Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377290 | AFK45542.1 | 76.279 | 215 | 0 | 2 | 4 | 167 | 24 | 238 | 1.05e-103 | 315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377290 | I3SZ50 | 76.279 | 215 | 0 | 2 | 4 | 167 | 24 | 238 | 5.04e-104 | 315 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002680 | Msa1377290 | 0.800567 | 1.356798e-48 | -8.615850e-47 |
| Msa0022750 | Msa1377290 | -0.820811 | 5.631382e-53 | -8.615850e-47 |
| Msa0039250 | Msa1377290 | 0.819809 | 9.555122e-53 | -8.615850e-47 |
| Msa0116790 | Msa1377290 | 0.815007 | 1.152525e-51 | -8.615850e-47 |
| Msa1354200 | Msa1377290 | 0.801769 | 7.702136e-49 | -8.615850e-47 |
| Msa1377290 | Msa1420250 | 0.831316 | 1.788648e-55 | -8.615850e-47 |
| Msa1377290 | Msa1466590 | 0.802704 | 4.944447e-49 | -8.615850e-47 |
| Msa1377290 | Msa1467000 | 0.821199 | 4.584581e-53 | -8.615850e-47 |
| Msa0689760 | Msa1377290 | 0.834815 | 2.409194e-56 | -8.615850e-47 |
| Msa0716860 | Msa1377290 | 0.828567 | 8.369707e-55 | -8.615850e-47 |
| Msa0757800 | Msa1377290 | 0.835327 | 1.790086e-56 | -8.615850e-47 |
| Msa0133720 | Msa1377290 | 0.819254 | 1.279420e-52 | -8.615850e-47 |
| Msa0133820 | Msa1377290 | 0.828256 | 9.948282e-55 | -8.615850e-47 |
| Msa0230370 | Msa1377290 | 0.823639 | 1.243152e-53 | -8.615850e-47 |
| Msa1282500 | Msa1377290 | 0.818710 | 1.700281e-52 | -8.615850e-47 |
| Msa0996020 | Msa1377290 | 0.800446 | 1.436041e-48 | -8.615850e-47 |
| Msa1010070 | Msa1377290 | 0.810313 | 1.226306e-50 | -8.615850e-47 |
| Msa0312530 | Msa1377290 | 0.808964 | 2.390866e-50 | -8.615850e-47 |
| Msa0336390 | Msa1377290 | 0.805686 | 1.183994e-49 | -8.615850e-47 |
| Msa0576680 | Msa1377290 | 0.801394 | 9.190667e-49 | -8.615850e-47 |
| Msa0929950 | Msa1377290 | 0.803251 | 3.811955e-49 | -8.615850e-47 |
| Msa0937430 | Msa1377290 | 0.804826 | 1.793056e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377290 | MtrunA17_Chr2g0322931 | 76.279 | 215 | 0 | 2 | 4 | 167 | 24 | 238 | 1.01e-107 | 315 |
| Msa1377290 | MtrunA17_Chr7g0246941 | 52.764 | 199 | 41 | 3 | 19 | 166 | 6 | 202 | 1.38e-62 | 198 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1377290 | AT5G35730.1 | 55.224 | 201 | 39 | 2 | 18 | 167 | 29 | 229 | 3.55e-70 | 219 |
| Msa1377290 | AT2G32295.1 | 42.105 | 209 | 70 | 2 | 9 | 166 | 16 | 224 | 1.47e-49 | 166 |
| Msa1377290 | AT2G32295.2 | 42.105 | 209 | 70 | 2 | 9 | 166 | 16 | 224 | 1.47e-49 | 166 |
Find 57 sgRNAs with CRISPR-Local
Find 319 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTTTGATGGTTTGGCTTT+GGG | 0.137994 | tig0019874:+157155 | Msa1377290:intron |
| GGCTTTGGGGAATCAACTTA+TGG | 0.204129 | tig0019874:+157169 | Msa1377290:CDS |
| GTCCCTGACGTCAACTTATT+GGG | 0.249479 | tig0019874:+155834 | Msa1377290:five_prime_UTR |
| AGGCTTTGATGGTTTGGCTT+TGG | 0.261848 | tig0019874:+157154 | Msa1377290:intron |
| AAGATTGTTAGAAGAAGAAT+TGG | 0.290014 | tig0019874:+155555 | Msa1377290:intron |
| AGTCCTCACTTACGCAAATC+TGG | 0.294732 | tig0019874:+155647 | Msa1377290:five_prime_UTR |
| TGTTTCAGGCTTTGATGGTT+TGG | 0.303655 | tig0019874:+157148 | Msa1377290:intron |
| AGTCCCTGACGTCAACTTAT+TGG | 0.319936 | tig0019874:+155833 | Msa1377290:five_prime_UTR |
| AGACCTGTTGTTTATGATCT+TGG | 0.327836 | tig0019874:+155674 | Msa1377290:five_prime_UTR |
| ATCTGACTCACGGAGAAATA+TGG | 0.328875 | tig0019874:+157247 | Msa1377290:CDS |
| CGATTCAATTCAATTCCATT+AGG | 0.337747 | tig0019874:+155408 | Msa1377290:five_prime_UTR |
| TACATTTATCTTTATTCTCA+TGG | 0.364906 | tig0019874:+158927 | Msa1377290:CDS |
| GCTTTGGGGAATCAACTTAT+GGG | 0.366021 | tig0019874:+157170 | Msa1377290:CDS |
| GCAACGCCAATGAATGGTTC+TGG | 0.379449 | tig0019874:+156118 | Msa1377290:CDS |
| GATGAATTTGAGGAGGAAAA+TGG | 0.416332 | tig0019874:+156043 | Msa1377290:intron |
| ATCATTCCAGAACCATTCAT+TGG | 0.430497 | tig0019874:-156124 | None:intergenic |
| ATTGGGCCGCGTATGACGTC+AGG | 0.435651 | tig0019874:+155875 | Msa1377290:exon |
| GCTTTGATGGTTTGGCTTTG+GGG | 0.447539 | tig0019874:+157156 | Msa1377290:CDS |
| AGCCTTTACGCAATGCAGTA+TGG | 0.447631 | tig0019874:-155287 | None:intergenic |
| TTGAATCTCCACAACAAAAC+AGG | 0.451024 | tig0019874:-156154 | None:intergenic |
| GGCCCCAATAAGTTGACGTC+AGG | 0.453289 | tig0019874:-155837 | None:intergenic |
| AGTTTATTGCATTCTGTTGA+GGG | 0.470036 | tig0019874:+156076 | Msa1377290:CDS |
| ACGGAAAATTGCAGATTGGA+TGG | 0.485929 | tig0019874:+156898 | Msa1377290:intron |
| GTACCAAGATCATAAACAAC+AGG | 0.488726 | tig0019874:-155677 | None:intergenic |
| ATAAATGTATGCTGTCATAC+TGG | 0.496619 | tig0019874:-158913 | None:intergenic |
| TCTGTTTGTAGATGAATTTG+AGG | 0.497881 | tig0019874:+156033 | Msa1377290:intron |
| GTATCAAATGCGTTGAAAAG+AGG | 0.508411 | tig0019874:-155312 | None:intergenic |
