+13411485 | Msa0349550:CDS |
| TTTAATCCGACTACTGGAGC+TGG | 0.602258 | 3_1:+13411622 | Msa0349550:CDS |
| ACACAACCGAATGTGTAGCT+AGG | 0.605985 | 3_1:-13411301 | None:intergenic |
| GGCACCTCTGCCCCACCACA+AGG | 0.606822 | 3_1:+13411337 | Msa0349550:CDS |
| TGGCAAACAGTAAGAGAATG+TGG | 0.607273 | 3_1:-13411422 | None:intergenic |
| GCCAAAAGCAAAGTTTGAGG+TGG | 0.608306 | 3_1:-13408384 | None:intergenic |
| CTCATCTCGGACTGCCACAT+AGG | 0.608842 | 3_1:-13411907 | None:intergenic |
| TGCAATAGAGGAACTGCCAT+AGG | 0.614874 | 3_1:-13411233 | None:intergenic |
| ATGAGCTCACACCACAACTA+GGG | 0.616988 | 3_1:-13411195 | None:intergenic |
| AAGCCCAATAGACCTTGTGG+TGG | 0.617029 | 3_1:-13411349 | None:intergenic |
| CAAGCTAGGTAGCTAGCTAG+AGG | 0.617249 | 3_1:-13412489 | None:intergenic |
| CATGAACGTGACATTGCCAC+AGG | 0.618666 | 3_1:+13412037 | Msa0349550:CDS |
| GTAATGGTGAGTGTGTGTCA+CGG | 0.620572 | 3_1:+13412457 | Msa0349550:three_prime_UTR |
| CAACCATCACAAGCAGTGCA+AGG | 0.621327 | 3_1:-13408438 | None:intergenic |
| AAATGTGATGTCCAAGACAA+TGG | 0.621832 | 3_1:+13408141 | Msa0349550:CDS |
| AAGAACTCCATATTTGTGTG+TGG | 0.623403 | 3_1:+13412387 | Msa0349550:three_prime_UTR |
| CCCAAGCCCAATAGACCTTG+TGG | 0.625674 | 3_1:-13411352 | None:intergenic |
| ATGGCCTAAATGGGGAACAT+GGG | 0.626148 | 3_1:-13408194 | None:intergenic |
| CTCACAGTGACATCCCTAGG+AGG | 0.629537 | 3_1:+13411954 | Msa0349550:CDS |
| GTAGCTAGGAACTGGGTCAG+TGG | 0.633103 | 3_1:-13411287 | None:intergenic |
| GCTCAAAATCTTACACCATG+TGG | 0.641307 | 3_1:-13412363 | None:intergenic |
| GGAGAGGAATAGGAACAAGA+GGG | 0.641689 | 3_1:-13408097 | None:intergenic |
| CAAACACGTGGTGCTTCCGG+CGG | 0.645922 | 3_1:-13412081 | None:intergenic |
| TCACAGTGACATCCCTAGGA+GGG | 0.649521 | 3_1:+13411955 | Msa0349550:CDS |
| AAGGTTTGATTCTAACCACA+TGG | 0.650604 | 3_1:+13412348 | Msa0349550:three_prime_UTR |
| TCTAGGGTTCTTGAGAAGAG+GGG | 0.652701 | 3_1:-13411518 | None:intergenic |
| TGGCTTTGATGGCCTAAATG+GGG | 0.655766 | 3_1:-13408202 | None:intergenic |
| GTTTGAGACAAAAGTGACAA+CGG | 0.666616 | 3_1:-13411382 | None:intergenic |
| TTAAACGCCAATGTGGCTGG+AGG | 0.671187 | 3_1:-13411604 | None:intergenic |
| AGTCGGATTAAACGCCAATG+TGG | 0.699885 | 3_1:-13411611 | None:intergenic |
| TAGGGACATCAATGAGCACA+CGG | 0.705781 | 3_1:-13412175 | None:intergenic |
| TGTATGAGGATGTTGTCCTG+TGG | 0.744626 | 3_1:-13412053 | None:intergenic |
| GGACATCAATGAGCACACGG+TGG | 0.780138 | 3_1:-13412172 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAATTTGAAGAATTTAAT+TGG | - | chr3_1:13409505-13409524 | None:intergenic | 10.0% |
| !! | AATTAAATTCTTCAAATTAA+TGG | + | chr3_1:13409504-13409523 | Msa0349550:intron | 10.0% |
| !!! | AAGTATTTTAGTAATTTTTA+GGG | - | chr3_1:13409544-13409563 | None:intergenic | 10.0% |
| !!! | TTATTTTCTTTTTTATATAG+TGG | - | chr3_1:13410081-13410100 | None:intergenic | 10.0% |
| !!! | TAGTATATATATTTTTATGT+GGG | - | chr3_1:13411685-13411704 | None:intergenic | 10.0% |
| !!! | ATAGTATATATATTTTTATG+TGG | - | chr3_1:13411686-13411705 | None:intergenic | 10.0% |
| !!! | TTTTTGTTAAAAAATTACGA+AGG | + | chr3_1:13408662-13408681 | Msa0349550:intron | 15.0% |
| !!! | AACTCAGATTTTTTAAATTA+GGG | - | chr3_1:13408887-13408906 | None:intergenic | 15.0% |
| !! | AAAAATGTTTATGAAGAAAA+AGG | - | chr3_1:13408963-13408982 | None:intergenic | 15.0% |
| !!! | TTCTTCATAAACATTTTTTT+CGG | + | chr3_1:13408965-13408984 | Msa0349550:intron | 15.0% |
| !! | AATTATTAGAATAAATACCT+TGG | - | chr3_1:13409011-13409030 | None:intergenic | 15.0% |
| !!! | TAGTGATTCAATAATTTTAT+TGG | - | chr3_1:13409462-13409481 | None:intergenic | 15.0% |
| !!! | CAAGTATTTTAGTAATTTTT+AGG | - | chr3_1:13409545-13409564 | None:intergenic | 15.0% |
| !! | CTAAAAATTACTAAAATACT+TGG | + | chr3_1:13409543-13409562 | Msa0349550:intron | 15.0% |
| !! | AAGTTGTTTATAAATGTAAT+CGG | + | chr3_1:13409731-13409750 | Msa0349550:intron | 15.0% |
| !!! | GAATTTTATTTTTTTATCAG+TGG | - | chr3_1:13410053-13410072 | None:intergenic | 15.0% |
| !!! | TTGACGTAATTTATTTTTTT+TGG | - | chr3_1:13410110-13410129 | None:intergenic | 15.0% |
