AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0128570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0128570 MtrunA17_Chr1g0195271 99.010 505 3 1 1 505 1 503 0.0 1041
Msa0128570 MtrunA17_Chr3g0119821 63.793 464 167 1 37 499 31 494 0.0 624
Msa0128570 MtrunA17_Chr8g0391391 62.581 465 171 2 38 499 27 491 0.0 607
Msa0128570 MtrunA17_Chr3g0145261 59.740 462 183 2 40 498 23 484 0.0 580
Msa0128570 MtrunA17_Chr3g0080171 60.087 461 178 3 41 499 25 481 0.0 563
Msa0128570 MtrunA17_Chr4g0018301 56.332 458 195 2 41 498 45 497 0.0 536
Msa0128570 MtrunA17_Chr4g0018361 57.356 469 185 6 40 498 26 489 0.0 528
Msa0128570 MtrunA17_Chr5g0397201 53.118 465 205 6 38 498 37 492 2.13e-172 495
Msa0128570 MtrunA17_Chr8g0388051 52.220 473 214 7 40 503 27 496 4.46e-168 489
Msa0128570 MtrunA17_Chr3g0119371 49.284 489 226 7 29 496 16 503 1.09e-161 469
Msa0128570 MtrunA17_Chr5g0439311 46.787 498 241 8 13 500 15 498 9.25e-161 466
Msa0128570 MtrunA17_Chr1g0164201 48.509 503 232 10 3 499 1 482 1.94e-150 438
Msa0128570 MtrunA17_Chr4g0038131 47.046 474 240 7 41 505 28 499 6.33e-145 430
Msa0128570 MtrunA17_Chr3g0086311 46.753 462 232 6 41 499 30 480 1.85e-142 418
Msa0128570 MtrunA17_Chr5g0397181 48.507 402 192 7 102 498 1 392 3.27e-131 386
Msa0128570 MtrunA17_Chr3g0142501 41.474 475 260 9 35 498 51 518 1.94e-119 361
Msa0128570 MtrunA17_Chr8g0372031 43.697 476 250 9 35 499 57 525 5.69e-117 355
Msa0128570 MtrunA17_Chr3g0136381 46.648 358 179 4 41 396 30 377 2.73e-114 344
Msa0128570 MtrunA17_Chr2g0291461 41.412 524 261 17 8 499 81 590 2.34e-99 312
Msa0128570 MtrunA17_Chr7g0269571 81.034 174 22 1 343 505 43 216 3.18e-98 296
Msa0128570 MtrunA17_Chr4g0018341 49.286 280 137 2 219 498 2 276 3.07e-97 295
Msa0128570 MtrunA17_Chr5g0444721 43.802 363 195 5 144 498 203 564 1.86e-96 303
Msa0128570 MtrunA17_Chr5g0444721 44.792 192 85 3 2 187 10 186 1.53e-42 159
Msa0128570 MtrunA17_Chr3g0120661 38.015 534 279 19 6 503 79 596 1.83e-91 291
Msa0128570 MtrunA17_Chr3g0126111 35.038 528 287 18 9 498 74 583 3.64e-88 282
Msa0128570 MtrunA17_Chr4g0018351 66.484 182 61 0 41 222 30 211 2.08e-78 244
Msa0128570 MtrunA17_Chr4g0022271 59.286 140 51 2 343 481 20 154 8.33e-52 174
Msa0128570 MtrunA17_Chr1g0164181 43.655 197 104 4 306 496 134 329 3.44e-43 155
Msa0128570 MtrunA17_Chr1g0164181 48.925 186 87 3 81 260 1 184 2.04e-42 154
Msa0128570 MtrunA17_Chr7g0269561 69.512 82 11 1 249 330 25 92 6.07e-33 121
Msa0128570 MtrunA17_Chr4g0072811 36.842 152 90 3 350 499 19 166 1.69e-25 103
Msa0128570 MtrunA17_Chr3g0136371 47.872 94 47 2 396 488 1 93 3.61e-23 94.4
Msa0128570 MtrunA17_Chr5g0397171 74.359 39 10 0 40 78 40 78 4.33e-14 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0128570 AT4G02290.1 76.634 505 116 1 1 505 14 516 0.0 807
Msa0128570 AT1G02800.1 74.553 503 124 2 1 501 1 501 0.0 767
Msa0128570 AT4G02290.2 78.713 404 86 0 102 505 1 404 0.0 676
Msa0128570 AT1G70710.1 61.935 465 176 1 38 501 25 489 0.0 599
Msa0128570 AT1G23210.1 60.691 463 182 0 37 499 24 486 0.0 591
Msa0128570 AT1G22880.1 57.490 494 192 4 9 501 5 481 0.0 566
Msa0128570 AT1G71380.1 56.073 494 201 4 7 499 1 479 0.0 562
Msa0128570 AT4G39010.1 57.692 468 194 3 40 503 28 495 0.0 559
Msa0128570 AT4G39000.1 53.205 468 215 3 35 498 19 486 2.05e-179 513
Msa0128570 AT4G23560.1 53.763 465 203 5 42 503 24 479 5.07e-170 488
Msa0128570 AT1G64390.1 52.119 472 214 7 37 499 21 489 7.27e-170 493
Msa0128570 AT4G38990.2 51.374 473 221 5 35 498 17 489 4.70e-168 484
Msa0128570 AT4G09740.1 53.017 464 206 5 41 501 23 477 3.45e-167 481
Msa0128570 AT4G11050.2 51.178 467 218 6 40 498 25 489 1.26e-165 480
Msa0128570 AT1G22880.2 56.858 401 168 2 102 501 1 397 1.29e-165 474
Msa0128570 AT4G11050.1 51.178 467 218 6 40 498 25 489 4.58e-165 481
Msa0128570 AT4G11050.3 51.178 467 218 6 40 498 25 489 6.35e-165 481
Msa0128570 AT2G32990.1 49.296 497 236 7 9 496 13 502 1.72e-164 476
Msa0128570 AT2G44540.1 49.567 462 221 7 41 496 33 488 2.45e-150 439
Msa0128570 AT2G44570.1 49.893 469 222 8 38 499 30 492 6.30e-149 435
Msa0128570 AT2G44550.1 49.138 464 223 8 41 498 33 489 1.99e-148 434
Msa0128570 AT4G39010.2 56.667 360 152 3 40 395 28 387 2.78e-148 430
Msa0128570 AT3G43860.2 48.918 462 222 6 41 499 34 484 1.52e-147 432
Msa0128570 AT3G43860.1 48.918 462 222 6 41 499 34 484 1.52e-147 432
Msa0128570 AT2G44560.1 49.893 467 222 7 39 499 31 491 3.83e-146 428
Msa0128570 AT1G48930.1 47.122 469 230 7 40 496 29 491 1.32e-133 401
Msa0128570 AT1G19940.2 45.435 460 237 7 41 493 48 500 6.75e-130 387
Msa0128570 AT1G19940.1 45.435 460 237 7 41 493 48 500 6.75e-130 387