| CGGAAAATTGCAGATTGGAT+GGG | 0.510376 | tig0019874:+156899 | Msa1377290:intron |
| AAACTAACCGCGAGAAGAAG+AGG | 0.514540 | tig0019874:-156990 | None:intergenic |
| CGTAAGTGAGGACTATTAGC+AGG | 0.515958 | tig0019874:-155638 | None:intergenic |
| AGTGTGGATCTGTGCGGAAA+AGG | 0.526489 | tig0019874:-155370 | None:intergenic |
| GTCCTCACTTACGCAAATCT+GGG | 0.527006 | tig0019874:+155648 | Msa1377290:five_prime_UTR |
| AAGTTTATTGCATTCTGTTG+AGG | 0.529591 | tig0019874:+156075 | Msa1377290:CDS |
| GGTGGAGCAACGCCAATGAA+TGG | 0.532251 | tig0019874:+156112 | Msa1377290:CDS |
| GAGAATGAGTGCAGACAAGC+GGG | 0.540598 | tig0019874:+156932 | Msa1377290:CDS |
| GTCCATACTGCATTGCGTAA+AGG | 0.544371 | tig0019874:+155285 | Msa1377290:five_prime_UTR |
| CTGTTGAGGGAAATGATTCG+AGG | 0.548067 | tig0019874:+156089 | Msa1377290:CDS |
| GATCAAAATCATCTGACTCA+CGG | 0.582821 | tig0019874:+157237 | Msa1377290:CDS |
| GAGGGAAATGATTCGAGGGG+TGG | 0.584432 | tig0019874:+156094 | Msa1377290:CDS |
| TGTTGAGGGAAATGATTCGA+GGG | 0.587619 | tig0019874:+156090 | Msa1377290:CDS |
| CTCCCAGATTTGCGTAAGTG+AGG | 0.595380 | tig0019874:-155650 | None:intergenic |
| GTTTGTAGATGAATTTGAGG+AGG | 0.608225 | tig0019874:+156036 | Msa1377290:intron |
| TCCCTGACGTCAACTTATTG+GGG | 0.610333 | tig0019874:+155835 | Msa1377290:five_prime_UTR |
| CCCAATAAAAGCATGCCACG+TGG | 0.615028 | tig0019874:-155858 | None:intergenic |
| CTCCACAACAAAACAGGTGA+GGG | 0.616404 | tig0019874:-156148 | None:intergenic |
| ATGTATGCTGTCATACTGGT+TGG | 0.627781 | tig0019874:-158909 | None:intergenic |
| TGAGAATGAGTGCAGACAAG+CGG | 0.632813 | tig0019874:+156931 | Msa1377290:CDS |
| GCCCCAATAAGTTGACGTCA+GGG | 0.636362 | tig0019874:-155836 | None:intergenic |
| TCTCCACAACAAAACAGGTG+AGG | 0.651186 | tig0019874:-156149 | None:intergenic |
| CTAGTACCTGACGTCATACG+CGG | 0.652382 | tig0019874:-155881 | None:intergenic |
| AACAATGATTGTCATCCACA+TGG | 0.660707 | tig0019874:-158886 | None:intergenic |
| GACTCACGGAGAAATATGGA+AGG | 0.669438 | tig0019874:+157251 | Msa1377290:CDS |
| GTTGAGGGAAATGATTCGAG+GGG | 0.674364 | tig0019874:+156091 | Msa1377290:CDS |
| GATTAGCGTAGCGATGAGTG+TGG | 0.677297 | tig0019874:-155386 | None:intergenic |
| GATTATTGCAGTGTGCCATG+TGG | 0.682636 | tig0019874:+158871 | Msa1377290:intron |
| GTCAACTTATTGGGGCCACG+TGG | 0.685671 | tig0019874:+155843 | Msa1377290:five_prime_UTR |
| GCGATGAGTGTGGATCTGTG+CGG | 0.875526 | tig0019874:-155376 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATAATTATACTAGTTTT+TGG | + | tig0019874:155981-156000 | Msa1377290:intron | 10.0% |
| !! | ATAAAATAAAATACAATAGA+AGG | - | tig0019874:156685-156704 | None:intergenic | 10.0% |
| !! | AATTATTACTTATTAGAAAA+TGG | - | tig0019874:158802-158821 | None:intergenic | 10.0% |
| !!! | TTTTCTATTTTTATTAAAAC+AGG | + | tig0019874:159867-159886 | Msa1377290:intron | 10.0% |
| !! | ATAAATGATAATTGAAAATG+TGG | - | tig0019874:155460-155479 | None:intergenic | 15.0% |
| !! | GTTTAATTAATAGAGTTTAT+TGG | + | tig0019874:156005-156024 | Msa1377290:intron | 15.0% |
| !! | TTGGTTTATATTAAAACAAA+TGG | - | tig0019874:157634-157653 | None:intergenic | 15.0% |
| !! | AGGATAGATTTAAAAATTAT+AGG | + | tig0019874:158191-158210 | Msa1377290:intron | 15.0% |
| !! | AAAAATTATAGGATATAACA+TGG | + | tig0019874:158202-158221 | Msa1377290:intron | 15.0% |
| !! | TTCAATCTTATATGACATAA+CGG | + | tig0019874:156879-156898 | Msa1377290:intron | 20.0% |
| !! | AATAAAGAACAAAACAATCA+TGG | + | tig0019874:157514-157533 | Msa1377290:intron | 20.0% |
| !!! | TCTTTCTTAATAGTTTTTCT+TGG | - | tig0019874:157966-157985 | None:intergenic | 20.0% |
| !!! | AAATGAGTTGAATAGAAATA+TGG | + | tig0019874:157995-158014 | Msa1377290:intron | 20.0% |
| !! | TGGTATTTGATAGAAAATTA+TGG | + | tig0019874:158015-158034 | Msa1377290:intron | 20.0% |
| !!! | GAACAAATATTTTACAGATT+AGG | + | tig0019874:158310-158329 | Msa1377290:intron | 20.0% |
| !! | GTATGAAAGTTCAAAAAAAT+TGG | + | tig0019874:158401-158420 | Msa1377290:intron | 20.0% |
| !! | AATTTAGCGACATAATAATA+GGG | - | tig0019874:158702-158721 | None:intergenic | 20.0% |
| !! | AAAAGAATTAGAGAAATGAA+TGG | - | tig0019874:158758-158777 | None:intergenic | 20.0% |
| !! | TACATTTATCTTTATTCTCA+TGG | + | tig0019874:158927-158946 | Msa1377290:CDS | 20.0% |
| !! | CCAATAATAAGATATATAGA+AGG | - | tig0019874:159113-159132 | None:intergenic | 20.0% |
| !! | CCTTCTATATATCTTATTAT+TGG | + | tig0019874:159110-159129 | Msa1377290:intron | 20.0% |
| !! | AAAAATAGAAGATATCAAAG+GGG | - | tig0019874:159207-159226 | None:intergenic | 20.0% |
| !! | GAAAAATAGAAGATATCAAA+GGG | - | tig0019874:159208-159227 | None:intergenic | 20.0% |
| !! | TGAAAAATAGAAGATATCAA+AGG | - | tig0019874:159209-159228 | None:intergenic | 20.0% |
| !! | TTTAACACTGCAATAATTAT+GGG | - | tig0019874:159550-159569 | None:intergenic | 20.0% |
