Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370230 | RYR03219.1 | 77.907 | 86 | 19 | 0 | 75 | 160 | 30 | 115 | 2.79e-38 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370230 | A0A444YMY7 | 77.907 | 86 | 19 | 0 | 75 | 160 | 30 | 115 | 1.33e-38 | 139 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa1370230 | 0.824512 | 7.755641e-54 | -8.615850e-47 |
| Msa1370230 | Msa1423880 | 0.808423 | 3.119738e-50 | -8.615850e-47 |
| Msa0693380 | Msa1370230 | 0.805181 | 1.510738e-49 | -8.615850e-47 |
| Msa0157290 | Msa1370230 | 0.824411 | 8.190695e-54 | -8.615850e-47 |
| Msa1238930 | Msa1370230 | 0.805885 | 1.075527e-49 | -8.615850e-47 |
| Msa1313150 | Msa1370230 | 0.801304 | 9.592014e-49 | -8.615850e-47 |
| Msa0388960 | Msa1370230 | 0.811264 | 7.636986e-51 | -8.615850e-47 |
| Msa1070010 | Msa1370230 | 0.801498 | 8.753888e-49 | -8.615850e-47 |
| Msa1082500 | Msa1370230 | 0.805181 | 1.511081e-49 | -8.615850e-47 |
| Msa0262510 | Msa1370230 | 0.807406 | 5.133668e-50 | -8.615850e-47 |
| Msa0330340 | Msa1370230 | 0.800192 | 1.617094e-48 | -8.615850e-47 |
| Msa0350990 | Msa1370230 | 0.810340 | 1.210455e-50 | -8.615850e-47 |
| Msa0484780 | Msa1370230 | 0.803547 | 3.309841e-49 | -8.615850e-47 |
| Msa0880140 | Msa1370230 | 0.822871 | 1.878585e-53 | -8.615850e-47 |
| Msa0907070 | Msa1370230 | 0.807692 | 4.465432e-50 | -8.615850e-47 |
| Msa0909120 | Msa1370230 | 0.801132 | 1.040033e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370230 | MtrunA17_Chr3g0091791 | 97.143 | 70 | 2 | 0 | 91 | 160 | 14 | 83 | 1.01e-36 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370230 | AT1G26550.1 | 87.879 | 66 | 8 | 0 | 95 | 160 | 16 | 81 | 6.08e-29 | 104 |
Find 49 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCCCCTGGCAACTTTGCC+AGG | 0.318050 | tig0019103:-27559 | Msa1370230:intergenic |
| ACCATCTTGCAGCTTCTTGT+AGG | 0.370602 | tig0019103:-28389 | Msa1370230:intergenic |
| TGCAGACTTTGCAATTTGCC+AGG | 0.409839 | tig0019103:-27689 | Msa1370230:intergenic |
| AAACTCCTGGCAAAGTTGCC+AGG | 0.422701 | tig0019103:+27554 | Msa1370230:CDS |
| TATTGCCAGGGAACAATGCC+AGG | 0.428695 | tig0019103:+27489 | Msa1370230:intron |
| TTGGCTTGACAATGGGGATA+AGG | 0.432340 | tig0019103:+28411 | Msa1370230:CDS |
| AATACCTTTGCAAACTCTGC+TGG | 0.438727 | tig0019103:-28439 | Msa1370230:intergenic |
| ATGCCAGGGGCAAGAACTCC+TGG | 0.445634 | tig0019103:+27504 | Msa1370230:CDS |
| TGATGGTACAACACTTTGCC+AGG | 0.458827 | tig0019103:+27647 | Msa1370230:CDS |
| GACAATGCTTCCAAGGGAAA+AGG | 0.476404 | tig0019103:+28085 | Msa1370230:CDS |
| GGGAAAGCTGCTGATGGGCT+TGG | 0.479109 | tig0019103:+28115 | Msa1370230:CDS |
| TTGCCAGGAGTTCTTGCCCC+TGG | 0.479494 | tig0019103:-27507 | Msa1370230:intergenic |
| CAGGGGCAACCCCTCACAAA+AGG | 0.494719 | tig0019103:+27573 | Msa1370230:CDS |
| ATTTCAAGATGAGGGAAAGC+AGG | 0.502905 | tig0019103:+28045 | Msa1370230:intron |
| AAGATGGTTGGCTTGACAAT+GGG | 0.509183 | tig0019103:+28404 | Msa1370230:CDS |
| GAACTCCTGGCAAATTTGCC+AGG | 0.514259 | tig0019103:+27517 | Msa1370230:CDS |
| TAGCTCCTGGCAAATTTGCC+AGG | 0.519407 | tig0019103:-27522 | Msa1370230:intergenic |
| AAAGGTGGGAAAGCTGCTGA+TGG | 0.525616 | tig0019103:+28109 | Msa1370230:CDS |
| GCTTCCAAGGGAAAAGGAAA+AGG | 0.530890 | tig0019103:+28091 | Msa1370230:CDS |
| AAGTGATGACAATGCTTCCA+AGG | 0.535683 | tig0019103:+28078 | Msa1370230:CDS |
| AACTCCTGGCAAAGTTGCCA+GGG | 0.537313 | tig0019103:+27555 | Msa1370230:CDS |
| ATTTGTCAGCAAAGCTGCAA+AGG | 0.538839 | tig0019103:+27713 | Msa1370230:CDS |