Msa0128570 AT1G75680.1 47.033 455 227 7 42 489 58 505 2.52e-129 386
Msa0128570 AT1G22880.3 56.936 346 131 4 9 353 5 333 7.94e-124 365
Msa0128570 AT2G44570.2 47.632 380 187 7 38 411 30 403 4.69e-105 320
Msa0128570 AT4G38990.1 49.412 340 147 3 35 372 17 333 2.67e-104 316
Msa0128570 AT5G49720.1 40.655 519 260 18 14 499 84 587 6.60e-93 295
Msa0128570 AT1G19940.3 44.353 363 192 6 41 396 48 407 1.70e-92 288
Msa0128570 AT4G24260.1 40.000 520 269 16 12 499 79 587 1.17e-90 290
Msa0128570 AT1G65610.1 37.336 533 278 20 6 504 86 596 6.64e-88 282
Msa0128570 AT4G24260.3 38.918 388 198 15 41 396 108 488 1.28e-53 188
Msa0128570 AT4G24260.2 40.058 347 174 12 12 329 79 420 4.62e-52 183

Find 162 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCCCTTCTCACTAAAATTT+TGG 0.161476 1_3:+58362736 None:intergenic
ACCAGAGTAATCACAGTAAA+AGG 0.170221 1_3:+58362549 None:intergenic
CATTAACTTGAATGTAATTT+AGG 0.180687 1_3:+58362370 None:intergenic
ATGTGATTTGGTCAAGTATT+TGG 0.246836 1_3:+58361892 None:intergenic
GCTGAACATTGGATCTTTCC+TGG 0.246957 1_3:+58361594 None:intergenic
GCAGGTGCCACTTTGCTCTT+TGG 0.251884 1_3:-58363604 Msa0128570:five_prime_UTR
CTGTGATTACTCTGGTTATC+AGG 0.254164 1_3:-58362542 Msa0128570:intron
CTAAATTACATTCAAGTTAA+TGG 0.258488 1_3:-58362369 Msa0128570:CDS
GCACACTCCCTCTGTCTTGC+AGG 0.275228 1_3:-58363622 Msa0128570:five_prime_UTR
TCAATCTTGAAAACACTTCT+TGG 0.276130 1_3:+58362851 None:intergenic
TTCGTTTGCTCTTTAATTCC+TGG 0.293478 1_3:-58362114 Msa0128570:CDS
CTACTAGAATGTTGGGATTA+GGG 0.293793 1_3:+58361544 None:intergenic
GCTAAGGTTCTGAGTCTCTT+TGG 0.294218 1_3:+58361836 None:intergenic
GAGTCTCTTTGGTGTTACTA+TGG 0.297437 1_3:+58361847 None:intergenic
AAAACTAACCTGAACATAAA+TGG 0.298563 1_3:+58363014 None:intergenic
TTACTACCACTATGCTTTCA+TGG 0.301130 1_3:-58363143 Msa0128570:CDS
TCATAATCTGACCGTTTATC+TGG 0.305225 1_3:+58361483 None:intergenic
AAGGGAGCTTCCCTGATCTT+TGG 0.305493 1_3:+58363377 None:intergenic
CCTACTAGAATGTTGGGATT+AGG 0.337619 1_3:+58361543 None:intergenic
TTCTTTGAAGGCCAAAGATC+AGG 0.342290 1_3:-58363388 Msa0128570:CDS
TTCAAAGAAGAGAATGGATT+TGG 0.342834 1_3:+58363402 None:intergenic
AAATCCATTCTCTTCTTTGA+AGG 0.351496 1_3:-58363400 Msa0128570:CDS
CAAGACATTCTCTGGTTAGA+AGG 0.353740 1_3:+58363358 None:intergenic
CTTGGTGTGTCCATATCTTC+TGG 0.355409 1_3:+58362869 None:intergenic
ATGTTAAACTATGTATGATT+GGG 0.356814 1_3:-58361196 Msa0128570:three_prime_UTR
CACATCCACTAGCTTCTTAC+TGG 0.357156 1_3:-58361924 Msa0128570:CDS
ACCAGCATCTCCAACTTGTT+TGG 0.360579 1_3:-58361376 Msa0128570:three_prime_UTR
AATGTTAAACTATGTATGAT+TGG 0.361900 1_3:-58361197 Msa0128570:three_prime_UTR
TGCTCTTTAATTCCTGGAGC+TGG 0.363000 1_3:-58362108 Msa0128570:CDS
TCATGGAGTGTTATTGAGTT+TGG 0.368140 1_3:-58363126 Msa0128570:CDS
GGAGAAGGAAGAGGAAGGAT+AGG 0.373681 1_3:+58363524 None:intergenic
ATGTACAATGTAGGTTGATT+TGG 0.376793 1_3:-58363220 Msa0128570:intron
TCCAAACACCATTTATGTTC+AGG 0.394784 1_3:-58363022 Msa0128570:intron
TCCAAACAAGTTGGAGATGC+TGG 0.394971 1_3:+58361375 None:intergenic
GAAGGTGGGAGATGCTAAAA+AGG 0.395703 1_3:-58362912 Msa0128570:intron
TTGTACCTGTTTCTTGGCTA+AGG 0.398642 1_3:+58361820 None:intergenic
GCAGAGTTTGACAACACATT+TGG 0.404186 1_3:-58362330 Msa0128570:CDS
TTGTTAGGATGAGTTGTTGT+GGG 0.416277 1_3:-58362433 Msa0128570:intron
ACCTGAACATAAATGGTGTT+TGG 0.417646 1_3:+58363021 None:intergenic
CTAGTAGGTGCTGTTGTTGG+AGG 0.421002 1_3:-58361528 Msa0128570:CDS
GCTTATCTTGCACACTCATT+CGG 0.425169 1_3:-58361411 Msa0128570:CDS
TTGGGAGAGACCAGAAGATA+TGG 0.426795 1_3:-58362879 Msa0128570:CDS
GAGGACCAGATCAGCATGAT+AGG 0.431517 1_3:-58361509 Msa0128570:CDS
GCTGGTGACAATGTCAAGTT+TGG 0.431994 1_3:-58363180 Msa0128570:CDS
GGCGATGGAGTGGGAAGGCA+TGG 0.435448 1_3:+58363467 None:intergenic
CCTGGGTGTACAGCCATTGA+AGG 0.436838 1_3:+58361612 None:intergenic
GGAAGGATAGGGAAAGGGAA+AGG 0.439572 1_3:+58363536 None:intergenic
TTGGCCTTCAAAGAAGAGAA+TGG 0.439709 1_3:+58363396 None:intergenic
CCCCTGTGGTGTATCCTTTG+TGG 0.441573 1_3:+58361645 None:intergenic
ATTCTAGTAGGTGCTGTTGT+TGG 0.445902 1_3:-58361531 Msa0128570:CDS
CAAGTTAATGGTCAAATCCT+AGG 0.446620 1_3:-58362357 Msa0128570:CDS
GAAGGATAGGGAAAGGGAAA+GGG 0.446693 1_3:+58363537 None:intergenic
TGTTAGGTGGATTACTTGCT+AGG 0.447232 1_3:-58361717 Msa0128570:intron
GTTTGACAACACATTTGGTT+GGG 0.449029 1_3:-58362325 Msa0128570:CDS
TGAGTTTGGTGGGTTGATGA+AGG 0.451134 1_3:-58363112 Msa0128570:CDS
GTGCCACTTTGCTCTTTGGT+TGG 0.453723 1_3:-58363600 Msa0128570:five_prime_UTR
GTTGGAGGGTATTATGATGC+TGG 0.454607 1_3:-58363198 Msa0128570:CDS
CTGAACATTGGATCTTTCCT+GGG 0.455368 1_3:+58361595 None:intergenic