| !!! | TTTTAACACTGCAATAATTA+TGG | - | tig0019874:159551-159570 | None:intergenic | 20.0% |
| !!! | CTTTATTTATTCAGATTCTT+AGG | + | tig0019874:159740-159759 | Msa1377290:intron | 20.0% |
| ! | AAGATTGTTAGAAGAAGAAT+TGG | + | tig0019874:155555-155574 | Msa1377290:intron | 25.0% |
| ! | AAAGAAGAACACTATATTTG+CGG | - | tig0019874:155759-155778 | None:intergenic | 25.0% |
| !!! | CTCTTTTTAGTTTTTGTGTT+TGG | + | tig0019874:155788-155807 | Msa1377290:intron | 25.0% |
| ! | TGCTTAATATTTGATTGCAT+TGG | + | tig0019874:156513-156532 | Msa1377290:intron | 25.0% |
| ! | AGTTATATCATCTTTAGACT+TGG | + | tig0019874:156591-156610 | Msa1377290:intron | 25.0% |
| ! | ATTAATTGAAGTGAATGTCT+AGG | + | tig0019874:156720-156739 | Msa1377290:intron | 25.0% |
| ! | CAATTTCAAACCACATTATA+GGG | - | tig0019874:156822-156841 | None:intergenic | 25.0% |
| ! | TCAATTTCAAACCACATTAT+AGG | - | tig0019874:156823-156842 | None:intergenic | 25.0% |
| !! | GAGTTTGAGTTAATATCTTA+AGG | + | tig0019874:156841-156860 | Msa1377290:intron | 25.0% |
| !!! | TCATCTCATTTTTATGTTTC+AGG | + | tig0019874:157134-157153 | Msa1377290:intron | 25.0% |
| ! | ACCATTAGGGAAATTAAAAA+GGG | + | tig0019874:157332-157351 | Msa1377290:intron | 25.0% |
| ! | CCAAATATTGGAACAAAAAA+TGG | - | tig0019874:157390-157409 | None:intergenic | 25.0% |
| !!! | CCATTTTTTGTTCCAATATT+TGG | + | tig0019874:157387-157406 | Msa1377290:intron | 25.0% |
| ! | TTGTTGAGAAAACCAAATAT+TGG | - | tig0019874:157402-157421 | None:intergenic | 25.0% |
| ! | AGTTCCTATAGTAAAAAAGA+TGG | + | tig0019874:157830-157849 | Msa1377290:intron | 25.0% |
| !!! | TCAACCATCTTTTTTACTAT+AGG | - | tig0019874:157837-157856 | None:intergenic | 25.0% |
| ! | TAAAAAAGATGGTTGAAACT+AGG | + | tig0019874:157841-157860 | Msa1377290:intron | 25.0% |
| !!! | GACTTATGGATTTTTTAGTT+AGG | + | tig0019874:157892-157911 | Msa1377290:intron | 25.0% |
| ! | TAATGATATACGATATGACA+TGG | + | tig0019874:158159-158178 | Msa1377290:intron | 25.0% |
| ! | TATCATTTATCTAACTGTTG+TGG | + | tig0019874:158361-158380 | Msa1377290:intron | 25.0% |
| !!! | TGTGGTATTTTTATATGTAG+TGG | + | tig0019874:158379-158398 | Msa1377290:intron | 25.0% |
| ! | TCTATGATATTCTAGTCAAT+AGG | + | tig0019874:158590-158609 | Msa1377290:intron | 25.0% |
| ! | CAATTTAGCGACATAATAAT+AGG | - | tig0019874:158703-158722 | None:intergenic | 25.0% |
| ! | CTATTATTATGTCGCTAAAT+TGG | + | tig0019874:158701-158720 | Msa1377290:intron | 25.0% |
| !! | ATCAACACGGAAAAATTTTA+GGG | - | tig0019874:158854-158873 | None:intergenic | 25.0% |
| !! | AATCAACACGGAAAAATTTT+AGG | - | tig0019874:158855-158874 | None:intergenic | 25.0% |
| ! | CATCTAGATATTTCTTCTTA+AGG | + | tig0019874:159227-159246 | Msa1377290:intron | 25.0% |
| ! | ATATTTATGCTATGCATGAA+AGG | + | tig0019874:159371-159390 | Msa1377290:intron | 25.0% |
| ! | TATTATTATGAAGCTGAACA+CGG | - | tig0019874:159458-159477 | None:intergenic | 25.0% |
| ! | TTCAAAGAAAACTCATAGAA+AGG | - | tig0019874:159523-159542 | None:intergenic | 25.0% |
| ! | AATATCAGCCAAGAAAAAAT+CGG | - | tig0019874:159905-159924 | None:intergenic | 25.0% |
| CGATTCAATTCAATTCCATT+AGG | + | tig0019874:155408-155427 | Msa1377290:five_prime_UTR | 30.0% | |
| !!! | TCGTTTTTTGCTTTTAGTCA+CGG | - | tig0019874:155938-155957 | None:intergenic | 30.0% |
| TCTGTTTGTAGATGAATTTG+AGG | + | tig0019874:156033-156052 | Msa1377290:intron | 30.0% | |
| AAGTTTATTGCATTCTGTTG+AGG | + | tig0019874:156075-156094 | Msa1377290:CDS | 30.0% | |
| AGTTTATTGCATTCTGTTGA+GGG | + | tig0019874:156076-156095 | Msa1377290:CDS | 30.0% | |
| AAGTTGTCACTGTTGTTAAA+TGG | + | tig0019874:156316-156335 | Msa1377290:intron | 30.0% | |
| ! | GTGTTTATATGGAGGATTTT+TGG | + | tig0019874:156446-156465 | Msa1377290:intron | 30.0% |
| ATGAGATGCAATATGACTTT+AGG | + | tig0019874:156630-156649 | Msa1377290:intron | 30.0% | |
| !! | AGGTACTGTTGTTTCTTATT+TGG | + | tig0019874:156740-156759 | Msa1377290:intron | 30.0% |
| !! | GGTACTGTTGTTTCTTATTT+GGG | + | tig0019874:156741-156760 | Msa1377290:intron | 30.0% |
| !! | GTACTGTTGTTTCTTATTTG+GGG | + | tig0019874:156742-156761 | Msa1377290:intron | 30.0% |
| ATGATGAGAAATGTAGTAGA+GGG | - | tig0019874:156798-156817 | None:intergenic | 30.0% | |
| AATGATGAGAAATGTAGTAG+AGG | - | tig0019874:156799-156818 | None:intergenic | 30.0% | |
| ATATCTTAAGGATTTCACGA+TGG | + | tig0019874:156853-156872 | Msa1377290:intron | 30.0% | |
| CACATAGAAACTGAAATAGT+GGG | - | tig0019874:157021-157040 | None:intergenic | 30.0% | |
| CACTATTTCAGTTTCTATGT+GGG | + | tig0019874:157020-157039 | Msa1377290:intron | 30.0% | |
| !! | TTTTATGTTTCAGGCTTTGA+TGG | + | tig0019874:157143-157162 | Msa1377290:intron | 30.0% |
| GACCATTAGGGAAATTAAAA+AGG | + | tig0019874:157331-157350 | Msa1377290:intron | 30.0% | |
| !!! | TCCCTTTTTAATTTCCCTAA+TGG | - | tig0019874:157336-157355 | None:intergenic | 30.0% |