| !! | GATATATATTTGGATAAAAA+AGG | - | chr3_1:13410188-13410207 | None:intergenic | 15.0% |
| !! | AAATATATATCATATGAGAT+GGG | + | chr3_1:13410197-13410216 | Msa0349550:intron | 15.0% |
| !!! | TTTTCTTTTTTTACAATTTG+TGG | - | chr3_1:13410311-13410330 | None:intergenic | 15.0% |
| !! | ATTACTAATTTCAAAATGAA+AGG | + | chr3_1:13410630-13410649 | Msa0349550:intron | 15.0% |
| !! | TTACTAATTTCAAAATGAAA+GGG | + | chr3_1:13410631-13410650 | Msa0349550:intron | 15.0% |
| !!! | AAATGTTTTAAAATTGAGAT+AGG | - | chr3_1:13411088-13411107 | None:intergenic | 15.0% |
| !!! | ATTTTGTTTCATTTAAACAT+TGG | + | chr3_1:13411127-13411146 | Msa0349550:intron | 15.0% |
| !!! | TTTATTTTGTTTCATTTTTC+AGG | + | chr3_1:13411165-13411184 | Msa0349550:intron | 15.0% |
| !! | TTAATATTTAACATATGGTA+AGG | + | chr3_1:13412329-13412348 | Msa0349550:three_prime_UTR | 15.0% |
| !! | ACTATATATAGCAAAAGAAA+GGG | - | chr3_1:13408016-13408035 | None:intergenic | 20.0% |
| !! | TACTATATATAGCAAAAGAA+AGG | - | chr3_1:13408017-13408036 | None:intergenic | 20.0% |
| !!! | TTAAATGTAGTTGATTTTTC+AGG | - | chr3_1:13408483-13408502 | None:intergenic | 20.0% |
| !!! | CAACTCAGATTTTTTAAATT+AGG | - | chr3_1:13408888-13408907 | None:intergenic | 20.0% |
| !! | TTATTAAATCACAACAATTG+TGG | + | chr3_1:13409130-13409149 | Msa0349550:intron | 20.0% |
| !! | TAAGCAATCTTTATATTGTT+TGG | + | chr3_1:13409629-13409648 | Msa0349550:intron | 20.0% |
| !! | AAGCAATCTTTATATTGTTT+GGG | + | chr3_1:13409630-13409649 | Msa0349550:intron | 20.0% |
| !! | TTAAATTATCTTAGACAACT+AGG | + | chr3_1:13409791-13409810 | Msa0349550:intron | 20.0% |
| !! | ATATATGTGTATATGGTATA+AGG | - | chr3_1:13409979-13409998 | None:intergenic | 20.0% |
| !! | ATGATACATATATGTGTATA+TGG | - | chr3_1:13409986-13410005 | None:intergenic | 20.0% |
| !! | CATCTCATATGATATATATT+TGG | - | chr3_1:13410198-13410217 | None:intergenic | 20.0% |
| !! | CAAATATATATCATATGAGA+TGG | + | chr3_1:13410196-13410215 | Msa0349550:intron | 20.0% |
| !! | TATTATATTGTTTACACGTT+GGG | - | chr3_1:13410284-13410303 | None:intergenic | 20.0% |
| !! | TTATTATATTGTTTACACGT+TGG | - | chr3_1:13410285-13410304 | None:intergenic | 20.0% |
| !! | GTCTAAGTAAAGATAATTTA+TGG | - | chr3_1:13410548-13410567 | None:intergenic | 20.0% |
| !!! | TTTTGTCCCATTATTATTAT+AGG | + | chr3_1:13410694-13410713 | Msa0349550:intron | 20.0% |
| !!! | ATATTTTGGATTCATAGATT+GGG | - | chr3_1:13410743-13410762 | None:intergenic | 20.0% |
| !!! | AATATTTTGGATTCATAGAT+TGG | - | chr3_1:13410744-13410763 | None:intergenic | 20.0% |
| !! | TGTAATCATGGTTTAAAAAT+TGG | + | chr3_1:13410837-13410856 | Msa0349550:intron | 20.0% |
| !! | GAATAAACCAACTTATTAAT+CGG | - | chr3_1:13410894-13410913 | None:intergenic | 20.0% |
| !! | TAAAAAATTGACCAATACAT+TGG | + | chr3_1:13410987-13411006 | Msa0349550:intron | 20.0% |
| !! | AAAGAATCATGATATGATTA+TGG | - | chr3_1:13411833-13411852 | None:intergenic | 20.0% |
| !! | ATTAAACCCATGAATATAAA+TGG | - | chr3_1:13412314-13412333 | None:intergenic | 20.0% |
| !! | TGGGTTTAATATTTAACATA+TGG | + | chr3_1:13412324-13412343 | Msa0349550:three_prime_UTR | 20.0% |
| !!! | TATATTTGTAGCTTTTGTAA+TGG | + | chr3_1:13412441-13412460 | Msa0349550:three_prime_UTR | 20.0% |
| !!! | TAACTTTGTCACTTTAAAAA+TGG | + | chr3_1:13412679-13412698 | Msa0349550:three_prime_UTR | 20.0% |
| !! | TTGTTTTCGTGTTCTTATAT+TGG | + | chr3_1:13408582-13408601 | Msa0349550:intron | 25.0% |
| !!! | AAAAGAATGGTTCTAAATTG+TGG | + | chr3_1:13408738-13408757 | Msa0349550:intron | 25.0% |
| ! | AAAAAATAGATGTAAGAGCT+TGG | - | chr3_1:13408921-13408940 | None:intergenic | 25.0% |
| !!! | AATGAGTTATTTTTACTCCA+AGG | + | chr3_1:13408991-13409010 | Msa0349550:intron | 25.0% |
| ! | TTATATGCAATATCTATTCC+TGG | + | chr3_1:13409037-13409056 | Msa0349550:intron | 25.0% |
| !!! | TTTTTCAAAACATGAAAACC+AGG | - | chr3_1:13409058-13409077 | None:intergenic | 25.0% |
| ! | TTGTTTGAACTGATATACAA+TGG | + | chr3_1:13409414-13409433 | Msa0349550:intron | 25.0% |