| AATTTGCCAGGAGCTATGCC+AGG | 0.547193 | tig0019103:+27529 | Msa1370230:CDS |
| GAGGGAAAGCAGGCTGCAAG+TGG | 0.548879 | tig0019103:+28055 | Msa1370230:CDS |
| GCTATGCCAGGGAAAACTCC+TGG | 0.564673 | tig0019103:+27541 | Msa1370230:CDS |
| CAGACTTTGCAATTTGCCAG+GGG | 0.564734 | tig0019103:-27687 | Msa1370230:intergenic |
| GCAGACTTTGCAATTTGCCA+GGG | 0.565600 | tig0019103:-27688 | Msa1370230:intergenic |
| TCCAAGGGAAAAGGAAAAGG+TGG | 0.576313 | tig0019103:+28094 | Msa1370230:CDS |
| CAAGATGGTTGGCTTGACAA+TGG | 0.586005 | tig0019103:+28403 | Msa1370230:CDS |
| ACAAGAAGCTGCAAGATGGT+TGG | 0.586477 | tig0019103:+28392 | Msa1370230:CDS |
| GGTACTTGCTCCTATGTCAA+AGG | 0.594971 | tig0019103:+28136 | Msa1370230:CDS |
| GCCTACAAGAAGCTGCAAGA+TGG | 0.599336 | tig0019103:+28388 | Msa1370230:CDS |
| AAGAACACGACATAAATGAC+AGG | 0.607837 | tig0019103:+27355 | None:intergenic |
| AAGGTGGGAAAGCTGCTGAT+GGG | 0.609652 | tig0019103:+28110 | Msa1370230:CDS |
| ACCTTTGCAAACTCTGCTGG+AGG | 0.617263 | tig0019103:-28436 | Msa1370230:intergenic |
| GATGGTACAACACTTTGCCA+GGG | 0.618430 | tig0019103:+27648 | Msa1370230:CDS |
| TCCTCCAGCAGAGTTTGCAA+AGG | 0.623533 | tig0019103:+28435 | Msa1370230:CDS |
| GCAACCCCTCACAAAAGGTG+TGG | 0.630734 | tig0019103:+27578 | Msa1370230:CDS |
| AATGACAGGAGAAAGAAAAG+AGG | 0.633007 | tig0019103:+27369 | None:intergenic |
| CATATCTTATGTGAGAAACA+AGG | 0.634519 | tig0019103:+28352 | Msa1370230:CDS |
| AGTGATGACAATGCTTCCAA+GGG | 0.642736 | tig0019103:+28079 | Msa1370230:CDS |
| CCAAGGGAAAAGGAAAAGGT+GGG | 0.647496 | tig0019103:+28095 | Msa1370230:CDS |
| ATTGCCAGGGAACAATGCCA+GGG | 0.657435 | tig0019103:+27490 | Msa1370230:intron |
| ATGGTACAACACTTTGCCAG+GGG | 0.668243 | tig0019103:+27649 | Msa1370230:CDS |
| ATTTGCCAGGAGCTATGCCA+GGG | 0.676291 | tig0019103:+27530 | Msa1370230:CDS |
| AGATGGTTGGCTTGACAATG+GGG | 0.681394 | tig0019103:+28405 | Msa1370230:CDS |
| CAGCAGAAAAGATTCTTGTG+TGG | 0.696446 | tig0019103:+27612 | Msa1370230:CDS |
| ACTCCTGGCAAAGTTGCCAG+GGG | 0.709398 | tig0019103:+27556 | Msa1370230:CDS |
| TTGCCAGGGAACAATGCCAG+GGG | 0.724659 | tig0019103:+27491 | Msa1370230:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATAAATAATAATTATGAG+TGG | - | tig0019103:27773-27792 | Msa1370230:intergenic | 15.0% |
| !! | AAATGAAAAATGAATTAGAA+GGG | - | tig0019103:27872-27891 | Msa1370230:intergenic | 15.0% |
| !! | AAAATGAAAAATGAATTAGA+AGG | - | tig0019103:27873-27892 | Msa1370230:intergenic | 15.0% |
| !!! | ATTGATTTTAAAAAGTAAAC+AGG | + | tig0019103:28243-28262 | Msa1370230:intron | 15.0% |
| !!! | TTGATTTTAAAAAGTAAACA+GGG | + | tig0019103:28244-28263 | Msa1370230:intron | 15.0% |
| !!! | AAGGTATTTTTCATTTATTT+TGG | + | tig0019103:28454-28473 | Msa1370230:intron | 15.0% |
| !! | AGATAAATAATAATTATGAG+TGG | - | tig0019103:27773-27792 | Msa1370230:intergenic | 15.0% |
| !! | AAATGAAAAATGAATTAGAA+GGG | - | tig0019103:27872-27891 | Msa1370230:intergenic | 15.0% |
| !! | AAAATGAAAAATGAATTAGA+AGG | - | tig0019103:27873-27892 | Msa1370230:intergenic | 15.0% |
| !!! | ATTGATTTTAAAAAGTAAAC+AGG | + | tig0019103:28243-28262 | Msa1370230:intron | 15.0% |
| !!! | TTGATTTTAAAAAGTAAACA+GGG | + | tig0019103:28244-28263 | Msa1370230:intron | 15.0% |
| !!! | AAGGTATTTTTCATTTATTT+TGG | + | tig0019103:28454-28473 | Msa1370230:intron | 15.0% |
| !! | AATGAAAAATGAATTAGAAG+GGG | - | tig0019103:27871-27890 | Msa1370230:intergenic | 20.0% |
| !! | AATGAAAAATGAATTAGAAG+GGG | - | tig0019103:27871-27890 | Msa1370230:intergenic | 20.0% |