| GATGCTAACTTCAAATTTCT+AGG | - | tig0019874:157368-157387 | None:intergenic | 30.0% | |
| TACATCAAATATGCATTGAG+TGG | + | tig0019874:157465-157484 | Msa1377290:intron | 30.0% | |
| ATCAGTCTATGTACTAAATG+TGG | + | tig0019874:157692-157711 | Msa1377290:intron | 30.0% | |
| TGTAATTCAACCCTCAAAAT+TGG | + | tig0019874:158226-158245 | Msa1377290:intron | 30.0% | |
| GTAATTCAACCCTCAAAATT+GGG | + | tig0019874:158227-158246 | Msa1377290:intron | 30.0% | |
| ATATCATAGAAATCAGCCTA+TGG | - | tig0019874:158580-158599 | None:intergenic | 30.0% | |
| !!! | GATTTTTTATCCAGGAAAGT+GGG | - | tig0019874:158654-158673 | None:intergenic | 30.0% |
| AGAATTAGAGAAATGAATGG+CGG | - | tig0019874:158755-158774 | None:intergenic | 30.0% | |
| ! | TCAACACGGAAAAATTTTAG+GGG | - | tig0019874:158853-158872 | None:intergenic | 30.0% |
| ATAAATGTATGCTGTCATAC+TGG | - | tig0019874:158916-158935 | None:intergenic | 30.0% | |
| ACTGATTACATTTGTTTGCT+TGG | + | tig0019874:158997-159016 | Msa1377290:intron | 30.0% | |
| AAAGAAAACTTGCCTGTAAT+GGG | - | tig0019874:159273-159292 | None:intergenic | 30.0% | |
| AAAAGAAAACTTGCCTGTAA+TGG | - | tig0019874:159274-159293 | None:intergenic | 30.0% | |
| ! | CAGGCAAGTTTTCTTTTATT+TGG | + | tig0019874:159277-159296 | Msa1377290:intron | 30.0% |
| GAAAAACAAGGGTAAGATTT+AGG | - | tig0019874:159780-159799 | None:intergenic | 30.0% | |
| !!! | GGCTGATATTTTAACTTCAA+TGG | + | tig0019874:159915-159934 | Msa1377290:CDS | 30.0% |
| GTATCAAATGCGTTGAAAAG+AGG | - | tig0019874:155315-155334 | None:intergenic | 35.0% | |
| TGGGAGAAAGATAAACCTAA+TGG | - | tig0019874:155426-155445 | None:intergenic | 35.0% | |
| AAATGTGGATCGAGAAAAGT+GGG | - | tig0019874:155445-155464 | None:intergenic | 35.0% | |
| AAAATGTGGATCGAGAAAAG+TGG | - | tig0019874:155446-155465 | None:intergenic | 35.0% | |
| ! | AGACCTGTTGTTTATGATCT+TGG | + | tig0019874:155674-155693 | Msa1377290:five_prime_UTR | 35.0% |
| GTACCAAGATCATAAACAAC+AGG | - | tig0019874:155680-155699 | None:intergenic | 35.0% | |
| GTTTGTAGATGAATTTGAGG+AGG | + | tig0019874:156036-156055 | Msa1377290:intron | 35.0% | |
| GATGAATTTGAGGAGGAAAA+TGG | + | tig0019874:156043-156062 | Msa1377290:intron | 35.0% | |
| ATCATTCCAGAACCATTCAT+TGG | - | tig0019874:156127-156146 | None:intergenic | 35.0% | |
| TTGAATCTCCACAACAAAAC+AGG | - | tig0019874:156157-156176 | None:intergenic | 35.0% | |
| !! | TGTTTTGTTGTGGAGATTCA+AGG | + | tig0019874:156156-156175 | Msa1377290:CDS | 35.0% |
| ACAACAGTGACAACTTACAA+AGG | - | tig0019874:156312-156331 | None:intergenic | 35.0% | |
| ATCTCTTCACAAAACACGTA+TGG | - | tig0019874:156393-156412 | None:intergenic | 35.0% | |
| TCCATATAAACACGCCAATT+TGG | - | tig0019874:156439-156458 | None:intergenic | 35.0% | |
| AAATTGGCGTGTTTATATGG+AGG | + | tig0019874:156438-156457 | Msa1377290:intron | 35.0% | |
| ATCAAATATTAAGCAGCTCC+CGG | - | tig0019874:156508-156527 | None:intergenic | 35.0% | |
| TGGATAGAAAAATCTAGCGT+TGG | + | tig0019874:156533-156552 | Msa1377290:intron | 35.0% | |
| TCTCATCATTCCCTATAATG+TGG | + | tig0019874:156809-156828 | Msa1377290:intron | 35.0% | |
| ! | CATAACGGAAAATTGCAGAT+TGG | + | tig0019874:156894-156913 | Msa1377290:intron | 35.0% |
| ! | TTTTAATCCTCTTCTTCTCG+CGG | + | tig0019874:156983-157002 | Msa1377290:CDS | 35.0% |
| CCACATAGAAACTGAAATAG+TGG | - | tig0019874:157022-157041 | None:intergenic | 35.0% | |
| CCACTATTTCAGTTTCTATG+TGG | + | tig0019874:157019-157038 | Msa1377290:intron | 35.0% | |
| CATGGATATATCTCTGTGTA+TGG | + | tig0019874:157051-157070 | Msa1377290:intron | 35.0% | |
| ! | TATCTCTGTGTATGGATTGA+AGG | + | tig0019874:157059-157078 | Msa1377290:intron | 35.0% |
| ! | AACTTATGGGTTTTTGCTCA+GGG | + | tig0019874:157183-157202 | Msa1377290:CDS | 35.0% |
| GATCAAAATCATCTGACTCA+CGG | + | tig0019874:157237-157256 | Msa1377290:CDS | 35.0% | |
| ! | CGCATGAAATCGATTTCTTT+AGG | + | tig0019874:157309-157328 | Msa1377290:intron | 35.0% |
| !! | TCGATTTCTTTAGGACCATT+AGG | + | tig0019874:157318-157337 | Msa1377290:intron | 35.0% |
| !! | CGATTTCTTTAGGACCATTA+GGG | + | tig0019874:157319-157338 | Msa1377290:intron | 35.0% |
| TAGGGAAATTAAAAAGGGAG+TGG | + | tig0019874:157337-157356 | Msa1377290:intron | 35.0% | |
| !! | TGGATTTATTGCTGTTTGCA+AGG | + | tig0019874:157534-157553 | Msa1377290:intron | 35.0% |
| !! | TTATTGCTGTTTGCAAGGAA+TGG | + | tig0019874:157539-157558 | Msa1377290:intron | 35.0% |
| GAGAATAGGGTTTCCTTAAA+AGG | + | tig0019874:157582-157601 | Msa1377290:intron | 35.0% | |
| ! | TTCTACACCTTGACCTTTTA+AGG | - | tig0019874:157598-157617 | None:intergenic | 35.0% |
| ATAAACCAAGTAACATGCTC+TGG | + | tig0019874:157645-157664 | Msa1377290:intron | 35.0% | |
| ! | TGTGTGCTCTGTTTTCAATT+TGG | + | tig0019874:157759-157778 | Msa1377290:intron | 35.0% |