| !!! | AATGGTGAAAGATTTGTTTT+GGG | + | chr3_1:13409432-13409451 | Msa0349550:intron | 25.0% |
| !!! | TCTATGACTAACCTATTTTT+TGG | - | chr3_1:13409769-13409788 | None:intergenic | 25.0% |
| ! | ATTATATTGTTTACACGTTG+GGG | - | chr3_1:13410283-13410302 | None:intergenic | 25.0% |
| ! | AAGTTAATAAAGCAACACAT+GGG | + | chr3_1:13410335-13410354 | Msa0349550:intron | 25.0% |
| ! | TTTAGCAAAGAAACAAAAAG+TGG | + | chr3_1:13410409-13410428 | Msa0349550:intron | 25.0% |
| ! | TTAGCAAAGAAACAAAAAGT+GGG | + | chr3_1:13410410-13410429 | Msa0349550:intron | 25.0% |
| ! | AAGATAATTTATGGTGTGTT+TGG | - | chr3_1:13410539-13410558 | None:intergenic | 25.0% |
| !! | TTTTTCCAATGATGTAATCA+TGG | + | chr3_1:13410825-13410844 | Msa0349550:intron | 25.0% |
| ! | TTAAACCATGATTACATCAT+TGG | - | chr3_1:13410833-13410852 | None:intergenic | 25.0% |
| ! | AAAAAGACCGATTAATAAGT+TGG | + | chr3_1:13410884-13410903 | Msa0349550:intron | 25.0% |
| ! | AAATAAACCAACCAATGTAT+TGG | - | chr3_1:13411001-13411020 | None:intergenic | 25.0% |
| !!! | ATACATTGGTTGGTTTATTT+TGG | + | chr3_1:13411001-13411020 | Msa0349550:intron | 25.0% |
| ! | ATCTCTCTATTATGTTAACT+TGG | + | chr3_1:13411546-13411565 | Msa0349550:CDS | 25.0% |
| !!! | ATATATTTTTATGTGGGAGT+AGG | - | chr3_1:13411679-13411698 | None:intergenic | 25.0% |
| !!! | ATTTGTTGTTAATCATTACC+AGG | + | chr3_1:13411855-13411874 | Msa0349550:intron | 25.0% |
| ! | GAGCTATGTACTTAATAAAA+TGG | + | chr3_1:13412221-13412240 | Msa0349550:exon | 25.0% |
| ! | ATTTAATCCACACACAAATA+TGG | - | chr3_1:13412397-13412416 | None:intergenic | 25.0% |
| ! | TAGTTGTTATGGTGAGATTT+TGG | - | chr3_1:13408062-13408081 | None:intergenic | 30.0% |
| TGTGAGTTTCATAGTTGTTA+TGG | - | chr3_1:13408073-13408092 | None:intergenic | 30.0% | |
| ! | ACTTCAATTCCTTGATAGTT+TGG | + | chr3_1:13408275-13408294 | Msa0349550:CDS | 30.0% |
| TACATTGTTAGGGCTAAAAT+TGG | + | chr3_1:13408357-13408376 | Msa0349550:CDS | 30.0% | |
| !!! | TTTTTTACCTGTTTGCATTC+AGG | - | chr3_1:13408525-13408544 | None:intergenic | 30.0% |
| ! | TTTTCGTGTTCTTATATTGG+CGG | + | chr3_1:13408585-13408604 | Msa0349550:intron | 30.0% |
| CACAAATCTAAACAAGTACT+AGG | + | chr3_1:13408712-13408731 | Msa0349550:intron | 30.0% | |
| AAGTACTAGGAAGAAAAGAA+TGG | + | chr3_1:13408725-13408744 | Msa0349550:intron | 30.0% | |
| GACAAAATAACGAGTATCTT+TGG | - | chr3_1:13409284-13409303 | None:intergenic | 30.0% | |
| TTTGTACATTGTGACATTTG+AGG | - | chr3_1:13409349-13409368 | None:intergenic | 30.0% | |
| !! | CAATGGTGAAAGATTTGTTT+TGG | + | chr3_1:13409431-13409450 | Msa0349550:intron | 30.0% |
| !!! | ATGGTGAAAGATTTGTTTTG+GGG | + | chr3_1:13409433-13409452 | Msa0349550:intron | 30.0% |
| GAGATGTTGTACCAAAAAAT+AGG | + | chr3_1:13409755-13409774 | Msa0349550:intron | 30.0% | |
| GAAAGTAAGAAGAGAGAAAT+AGG | + | chr3_1:13409823-13409842 | Msa0349550:intron | 30.0% | |
| CAAGTTAATAAAGCAACACA+TGG | + | chr3_1:13410334-13410353 | Msa0349550:intron | 30.0% | |
| AATTAGTAATTACCCTTCCA+CGG | - | chr3_1:13410620-13410639 | None:intergenic | 30.0% | |
| TGTCCCATTATTATTATAGG+TGG | + | chr3_1:13410697-13410716 | Msa0349550:intron | 30.0% | |
| GTCCCATTATTATTATAGGT+GGG | + | chr3_1:13410698-13410717 | Msa0349550:intron | 30.0% | |
| TCCCATTATTATTATAGGTG+GGG | + | chr3_1:13410699-13410718 | Msa0349550:intron | 30.0% | |
| ACCCCACCTATAATAATAAT+GGG | - | chr3_1:13410703-13410722 | None:intergenic | 30.0% | |
| AACCCCACCTATAATAATAA+TGG | - | chr3_1:13410704-13410723 | None:intergenic | 30.0% | |
| ! | GCACATAGCTTTCAATATTT+TGG | - | chr3_1:13410757-13410776 | None:intergenic | 30.0% |
| GTTTAAAAATTGGATCGAAG+TGG | + | chr3_1:13410847-13410866 | Msa0349550:intron | 30.0% | |
| !! | ATAAGTTGGTTTATTCTCGA+TGG | + | chr3_1:13410898-13410917 | Msa0349550:intron | 30.0% |
| ! | AATAGGTTGAATTGCAGATA+AGG | + | chr3_1:13410957-13410976 | Msa0349550:intron | 30.0% |
| AAATTGACCAATACATTGGT+TGG | + | chr3_1:13410991-13411010 | Msa0349550:intron | 30.0% | |
| GAGACTTATCATGATTCAAT+TGG | - | chr3_1:13411052-13411071 | None:intergenic | 30.0% | |