CAAAGTGAGGGTGGTGGCGA+TGG 0.456403 1_3:+58363452 None:intergenic
ACGCACAACAGAATGTGATT+TGG 0.456608 1_3:+58361880 None:intergenic
GGAAACCTATCATGCTGATC+TGG 0.457186 1_3:+58361504 None:intergenic
GAGAAAGAAGGAGAAGGAAG+AGG 0.457200 1_3:+58363515 None:intergenic
TATGTTAATGCACCACTTGT+GGG 0.460697 1_3:-58361441 Msa0128570:CDS
TTTAGGAATTTCTAGTTCAA+AGG 0.464717 1_3:-58362176 Msa0128570:intron
TTAGGAATTTCTAGTTCAAA+GGG 0.464908 1_3:-58362175 Msa0128570:intron
CAGAACCTTAGCCAAGAAAC+AGG 0.467748 1_3:-58361825 Msa0128570:intron
AGTTGTTGTGGGGTGCTGCT+TGG 0.467899 1_3:-58362422 Msa0128570:CDS
ATGATAGGTTTCCAGATAAA+CGG 0.470251 1_3:-58361494 Msa0128570:CDS
ATGTCATACATGGTGGGGTA+TGG 0.473593 1_3:-58361678 Msa0128570:CDS
GGGATCATCACTTCCTTCAA+TGG 0.474143 1_3:-58361625 Msa0128570:CDS
GCAGAAGAGGATCCAGCTCC+AGG 0.475179 1_3:+58362096 None:intergenic
ACCATGTATGACATCTTCAA+TGG 0.476433 1_3:+58361687 None:intergenic
CGAATAGCTTCTCTAGCATT+AGG 0.477541 1_3:+58363081 None:intergenic
TGTAGGTTGATTTGGTTGGA+GGG 0.478012 1_3:-58363212 Msa0128570:intron
GGAAGAGGAAGGATAGGGAA+AGG 0.478406 1_3:+58363530 None:intergenic
GGAAAGATCCAATGTTCAGC+AGG 0.479066 1_3:-58361591 Msa0128570:CDS
GAAGAGGAAGGATAGGGAAA+GGG 0.482475 1_3:+58363531 None:intergenic
GGTGCATTAACATAAGTTGC+TGG 0.482529 1_3:+58361450 None:intergenic
TGAGGGTGGTGGCGATGGAG+TGG 0.482898 1_3:+58363457 None:intergenic
ACAGCACCTACTAGAATGTT+GGG 0.484006 1_3:+58361537 None:intergenic
AGCAAACGAAATTGTCTGAA+TGG 0.484341 1_3:+58362127 None:intergenic
TGAATGTAATTTAGGTACAT+TGG 0.486981 1_3:+58362378 None:intergenic
CCTAATCCCAACATTCTAGT+AGG 0.487578 1_3:-58361543 Msa0128570:CDS
TGCTAGAGAAGCTATTCGTT+GGG 0.488469 1_3:-58363076 Msa0128570:CDS
CACTGAACCCTGCTGAACAT+TGG 0.488575 1_3:+58361583 None:intergenic
AACAGCACCTACTAGAATGT+TGG 0.493607 1_3:+58361536 None:intergenic
TGGAGTGTTATTGAGTTTGG+TGG 0.494692 1_3:-58363123 Msa0128570:CDS
ATGTAGGTTGATTTGGTTGG+AGG 0.495740 1_3:-58363213 Msa0128570:intron
GGAGTGGGAAGGCATGGGTA+TGG 0.495769 1_3:+58363473 None:intergenic
AGTTTGACAACACATTTGGT+TGG 0.497629 1_3:-58362326 Msa0128570:CDS
TGTCAAACTCTGCAGCTCCT+AGG 0.498646 1_3:+58362340 None:intergenic
GAGGGTGGTGGCGATGGAGT+GGG 0.499968 1_3:+58363458 None:intergenic
TTATGTTAATGCACCACTTG+TGG 0.503544 1_3:-58361442 Msa0128570:CDS
GAGAAGGAAGAGGAAGGATA+GGG 0.507061 1_3:+58363525 None:intergenic
AAAATCCCTCCATGACTACA+AGG 0.507819 1_3:-58362151 Msa0128570:CDS
ATGCTAGAGAAGCTATTCGT+TGG 0.512170 1_3:-58363077 Msa0128570:CDS
AAGAAGGAGAAGGAAGAGGA+AGG 0.514231 1_3:+58363519 None:intergenic
GGTTTCAAGACATTGCTGTA+AGG 0.515521 1_3:+58362583 None:intergenic
AGCAAGGATACTTCTTTCAA+AGG 0.517132 1_3:-58362286 Msa0128570:intron
TACTAGAATGTTGGGATTAG+GGG 0.517279 1_3:+58361545 None:intergenic
CTGAATGGCCCTTGTAGTCA+TGG 0.518588 1_3:+58362142 None:intergenic
AGAAGAGAGAAAGAAGGAGA+AGG 0.523733 1_3:+58363509 None:intergenic
CCAGAGTAATCACAGTAAAA+GGG 0.524276 1_3:+58362550 None:intergenic
CTTCTAACCAGAGAATGTCT+TGG 0.526372 1_3:-58363357 Msa0128570:CDS
GGTTGGGATAACAAACATGT+TGG 0.527280 1_3:-58362309 Msa0128570:CDS
TGTATCCTTTGTGGATACCT+TGG 0.528138 1_3:+58361654 None:intergenic
AAGAAGAGAAGAGAGAAAGA+AGG 0.528528 1_3:+58363503 None:intergenic
AAGATTGATGCAAATGCACC+TGG 0.531369 1_3:-58362836 Msa0128570:CDS
AGTGTGCTCTGTTTAATGCT+TGG 0.531592 1_3:+58363638 None:intergenic
TTTAGTGAGAAGGGCTATCA+GGG 0.533210 1_3:-58362729 Msa0128570:intron
GAGTTTGGTGGGTTGATGAA+GGG 0.533504 1_3:-58363111 Msa0128570:CDS
TCAGATTCATCCAAACAAGT+TGG 0.535707 1_3:+58361366 None:intergenic
CTGGTCTCTCCCAACAAGCA+TGG 0.538685 1_3:+58362888 None:intergenic
TCTTTGAAGGCCAAAGATCA+GGG 0.542600 1_3:-58363387 Msa0128570:CDS
CCATGTATGACATCTTCAAT+GGG 0.544092 1_3:+58361688 None:intergenic
ACAATGTAGGTTGATTTGGT+TGG 0.544250 1_3:-58363216 Msa0128570:intron
CCCATTGAAGATGTCATACA+TGG 0.547188 1_3:-58361688 Msa0128570:CDS
TGTTAAACTATGTATGATTG+GGG 0.548081 1_3:-58361195 Msa0128570:three_prime_UTR
CAGTAAAAGGGACAGACAAA+GGG 0.548513 1_3:+58362562 None:intergenic
GGAGTGTTATTGAGTTTGGT+GGG 0.550172 1_3:-58363122 Msa0128570:CDS
ACAGTAAAAGGGACAGACAA+AGG 0.562752 1_3:+58362561 None:intergenic
CTTGTTAGGATGAGTTGTTG+TGG 0.568257 1_3:-58362434 Msa0128570:intron
AAAGACTCTGGTCTCTCTGA+TGG 0.569077 1_3:-58363331 Msa0128570:CDS
GCGATGGAGTGGGAAGGCAT+GGG 0.569614 1_3:+58363468 None:intergenic
AAGACATTCTCTGGTTAGAA+GGG 0.573762 1_3:+58363359 None:intergenic
ATGTCTTGGAGAAAAGACTC+TGG 0.573843 1_3:-58363343 Msa0128570:CDS
ATCCACAAAGGATACACCAC+AGG 0.581594 1_3:-58361647 Msa0128570:CDS
TTGAAGATGTCATACATGGT+GGG 0.582564 1_3:-58361684 Msa0128570:CDS