| ! | ATGAAAAATGAATTAGAAGG+GGG | - | tig0019103:27870-27889 | Msa1370230:intergenic | 25.0% |
| ! | TCCAATTAATTTCAAGATGA+GGG | + | tig0019103:28037-28056 | Msa1370230:intron | 25.0% |
| !! | ATATTTTGTACCTTTGACAT+AGG | - | tig0019103:28149-28168 | Msa1370230:intergenic | 25.0% |
| ! | CAGAAAACATATGAAGTAAA+TGG | - | tig0019103:28199-28218 | Msa1370230:intergenic | 25.0% |
| !!! | CTTTGAATTACATTGATTTC+TGG | + | tig0019103:28308-28327 | Msa1370230:intron | 25.0% |
| !!! | TATTTTGGAAGTTATACACT+AGG | + | tig0019103:28469-28488 | Msa1370230:intron | 25.0% |
| ! | ATGAAAAATGAATTAGAAGG+GGG | - | tig0019103:27870-27889 | Msa1370230:intergenic | 25.0% |
| ! | TCCAATTAATTTCAAGATGA+GGG | + | tig0019103:28037-28056 | Msa1370230:intron | 25.0% |
| !! | ATATTTTGTACCTTTGACAT+AGG | - | tig0019103:28149-28168 | Msa1370230:intergenic | 25.0% |
| ! | CAGAAAACATATGAAGTAAA+TGG | - | tig0019103:28199-28218 | Msa1370230:intergenic | 25.0% |
| !!! | CTTTGAATTACATTGATTTC+TGG | + | tig0019103:28308-28327 | Msa1370230:intron | 25.0% |
| !!! | TATTTTGGAAGTTATACACT+AGG | + | tig0019103:28469-28488 | Msa1370230:intron | 25.0% |
| AGAAAGAGATAACAAGACAA+AGG | + | tig0019103:27423-27442 | Msa1370230:intron | 30.0% | |
| GAAAGAGATAACAAGACAAA+GGG | + | tig0019103:27424-27443 | Msa1370230:intron | 30.0% | |
| ! | TTTTTCTTCTAGTGATCACA+TGG | + | tig0019103:27796-27815 | Msa1370230:intron | 30.0% |
| !! | CTTTGGTGTTATTTCAATAG+AGG | - | tig0019103:27904-27923 | Msa1370230:intergenic | 30.0% |
| ! | CTTTGTTTGATTGGTGAAAA+CGG | - | tig0019103:27974-27993 | Msa1370230:intergenic | 30.0% |
| ! | ATGGTACTACTTTGTTTGAT+TGG | - | tig0019103:27983-28002 | Msa1370230:intergenic | 30.0% |
| GTCCAATTAATTTCAAGATG+AGG | + | tig0019103:28036-28055 | Msa1370230:intron | 30.0% | |
| TCCCTCATCTTGAAATTAAT+TGG | - | tig0019103:28041-28060 | Msa1370230:intergenic | 30.0% | |
| CATATCTTATGTGAGAAACA+AGG | + | tig0019103:28352-28371 | Msa1370230:CDS | 30.0% | |
| GTAACAAATGTATAGCACTA+CGG | - | tig0019103:28512-28531 | Msa1370230:intergenic | 30.0% | |
| AGAAAGAGATAACAAGACAA+AGG | + | tig0019103:27423-27442 | Msa1370230:intron | 30.0% | |
| GAAAGAGATAACAAGACAAA+GGG | + | tig0019103:27424-27443 | Msa1370230:intron | 30.0% | |
| ! | TTTTTCTTCTAGTGATCACA+TGG | + | tig0019103:27796-27815 | Msa1370230:intron | 30.0% |
| !! | CTTTGGTGTTATTTCAATAG+AGG | - | tig0019103:27904-27923 | Msa1370230:intergenic | 30.0% |
| ! | CTTTGTTTGATTGGTGAAAA+CGG | - | tig0019103:27974-27993 | Msa1370230:intergenic | 30.0% |
| ! | ATGGTACTACTTTGTTTGAT+TGG | - | tig0019103:27983-28002 | Msa1370230:intergenic | 30.0% |
| GTCCAATTAATTTCAAGATG+AGG | + | tig0019103:28036-28055 | Msa1370230:intron | 30.0% | |
| TCCCTCATCTTGAAATTAAT+TGG | - | tig0019103:28041-28060 | Msa1370230:intergenic | 30.0% | |
| CATATCTTATGTGAGAAACA+AGG | + | tig0019103:28352-28371 | Msa1370230:CDS | 30.0% | |
| GTAACAAATGTATAGCACTA+CGG | - | tig0019103:28512-28531 | Msa1370230:intergenic | 30.0% | |
| AAGAAATCTTGCATATTGCC+AGG | + | tig0019103:27476-27495 | Msa1370230:intron | 35.0% | |
| AGAAATCTTGCATATTGCCA+GGG | + | tig0019103:27477-27496 | Msa1370230:intron | 35.0% | |
| AATGAATTAGAAGGGGGAAA+GGG | - | tig0019103:27864-27883 | Msa1370230:intergenic | 35.0% | |
| AAATGAATTAGAAGGGGGAA+AGG | - | tig0019103:27865-27884 | Msa1370230:intergenic | 35.0% | |
| TATGAAGTAAATGGACCCTA+GGG | - | tig0019103:28190-28209 | Msa1370230:intergenic | 35.0% | |
| ATATGAAGTAAATGGACCCT+AGG | - | tig0019103:28191-28210 | Msa1370230:intergenic | 35.0% | |