| AAGTTAAGAGACTTGAAACT+TGG | - | chr3_1:13411445-13411464 | None:intergenic | 30.0% | |
| AATAGAGAGATGATCTTCTA+GGG | - | chr3_1:13411537-13411556 | None:intergenic | 30.0% | |
| TAATAGAGAGATGATCTTCT+AGG | - | chr3_1:13411538-13411557 | None:intergenic | 30.0% | |
| ! | ATGTTAACTTGGAAGCAATT+AGG | + | chr3_1:13411557-13411576 | Msa0349550:CDS | 30.0% |
| ! | TGTTAACTTGGAAGCAATTA+GGG | + | chr3_1:13411558-13411577 | Msa0349550:CDS | 30.0% |
| TTATTGTGGGTACAACTATT+GGG | - | chr3_1:13412001-13412020 | None:intergenic | 30.0% | |
| GAGAACATGAATGTTATTGT+GGG | - | chr3_1:13412014-13412033 | None:intergenic | 30.0% | |
| ACAATAACATTCATGTTCTC+CGG | + | chr3_1:13412014-13412033 | Msa0349550:CDS | 30.0% | |
| ! | CACATAATCTTTTGTCAATG+TGG | + | chr3_1:13412250-13412269 | Msa0349550:three_prime_UTR | 30.0% |
| TGGCATTAGAAAAGTTGTTT+GGG | + | chr3_1:13412270-13412289 | Msa0349550:three_prime_UTR | 30.0% | |
| TAGAAAAGTTGTTTGGGTAA+TGG | + | chr3_1:13412276-13412295 | Msa0349550:three_prime_UTR | 30.0% | |
| ! | TTGTTTGGGTAATGGTAATA+TGG | + | chr3_1:13412284-13412303 | Msa0349550:three_prime_UTR | 30.0% |
| TGGTACTCCATTTATATTCA+TGG | + | chr3_1:13412304-13412323 | Msa0349550:three_prime_UTR | 30.0% | |
| GGTACTCCATTTATATTCAT+GGG | + | chr3_1:13412305-13412324 | Msa0349550:three_prime_UTR | 30.0% | |
| AAAAAGACACAAATCAAGCT+AGG | - | chr3_1:13412506-13412525 | None:intergenic | 30.0% | |
| TAATTAATCGTGCAAGTTCA+CGG | + | chr3_1:13412561-13412580 | Msa0349550:three_prime_UTR | 30.0% | |
| TTGGTTCATTCACTTGACTT+AGG | - | chr3_1:13408043-13408062 | None:intergenic | 35.0% | |
| TTGTCTTGGACATCACATTT+GGG | - | chr3_1:13408141-13408160 | None:intergenic | 35.0% | |
| ATTGTCTTGGACATCACATT+TGG | - | chr3_1:13408142-13408161 | None:intergenic | 35.0% | |
| AAATGTGATGTCCAAGACAA+TGG | + | chr3_1:13408141-13408160 | Msa0349550:CDS | 35.0% | |
| TTGAAGTCTAGTTGTGTCTT+TGG | - | chr3_1:13408262-13408281 | None:intergenic | 35.0% | |
| ! | TTCTAGCTACCAAACTATCA+AGG | - | chr3_1:13408287-13408306 | None:intergenic | 35.0% |
| TCAATTGTACCTATTGCTTC+TGG | + | chr3_1:13408309-13408328 | Msa0349550:CDS | 35.0% | |
| ATTTGTCTACCAGAAGCAAT+AGG | - | chr3_1:13408321-13408340 | None:intergenic | 35.0% | |
| AGAGTCCAACTTACATTGTT+AGG | + | chr3_1:13408346-13408365 | Msa0349550:CDS | 35.0% | |
| GAGTCCAACTTACATTGTTA+GGG | + | chr3_1:13408347-13408366 | Msa0349550:CDS | 35.0% | |
| TTAGCCCTAACAATGTAAGT+TGG | - | chr3_1:13408354-13408373 | None:intergenic | 35.0% | |
| ATAGCCAAAAGCAAAGTTTG+AGG | - | chr3_1:13408390-13408409 | None:intergenic | 35.0% | |
| !! | TCAAACTTTGCTTTTGGCTA+TGG | + | chr3_1:13408389-13408408 | Msa0349550:CDS | 35.0% |
| ATACTAGTAATGATGCTGCT+TGG | + | chr3_1:13408412-13408431 | Msa0349550:CDS | 35.0% | |
| !! | ATGGTTCTAAATTGTGGTTG+TGG | + | chr3_1:13408744-13408763 | Msa0349550:intron | 35.0% |
| ACACGATGCAAATGCAATTA+TGG | + | chr3_1:13408804-13408823 | Msa0349550:intron | 35.0% | |
| AAGAGAAAGAAGAGAGAGAA+AGG | + | chr3_1:13409912-13409931 | Msa0349550:intron | 35.0% | |
| CAAAGAAACAAAAAGTGGGT+GGG | + | chr3_1:13410414-13410433 | Msa0349550:intron | 35.0% | |
| AAAGAAACAAAAAGTGGGTG+GGG | + | chr3_1:13410415-13410434 | Msa0349550:intron | 35.0% | |
| !! | GTTTGGTTTGAAGAGAAAGA+GGG | - | chr3_1:13410464-13410483 | None:intergenic | 35.0% |
| !! | TGTTTGGTTTGAAGAGAAAG+AGG | - | chr3_1:13410465-13410484 | None:intergenic | 35.0% |
| GATTGCAAACTCATCATGTT+TGG | - | chr3_1:13410481-13410500 | None:intergenic | 35.0% | |
| TGTTTGGTAGAAGAGAGATA+GGG | - | chr3_1:13410523-13410542 | None:intergenic | 35.0% | |
| TCAAAATGAAAGGGACTACA+AGG | + | chr3_1:13410640-13410659 | Msa0349550:intron | 35.0% | |
| GGAGAGATTATTGATCACAT+TGG | + | chr3_1:13410661-13410680 | Msa0349550:intron | 35.0% | |
| ATATTGAAAGCTATGTGCTC+AGG | + | chr3_1:13410759-13410778 | Msa0349550:intron | 35.0% | |
| AAAAATTGGATCGAAGTGGT+CGG | + | chr3_1:13410851-13410870 | Msa0349550:intron | 35.0% | |
| TAGATTGAACTGAGTCGAAT+AGG | + | chr3_1:13410940-13410959 | Msa0349550:intron | 35.0% | |