| ! | GTGTGCTCTGTTTTCAATTT+GGG | + | tig0019874:157760-157779 | Msa1377290:intron | 35.0% |
| !! | ACAACATTAGAGAGAGTGTT+GGG | + | tig0019874:157805-157824 | Msa1377290:intron | 35.0% |
| GTATATCATTAGTGCCTTCT+AGG | - | tig0019874:158150-158169 | None:intergenic | 35.0% | |
| TATACGATATGACATGGACA+TGG | + | tig0019874:158165-158184 | Msa1377290:intron | 35.0% | |
| ATACGATATGACATGGACAT+GGG | + | tig0019874:158166-158185 | Msa1377290:intron | 35.0% | |
| TAAATGGAGCCTTTGCTAAA+TGG | - | tig0019874:158267-158286 | None:intergenic | 35.0% | |
| CAAAGCCTAAATGGAGTAAA+TGG | - | tig0019874:158283-158302 | None:intergenic | 35.0% | |
| CATTTACTCCATTTAGGCTT+TGG | + | tig0019874:158281-158300 | Msa1377290:intron | 35.0% | |
| TCACTGGACTCTATTATGAT+GGG | - | tig0019874:158512-158531 | None:intergenic | 35.0% | |
| TTCACTGGACTCTATTATGA+TGG | - | tig0019874:158513-158532 | None:intergenic | 35.0% | |
| ATCATAATAGAGTCCAGTGA+AGG | + | tig0019874:158512-158531 | Msa1377290:intron | 35.0% | |
| TCATAATAGAGTCCAGTGAA+GGG | + | tig0019874:158513-158532 | Msa1377290:intron | 35.0% | |
| ATAACAATTTGACCCTTCAC+TGG | - | tig0019874:158528-158547 | None:intergenic | 35.0% | |
| AGTGAAGGGTCAAATTGTTA+TGG | + | tig0019874:158527-158546 | Msa1377290:intron | 35.0% | |
| TGATATTCTAGTCAATAGGC+AGG | + | tig0019874:158594-158613 | Msa1377290:intron | 35.0% | |
| !!! | GGATTTTTTATCCAGGAAAG+TGG | - | tig0019874:158655-158674 | None:intergenic | 35.0% |
| !!! | AGTGGTTGGATTTTTTATCC+AGG | - | tig0019874:158662-158681 | None:intergenic | 35.0% |
| CGACATAATAATAGGGAAGT+GGG | - | tig0019874:158695-158714 | None:intergenic | 35.0% | |
| CGCTAAATTGGCAAATTTCA+TGG | + | tig0019874:158713-158732 | Msa1377290:intron | 35.0% | |
| ! | CAACACGGAAAAATTTTAGG+GGG | - | tig0019874:158852-158871 | None:intergenic | 35.0% |
| AACAATGATTGTCATCCACA+TGG | - | tig0019874:158889-158908 | None:intergenic | 35.0% | |
| GCAAACAAATGTAATCAGTG+TGG | - | tig0019874:158996-159015 | None:intergenic | 35.0% | |
| ! | TTTTGTATGTAACCTTCTGC+AGG | + | tig0019874:159144-159163 | Msa1377290:intron | 35.0% |
| ATTTCTTCTTAAGGACACTC+TGG | + | tig0019874:159236-159255 | Msa1377290:intron | 35.0% | |
| ATGTGCTTCTCTTGAAATAG+TGG | + | tig0019874:159324-159343 | Msa1377290:intron | 35.0% | |
| TGAGGGATAGAGAAAAACAA+GGG | - | tig0019874:159791-159810 | None:intergenic | 35.0% | |
| ! | AAGATACCAAAAGCGTAAGT+TGG | - | tig0019874:159814-159833 | None:intergenic | 35.0% |
| ! | TTACGCTTTTGGTATCTTGT+TGG | + | tig0019874:159816-159835 | Msa1377290:intron | 35.0% |
| !!! | ATCATTCGCCGATTTTTTCT+TGG | + | tig0019874:159894-159913 | Msa1377290:CDS | 35.0% |
| TGTTGAGGGAAATGATTCGA+GGG | + | tig0019874:156090-156109 | Msa1377290:CDS | 40.0% | |
| GAATGCCAAAGTTGTCTGTA+TGG | + | tig0019874:156265-156284 | Msa1377290:intron | 40.0% | |
| TCTCACCATACAGACAACTT+TGG | - | tig0019874:156273-156292 | None:intergenic | 40.0% | |
| AAGTTGTCTGTATGGTGAGA+TGG | + | tig0019874:156273-156292 | Msa1377290:intron | 40.0% | |
| TCTTCACAAAACACGTATGG+AGG | - | tig0019874:156390-156409 | None:intergenic | 40.0% | |
| TGTTGCGTCATAAGCCAAAT+TGG | + | tig0019874:156422-156441 | Msa1377290:intron | 40.0% | |
| GCCAAATTGGCGTGTTTATA+TGG | + | tig0019874:156435-156454 | Msa1377290:intron | 40.0% | |
| !! | AGATGGTGGAATATGGCATA+AGG | - | tig0019874:156472-156491 | None:intergenic | 40.0% |
| !! | TTATGGCAGATGGTGGAATA+TGG | - | tig0019874:156479-156498 | None:intergenic | 40.0% |
| ACGGAAAATTGCAGATTGGA+TGG | + | tig0019874:156898-156917 | Msa1377290:intron | 40.0% | |
| CGGAAAATTGCAGATTGGAT+GGG | + | tig0019874:156899-156918 | Msa1377290:intron | 40.0% | |
| ! | TGTTTCAGGCTTTGATGGTT+TGG | + | tig0019874:157148-157167 | Msa1377290:intron | 40.0% |
| !! | GCTTTGGGGAATCAACTTAT+GGG | + | tig0019874:157170-157189 | Msa1377290:CDS | 40.0% |
| ! | CAACTTATGGGTTTTTGCTC+AGG | + | tig0019874:157182-157201 | Msa1377290:CDS | 40.0% |
| ATCTGACTCACGGAGAAATA+TGG | + | tig0019874:157247-157266 | Msa1377290:CDS | 40.0% | |
| TGTGCATCTAGGAGAGAATA+GGG | + | tig0019874:157569-157588 | Msa1377290:intron | 40.0% | |
| AGGGTTTCCTTAAAAGGTCA+AGG | + | tig0019874:157588-157607 | Msa1377290:intron | 40.0% | |
| ! | GACAACATTAGAGAGAGTGT+TGG | + | tig0019874:157804-157823 | Msa1377290:intron | 40.0% |
| !! | CAACATTAGAGAGAGTGTTG+GGG | + | tig0019874:157806-157825 | Msa1377290:intron | 40.0% |
| AGATGGTTGAAACTAGGCTT+AGG | + | tig0019874:157847-157866 | Msa1377290:intron | 40.0% | |
| AAACTAGGCTTAGGTGGTTT+GGG | + | tig0019874:157856-157875 | Msa1377290:intron | 40.0% | |
| GCATGTAGAGAGAAGACTTA+TGG | + | tig0019874:157878-157897 | Msa1377290:intron | 40.0% | |
| AGTTAGGAGAGTAGATCAGA+TGG | + | tig0019874:157908-157927 | Msa1377290:intron | 40.0% | |
| ! | GATAAGGAGTGGTTGTTGTT+GGG | + | tig0019874:158074-158093 | Msa1377290:intron | 40.0% |