| AAGAAATCTTGCATATTGCC+AGG | + | tig0019103:27476-27495 | Msa1370230:intron | 35.0% | |
| AGAAATCTTGCATATTGCCA+GGG | + | tig0019103:27477-27496 | Msa1370230:intron | 35.0% | |
| AATGAATTAGAAGGGGGAAA+GGG | - | tig0019103:27864-27883 | Msa1370230:intergenic | 35.0% | |
| AAATGAATTAGAAGGGGGAA+AGG | - | tig0019103:27865-27884 | Msa1370230:intergenic | 35.0% | |
| TATGAAGTAAATGGACCCTA+GGG | - | tig0019103:28190-28209 | Msa1370230:intergenic | 35.0% | |
| ATATGAAGTAAATGGACCCT+AGG | - | tig0019103:28191-28210 | Msa1370230:intergenic | 35.0% | |
| GAGAGGAAGAAAAGTTGCAT+AGG | + | tig0019103:27400-27419 | Msa1370230:intron | 40.0% | |
| ! | TTTTGCCACACCTTTTGTGA+GGG | - | tig0019103:27586-27605 | Msa1370230:intergenic | 40.0% |
| ! | ATTTTGCCACACCTTTTGTG+AGG | - | tig0019103:27587-27606 | Msa1370230:intergenic | 40.0% |
| CAGCAGAAAAGATTCTTGTG+TGG | + | tig0019103:27612-27631 | Msa1370230:CDS | 40.0% | |
| ! | TGTGGTCAGAAAAAGCATGA+TGG | + | tig0019103:27630-27649 | Msa1370230:CDS | 40.0% |
| ATTTGTCAGCAAAGCTGCAA+AGG | + | tig0019103:27713-27732 | Msa1370230:CDS | 40.0% | |
| ATTTCAAGATGAGGGAAAGC+AGG | + | tig0019103:28045-28064 | Msa1370230:intron | 40.0% | |
| AAGTGATGACAATGCTTCCA+AGG | + | tig0019103:28078-28097 | Msa1370230:CDS | 40.0% | |
| AGTGATGACAATGCTTCCAA+GGG | + | tig0019103:28079-28098 | Msa1370230:CDS | 40.0% | |
| TCATTCTCACAAGTACCCTA+GGG | + | tig0019103:28172-28191 | Msa1370230:intron | 40.0% | |
| !! | AAGATGGTTGGCTTGACAAT+GGG | + | tig0019103:28404-28423 | Msa1370230:CDS | 40.0% |
| AATACCTTTGCAAACTCTGC+TGG | - | tig0019103:28442-28461 | Msa1370230:intergenic | 40.0% | |
| GAGAGGAAGAAAAGTTGCAT+AGG | + | tig0019103:27400-27419 | Msa1370230:intron | 40.0% | |
| ! | TTTTGCCACACCTTTTGTGA+GGG | - | tig0019103:27586-27605 | Msa1370230:intergenic | 40.0% |
| ! | ATTTTGCCACACCTTTTGTG+AGG | - | tig0019103:27587-27606 | Msa1370230:intergenic | 40.0% |
| CAGCAGAAAAGATTCTTGTG+TGG | + | tig0019103:27612-27631 | Msa1370230:CDS | 40.0% | |
| ! | TGTGGTCAGAAAAAGCATGA+TGG | + | tig0019103:27630-27649 | Msa1370230:CDS | 40.0% |
| ATTTGTCAGCAAAGCTGCAA+AGG | + | tig0019103:27713-27732 | Msa1370230:CDS | 40.0% | |
| ATTTCAAGATGAGGGAAAGC+AGG | + | tig0019103:28045-28064 | Msa1370230:intron | 40.0% | |
| AAGTGATGACAATGCTTCCA+AGG | + | tig0019103:28078-28097 | Msa1370230:CDS | 40.0% | |
| AGTGATGACAATGCTTCCAA+GGG | + | tig0019103:28079-28098 | Msa1370230:CDS | 40.0% | |
| TCATTCTCACAAGTACCCTA+GGG | + | tig0019103:28172-28191 | Msa1370230:intron | 40.0% | |
| !! | AAGATGGTTGGCTTGACAAT+GGG | + | tig0019103:28404-28423 | Msa1370230:CDS | 40.0% |
| AATACCTTTGCAAACTCTGC+TGG | - | tig0019103:28442-28461 | Msa1370230:intergenic | 40.0% | |
| ! | AGAAAGAAAAGAGGCGTGAG+TGG | + | tig0019103:27378-27397 | Msa1370230:intron | 45.0% |
| ! | TTTGCCACACCTTTTGTGAG+GGG | - | tig0019103:27585-27604 | Msa1370230:intergenic | 45.0% |
| TGATGGTACAACACTTTGCC+AGG | + | tig0019103:27647-27666 | Msa1370230:CDS | 45.0% | |
| GATGGTACAACACTTTGCCA+GGG | + | tig0019103:27648-27667 | Msa1370230:CDS | 45.0% | |
| ATGGTACAACACTTTGCCAG+GGG | + | tig0019103:27649-27668 | Msa1370230:CDS | 45.0% | |
| !! | AATTTGCCAGGGGTTTTTGG+TGG | - | tig0019103:27680-27699 | Msa1370230:intergenic | 45.0% |
| ! | TGCAATTTGCCAGGGGTTTT+TGG | - | tig0019103:27683-27702 | Msa1370230:intergenic | 45.0% |
| CAGACTTTGCAATTTGCCAG+GGG | - | tig0019103:27690-27709 | Msa1370230:intergenic | 45.0% | |
| GCAGACTTTGCAATTTGCCA+GGG | - | tig0019103:27691-27710 | Msa1370230:intergenic | 45.0% | |