TAAGCAAGTGTTCCCACAAG+TGG 0.582903 1_3:+58361429 None:intergenic
TGGGGTATATTGTGCAGAAG+AGG 0.588731 1_3:+58362083 None:intergenic
TCTGCAGCAACTTCAGAACC+AGG 0.590338 1_3:+58362818 None:intergenic
TCACATTCTGTTGTGCGTTG+TGG 0.597476 1_3:-58361875 Msa0128570:CDS
CATTCTGTTGTGCGTTGTGG+TGG 0.598006 1_3:-58361872 Msa0128570:CDS
TGTGAGTGGCAAAGTGAGGG+TGG 0.602326 1_3:+58363443 None:intergenic
TGAAGATGTCATACATGGTG+GGG 0.604622 1_3:-58361683 Msa0128570:CDS
AACACTCCATGAAAGCATAG+TGG 0.607639 1_3:+58363137 None:intergenic
ATAACAAACATGTTGGAGCA+AGG 0.610200 1_3:-58362302 Msa0128570:CDS
CCTTCAATGGCTGTACACCC+AGG 0.614449 1_3:-58361612 Msa0128570:CDS
AGCTACCAGTAAGAAGCTAG+TGG 0.617412 1_3:+58361919 None:intergenic
TCTTCTGCACAATATACCCC+AGG 0.617991 1_3:-58362081 Msa0128570:intron
GTGGTGGCGATGGAGTGGGA+AGG 0.619272 1_3:+58363462 None:intergenic
AAGTGGCACCTGCAAGACAG+AGG 0.620249 1_3:+58363614 None:intergenic
ATAGTGGTAGTAAAAGCCAT+AGG 0.628059 1_3:+58363153 None:intergenic
ATGGCCCTTGTAGTCATGGA+GGG 0.631433 1_3:+58362146 None:intergenic
AGTGGCACCTGCAAGACAGA+GGG 0.634799 1_3:+58363615 None:intergenic
TGTTAGGATGAGTTGTTGTG+GGG 0.636308 1_3:-58362432 Msa0128570:intron
ACAATGAGTAAGTTTCATTG+TGG 0.638295 1_3:-58361242 Msa0128570:three_prime_UTR
ATTGAAGATGTCATACATGG+TGG 0.647567 1_3:-58361685 Msa0128570:CDS
TAACCAACCAAAGAGCAAAG+TGG 0.652720 1_3:+58363597 None:intergenic
ACATGGTGGGGTATGGACCA+AGG 0.656858 1_3:-58361671 Msa0128570:CDS
TAGTTGTGAGTGGCAAAGTG+AGG 0.663280 1_3:+58363439 None:intergenic
AATGGCCCTTGTAGTCATGG+AGG 0.663344 1_3:+58362145 None:intergenic
GAAAGATCCAATGTTCAGCA+GGG 0.663959 1_3:-58361590 Msa0128570:CDS
TGCATCTCTGTAGTTGTGAG+TGG 0.664791 1_3:+58363429 None:intergenic
AGTTGTGAGTGGCAAAGTGA+GGG 0.678935 1_3:+58363440 None:intergenic
GAGTGGCAAAGTGAGGGTGG+TGG 0.679747 1_3:+58363446 None:intergenic
ATGGACCAAGGTATCCACAA+AGG 0.706125 1_3:-58361659 Msa0128570:CDS
TCCACAAAGGATACACCACA+GGG 0.706214 1_3:-58361646 Msa0128570:CDS
CAGTTTGCTGATCAACACAG+AGG 0.707543 1_3:-58362607 Msa0128570:CDS
AAATCCCTCCATGACTACAA+GGG 0.708720 1_3:-58362150 Msa0128570:CDS
AAGGAAGTGATGATCCCCTG+TGG 0.807933 1_3:+58361631 None:intergenic
CCACAAAGGATACACCACAG+GGG 0.846463 1_3:-58361645 Msa0128570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGATGAAAAAAAATTAAAAA+TGG - chr1_3:58362075-58362094 Msa0128570:intron 10.0%
!! TAAATTTCATTATTTCAATT+AGG + chr1_3:58362979-58362998 None:intergenic 10.0%
!!! TGATTTTGATTAATTTTTGT+TGG - chr1_3:58363021-58363040 Msa0128570:intron 15.0%
!!! ATATCTTTGTTGCTTATTTT+TGG - chr1_3:58361520-58361539 Msa0128570:CDS 20.0%
!!! CATTAACTTGAATGTAATTT+AGG + chr1_3:58362401-58362420 None:intergenic 20.0%
!!! CTAAATTACATTCAAGTTAA+TGG - chr1_3:58362399-58362418 Msa0128570:CDS 20.0%
!!! TTAATTTGTTTGATACTATG+TGG + chr1_3:58362520-58362539 None:intergenic 20.0%
!!! CATTTTTTTTTGTTTGTTTG+TGG - chr1_3:58362560-58362579 Msa0128570:CDS 20.0%
!!! TTTTGTTGGTATTTTTTGTT+AGG - chr1_3:58363035-58363054 Msa0128570:CDS 20.0%
!!! TTAGTACTAGTACTTTTAAT+TGG - chr1_3:58363468-58363487 Msa0128570:CDS 20.0%
!! AATGTTAAACTATGTATGAT+TGG - chr1_3:58363571-58363590 Msa0128570:five_prime_UTR 20.0%
!! ATGTTAAACTATGTATGATT+GGG - chr1_3:58363572-58363591 Msa0128570:five_prime_UTR 20.0%
! AAAACTAACCTGAACATAAA+TGG + chr1_3:58361757-58361776 None:intergenic 25.0%
!!! TGGTTTTTGAGATTTTGTTA+AGG - chr1_3:58361791-58361810 Msa0128570:intron 25.0%
!! ATTTTGTTAAGGAGAAAACA+TGG - chr1_3:58361802-58361821 Msa0128570:intron 25.0%
!!! TTTTTGGGTTTTTTGTTTGA+AGG - chr1_3:58361838-58361857 Msa0128570:CDS 25.0%
!!! ACTAAAATTTTGGAGTATGT+TGG + chr1_3:58362025-58362044 None:intergenic 25.0%
!!! ATTATAGTACTTTTGACTGA+TGG - chr1_3:58362300-58362319 Msa0128570:CDS 25.0%
!!! TTATAGTACTTTTGACTGAT+GGG - chr1_3:58362301-58362320 Msa0128570:CDS 25.0%
! TGAATGTAATTTAGGTACAT+TGG + chr1_3:58362393-58362412 None:intergenic 25.0%
!!! TTTAGGAATTTCTAGTTCAA+AGG - chr1_3:58362592-58362611 Msa0128570:CDS 25.0%
!!! TTAGGAATTTCTAGTTCAAA+GGG - chr1_3:58362593-58362612 Msa0128570:CDS 25.0%
!!! TATCTCAGTTTTAACTCTAT+TGG - chr1_3:58362728-58362747 Msa0128570:intron 25.0%
! TGTTAAACTATGTATGATTG+GGG - chr1_3:58363573-58363592 Msa0128570:five_prime_UTR 25.0%
!! TCATTTTGAAGAGTGTGAAA+GGG + chr1_3:58361211-58361230 None:intergenic 30.0%
! TTCAAAGAAGAGAATGGATT+TGG + chr1_3:58361369-58361388 None:intergenic 30.0%
AAATCCATTCTCTTCTTTGA+AGG - chr1_3:58361368-58361387 Msa0128570:three_prime_UTR 30.0%
TTGGCTTAAATGTACAATGT+AGG - chr1_3:58361539-58361558 Msa0128570:CDS 30.0%
!! ATGTACAATGTAGGTTGATT+TGG - chr1_3:58361548-58361567 Msa0128570:CDS 30.0%