| !! | AATTGGTTCAATCGATTCGA+CGG | - | chr3_1:13411035-13411054 | None:intergenic | 35.0% |
| TGCAATTTCAACCTAACCTA+TGG | + | chr3_1:13411217-13411236 | Msa0349550:CDS | 35.0% | |
| ! | TTTGAGACAAAAGTGACAAC+GGG | - | chr3_1:13411384-13411403 | None:intergenic | 35.0% |
| ! | GTTTGAGACAAAAGTGACAA+CGG | - | chr3_1:13411385-13411404 | None:intergenic | 35.0% |
| TTCAAGTCTCTTAACTTCTC+TGG | + | chr3_1:13411448-13411467 | Msa0349550:CDS | 35.0% | |
| TCAAGTCTCTTAACTTCTCT+GGG | + | chr3_1:13411449-13411468 | Msa0349550:CDS | 35.0% | |
| GGGGTATATTTAATCCTCTT+GGG | - | chr3_1:13411502-13411521 | None:intergenic | 35.0% | |
| ! | AGGGGTATATTTAATCCTCT+TGG | - | chr3_1:13411503-13411522 | None:intergenic | 35.0% |
| ! | GAGGAATATCAACGACTTTT+CGG | - | chr3_1:13411588-13411607 | None:intergenic | 35.0% |
| TTATGTGGGAGTAGGTAAAA+GGG | - | chr3_1:13411671-13411690 | None:intergenic | 35.0% | |
| TTTATGTGGGAGTAGGTAAA+AGG | - | chr3_1:13411672-13411691 | None:intergenic | 35.0% | |
| GTTATTGTGGGTACAACTAT+TGG | - | chr3_1:13412002-13412021 | None:intergenic | 35.0% | |
| GGAGAACATGAATGTTATTG+TGG | - | chr3_1:13412015-13412034 | None:intergenic | 35.0% | |
| GTGGCATTAGAAAAGTTGTT+TGG | + | chr3_1:13412269-13412288 | Msa0349550:three_prime_UTR | 35.0% | |
| AAGGTTTGATTCTAACCACA+TGG | + | chr3_1:13412348-13412367 | Msa0349550:three_prime_UTR | 35.0% | |
| AAGAACTCCATATTTGTGTG+TGG | + | chr3_1:13412387-13412406 | Msa0349550:three_prime_UTR | 35.0% | |
| AATTAATCGTGCAAGTTCAC+GGG | + | chr3_1:13412562-13412581 | Msa0349550:three_prime_UTR | 35.0% | |
| TGTCTTGGACATCACATTTG+GGG | - | chr3_1:13408140-13408159 | None:intergenic | 40.0% | |
| ! | GGCTAAACACATGGATTACT+TGG | - | chr3_1:13408176-13408195 | None:intergenic | 40.0% |
| ACACTTTCTTCCCATGAAAG+TGG | - | chr3_1:13408225-13408244 | None:intergenic | 40.0% | |
| !! | TTGTGTCTTTGGCTTGCATT+TGG | - | chr3_1:13408251-13408270 | None:intergenic | 40.0% |
| ! | TCCACCTCAAACTTTGCTTT+TGG | + | chr3_1:13408383-13408402 | Msa0349550:CDS | 40.0% |
| TTACGCTGCAGACTTTGATA+TGG | + | chr3_1:13408779-13408798 | Msa0349550:intron | 40.0% | |
| TCGCAAAGTTAACTAGCTAG+TGG | + | chr3_1:13409099-13409118 | Msa0349550:intron | 40.0% | |
| ! | AAATAGGTGAGAGAGAGTGT+GGG | + | chr3_1:13409839-13409858 | Msa0349550:intron | 40.0% |
| AAGCAACACATGGGTATTTC+TGG | + | chr3_1:13410344-13410363 | Msa0349550:intron | 40.0% | |
| GCAAAGAAACAAAAAGTGGG+TGG | + | chr3_1:13410413-13410432 | Msa0349550:intron | 40.0% | |
| GAAGAGAGACCCAAAATGTA+TGG | - | chr3_1:13410442-13410461 | None:intergenic | 40.0% | |
| GTGTTTGGTAGAAGAGAGAT+AGG | - | chr3_1:13410524-13410543 | None:intergenic | 40.0% | |
| AGTTCACATGACATACAGCT+TGG | + | chr3_1:13410571-13410590 | Msa0349550:intron | 40.0% | |
| ! | TCTTTTACCTTTACTTGCCG+TGG | + | chr3_1:13410600-13410619 | Msa0349550:intron | 40.0% |
| ATCGAAGTGGTCGGATTAAT+CGG | + | chr3_1:13410860-13410879 | Msa0349550:intron | 40.0% | |
| TTCCTCTATTGCAGCTAACT+TGG | + | chr3_1:13411243-13411262 | Msa0349550:CDS | 40.0% | |
| TACCAAGTTAGCTGCAATAG+AGG | - | chr3_1:13411248-13411267 | None:intergenic | 40.0% | |
| GGTTGTGTTTCAAAAACCAC+AGG | + | chr3_1:13411316-13411335 | Msa0349550:CDS | 40.0% | |
| !! | TGTGGACTGATAGAGGTTTT+GGG | - | chr3_1:13411407-13411426 | None:intergenic | 40.0% |
| !! | ATGTGGACTGATAGAGGTTT+TGG | - | chr3_1:13411408-13411427 | None:intergenic | 40.0% |
| ! | AAGAGAATGTGGACTGATAG+AGG | - | chr3_1:13411414-13411433 | None:intergenic | 40.0% |
| TGGCAAACAGTAAGAGAATG+TGG | - | chr3_1:13411425-13411444 | None:intergenic | 40.0% | |
| !! | TTCTAGGGTTCTTGAGAAGA+GGG | - | chr3_1:13411522-13411541 | None:intergenic | 40.0% |
| AACTTGGAAGCAATTAGGGT+TGG | + | chr3_1:13411562-13411581 | Msa0349550:CDS | 40.0% | |
| ! | GGTGTTACCTGAATCAAAGA+TGG | - | chr3_1:13411650-13411669 | None:intergenic | 40.0% |
| TCATTGATGTCCCTAACTCT+AGG | + | chr3_1:13412183-13412202 | Msa0349550:CDS | 40.0% | |
| CATTGATGTCCCTAACTCTA+GGG | + | chr3_1:13412184-13412203 | Msa0349550:CDS | 40.0% | |