| TGCAGACTTTGCAATTTGCC+AGG | - | tig0019103:27692-27711 | Msa1370230:intergenic | 45.0% | |
| TGACGAGAGAGAAAGGGATA+GGG | - | tig0019103:27837-27856 | Msa1370230:intergenic | 45.0% | |
| !! | AAAAATGAGGGTGGTGGAGT+TGG | - | tig0019103:27933-27952 | Msa1370230:intergenic | 45.0% |
| !! | CTCCACCACCCTCATTTTTA+CGG | + | tig0019103:27934-27953 | Msa1370230:intron | 45.0% |
| GAACAGCGCCGTAAAAATGA+GGG | - | tig0019103:27945-27964 | Msa1370230:intergenic | 45.0% | |
| TGATTGGTGAAAACGGCAGA+CGG | - | tig0019103:27967-27986 | Msa1370230:intergenic | 45.0% | |
| AATAGAAAGCTCTCGTCGAG+GGG | - | tig0019103:28015-28034 | Msa1370230:intergenic | 45.0% | |
| CAATAGAAAGCTCTCGTCGA+GGG | - | tig0019103:28016-28035 | Msa1370230:intergenic | 45.0% | |
| GACAATGCTTCCAAGGGAAA+AGG | + | tig0019103:28085-28104 | Msa1370230:CDS | 45.0% | |
| GCTTCCAAGGGAAAAGGAAA+AGG | + | tig0019103:28091-28110 | Msa1370230:CDS | 45.0% | |
| TCCAAGGGAAAAGGAAAAGG+TGG | + | tig0019103:28094-28113 | Msa1370230:CDS | 45.0% | |
| CCAAGGGAAAAGGAAAAGGT+GGG | + | tig0019103:28095-28114 | Msa1370230:CDS | 45.0% | |
| GGTACTTGCTCCTATGTCAA+AGG | + | tig0019103:28136-28155 | Msa1370230:CDS | 45.0% | |
| ! | CTAGGGTACTTGTGAGAATG+AGG | - | tig0019103:28173-28192 | Msa1370230:intergenic | 45.0% |
| CTCATTCTCACAAGTACCCT+AGG | + | tig0019103:28171-28190 | Msa1370230:intron | 45.0% | |
| ACCATCTTGCAGCTTCTTGT+AGG | - | tig0019103:28392-28411 | Msa1370230:intergenic | 45.0% | |
| ACAAGAAGCTGCAAGATGGT+TGG | + | tig0019103:28392-28411 | Msa1370230:CDS | 45.0% | |
| !! | CAAGATGGTTGGCTTGACAA+TGG | + | tig0019103:28403-28422 | Msa1370230:CDS | 45.0% |
| !! | AGATGGTTGGCTTGACAATG+GGG | + | tig0019103:28405-28424 | Msa1370230:CDS | 45.0% |
| ! | TTGGCTTGACAATGGGGATA+AGG | + | tig0019103:28411-28430 | Msa1370230:CDS | 45.0% |
| ! | AGAAAGAAAAGAGGCGTGAG+TGG | + | tig0019103:27378-27397 | Msa1370230:intron | 45.0% |
| ! | TTTGCCACACCTTTTGTGAG+GGG | - | tig0019103:27585-27604 | Msa1370230:intergenic | 45.0% |
| TGATGGTACAACACTTTGCC+AGG | + | tig0019103:27647-27666 | Msa1370230:CDS | 45.0% | |
| GATGGTACAACACTTTGCCA+GGG | + | tig0019103:27648-27667 | Msa1370230:CDS | 45.0% | |
| ATGGTACAACACTTTGCCAG+GGG | + | tig0019103:27649-27668 | Msa1370230:CDS | 45.0% | |
| !! | AATTTGCCAGGGGTTTTTGG+TGG | - | tig0019103:27680-27699 | Msa1370230:intergenic | 45.0% |
| ! | TGCAATTTGCCAGGGGTTTT+TGG | - | tig0019103:27683-27702 | Msa1370230:intergenic | 45.0% |
| CAGACTTTGCAATTTGCCAG+GGG | - | tig0019103:27690-27709 | Msa1370230:intergenic | 45.0% | |
| GCAGACTTTGCAATTTGCCA+GGG | - | tig0019103:27691-27710 | Msa1370230:intergenic | 45.0% | |
| TGCAGACTTTGCAATTTGCC+AGG | - | tig0019103:27692-27711 | Msa1370230:intergenic | 45.0% | |
| TGACGAGAGAGAAAGGGATA+GGG | - | tig0019103:27837-27856 | Msa1370230:intergenic | 45.0% | |
| !! | AAAAATGAGGGTGGTGGAGT+TGG | - | tig0019103:27933-27952 | Msa1370230:intergenic | 45.0% |
| !! | CTCCACCACCCTCATTTTTA+CGG | + | tig0019103:27934-27953 | Msa1370230:intron | 45.0% |
| GAACAGCGCCGTAAAAATGA+GGG | - | tig0019103:27945-27964 | Msa1370230:intergenic | 45.0% | |
| TGATTGGTGAAAACGGCAGA+CGG | - | tig0019103:27967-27986 | Msa1370230:intergenic | 45.0% | |
| AATAGAAAGCTCTCGTCGAG+GGG | - | tig0019103:28015-28034 | Msa1370230:intergenic | 45.0% | |
| CAATAGAAAGCTCTCGTCGA+GGG | - | tig0019103:28016-28035 | Msa1370230:intergenic | 45.0% | |
| GACAATGCTTCCAAGGGAAA+AGG | + | tig0019103:28085-28104 | Msa1370230:CDS | 45.0% | |
| GCTTCCAAGGGAAAAGGAAA+AGG | + | tig0019103:28091-28110 | Msa1370230:CDS | 45.0% | |