! AGTTTTTCTTCTTCTGTTCA+TGG - chr1_3:58361771-58361790 Msa0128570:intron 30.0%
!! TGGTAAATGAGGTTGATTTT+TGG - chr1_3:58361822-58361841 Msa0128570:intron 30.0%
!! GGTAAATGAGGTTGATTTTT+GGG - chr1_3:58361823-58361842 Msa0128570:intron 30.0%
TCAATCTTGAAAACACTTCT+TGG + chr1_3:58361920-58361939 None:intergenic 30.0%
!! ACTCCAAAATTTTAGTGAGA+AGG - chr1_3:58362029-58362048 Msa0128570:intron 30.0%
!! CTCCAAAATTTTAGTGAGAA+GGG - chr1_3:58362030-58362049 Msa0128570:intron 30.0%
AGATTGTGTTTCTTTCTCTT+TGG - chr1_3:58362126-58362145 Msa0128570:CDS 30.0%
GATTGTGTTTCTTTCTCTTT+GGG - chr1_3:58362127-58362146 Msa0128570:CDS 30.0%
AGTATGACTCAAGTAAAAAC+TGG + chr1_3:58362276-58362295 None:intergenic 30.0%
GATACTATGTGGTGAAATTT+AGG + chr1_3:58362509-58362528 None:intergenic 30.0%
!!! GTTTGTGGTTTTGTGATTTT+AGG - chr1_3:58362575-58362594 Msa0128570:CDS 30.0%
AAACTGAGATAGAAGAAAGA+GGG + chr1_3:58362719-58362738 None:intergenic 30.0%
AAAACTGAGATAGAAGAAAG+AGG + chr1_3:58362720-58362739 None:intergenic 30.0%
!! TTAACTCTATTGGTTTCATG+TGG - chr1_3:58362738-58362757 Msa0128570:CDS 30.0%
!! ATGTGATTTGGTCAAGTATT+TGG + chr1_3:58362879-58362898 None:intergenic 30.0%
!! GTATTTTTGTACCTGTTTCT+TGG + chr1_3:58362957-58362976 None:intergenic 30.0%
!!! TGTTGGTATTTTTTGTTAGG+TGG - chr1_3:58363038-58363057 Msa0128570:CDS 30.0%
ATGATAGGTTTCCAGATAAA+CGG - chr1_3:58363274-58363293 Msa0128570:intron 30.0%
ACAATGAGTAAGTTTCATTG+TGG - chr1_3:58363526-58363545 Msa0128570:CDS 30.0%
!! GTCATTTTGAAGAGTGTGAA+AGG + chr1_3:58361212-58361231 None:intergenic 35.0%
AAGAAGAGAAGAGAGAAAGA+AGG + chr1_3:58361268-58361287 None:intergenic 35.0%
AAGACATTCTCTGGTTAGAA+GGG + chr1_3:58361412-58361431 None:intergenic 35.0%
!! ACAATGTAGGTTGATTTGGT+TGG - chr1_3:58361552-58361571 Msa0128570:CDS 35.0%
!!! TGTCAAGTTTGGTTTTCCTA+TGG - chr1_3:58361599-58361618 Msa0128570:CDS 35.0%
ATAGTGGTAGTAAAAGCCAT+AGG + chr1_3:58361618-58361637 None:intergenic 35.0%
TTACTACCACTATGCTTTCA+TGG - chr1_3:58361625-58361644 Msa0128570:CDS 35.0%
! TCATGGAGTGTTATTGAGTT+TGG - chr1_3:58361642-58361661 Msa0128570:CDS 35.0%
TCCAAACACCATTTATGTTC+AGG - chr1_3:58361746-58361765 Msa0128570:intron 35.0%
ACCTGAACATAAATGGTGTT+TGG + chr1_3:58361750-58361769 None:intergenic 35.0%
AGGAGAAAACATGGTAAATG+AGG - chr1_3:58361811-58361830 Msa0128570:intron 35.0%
!!! TTGGGTTTTTTGTTTGAAGG+TGG - chr1_3:58361841-58361860 Msa0128570:CDS 35.0%
!!! TGGGTTTTTTGTTTGAAGGT+GGG - chr1_3:58361842-58361861 Msa0128570:CDS 35.0%
TAAAAAGGACCATGCTTGTT+GGG - chr1_3:58361871-58361890 Msa0128570:CDS 35.0%
! AGCCCTTCTCACTAAAATTT+TGG + chr1_3:58362035-58362054 None:intergenic 35.0%
! GTTTCTTTCTCTTTGGGTTT+AGG - chr1_3:58362133-58362152 Msa0128570:CDS 35.0%
CCAGAGTAATCACAGTAAAA+GGG + chr1_3:58362221-58362240 None:intergenic 35.0%
ACCAGAGTAATCACAGTAAA+AGG + chr1_3:58362222-58362241 None:intergenic 35.0%
TCAAGTAAAAACTGGCACAA+TGG + chr1_3:58362268-58362287 None:intergenic 35.0%
!! TGGGTTTGTAATGACTTGTT+AGG - chr1_3:58362320-58362339 Msa0128570:CDS 35.0%
TTGTTAGGATGAGTTGTTGT+GGG - chr1_3:58362335-58362354 Msa0128570:CDS 35.0%
CAAGTTAATGGTCAAATCCT+AGG - chr1_3:58362411-58362430 Msa0128570:CDS 35.0%
AGTTTGACAACACATTTGGT+TGG - chr1_3:58362442-58362461 Msa0128570:intron 35.0%
GTTTGACAACACATTTGGTT+GGG - chr1_3:58362443-58362462 Msa0128570:intron 35.0%
ATAACAAACATGTTGGAGCA+AGG - chr1_3:58362466-58362485 Msa0128570:intron 35.0%
AGCAAGGATACTTCTTTCAA+AGG - chr1_3:58362482-58362501 Msa0128570:intron 35.0%
AGCAAACGAAATTGTCTGAA+TGG + chr1_3:58362644-58362663 None:intergenic 35.0%
TTCGTTTGCTCTTTAATTCC+TGG - chr1_3:58362654-58362673 Msa0128570:intron 35.0%
GCTCAAAAACAGTTACAACT+TGG + chr1_3:58362765-58362784 None:intergenic 35.0%
TTGAGCTTGTGAAACTTTAC+AGG - chr1_3:58362779-58362798 Msa0128570:CDS 35.0%
CCATGTATGACATCTTCAAT+GGG + chr1_3:58363083-58363102 None:intergenic 35.0%
ACCATGTATGACATCTTCAA+TGG + chr1_3:58363084-58363103 None:intergenic 35.0%
ATTGAAGATGTCATACATGG+TGG - chr1_3:58363083-58363102 Msa0128570:CDS 35.0%
TTGAAGATGTCATACATGGT+GGG - chr1_3:58363084-58363103 Msa0128570:CDS 35.0%
TACTAGAATGTTGGGATTAG+GGG + chr1_3:58363226-58363245 None:intergenic 35.0%
CTACTAGAATGTTGGGATTA+GGG + chr1_3:58363227-58363246 None:intergenic 35.0%
TCATAATCTGACCGTTTATC+TGG + chr1_3:58363288-58363307 None:intergenic 35.0%
TTATGTTAATGCACCACTTG+TGG - chr1_3:58363326-58363345 Msa0128570:CDS 35.0%
TATGTTAATGCACCACTTGT+GGG - chr1_3:58363327-58363346 Msa0128570:CDS 35.0%
TCAGATTCATCCAAACAAGT+TGG + chr1_3:58363405-58363424 None:intergenic 35.0%
AGTGTGCTCTGTTTAATGCT+TGG + chr1_3:58361133-58361152 None:intergenic 40.0%