| GCTCAAAATCTTACACCATG+TGG | - | chr3_1:13412366-13412385 | None:intergenic | 40.0% | |
| GAAAGGGCAAAGACCCAAAT+TGG | - | chr3_1:13408000-13408019 | None:intergenic | 45.0% | |
| GGAGAGGAATAGGAACAAGA+GGG | - | chr3_1:13408100-13408119 | None:intergenic | 45.0% | |
| ! | CACATTTGGGGTTTAGTCCT+TGG | - | chr3_1:13408128-13408147 | None:intergenic | 45.0% |
| TTAGCCCATGTTCCCCATTT+AGG | + | chr3_1:13408190-13408209 | Msa0349550:CDS | 45.0% | |
| ATGGCCTAAATGGGGAACAT+GGG | - | chr3_1:13408197-13408216 | None:intergenic | 45.0% | |
| !! | TGGCTTTGATGGCCTAAATG+GGG | - | chr3_1:13408205-13408224 | None:intergenic | 45.0% |
| !! | GTGGCTTTGATGGCCTAAAT+GGG | - | chr3_1:13408206-13408225 | None:intergenic | 45.0% |
| !! | AGTGGCTTTGATGGCCTAAA+TGG | - | chr3_1:13408207-13408226 | None:intergenic | 45.0% |
| ! | GCCATCAAAGCCACTTTCAT+GGG | + | chr3_1:13408212-13408231 | Msa0349550:CDS | 45.0% |
| !! | TCCCATGAAAGTGGCTTTGA+TGG | - | chr3_1:13408216-13408235 | None:intergenic | 45.0% |
| !! | TGTCTTTGGCTTGCATTTGG+AGG | - | chr3_1:13408248-13408267 | None:intergenic | 45.0% |
| GCCAAAAGCAAAGTTTGAGG+TGG | - | chr3_1:13408387-13408406 | None:intergenic | 45.0% | |
| ATTCCTTGCACTGCTTGTGA+TGG | + | chr3_1:13408435-13408454 | Msa0349550:CDS | 45.0% | |
| GAAATAGGTGAGAGAGAGTG+TGG | + | chr3_1:13409838-13409857 | Msa0349550:intron | 45.0% | |
| CACAGTTCATTACGCAATGC+TGG | + | chr3_1:13410245-13410264 | Msa0349550:intron | 45.0% | |
| TCCACTTCTCTCCTCTTTCT+CGG | + | chr3_1:13410383-13410402 | Msa0349550:intron | 45.0% | |
| !! | TTGCTAAAGTGCCGAGAAAG+AGG | - | chr3_1:13410397-13410416 | None:intergenic | 45.0% |
| TTACCTTTACTTGCCGTGGA+AGG | + | chr3_1:13410604-13410623 | Msa0349550:intron | 45.0% | |
| TACCTTTACTTGCCGTGGAA+GGG | + | chr3_1:13410605-13410624 | Msa0349550:intron | 45.0% | |
| AAAGCTATGTGCTCAGGCAA+AGG | + | chr3_1:13410765-13410784 | Msa0349550:intron | 45.0% | |
| ATGAGCTCACACCACAACTA+GGG | - | chr3_1:13411198-13411217 | None:intergenic | 45.0% | |
| TAGAGGAACTGCCATAGGTT+AGG | - | chr3_1:13411231-13411250 | None:intergenic | 45.0% | |
| TGCAATAGAGGAACTGCCAT+AGG | - | chr3_1:13411236-13411255 | None:intergenic | 45.0% | |
| CGAATGTGTAGCTAGGAACT+GGG | - | chr3_1:13411297-13411316 | None:intergenic | 45.0% | |
| CCAGTTCCTAGCTACACATT+CGG | + | chr3_1:13411295-13411314 | Msa0349550:CDS | 45.0% | |
| ACACAACCGAATGTGTAGCT+AGG | - | chr3_1:13411304-13411323 | None:intergenic | 45.0% | |
| !! | TTCTCTGGGTCTTTGAGACT+TGG | + | chr3_1:13411463-13411482 | Msa0349550:CDS | 45.0% |
| ! | TCTAGGGTTCTTGAGAAGAG+GGG | - | chr3_1:13411521-13411540 | None:intergenic | 45.0% |
| !! | CTTCTAGGGTTCTTGAGAAG+AGG | - | chr3_1:13411523-13411542 | None:intergenic | 45.0% |
| TGATATTCCTCCAGCCACAT+TGG | + | chr3_1:13411597-13411616 | Msa0349550:CDS | 45.0% | |
| AGTCGGATTAAACGCCAATG+TGG | - | chr3_1:13411614-13411633 | None:intergenic | 45.0% | |
| TTGGCGTTTAATCCGACTAC+TGG | + | chr3_1:13411616-13411635 | Msa0349550:CDS | 45.0% | |
| TTTAATCCGACTACTGGAGC+TGG | + | chr3_1:13411622-13411641 | Msa0349550:CDS | 45.0% | |
| GCTGGTACCATCTTTGATTC+AGG | + | chr3_1:13411640-13411659 | Msa0349550:CDS | 45.0% | |
| ! | TACCAGGTACCGTGTTTACT+CGG | + | chr3_1:13411871-13411890 | Msa0349550:intron | 45.0% |
| AGCAACTAGCCGAGTAAACA+CGG | - | chr3_1:13411883-13411902 | None:intergenic | 45.0% | |
| TGTATGAGGATGTTGTCCTG+TGG | - | chr3_1:13412056-13412075 | None:intergenic | 45.0% | |
| AACACCGAGTTCACGTTATC+GGG | - | chr3_1:13412122-13412141 | None:intergenic | 45.0% | |
| CAACACCGAGTTCACGTTAT+CGG | - | chr3_1:13412123-13412142 | None:intergenic | 45.0% | |
| !!! | GTGGTTTTGTTGCTGCATGT+TGG | - | chr3_1:13412156-13412175 | None:intergenic | 45.0% |
| TAGGGACATCAATGAGCACA+CGG | - | chr3_1:13412178-13412197 | None:intergenic | 45.0% | |
| CAACACCAACCCTAGAGTTA+GGG | - | chr3_1:13412196-13412215 | None:intergenic | 45.0% | |
| GTAATGGTGAGTGTGTGTCA+CGG | + | chr3_1:13412457-13412476 | Msa0349550:three_prime_UTR | 45.0% | |
| TAATGGTGAGTGTGTGTCAC+GGG | + | chr3_1:13412458-13412477 | Msa0349550:three_prime_UTR | 45.0% | |