| TCCAAGGGAAAAGGAAAAGG+TGG | + | tig0019103:28094-28113 | Msa1370230:CDS | 45.0% | |
| CCAAGGGAAAAGGAAAAGGT+GGG | + | tig0019103:28095-28114 | Msa1370230:CDS | 45.0% | |
| GGTACTTGCTCCTATGTCAA+AGG | + | tig0019103:28136-28155 | Msa1370230:CDS | 45.0% | |
| ! | CTAGGGTACTTGTGAGAATG+AGG | - | tig0019103:28173-28192 | Msa1370230:intergenic | 45.0% |
| CTCATTCTCACAAGTACCCT+AGG | + | tig0019103:28171-28190 | Msa1370230:intron | 45.0% | |
| ACCATCTTGCAGCTTCTTGT+AGG | - | tig0019103:28392-28411 | Msa1370230:intergenic | 45.0% | |
| ACAAGAAGCTGCAAGATGGT+TGG | + | tig0019103:28392-28411 | Msa1370230:CDS | 45.0% | |
| !! | CAAGATGGTTGGCTTGACAA+TGG | + | tig0019103:28403-28422 | Msa1370230:CDS | 45.0% |
| !! | AGATGGTTGGCTTGACAATG+GGG | + | tig0019103:28405-28424 | Msa1370230:CDS | 45.0% |
| ! | TTGGCTTGACAATGGGGATA+AGG | + | tig0019103:28411-28430 | Msa1370230:CDS | 45.0% |
| TATTGCCAGGGAACAATGCC+AGG | + | tig0019103:27489-27508 | Msa1370230:intron | 50.0% | |
| ATTGCCAGGGAACAATGCCA+GGG | + | tig0019103:27490-27509 | Msa1370230:intron | 50.0% | |
| GAACTCCTGGCAAATTTGCC+AGG | + | tig0019103:27517-27536 | Msa1370230:CDS | 50.0% | |
| TAGCTCCTGGCAAATTTGCC+AGG | - | tig0019103:27525-27544 | Msa1370230:intergenic | 50.0% | |
| AATTTGCCAGGAGCTATGCC+AGG | + | tig0019103:27529-27548 | Msa1370230:CDS | 50.0% | |
| ATTTGCCAGGAGCTATGCCA+GGG | + | tig0019103:27530-27549 | Msa1370230:CDS | 50.0% | |
| ! | ACTTTGCCAGGAGTTTTCCC+TGG | - | tig0019103:27550-27569 | Msa1370230:intergenic | 50.0% |
| AAACTCCTGGCAAAGTTGCC+AGG | + | tig0019103:27554-27573 | Msa1370230:CDS | 50.0% | |
| AACTCCTGGCAAAGTTGCCA+GGG | + | tig0019103:27555-27574 | Msa1370230:CDS | 50.0% | |
| TATACAGCCAGCTACTCACG+TGG | - | tig0019103:27739-27758 | Msa1370230:intergenic | 50.0% | |
| GACGAGAGAGAAAGGGATAG+GGG | - | tig0019103:27836-27855 | Msa1370230:intergenic | 50.0% | |
| CTGACGAGAGAGAAAGGGAT+AGG | - | tig0019103:27838-27857 | Msa1370230:intergenic | 50.0% | |
| GGAGTCTGACGAGAGAGAAA+GGG | - | tig0019103:27843-27862 | Msa1370230:intergenic | 50.0% | |
| GGAACAGCGCCGTAAAAATG+AGG | - | tig0019103:27946-27965 | Msa1370230:intergenic | 50.0% | |
| CGTCGAGGGGATGAAGAAAA+TGG | - | tig0019103:28002-28021 | Msa1370230:intergenic | 50.0% | |
| CCAATAGAAAGCTCTCGTCG+AGG | - | tig0019103:28017-28036 | Msa1370230:intergenic | 50.0% | |
| CCTCGACGAGAGCTTTCTAT+TGG | + | tig0019103:28014-28033 | Msa1370230:intron | 50.0% | |
| ! | CCCACCTTTTCCTTTTCCCT+TGG | - | tig0019103:28098-28117 | Msa1370230:intergenic | 50.0% |
| AAAGGTGGGAAAGCTGCTGA+TGG | + | tig0019103:28109-28128 | Msa1370230:CDS | 50.0% | |
| AAGGTGGGAAAGCTGCTGAT+GGG | + | tig0019103:28110-28129 | Msa1370230:CDS | 50.0% | |
| GCCTACAAGAAGCTGCAAGA+TGG | + | tig0019103:28388-28407 | Msa1370230:CDS | 50.0% | |
| TCCTCCAGCAGAGTTTGCAA+AGG | + | tig0019103:28435-28454 | Msa1370230:CDS | 50.0% | |
| ACCTTTGCAAACTCTGCTGG+AGG | - | tig0019103:28439-28458 | Msa1370230:intergenic | 50.0% | |
| TATTGCCAGGGAACAATGCC+AGG | + | tig0019103:27489-27508 | Msa1370230:intron | 50.0% | |
| ATTGCCAGGGAACAATGCCA+GGG | + | tig0019103:27490-27509 | Msa1370230:intron | 50.0% | |
| GAACTCCTGGCAAATTTGCC+AGG | + | tig0019103:27517-27536 | Msa1370230:CDS | 50.0% | |
| TAGCTCCTGGCAAATTTGCC+AGG | - | tig0019103:27525-27544 | Msa1370230:intergenic | 50.0% | |
| AATTTGCCAGGAGCTATGCC+AGG | + | tig0019103:27529-27548 | Msa1370230:CDS | 50.0% | |
| ATTTGCCAGGAGCTATGCCA+GGG | + | tig0019103:27530-27549 | Msa1370230:CDS | 50.0% | |