| ! | ACCTAGACTCCCAATTTTGA+GGG | - | tig0019874:158239-158258 | None:intergenic | 40.0% |
| ! | TACCTAGACTCCCAATTTTG+AGG | - | tig0019874:158240-158259 | None:intergenic | 40.0% |
| AGGTATCCTCCATTTAGCAA+AGG | + | tig0019874:158255-158274 | Msa1377290:intron | 40.0% | |
| AGGCTCCATTTACTCCATTT+AGG | + | tig0019874:158275-158294 | Msa1377290:intron | 40.0% | |
| TCTCTCATCCAAAGCCTAAA+TGG | - | tig0019874:158292-158311 | None:intergenic | 40.0% | |
| TCAGCCTATGGAAAACGTAA+GGG | - | tig0019874:158568-158587 | None:intergenic | 40.0% | |
| ATCAGCCTATGGAAAACGTA+AGG | - | tig0019874:158569-158588 | None:intergenic | 40.0% | |
| GCGACATAATAATAGGGAAG+TGG | - | tig0019874:158696-158715 | None:intergenic | 40.0% | |
| GCACACTGCAATAATCAACA+CGG | - | tig0019874:158867-158886 | None:intergenic | 40.0% | |
| ATGTATGCTGTCATACTGGT+TGG | - | tig0019874:158912-158931 | None:intergenic | 40.0% | |
| TGTGGATGCATCTATTACAC+TGG | - | tig0019874:158978-158997 | None:intergenic | 40.0% | |
| CTTGTATGCTGCTATTGTGA+TGG | + | tig0019874:159171-159190 | Msa1377290:intron | 40.0% | |
| ! | GCGAATAGTTTTCCCATTAC+AGG | + | tig0019874:159258-159277 | Msa1377290:intron | 40.0% |
| GCACAAGTAAAACACGTAGA+AGG | + | tig0019874:159492-159511 | Msa1377290:intron | 40.0% | |
| CTAAATTAGCCCACCCAAAT+TGG | + | tig0019874:159596-159615 | Msa1377290:intron | 40.0% | |
| TTAACACTGCAAACCCACTT+GGG | - | tig0019874:159695-159714 | None:intergenic | 40.0% | |
| TTTAACACTGCAAACCCACT+TGG | - | tig0019874:159696-159715 | None:intergenic | 40.0% | |
| GTGAGGGATAGAGAAAAACA+AGG | - | tig0019874:159792-159811 | None:intergenic | 40.0% | |
| GTCCATACTGCATTGCGTAA+AGG | + | tig0019874:155285-155304 | Msa1377290:five_prime_UTR | 45.0% | |
| AGCCTTTACGCAATGCAGTA+TGG | - | tig0019874:155290-155309 | None:intergenic | 45.0% | |
| CGTAAGTGAGGACTATTAGC+AGG | - | tig0019874:155641-155660 | None:intergenic | 45.0% | |
| AGTCCTCACTTACGCAAATC+TGG | + | tig0019874:155647-155666 | Msa1377290:five_prime_UTR | 45.0% | |
| GTCCTCACTTACGCAAATCT+GGG | + | tig0019874:155648-155667 | Msa1377290:five_prime_UTR | 45.0% | |
| AGTCCCTGACGTCAACTTAT+TGG | + | tig0019874:155833-155852 | Msa1377290:five_prime_UTR | 45.0% | |
| GTCCCTGACGTCAACTTATT+GGG | + | tig0019874:155834-155853 | Msa1377290:five_prime_UTR | 45.0% | |
| TCCCTGACGTCAACTTATTG+GGG | + | tig0019874:155835-155854 | Msa1377290:five_prime_UTR | 45.0% | |
| ! | CCACGTGGCATGCTTTTATT+GGG | + | tig0019874:155858-155877 | Msa1377290:five_prime_UTR | 45.0% |
| CTGTTGAGGGAAATGATTCG+AGG | + | tig0019874:156089-156108 | Msa1377290:CDS | 45.0% | |
| GTTGAGGGAAATGATTCGAG+GGG | + | tig0019874:156091-156110 | Msa1377290:CDS | 45.0% | |
| CTCCACAACAAAACAGGTGA+GGG | - | tig0019874:156151-156170 | None:intergenic | 45.0% | |
| TCTCCACAACAAAACAGGTG+AGG | - | tig0019874:156152-156171 | None:intergenic | 45.0% | |
| CTGTTGTTAAATGGCAGCCA+AGG | + | tig0019874:156325-156344 | Msa1377290:intron | 45.0% | |
| GCTTATGACGCAACAATGAC+AGG | - | tig0019874:156417-156436 | None:intergenic | 45.0% | |
| !! | GTGTTGTTTATGGCAGATGG+TGG | - | tig0019874:156486-156505 | None:intergenic | 45.0% |
| CCATCTGCCATAAACAACAC+CGG | + | tig0019874:156486-156505 | Msa1377290:intron | 45.0% | |
| CATCTGCCATAAACAACACC+GGG | + | tig0019874:156487-156506 | Msa1377290:intron | 45.0% | |
| TTGGGGATTCATCTGTTGCA+AGG | + | tig0019874:156759-156778 | Msa1377290:intron | 45.0% | |
| TGAGAATGAGTGCAGACAAG+CGG | + | tig0019874:156931-156950 | Msa1377290:CDS | 45.0% | |
| AAACTAACCGCGAGAAGAAG+AGG | - | tig0019874:156993-157012 | None:intergenic | 45.0% | |
| ! | AGGCTTTGATGGTTTGGCTT+TGG | + | tig0019874:157154-157173 | Msa1377290:intron | 45.0% |
| !! | GGCTTTGATGGTTTGGCTTT+GGG | + | tig0019874:157155-157174 | Msa1377290:intron | 45.0% |
| !! | GCTTTGATGGTTTGGCTTTG+GGG | + | tig0019874:157156-157175 | Msa1377290:CDS | 45.0% |
| !! | GGCTTTGGGGAATCAACTTA+TGG | + | tig0019874:157169-157188 | Msa1377290:CDS | 45.0% |
| ! | TTATGGGTTTTTGCTCAGGG+TGG | + | tig0019874:157186-157205 | Msa1377290:CDS | 45.0% |
| GACTCACGGAGAAATATGGA+AGG | + | tig0019874:157251-157270 | Msa1377290:CDS | 45.0% | |
| ATGGACATTCCTGTGCATCT+AGG | + | tig0019874:157558-157577 | Msa1377290:intron | 45.0% | |
| CTATTCTCTCCTAGATGCAC+AGG | - | tig0019874:157570-157589 | None:intergenic | 45.0% | |
| CTGTGCATCTAGGAGAGAAT+AGG | + | tig0019874:157568-157587 | Msa1377290:intron | 45.0% | |
| AACCAAGTAACATGCTCTGG+AGG | + | tig0019874:157648-157667 | Msa1377290:intron | 45.0% | |
| ! | ACCAAGTAACATGCTCTGGA+GGG | + | tig0019874:157649-157668 | Msa1377290:intron | 45.0% |
| TGGTTGAAACTAGGCTTAGG+TGG | + | tig0019874:157850-157869 | Msa1377290:intron | 45.0% | |
| GAAACTAGGCTTAGGTGGTT+TGG | + | tig0019874:157855-157874 | Msa1377290:intron | 45.0% | |