TAACCAACCAAAGAGCAAAG+TGG + chr1_3:58361174-58361193 None:intergenic 40.0%
AGAAGAGAGAAAGAAGGAGA+AGG + chr1_3:58361262-58361281 None:intergenic 40.0%
! TTGGCCTTCAAAGAAGAGAA+TGG + chr1_3:58361375-58361394 None:intergenic 40.0%
! TTCTTTGAAGGCCAAAGATC+AGG - chr1_3:58361380-58361399 Msa0128570:three_prime_UTR 40.0%
! TCTTTGAAGGCCAAAGATCA+GGG - chr1_3:58361381-58361400 Msa0128570:three_prime_UTR 40.0%
CAAGACATTCTCTGGTTAGA+AGG + chr1_3:58361413-58361432 None:intergenic 40.0%
CTTCTAACCAGAGAATGTCT+TGG - chr1_3:58361411-58361430 Msa0128570:CDS 40.0%
! CTTTTCTCCAAGACATTCTC+TGG + chr1_3:58361421-58361440 None:intergenic 40.0%
ATGTCTTGGAGAAAAGACTC+TGG - chr1_3:58361425-58361444 Msa0128570:CDS 40.0%
!! ATGTAGGTTGATTTGGTTGG+AGG - chr1_3:58361555-58361574 Msa0128570:CDS 40.0%
!! TGTAGGTTGATTTGGTTGGA+GGG - chr1_3:58361556-58361575 Msa0128570:CDS 40.0%
! AACACTCCATGAAAGCATAG+TGG + chr1_3:58361634-58361653 None:intergenic 40.0%
! TGGAGTGTTATTGAGTTTGG+TGG - chr1_3:58361645-58361664 Msa0128570:CDS 40.0%
! GGAGTGTTATTGAGTTTGGT+GGG - chr1_3:58361646-58361665 Msa0128570:CDS 40.0%
CGAATAGCTTCTCTAGCATT+AGG + chr1_3:58361690-58361709 None:intergenic 40.0%
ATGCTAGAGAAGCTATTCGT+TGG - chr1_3:58361691-58361710 Msa0128570:CDS 40.0%
TGCTAGAGAAGCTATTCGTT+GGG - chr1_3:58361692-58361711 Msa0128570:CDS 40.0%
CTAAAAAGGACCATGCTTGT+TGG - chr1_3:58361870-58361889 Msa0128570:CDS 40.0%
AAGATTGATGCAAATGCACC+TGG - chr1_3:58361932-58361951 Msa0128570:CDS 40.0%
! TTTTAGTGAGAAGGGCTATC+AGG - chr1_3:58362038-58362057 Msa0128570:intron 40.0%
TTTAGTGAGAAGGGCTATCA+GGG - chr1_3:58362039-58362058 Msa0128570:intron 40.0%
GGTTTCAAGACATTGCTGTA+AGG + chr1_3:58362188-58362207 None:intergenic 40.0%
CAGTAAAAGGGACAGACAAA+GGG + chr1_3:58362209-58362228 None:intergenic 40.0%
ACAGTAAAAGGGACAGACAA+AGG + chr1_3:58362210-58362229 None:intergenic 40.0%
! CCCTTTTACTGTGATTACTC+TGG - chr1_3:58362218-58362237 Msa0128570:intron 40.0%
CTGTGATTACTCTGGTTATC+AGG - chr1_3:58362226-58362245 Msa0128570:intron 40.0%
CTTGTTAGGATGAGTTGTTG+TGG - chr1_3:58362334-58362353 Msa0128570:CDS 40.0%
TGTTAGGATGAGTTGTTGTG+GGG - chr1_3:58362336-58362355 Msa0128570:CDS 40.0%
GCAGAGTTTGACAACACATT+TGG - chr1_3:58362438-58362457 Msa0128570:intron 40.0%
GGTTGGGATAACAAACATGT+TGG - chr1_3:58362459-58362478 Msa0128570:intron 40.0%
AAAATCCCTCCATGACTACA+AGG - chr1_3:58362617-58362636 Msa0128570:intron 40.0%
AAATCCCTCCATGACTACAA+GGG - chr1_3:58362618-58362637 Msa0128570:intron 40.0%
AGCTTGTGAAACTTTACAGG+TGG - chr1_3:58362782-58362801 Msa0128570:CDS 40.0%
GCTTGTGAAACTTTACAGGT+GGG - chr1_3:58362783-58362802 Msa0128570:CDS 40.0%
ACGCACAACAGAATGTGATT+TGG + chr1_3:58362891-58362910 None:intergenic 40.0%
!! GAGTCTCTTTGGTGTTACTA+TGG + chr1_3:58362924-58362943 None:intergenic 40.0%
! TTGTACCTGTTTCTTGGCTA+AGG + chr1_3:58362951-58362970 None:intergenic 40.0%
!! TGTTAGGTGGATTACTTGCT+AGG - chr1_3:58363051-58363070 Msa0128570:CDS 40.0%
CCCATTGAAGATGTCATACA+TGG - chr1_3:58363080-58363099 Msa0128570:CDS 40.0%
TGAAGATGTCATACATGGTG+GGG - chr1_3:58363085-58363104 Msa0128570:CDS 40.0%
TGTATCCTTTGTGGATACCT+TGG + chr1_3:58363117-58363136 None:intergenic 40.0%
CTGAACATTGGATCTTTCCT+GGG + chr1_3:58363176-58363195 None:intergenic 40.0%
GAAAGATCCAATGTTCAGCA+GGG - chr1_3:58363178-58363197 Msa0128570:CDS 40.0%
CCTACTAGAATGTTGGGATT+AGG + chr1_3:58363228-58363247 None:intergenic 40.0%
CCTAATCCCAACATTCTAGT+AGG - chr1_3:58363225-58363244 Msa0128570:intron 40.0%
ACAGCACCTACTAGAATGTT+GGG + chr1_3:58363234-58363253 None:intergenic 40.0%
AACAGCACCTACTAGAATGT+TGG + chr1_3:58363235-58363254 None:intergenic 40.0%
!! ATTCTAGTAGGTGCTGTTGT+TGG - chr1_3:58363237-58363256 Msa0128570:intron 40.0%
GGTGCATTAACATAAGTTGC+TGG + chr1_3:58363321-58363340 None:intergenic 40.0%
GCTTATCTTGCACACTCATT+CGG - chr1_3:58363357-58363376 Msa0128570:CDS 40.0%
GAAGGATAGGGAAAGGGAAA+GGG + chr1_3:58361234-58361253 None:intergenic 45.0%
GAAGAGGAAGGATAGGGAAA+GGG + chr1_3:58361240-58361259 None:intergenic 45.0%
GAGAAGGAAGAGGAAGGATA+GGG + chr1_3:58361246-58361265 None:intergenic 45.0%
AAGAAGGAGAAGGAAGAGGA+AGG + chr1_3:58361252-58361271 None:intergenic 45.0%
GAGAAAGAAGGAGAAGGAAG+AGG + chr1_3:58361256-58361275 None:intergenic 45.0%
AGTTGTGAGTGGCAAAGTGA+GGG + chr1_3:58361331-58361350 None:intergenic 45.0%
TAGTTGTGAGTGGCAAAGTG+AGG + chr1_3:58361332-58361351 None:intergenic 45.0%
TGCATCTCTGTAGTTGTGAG+TGG + chr1_3:58361342-58361361 None:intergenic 45.0%
AAAGACTCTGGTCTCTCTGA+TGG - chr1_3:58361437-58361456 Msa0128570:CDS 45.0%
!! GTTGGAGGGTATTATGATGC+TGG - chr1_3:58361570-58361589 Msa0128570:CDS 45.0%