| ! | ACTTTGCCAGGAGTTTTCCC+TGG | - | tig0019103:27550-27569 | Msa1370230:intergenic | 50.0% |
| AAACTCCTGGCAAAGTTGCC+AGG | + | tig0019103:27554-27573 | Msa1370230:CDS | 50.0% | |
| AACTCCTGGCAAAGTTGCCA+GGG | + | tig0019103:27555-27574 | Msa1370230:CDS | 50.0% | |
| TATACAGCCAGCTACTCACG+TGG | - | tig0019103:27739-27758 | Msa1370230:intergenic | 50.0% | |
| GACGAGAGAGAAAGGGATAG+GGG | - | tig0019103:27836-27855 | Msa1370230:intergenic | 50.0% | |
| CTGACGAGAGAGAAAGGGAT+AGG | - | tig0019103:27838-27857 | Msa1370230:intergenic | 50.0% | |
| GGAGTCTGACGAGAGAGAAA+GGG | - | tig0019103:27843-27862 | Msa1370230:intergenic | 50.0% | |
| GGAACAGCGCCGTAAAAATG+AGG | - | tig0019103:27946-27965 | Msa1370230:intergenic | 50.0% | |
| CGTCGAGGGGATGAAGAAAA+TGG | - | tig0019103:28002-28021 | Msa1370230:intergenic | 50.0% | |
| CCAATAGAAAGCTCTCGTCG+AGG | - | tig0019103:28017-28036 | Msa1370230:intergenic | 50.0% | |
| CCTCGACGAGAGCTTTCTAT+TGG | + | tig0019103:28014-28033 | Msa1370230:intron | 50.0% | |
| ! | CCCACCTTTTCCTTTTCCCT+TGG | - | tig0019103:28098-28117 | Msa1370230:intergenic | 50.0% |
| AAAGGTGGGAAAGCTGCTGA+TGG | + | tig0019103:28109-28128 | Msa1370230:CDS | 50.0% | |
| AAGGTGGGAAAGCTGCTGAT+GGG | + | tig0019103:28110-28129 | Msa1370230:CDS | 50.0% | |
| GCCTACAAGAAGCTGCAAGA+TGG | + | tig0019103:28388-28407 | Msa1370230:CDS | 50.0% | |
| TCCTCCAGCAGAGTTTGCAA+AGG | + | tig0019103:28435-28454 | Msa1370230:CDS | 50.0% | |
| ACCTTTGCAAACTCTGCTGG+AGG | - | tig0019103:28439-28458 | Msa1370230:intergenic | 50.0% | |
| ! | GAAAAGAGGCGTGAGTGGAG+AGG | + | tig0019103:27383-27402 | Msa1370230:intron | 55.0% |
| TTGCCAGGGAACAATGCCAG+GGG | + | tig0019103:27491-27510 | Msa1370230:intron | 55.0% | |
| ! | GTTTTCCCTGGCATAGCTCC+TGG | - | tig0019103:27538-27557 | Msa1370230:intergenic | 55.0% |
| GCTATGCCAGGGAAAACTCC+TGG | + | tig0019103:27541-27560 | Msa1370230:CDS | 55.0% | |
| ACTCCTGGCAAAGTTGCCAG+GGG | + | tig0019103:27556-27575 | Msa1370230:CDS | 55.0% | |
| GCAACCCCTCACAAAAGGTG+TGG | + | tig0019103:27578-27597 | Msa1370230:CDS | 55.0% | |
| !!! | GTTTTTGGTGGCACAACCCC+TGG | - | tig0019103:27668-27687 | Msa1370230:intergenic | 55.0% |
| GTTGTGCCACCAAAAACCCC+TGG | + | tig0019103:27671-27690 | Msa1370230:CDS | 55.0% | |
| GGGAGTCTGACGAGAGAGAA+AGG | - | tig0019103:27844-27863 | Msa1370230:intergenic | 55.0% | |
| !! | AATGAGGGTGGTGGAGTTGG+AGG | - | tig0019103:27930-27949 | Msa1370230:intergenic | 55.0% |
| CGCCGTAAAAATGAGGGTGG+TGG | - | tig0019103:27939-27958 | Msa1370230:intergenic | 55.0% | |
| CAGCGCCGTAAAAATGAGGG+TGG | - | tig0019103:27942-27961 | Msa1370230:intergenic | 55.0% | |
| ! | GAAAAGAGGCGTGAGTGGAG+AGG | + | tig0019103:27383-27402 | Msa1370230:intron | 55.0% |
| TTGCCAGGGAACAATGCCAG+GGG | + | tig0019103:27491-27510 | Msa1370230:intron | 55.0% | |
| ! | GTTTTCCCTGGCATAGCTCC+TGG | - | tig0019103:27538-27557 | Msa1370230:intergenic | 55.0% |
| GCTATGCCAGGGAAAACTCC+TGG | + | tig0019103:27541-27560 | Msa1370230:CDS | 55.0% | |
| ACTCCTGGCAAAGTTGCCAG+GGG | + | tig0019103:27556-27575 | Msa1370230:CDS | 55.0% | |
| GCAACCCCTCACAAAAGGTG+TGG | + | tig0019103:27578-27597 | Msa1370230:CDS | 55.0% | |
| !!! | GTTTTTGGTGGCACAACCCC+TGG | - | tig0019103:27668-27687 | Msa1370230:intergenic | 55.0% |
| GTTGTGCCACCAAAAACCCC+TGG | + | tig0019103:27671-27690 | Msa1370230:CDS | 55.0% | |
| GGGAGTCTGACGAGAGAGAA+AGG | - | tig0019103:27844-27863 | Msa1370230:intergenic | 55.0% | |
| !! | AATGAGGGTGGTGGAGTTGG+AGG | - | tig0019103:27930-27949 | Msa1370230:intergenic | 55.0% |