| TAGGAGAGTAGATCAGATGG+AGG | + | tig0019874:157911-157930 | Msa1377290:intron | 45.0% | |
| AGGAGAGTAGATCAGATGGA+GGG | + | tig0019874:157912-157931 | Msa1377290:intron | 45.0% | |
| ACTCCTTATCCCACTATGTG+GGG | - | tig0019874:158064-158083 | None:intergenic | 45.0% | |
| CACTCCTTATCCCACTATGT+GGG | - | tig0019874:158065-158084 | None:intergenic | 45.0% | |
| GGATAAGGAGTGGTTGTTGT+TGG | + | tig0019874:158073-158092 | Msa1377290:intron | 45.0% | |
| ATTAGTGCCTTCTAGGCATC+AGG | - | tig0019874:158143-158162 | None:intergenic | 45.0% | |
| ATATGACATGGACATGGGAG+AGG | + | tig0019874:158171-158190 | Msa1377290:intron | 45.0% | |
| ACCCTCAAAATTGGGAGTCT+AGG | + | tig0019874:158235-158254 | Msa1377290:intron | 45.0% | |
| ATGGAGCCTTTGCTAAATGG+AGG | - | tig0019874:158264-158283 | None:intergenic | 45.0% | |
| AACAGTAGTCGTGTCGTGTT+GGG | - | tig0019874:158450-158469 | None:intergenic | 45.0% | |
| AAACAGTAGTCGTGTCGTGT+TGG | - | tig0019874:158451-158470 | None:intergenic | 45.0% | |
| ! | TATCCAGGAAAGTGGGTTCT+TGG | - | tig0019874:158647-158666 | None:intergenic | 45.0% |
| GATTATTGCAGTGTGCCATG+TGG | + | tig0019874:158871-158890 | Msa1377290:intron | 45.0% | |
| !! | TTGTCTGGTGGTATTGGCTT+GGG | - | tig0019874:159672-159691 | None:intergenic | 45.0% |
| !! | CCAAAAGCGTAAGTTGGTGA+GGG | - | tig0019874:159808-159827 | None:intergenic | 45.0% |
| !! | ACCAAAAGCGTAAGTTGGTG+AGG | - | tig0019874:159809-159828 | None:intergenic | 45.0% |
| AGTGTGGATCTGTGCGGAAA+AGG | - | tig0019874:155373-155392 | None:intergenic | 50.0% | |
| GATTAGCGTAGCGATGAGTG+TGG | - | tig0019874:155389-155408 | None:intergenic | 50.0% | |
| CTCCCAGATTTGCGTAAGTG+AGG | - | tig0019874:155653-155672 | None:intergenic | 50.0% | |
| ! | GCCCCAATAAGTTGACGTCA+GGG | - | tig0019874:155839-155858 | None:intergenic | 50.0% |
| ! | GCCACGTGGCATGCTTTTAT+TGG | + | tig0019874:155857-155876 | Msa1377290:five_prime_UTR | 50.0% |
| ! | CCCAATAAAAGCATGCCACG+TGG | - | tig0019874:155861-155880 | None:intergenic | 50.0% |
| CTAGTACCTGACGTCATACG+CGG | - | tig0019874:155884-155903 | None:intergenic | 50.0% | |
| GCAACGCCAATGAATGGTTC+TGG | + | tig0019874:156118-156137 | Msa1377290:CDS | 50.0% | |
| !! | TGCCCTCACCTGTTTTGTTG+TGG | + | tig0019874:156146-156165 | Msa1377290:CDS | 50.0% |
| !! | CCGGTGTTGTTTATGGCAGA+TGG | - | tig0019874:156489-156508 | None:intergenic | 50.0% |
| GAGAATGAGTGCAGACAAGC+GGG | + | tig0019874:156932-156951 | Msa1377290:CDS | 50.0% | |
| TCTATGTGGGTGTGCACACA+TGG | + | tig0019874:157033-157052 | Msa1377290:intron | 50.0% | |
| ACCCTCCAGAGCATGTTACT+TGG | - | tig0019874:157653-157672 | None:intergenic | 50.0% | |
| !! | TGGAGGGTGTTCTGTTGGAA+TGG | + | tig0019874:157665-157684 | Msa1377290:intron | 50.0% |
| GGGTGTTCTGTTGGAATGGA+AGG | + | tig0019874:157669-157688 | Msa1377290:intron | 50.0% | |
| GGAGAGTAGATCAGATGGAG+GGG | + | tig0019874:157913-157932 | Msa1377290:intron | 50.0% | |
| TAGATCAGATGGAGGGGAGT+TGG | + | tig0019874:157919-157938 | Msa1377290:intron | 50.0% | |
| AGTTGGATCACTGGAGGTAG+AGG | + | tig0019874:157936-157955 | Msa1377290:intron | 50.0% | |
| CTTATCCCACTATGTGGGGT+CGG | - | tig0019874:158060-158079 | None:intergenic | 50.0% | |
| CCACTCCTTATCCCACTATG+TGG | - | tig0019874:158066-158085 | None:intergenic | 50.0% | |
| ! | CCACATAGTGGGATAAGGAG+TGG | + | tig0019874:158063-158082 | Msa1377290:intron | 50.0% |
| ! | GTGGTTGTTGTTGGGTGCTT+TGG | + | tig0019874:158082-158101 | Msa1377290:intron | 50.0% |
| ACGATAGCCTGATGCCTAGA+AGG | + | tig0019874:158133-158152 | Msa1377290:intron | 50.0% | |
| ACAGTAGTCGTGTCGTGTTG+GGG | - | tig0019874:158449-158468 | None:intergenic | 50.0% | |
| ! | GCAGCCCTTACGTTTTCCAT+AGG | + | tig0019874:158561-158580 | Msa1377290:intron | 50.0% |
| TGGGTTCTTAGCACAGTGGT+TGG | - | tig0019874:158676-158695 | None:intergenic | 50.0% | |
| ! | GAAGTGGGTTCTTAGCACAG+TGG | - | tig0019874:158680-158699 | None:intergenic | 50.0% |
| !! | CATACAAGAGCACCTGCAGA+AGG | - | tig0019874:159159-159178 | None:intergenic | 50.0% |
| ! | ATTCTCCCCGGTGCCAATTT+GGG | - | tig0019874:159612-159631 | None:intergenic | 50.0% |
| GAATCGAACCTGAGACCTTG+AGG | + | tig0019874:159628-159647 | Msa1377290:intron | 50.0% | |
| ! | CTTGAGGAGGAGCATACTCT+CGG | + | tig0019874:159644-159663 | Msa1377290:intron | 50.0% |
| ! | TTGAGGAGGAGCATACTCTC+GGG | + | tig0019874:159645-159664 | Msa1377290:intron | 50.0% |
| !! | GTTGTCTGGTGGTATTGGCT+TGG | - | tig0019874:159673-159692 | None:intergenic | 50.0% |
| ! | CTTGGGTTGTCTGGTGGTAT+TGG | - | tig0019874:159678-159697 | None:intergenic | 50.0% |
| ATACCACCAGACAACCCAAG+TGG | + | tig0019874:159678-159697 | Msa1377290:intron | 50.0% | |
| TACCACCAGACAACCCAAGT+GGG | + | tig0019874:159679-159698 | Msa1377290:intron | 50.0% | |