GCTGGTGACAATGTCAAGTT+TGG - chr1_3:58361588-58361607 Msa0128570:CDS 45.0%
!! TGAGTTTGGTGGGTTGATGA+AGG - chr1_3:58361656-58361675 Msa0128570:CDS 45.0%
!! GAGTTTGGTGGGTTGATGAA+GGG - chr1_3:58361657-58361676 Msa0128570:CDS 45.0%
GAAGGTGGGAGATGCTAAAA+AGG - chr1_3:58361856-58361875 Msa0128570:CDS 45.0%
TTGGGAGAGACCAGAAGATA+TGG - chr1_3:58361889-58361908 Msa0128570:CDS 45.0%
! CTTGGTGTGTCCATATCTTC+TGG + chr1_3:58361902-58361921 None:intergenic 45.0%
!! CAGTTTGCTGATCAACACAG+AGG - chr1_3:58362161-58362180 Msa0128570:CDS 45.0%
TGCTCTTTAATTCCTGGAGC+TGG - chr1_3:58362660-58362679 Msa0128570:intron 45.0%
TGGGGTATATTGTGCAGAAG+AGG + chr1_3:58362688-58362707 None:intergenic 45.0%
TCTTCTGCACAATATACCCC+AGG - chr1_3:58362687-58362706 Msa0128570:intron 45.0%
TGCACAATATACCCCAGGTA+AGG - chr1_3:58362692-58362711 Msa0128570:intron 45.0%
AAGAAAGAGGGACCTTACCT+GGG + chr1_3:58362707-58362726 None:intergenic 45.0%
! CACATCCACTAGCTTCTTAC+TGG - chr1_3:58362844-58362863 Msa0128570:CDS 45.0%
AGCTACCAGTAAGAAGCTAG+TGG + chr1_3:58362852-58362871 None:intergenic 45.0%
TCACATTCTGTTGTGCGTTG+TGG - chr1_3:58362893-58362912 Msa0128570:CDS 45.0%
!! GCTAAGGTTCTGAGTCTCTT+TGG + chr1_3:58362935-58362954 None:intergenic 45.0%
CAGAACCTTAGCCAAGAAAC+AGG - chr1_3:58362943-58362962 Msa0128570:intron 45.0%
! ATGTCATACATGGTGGGGTA+TGG - chr1_3:58363090-58363109 Msa0128570:CDS 45.0%
! ATGGACCAAGGTATCCACAA+AGG - chr1_3:58363109-58363128 Msa0128570:CDS 45.0%
ATCCACAAAGGATACACCAC+AGG - chr1_3:58363121-58363140 Msa0128570:CDS 45.0%
TCCACAAAGGATACACCACA+GGG - chr1_3:58363122-58363141 Msa0128570:CDS 45.0%
GGGATCATCACTTCCTTCAA+TGG - chr1_3:58363143-58363162 Msa0128570:CDS 45.0%
GCTGAACATTGGATCTTTCC+TGG + chr1_3:58363177-58363196 None:intergenic 45.0%
GGAAAGATCCAATGTTCAGC+AGG - chr1_3:58363177-58363196 Msa0128570:CDS 45.0%
GGAAACCTATCATGCTGATC+TGG + chr1_3:58363267-58363286 None:intergenic 45.0%
TAAGCAAGTGTTCCCACAAG+TGG + chr1_3:58363342-58363361 None:intergenic 45.0%
! ACCAGCATCTCCAACTTGTT+TGG - chr1_3:58363392-58363411 Msa0128570:CDS 45.0%
! TCCAAACAAGTTGGAGATGC+TGG + chr1_3:58363396-58363415 None:intergenic 45.0%
!! GTGCCACTTTGCTCTTTGGT+TGG - chr1_3:58361168-58361187 Msa0128570:three_prime_UTR 50.0%
GGAAGGATAGGGAAAGGGAA+AGG + chr1_3:58361235-58361254 None:intergenic 50.0%
GGAAGAGGAAGGATAGGGAA+AGG + chr1_3:58361241-58361260 None:intergenic 50.0%
GGAGAAGGAAGAGGAAGGAT+AGG + chr1_3:58361247-58361266 None:intergenic 50.0%
AAGGGAGCTTCCCTGATCTT+TGG + chr1_3:58361394-58361413 None:intergenic 50.0%
TCTGCAGCAACTTCAGAACC+AGG + chr1_3:58361953-58361972 None:intergenic 50.0%
TGTCAAACTCTGCAGCTCCT+AGG + chr1_3:58362431-58362450 None:intergenic 50.0%
ATGGCCCTTGTAGTCATGGA+GGG + chr1_3:58362625-58362644 None:intergenic 50.0%
AATGGCCCTTGTAGTCATGG+AGG + chr1_3:58362626-58362645 None:intergenic 50.0%
CTGAATGGCCCTTGTAGTCA+TGG + chr1_3:58362629-58362648 None:intergenic 50.0%
AGAAAGAGGGACCTTACCTG+GGG + chr1_3:58362706-58362725 None:intergenic 50.0%
GAAGAAAGAGGGACCTTACC+TGG + chr1_3:58362708-58362727 None:intergenic 50.0%
CATTCTGTTGTGCGTTGTGG+TGG - chr1_3:58362896-58362915 Msa0128570:CDS 50.0%
CCACAAAGGATACACCACAG+GGG - chr1_3:58363123-58363142 Msa0128570:CDS 50.0%
AAGGAAGTGATGATCCCCTG+TGG + chr1_3:58363140-58363159 None:intergenic 50.0%
CACTGAACCCTGCTGAACAT+TGG + chr1_3:58363188-58363207 None:intergenic 50.0%
!! CTAGTAGGTGCTGTTGTTGG+AGG - chr1_3:58363240-58363259 Msa0128570:intron 50.0%
GAGGACCAGATCAGCATGAT+AGG - chr1_3:58363259-58363278 Msa0128570:intron 50.0%
AGTGGCACCTGCAAGACAGA+GGG + chr1_3:58361156-58361175 None:intergenic 55.0%
AAGTGGCACCTGCAAGACAG+AGG + chr1_3:58361157-58361176 None:intergenic 55.0%
!! GCAGGTGCCACTTTGCTCTT+TGG - chr1_3:58361164-58361183 Msa0128570:three_prime_UTR 55.0%
TGTGAGTGGCAAAGTGAGGG+TGG + chr1_3:58361328-58361347 None:intergenic 55.0%
CTGGTCTCTCCCAACAAGCA+TGG + chr1_3:58361883-58361902 None:intergenic 55.0%
!! AGTTGTTGTGGGGTGCTGCT+TGG - chr1_3:58362346-58362365 Msa0128570:CDS 55.0%
! ACATGGTGGGGTATGGACCA+AGG - chr1_3:58363097-58363116 Msa0128570:CDS 55.0%
CCCCTGTGGTGTATCCTTTG+TGG + chr1_3:58363126-58363145 None:intergenic 55.0%
CCTGGGTGTACAGCCATTGA+AGG + chr1_3:58363159-58363178 None:intergenic 55.0%
CCTTCAATGGCTGTACACCC+AGG - chr1_3:58363156-58363175 Msa0128570:CDS 55.0%
GCACACTCCCTCTGTCTTGC+AGG - chr1_3:58361146-58361165 Msa0128570:three_prime_UTR 60.0%
! GGAGTGGGAAGGCATGGGTA+TGG + chr1_3:58361298-58361317 None:intergenic 60.0%
! GCGATGGAGTGGGAAGGCAT+GGG + chr1_3:58361303-58361322 None:intergenic 60.0%
! CAAAGTGAGGGTGGTGGCGA+TGG + chr1_3:58361319-58361338 None:intergenic 60.0%