| CGCCGTAAAAATGAGGGTGG+TGG | - | tig0019103:27939-27958 | Msa1370230:intergenic | 55.0% | |
| CAGCGCCGTAAAAATGAGGG+TGG | - | tig0019103:27942-27961 | Msa1370230:intergenic | 55.0% | |
| TTGCCCCTGGCATTGTTCCC+TGG | - | tig0019103:27497-27516 | Msa1370230:intergenic | 60.0% | |
| ATGCCAGGGGCAAGAACTCC+TGG | + | tig0019103:27504-27523 | Msa1370230:CDS | 60.0% | |
| TTGCCAGGAGTTCTTGCCCC+TGG | - | tig0019103:27510-27529 | Msa1370230:intergenic | 60.0% | |
| TTGCCCCTGGCAACTTTGCC+AGG | - | tig0019103:27562-27581 | Msa1370230:intergenic | 60.0% | |
| ! | CTTTTGTGAGGGGTTGCCCC+TGG | - | tig0019103:27575-27594 | Msa1370230:intergenic | 60.0% |
| CAGGGGCAACCCCTCACAAA+AGG | + | tig0019103:27573-27592 | Msa1370230:CDS | 60.0% | |
| GCAAAGGCCACGTGAGTAGC+TGG | + | tig0019103:27729-27748 | Msa1370230:intron | 60.0% | |
| GGTGGAGTTGGAGGAGGCTT+TGG | - | tig0019103:27921-27940 | Msa1370230:intergenic | 60.0% | |
| GAGGGAAAGCAGGCTGCAAG+TGG | + | tig0019103:28055-28074 | Msa1370230:CDS | 60.0% | |
| !! | GGGAAAGCTGCTGATGGGCT+TGG | + | tig0019103:28115-28134 | Msa1370230:CDS | 60.0% |
| TTGCCCCTGGCATTGTTCCC+TGG | - | tig0019103:27497-27516 | Msa1370230:intergenic | 60.0% | |
| ATGCCAGGGGCAAGAACTCC+TGG | + | tig0019103:27504-27523 | Msa1370230:CDS | 60.0% | |
| TTGCCAGGAGTTCTTGCCCC+TGG | - | tig0019103:27510-27529 | Msa1370230:intergenic | 60.0% | |
| TTGCCCCTGGCAACTTTGCC+AGG | - | tig0019103:27562-27581 | Msa1370230:intergenic | 60.0% | |
| ! | CTTTTGTGAGGGGTTGCCCC+TGG | - | tig0019103:27575-27594 | Msa1370230:intergenic | 60.0% |
| CAGGGGCAACCCCTCACAAA+AGG | + | tig0019103:27573-27592 | Msa1370230:CDS | 60.0% | |
| GCAAAGGCCACGTGAGTAGC+TGG | + | tig0019103:27729-27748 | Msa1370230:intron | 60.0% | |
| GGTGGAGTTGGAGGAGGCTT+TGG | - | tig0019103:27921-27940 | Msa1370230:intergenic | 60.0% | |
| GAGGGAAAGCAGGCTGCAAG+TGG | + | tig0019103:28055-28074 | Msa1370230:CDS | 60.0% | |
| !! | GGGAAAGCTGCTGATGGGCT+TGG | + | tig0019103:28115-28134 | Msa1370230:CDS | 60.0% |
| !! | GAGGGTGGTGGAGTTGGAGG+AGG | - | tig0019103:27927-27946 | Msa1370230:intergenic | 65.0% |
| !! | GAGGGTGGTGGAGTTGGAGG+AGG | - | tig0019103:27927-27946 | Msa1370230:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019103 | gene | 27370 | 28560 | 27370 | ID=Msa1370230;Name=Msa1370230 |
| tig0019103 | mRNA | 27370 | 28560 | 27370 | ID=Msa1370230-mRNA-1;Parent=Msa1370230;Name=Msa1370230-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|0|0|0.4|1|1|5|0|162 |
| tig0019103 | exon | 27370 | 27392 | 27370 | ID=Msa1370230-mRNA-1:exon:1580;Parent=Msa1370230-mRNA-1 |
| tig0019103 | exon | 27498 | 27739 | 27498 | ID=Msa1370230-mRNA-1:exon:1581;Parent=Msa1370230-mRNA-1 |
| tig0019103 | exon | 28053 | 28157 | 28053 | ID=Msa1370230-mRNA-1:exon:1582;Parent=Msa1370230-mRNA-1 |
| tig0019103 | exon | 28347 | 28456 | 28347 | ID=Msa1370230-mRNA-1:exon:1583;Parent=Msa1370230-mRNA-1 |
| tig0019103 | exon | 28552 | 28560 | 28552 | ID=Msa1370230-mRNA-1:exon:1584;Parent=Msa1370230-mRNA-1 |
| tig0019103 | CDS | 27370 | 27392 | 27370 | ID=Msa1370230-mRNA-1:cds;Parent=Msa1370230-mRNA-1 |
| tig0019103 | CDS | 27498 | 27739 | 27498 | ID=Msa1370230-mRNA-1:cds;Parent=Msa1370230-mRNA-1 |
| tig0019103 | CDS | 28053 | 28157 | 28053 | ID=Msa1370230-mRNA-1:cds;Parent=Msa1370230-mRNA-1 |
| tig0019103 | CDS | 28347 | 28456 | 28347 | ID=Msa1370230-mRNA-1:cds;Parent=Msa1370230-mRNA-1 |
| tig0019103 | CDS | 28552 | 28560 | 28552 | ID=Msa1370230-mRNA-1:cds;Parent=Msa1370230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