| GTACGAATATGCATCTCTGC+TGG | + | chr3_1:13412646-13412665 | Msa0349550:three_prime_UTR | 45.0% | |
| !!! | ATTCTATTTTTATTAAATTA+AGG | + | chr3_1:13410010-13410029 | Msa0349550:intron | 5.0% |
| GGGAGAGGAATAGGAACAAG+AGG | - | chr3_1:13408101-13408120 | None:intergenic | 50.0% | |
| ! | CTTGGACTAGGGAGAGGAAT+AGG | - | chr3_1:13408110-13408129 | None:intergenic | 50.0% |
| CTATTCCTCTCCCTAGTCCA+AGG | + | chr3_1:13408108-13408127 | Msa0349550:CDS | 50.0% | |
| ! | TTAGTCCTTGGACTAGGGAG+AGG | - | chr3_1:13408116-13408135 | None:intergenic | 50.0% |
| GGGGTTTAGTCCTTGGACTA+GGG | - | chr3_1:13408121-13408140 | None:intergenic | 50.0% | |
| TGGGGTTTAGTCCTTGGACT+AGG | - | chr3_1:13408122-13408141 | None:intergenic | 50.0% | |
| !! | GGAGTGTTGAGCCATTGTCT+TGG | - | chr3_1:13408155-13408174 | None:intergenic | 50.0% |
| ! | GGGAACATGGGCTAAACACA+TGG | - | chr3_1:13408185-13408204 | None:intergenic | 50.0% |
| GATGGCCTAAATGGGGAACA+TGG | - | chr3_1:13408198-13408217 | None:intergenic | 50.0% | |
| ! | GGCCATCAAAGCCACTTTCA+TGG | + | chr3_1:13408211-13408230 | Msa0349550:CDS | 50.0% |
| CAACCATCACAAGCAGTGCA+AGG | - | chr3_1:13408441-13408460 | None:intergenic | 50.0% | |
| TGCTGCTCCTGAATGCAAAC+AGG | + | chr3_1:13408515-13408534 | Msa0349550:CDS | 50.0% | |
| ! | TGGGTGGGGTCCATACATTT+TGG | + | chr3_1:13410429-13410448 | Msa0349550:intron | 50.0% |
| ! | GGGTGGGGTCCATACATTTT+GGG | + | chr3_1:13410430-13410449 | Msa0349550:intron | 50.0% |
| TACCCTTCCACGGCAAGTAA+AGG | - | chr3_1:13410610-13410629 | None:intergenic | 50.0% | |
| AGGCAAAGGTTCACGAGACT+TGG | + | chr3_1:13410779-13410798 | Msa0349550:intron | 50.0% | |
| CAGGTACCTAACCCTAGTTG+TGG | + | chr3_1:13411184-13411203 | Msa0349550:intron | 50.0% | |
| CTCACACCACAACTAGGGTT+AGG | - | chr3_1:13411193-13411212 | None:intergenic | 50.0% | |
| CATGAGCTCACACCACAACT+AGG | - | chr3_1:13411199-13411218 | None:intergenic | 50.0% | |
| CCGAATGTGTAGCTAGGAAC+TGG | - | chr3_1:13411298-13411317 | None:intergenic | 50.0% | |
| AGCCCAATAGACCTTGTGGT+GGG | - | chr3_1:13411351-13411370 | None:intergenic | 50.0% | |
| AAGCCCAATAGACCTTGTGG+TGG | - | chr3_1:13411352-13411371 | None:intergenic | 50.0% | |
| ACCACAAGGTCTATTGGGCT+TGG | + | chr3_1:13411351-13411370 | Msa0349550:CDS | 50.0% | |
| CCACAAGGTCTATTGGGCTT+GGG | + | chr3_1:13411352-13411371 | Msa0349550:CDS | 50.0% | |
| ACAAAAGTGACAACGGGCCT+CGG | - | chr3_1:13411378-13411397 | None:intergenic | 50.0% | |
| TTAAACGCCAATGTGGCTGG+AGG | - | chr3_1:13411607-13411626 | None:intergenic | 50.0% | |
| GGATTAAACGCCAATGTGGC+TGG | - | chr3_1:13411610-13411629 | None:intergenic | 50.0% | |
| ATGGTACCAGCTCCAGTAGT+CGG | - | chr3_1:13411631-13411650 | None:intergenic | 50.0% | |
| ! | GTTTACTCGGCTAGTTGCTC+CGG | + | chr3_1:13411884-13411903 | Msa0349550:CDS | 50.0% |
| ATGAGTTCCGGCGAAGAGTT+GGG | + | chr3_1:13411925-13411944 | Msa0349550:CDS | 50.0% | |
| AGGGATGTCACTGTGAGCTT+TGG | - | chr3_1:13411951-13411970 | None:intergenic | 50.0% | |
| AAGCTCACAGTGACATCCCT+AGG | + | chr3_1:13411951-13411970 | Msa0349550:CDS | 50.0% | |
| TCACAGTGACATCCCTAGGA+GGG | + | chr3_1:13411955-13411974 | Msa0349550:CDS | 50.0% | |
| GCATGTGTCAAACCCTCCTA+GGG | - | chr3_1:13411970-13411989 | None:intergenic | 50.0% | |
| AGCATGTGTCAAACCCTCCT+AGG | - | chr3_1:13411971-13411990 | None:intergenic | 50.0% | |
| TGGCAATGTCACGTTCATGC+CGG | - | chr3_1:13412036-13412055 | None:intergenic | 50.0% | |
| CATGAACGTGACATTGCCAC+AGG | + | chr3_1:13412037-13412056 | Msa0349550:CDS | 50.0% | |
| ATCCTCATACATAGCACCGC+CGG | + | chr3_1:13412065-13412084 | Msa0349550:CDS | 50.0% | |
| !! | GATGTCCCTAACTCTAGGGT+TGG | + | chr3_1:13412188-13412207 | Msa0349550:CDS | 50.0% |
| GCAACACCAACCCTAGAGTT+AGG | - | chr3_1:13412197-13412216 | None:intergenic | 50.0% | |
| CAAGCTAGGTAGCTAGCTAG+AGG | - | chr3_1:13412492-13412511 | None:intergenic | 50.0% | |
| ! | TCGTGCAAGTTCACGGGTTA+TGG | + | chr3_1:13412568-13412587 | Msa0349550:three_prime_UTR | 50.0% |