GAGTGGCAAAGTGAGGGTGG+TGG + chr1_3:58361325-58361344 None:intergenic 60.0%
GCAGAAGAGGATCCAGCTCC+AGG + chr1_3:58362675-58362694 None:intergenic 60.0%
GGCGATGGAGTGGGAAGGCA+TGG + chr1_3:58361304-58361323 None:intergenic 65.0%
! GTGGTGGCGATGGAGTGGGA+AGG + chr1_3:58361309-58361328 None:intergenic 65.0%
! GAGGGTGGTGGCGATGGAGT+GGG + chr1_3:58361313-58361332 None:intergenic 65.0%
! TGAGGGTGGTGGCGATGGAG+TGG + chr1_3:58361314-58361333 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 58361123 58363667 58361123 ID=Msa0128570;Name=Msa0128570
chr1_3 mRNA 58361123 58363667 58361123 ID=Msa0128570-mRNA-1;Parent=Msa0128570;Name=Msa0128570-mRNA-1;_AED=0.10;_eAED=0.10;_QI=104|1|1|1|1|1|8|278|505
chr1_3 exon 58361123 58361733 58361123 ID=Msa0128570-mRNA-1:exon:18737;Parent=Msa0128570-mRNA-1
chr1_3 exon 58361826 58361989 58361826 ID=Msa0128570-mRNA-1:exon:18736;Parent=Msa0128570-mRNA-1
chr1_3 exon 58362082 58362193 58362082 ID=Msa0128570-mRNA-1:exon:18735;Parent=Msa0128570-mRNA-1
chr1_3 exon 58362287 58362448 58362287 ID=Msa0128570-mRNA-1:exon:18734;Parent=Msa0128570-mRNA-1
chr1_3 exon 58362543 58362635 58362543 ID=Msa0128570-mRNA-1:exon:18733;Parent=Msa0128570-mRNA-1
chr1_3 exon 58362730 58362930 58362730 ID=Msa0128570-mRNA-1:exon:18732;Parent=Msa0128570-mRNA-1
chr1_3 exon 58363023 58363229 58363023 ID=Msa0128570-mRNA-1:exon:18731;Parent=Msa0128570-mRNA-1
chr1_3 exon 58363318 58363667 58363318 ID=Msa0128570-mRNA-1:exon:18730;Parent=Msa0128570-mRNA-1
chr1_3 five_prime_UTR 58363564 58363667 58363564 ID=Msa0128570-mRNA-1:five_prime_utr;Parent=Msa0128570-mRNA-1
chr1_3 CDS 58363318 58363563 58363318 ID=Msa0128570-mRNA-1:cds;Parent=Msa0128570-mRNA-1
chr1_3 CDS 58363023 58363229 58363023 ID=Msa0128570-mRNA-1:cds;Parent=Msa0128570-mRNA-1
chr1_3 CDS 58362730 58362930 58362730 ID=Msa0128570-mRNA-1:cds;Parent=Msa0128570-mRNA-1
chr1_3 CDS 58362543 58362635 58362543 ID=Msa0128570-mRNA-1:cds;Parent=Msa0128570-mRNA-1
chr1_3 CDS 58362287 58362448 58362287 ID=Msa0128570-mRNA-1:cds;Parent=Msa0128570-mRNA-1
chr1_3 CDS 58362082 58362193 58362082 ID=Msa0128570-mRNA-1:cds;Parent=Msa0128570-mRNA-1
chr1_3 CDS 58361826 58361989 58361826 ID=Msa0128570-mRNA-1:cds;Parent=Msa0128570-mRNA-1
chr1_3 CDS 58361401 58361733 58361401 ID=Msa0128570-mRNA-1:cds;Parent=Msa0128570-mRNA-1
chr1_3 three_prime_UTR 58361123 58361400 58361123 ID=Msa0128570-mRNA-1:three_prime_utr;Parent=Msa0128570-mRNA-1
Gene Sequence

>Msa0128570

ATGACCCTTTCCCTTTCCCTATCCTTCCTCTTCCTTCTCCTTCTTTCTCTCTTCTCTTCTTTCATTCTCCATACCCATGCCTTCCCACTCCATCGCCACCACCCTCACTTTGCCACTCACAACTACAGAGATGCACTCACCAAATCCATTCTCTTCTTTGAAGGCCAAAGATCAGGGAAGCTCCCTTCTAACCAGAGAATGTCTTGGAGAAAAGACTCTGGTCTCTCTGATGGCTCAGCAATGCATGTTGATTTGGTTGGAGGGTATTATGATGCTGGTGACAATGTCAAGTTTGGTTTTCCTATGGCTTTTACTACCACTATGCTTTCATGGAGTGTTATTGAGTTTGGTGGGTTGATGAAGGGTGAGTTGCCTAATGCTAGAGAAGCTATTCGTTGGGCTACTGATTATCTTCTAAAAGCTACTGCACATCCAAACACCATTTATGTTCAGGTGGGAGATGCTAAAAAGGACCATGCTTGTTGGGAGAGACCAGAAGATATGGACACACCAAGAAGTGTTTTCAAGATTGATGCAAATGCACCTGGTTCTGAAGTTGCTGCAGAAACTGCTGCAGCATTAGCAGCTGCTTCTCTTGTTTTCAGAAGAACTGATCCAACATACTCCAAAATTTTAGTGAGAAGGGCTATCAGGGTTTTTCAGTTTGCTGATCAACACAGAGGACCTTACAGCAATGTCTTGAAACCCTTTGTCTGTCCCTTTTACTGTGATTACTCTGGTTATCAGGATGAGTTGTTGTGGGGTGCTGCTTGGTTACACAAAGCTACAAAGAATCCAATGTACCTAAATTACATTCAAGTTAATGGTCAAATCCTAGGAGCTGCAGAGTTTGACAACACATTTGGTTGGGATAACAAACATGTTGGAGCAAGGATACTTCTTTCAAAGGAATTTCTAGTTCAAAGGGTAAAATCCCTCCATGACTACAAGGGCCATTCAGACAATTTCGTTTGCTCTTTAATTCCTGGAGCTGGATCCTCTTCTGCACAATATACCCCAGGTGGGCTTTTGTTCAAGATGAGTGATAGTAACATGCAGTATGTCACATCCACTAGCTTCTTACTGGTAGCTTATGCCAAATACTTGACCAAATCACATTCTGTTGTGCGTTGTGGTGGTACCATAGTAACACCAAAGAGACTCAGAACCTTAGCCAAGAAACAGGTGGATTACTTGCTAGGAGACAACCCATTGAAGATGTCATACATGGTGGGGTATGGACCAAGGTATCCACAAAGGATACACCACAGGGGATCATCACTTCCTTCAATGGCTGTACACCCAGGAAAGATCCAATGTTCAGCAGGGTTCAGTGTGATGAGTTCACAATCCCCTAATCCCAACATTCTAGTAGGTGCTGTTGTTGGAGGACCAGATCAGCATGATAGGTTTCCAGATAAACGGTCAGATTATGAGCAATCAGAGCCAGCAACTTATGTTAATGCACCACTTGTGGGAACACTTGCTTATCTTGCACACTCATTCGGTCAACTTTAG
Protein sequence

>Msa0128570

MTLSLSLSFLFLLLLSLFSSFILHTHAFPLHRHHPHFATHNYRDALTKSILFFEGQRSGKLPSNQRMSWRKDSGLSDGSAMHVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGLMKGELPNAREAIRWATDYLLKATAHPNTIYVQVGDAKKDHACWERPEDMDTPRSVFKIDANAPGSEVAAETAAALAAASLVFRRTDPTYSKILVRRAIRVFQFADQHRGPYSNVLKPFVCPFYCDYSGYQDELLWGAAWLHKATKNPMYLNYIQVNGQILGAAEFDNTFGWDNKHVGARILLSKEFLVQRVKSLHDYKGHSDNFVCSLIPGAGSSSAQYTPGGLLFKMSDSNMQYVTSTSFLLVAYAKYLTKSHSVVRCGGTIVTPKRLRTLAKKQVDYLLGDNPLKMSYMVGYGPRYPQRIHHRGSSLPSMAVHPGKIQCSAGFSVMSSQSPNPNILVGAVVGGPDQHDRFPDKRSDYEQSEPATYVNAPLVGTLAYLAHSFGQL*