| GCCGAGAAAGAGGAGAGAAG+TGG | - | chr3_1:13410387-13410406 | None:intergenic | 55.0% | |
| AGGAACTGGGTCAGTGGCTA+AGG | - | chr3_1:13411284-13411303 | None:intergenic | 55.0% | |
| GTAGCTAGGAACTGGGTCAG+TGG | - | chr3_1:13411290-13411309 | None:intergenic | 55.0% | |
| TGCCCCACCACAAGGTCTAT+TGG | + | chr3_1:13411345-13411364 | Msa0349550:CDS | 55.0% | |
| GCCCCACCACAAGGTCTATT+GGG | + | chr3_1:13411346-13411365 | Msa0349550:CDS | 55.0% | |
| GCCCAATAGACCTTGTGGTG+GGG | - | chr3_1:13411350-13411369 | None:intergenic | 55.0% | |
| CCCAAGCCCAATAGACCTTG+TGG | - | chr3_1:13411355-13411374 | None:intergenic | 55.0% | |
| ATCCTCTTGGGCTGAGCAAC+AGG | - | chr3_1:13411490-13411509 | None:intergenic | 55.0% | |
| AGCCGAGTAAACACGGTACC+TGG | - | chr3_1:13411876-13411895 | None:intergenic | 55.0% | |
| CTCATCTCGGACTGCCACAT+AGG | - | chr3_1:13411910-13411929 | None:intergenic | 55.0% | |
| TGGCAGTCCGAGATGAGTTC+CGG | + | chr3_1:13411913-13411932 | Msa0349550:CDS | 55.0% | |
| CTCTTCGCCGGAACTCATCT+CGG | - | chr3_1:13411923-13411942 | None:intergenic | 55.0% | |
| GATGAGTTCCGGCGAAGAGT+TGG | + | chr3_1:13411924-13411943 | Msa0349550:CDS | 55.0% | |
| CTCACAGTGACATCCCTAGG+AGG | + | chr3_1:13411954-13411973 | Msa0349550:CDS | 55.0% | |
| !! | TTCCGGCGGTGCTATGTATG+AGG | - | chr3_1:13412070-13412089 | None:intergenic | 55.0% |
| AAGCACCACGTGTTTGGCCA+TGG | + | chr3_1:13412088-13412107 | Msa0349550:CDS | 55.0% | |
| GGACATCAATGAGCACACGG+TGG | - | chr3_1:13412175-13412194 | None:intergenic | 55.0% | |
| ! | TAGACCTTGTGGTGGGGCAG+AGG | - | chr3_1:13411344-13411363 | None:intergenic | 60.0% |
| GACCTGTTGCTCAGCCCAAG+AGG | + | chr3_1:13411485-13411504 | Msa0349550:CDS | 60.0% | |
| GCTAGTTGCTCCGGCCTATG+TGG | + | chr3_1:13411893-13411912 | Msa0349550:CDS | 60.0% | |
| TCTCGGACTGCCACATAGGC+CGG | - | chr3_1:13411906-13411925 | None:intergenic | 60.0% | |
| GCTTTGGCCCAACTCTTCGC+CGG | - | chr3_1:13411935-13411954 | None:intergenic | 60.0% | |
| CAAACACGTGGTGCTTCCGG+CGG | - | chr3_1:13412084-13412103 | None:intergenic | 60.0% | |
| GGCCAAACACGTGGTGCTTC+CGG | - | chr3_1:13412087-13412106 | None:intergenic | 60.0% | |
| CGAGTTCACGTTATCGGGCG+CGG | - | chr3_1:13412117-13412136 | None:intergenic | 60.0% | |
| CGCGCCCGATAACGTGAACT+CGG | + | chr3_1:13412115-13412134 | Msa0349550:CDS | 60.0% | |
| GGTCTATTGGGCTTGGGCCG+AGG | + | chr3_1:13411358-13411377 | Msa0349550:CDS | 65.0% | |
| !! | CGCCGGAAGCACCACGTGTT+TGG | + | chr3_1:13412082-13412101 | Msa0349550:CDS | 65.0% |
| GGCTGCCATGGCCAAACACG+TGG | - | chr3_1:13412096-13412115 | None:intergenic | 65.0% | |
| !! | TGGTGGGGCAGAGGTGCCTG+TGG | - | chr3_1:13411335-13411354 | None:intergenic | 70.0% |
| GGCACCTCTGCCCCACCACA+AGG | + | chr3_1:13411337-13411356 | Msa0349550:CDS | 70.0% | |
| GTTATCGGGCGCGGCTGCCA+TGG | - | chr3_1:13412108-13412127 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 13407986 | 13412702 | 13407986 | ID=Msa0349550;Name=Msa0349550 |
| chr3_1 | mRNA | 13407986 | 13412702 | 13407986 | ID=Msa0349550-mRNA-1;Parent=Msa0349550;Name=Msa0349550-mRNA-1;_AED=0.01;_eAED=0.01;_QI=68|1|1|1|1|1|3|467|438 |
| chr3_1 | exon | 13407986 | 13408536 | 13407986 | ID=Msa0349550-mRNA-1:exon:3371;Parent=Msa0349550-mRNA-1 |
| chr3_1 | exon | 13411187 | 13411661 | 13411187 | ID=Msa0349550-mRNA-1:exon:3372;Parent=Msa0349550-mRNA-1 |
| chr3_1 | exon | 13411877 | 13412702 | 13411877 | ID=Msa0349550-mRNA-1:exon:3373;Parent=Msa0349550-mRNA-1 |
| chr3_1 | five_prime_UTR | 13407986 | 13408053 | 13407986 | ID=Msa0349550-mRNA-1:five_prime_utr;Parent=Msa0349550-mRNA-1 |
| chr3_1 | CDS | 13408054 | 13408536 | 13408054 | ID=Msa0349550-mRNA-1:cds;Parent=Msa0349550-mRNA-1 |
| chr3_1 | CDS | 13411187 | 13411661 | 13411187 | ID=Msa0349550-mRNA-1:cds;Parent=Msa0349550-mRNA-1 |
| chr3_1 | CDS | 13411877 | 13412235 | 13411877 | ID=Msa0349550-mRNA-1:cds;Parent=Msa0349550-mRNA-1 |
| chr3_1 | three_prime_UTR | 13412236 | 13412702 | 13412236 | ID=Msa0349550-mRNA-1:three_prime_utr;Parent=Msa0349550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