| ! | CCCTCACCAACTTACGCTTT+TGG | + | tig0019874:159805-159824 | Msa1377290:intron | 50.0% |
| GCGATGAGTGTGGATCTGTG+CGG | - | tig0019874:155379-155398 | None:intergenic | 55.0% | |
| ! | GGCCCCAATAAGTTGACGTC+AGG | - | tig0019874:155840-155859 | None:intergenic | 55.0% |
| GTCAACTTATTGGGGCCACG+TGG | + | tig0019874:155843-155862 | Msa1377290:five_prime_UTR | 55.0% | |
| GAGGGAAATGATTCGAGGGG+TGG | + | tig0019874:156094-156113 | Msa1377290:CDS | 55.0% | |
| GGTGGAGCAACGCCAATGAA+TGG | + | tig0019874:156112-156131 | Msa1377290:CDS | 55.0% | |
| !! | ACTCTGCCATGGAAGTGCCT+TGG | - | tig0019874:156345-156364 | None:intergenic | 55.0% |
| ! | AAGGCACTTCCATGGCAGAG+TGG | + | tig0019874:156344-156363 | Msa1377290:intron | 55.0% |
| !! | GCAGCTCCCGGTGTTGTTTA+TGG | - | tig0019874:156496-156515 | None:intergenic | 55.0% |
| !! | TGCTCTGGAGGGTGTTCTGT+TGG | + | tig0019874:157660-157679 | Msa1377290:intron | 55.0% |
| ATGGAGGGGAGTTGGATCAC+TGG | + | tig0019874:157927-157946 | Msa1377290:intron | 55.0% | |
| ATCTAGCCGACCCCACATAG+TGG | + | tig0019874:158051-158070 | Msa1377290:intron | 55.0% | |
| TCTAGCCGACCCCACATAGT+GGG | + | tig0019874:158052-158071 | Msa1377290:intron | 55.0% | |
| ! | CGACCCCACATAGTGGGATA+AGG | + | tig0019874:158058-158077 | Msa1377290:intron | 55.0% |
| TGGGTTCTTGGCACAGCTGT+AGG | - | tig0019874:158635-158654 | None:intergenic | 55.0% | |
| GTGCCAAGAACCCACTTTCC+TGG | + | tig0019874:158641-158660 | Msa1377290:intron | 55.0% | |
| TAGCCCACCCAAATTGGCAC+CGG | + | tig0019874:159602-159621 | Msa1377290:intron | 55.0% | |
| ! | GATTCTCCCCGGTGCCAATT+TGG | - | tig0019874:159613-159632 | None:intergenic | 55.0% |
| GTCTCAGGTTCGATTCTCCC+CGG | - | tig0019874:159624-159643 | None:intergenic | 55.0% | |
| TCGAACCTGAGACCTTGAGG+AGG | + | tig0019874:159631-159650 | Msa1377290:intron | 55.0% | |
| ATGCTCCTCCTCAAGGTCTC+AGG | - | tig0019874:159639-159658 | None:intergenic | 55.0% | |
| ! | CGAGAGTATGCTCCTCCTCA+AGG | - | tig0019874:159646-159665 | None:intergenic | 55.0% |
| ! | AACCCACTTGGGTTGTCTGG+TGG | - | tig0019874:159684-159703 | None:intergenic | 55.0% |
| ! | GCAAACCCACTTGGGTTGTC+TGG | - | tig0019874:159687-159706 | None:intergenic | 55.0% |
| ATTGGGCCGCGTATGACGTC+AGG | + | tig0019874:155875-155894 | Msa1377290:exon | 60.0% | |
| ! | TGGCAGCCAAGGCACTTCCA+TGG | + | tig0019874:156336-156355 | Msa1377290:intron | 60.0% |
| ACTTCCATGGCAGAGTGGCG+TGG | + | tig0019874:156349-156368 | Msa1377290:intron | 60.0% | |
| TATGCCACGCCACTCTGCCA+TGG | - | tig0019874:156356-156375 | None:intergenic | 60.0% | |
| GAGGGGAGTTGGATCACTGG+AGG | + | tig0019874:157930-157949 | Msa1377290:intron | 60.0% | |
| AGCCCACCCAAATTGGCACC+GGG | + | tig0019874:159603-159622 | Msa1377290:intron | 60.0% | |
| ! | TCCCCGGTGCCAATTTGGGT+GGG | - | tig0019874:159608-159627 | None:intergenic | 60.0% |
| GCCCACCCAAATTGGCACCG+GGG | + | tig0019874:159604-159623 | Msa1377290:intron | 65.0% | |
| ! | CTCCCCGGTGCCAATTTGGG+TGG | - | tig0019874:159609-159628 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019874 | gene | 155269 | 159939 | 155269 | ID=Msa1377290;Name=Msa1377290 |
| tig0019874 | mRNA | 155269 | 159939 | 155269 | ID=Msa1377290-mRNA-1;Parent=Msa1377290;Name=Msa1377290-mRNA-1;_AED=0.10;_eAED=0.10;_QI=367|0.71|0.87|1|0.57|0.5|8|0|167 |
| tig0019874 | exon | 155269 | 155429 | 155269 | ID=Msa1377290-mRNA-1:exon:5523;Parent=Msa1377290-mRNA-1 |
| tig0019874 | exon | 155558 | 155695 | 155558 | ID=Msa1377290-mRNA-1:exon:5524;Parent=Msa1377290-mRNA-1 |
| tig0019874 | exon | 155819 | 155896 | 155819 | ID=Msa1377290-mRNA-1:exon:5525;Parent=Msa1377290-mRNA-1 |
| tig0019874 | exon | 156044 | 156177 | 156044 | ID=Msa1377290-mRNA-1:exon:5526;Parent=Msa1377290-mRNA-1 |
| tig0019874 | exon | 156912 | 157004 | 156912 | ID=Msa1377290-mRNA-1:exon:5527;Parent=Msa1377290-mRNA-1 |
| tig0019874 | exon | 157156 | 157272 | 157156 | ID=Msa1377290-mRNA-1:exon:5528;Parent=Msa1377290-mRNA-1 |
| tig0019874 | exon | 158882 | 158977 | 158882 | ID=Msa1377290-mRNA-1:exon:5529;Parent=Msa1377290-mRNA-1 |
| tig0019874 | exon | 159889 | 159939 | 159889 | ID=Msa1377290-mRNA-1:exon:5530;Parent=Msa1377290-mRNA-1 |
| tig0019874 | five_prime_UTR | 155269 | 155429 | 155269 | ID=Msa1377290-mRNA-1:five_prime_utr;Parent=Msa1377290-mRNA-1 |
| tig0019874 | five_prime_UTR | 155558 | 155695 | 155558 | ID=Msa1377290-mRNA-1:five_prime_utr;Parent=Msa1377290-mRNA-1 |
| tig0019874 | five_prime_UTR | 155819 | 155886 | 155819 | ID=Msa1377290-mRNA-1:five_prime_utr;Parent=Msa1377290-mRNA-1 |
| tig0019874 | CDS | 155887 | 155896 | 155887 | ID=Msa1377290-mRNA-1:cds;Parent=Msa1377290-mRNA-1 |
| tig0019874 | CDS | 156044 | 156177 | 156044 | ID=Msa1377290-mRNA-1:cds;Parent=Msa1377290-mRNA-1 |
| tig0019874 | CDS | 156912 | 157004 | 156912 | ID=Msa1377290-mRNA-1:cds;Parent=Msa1377290-mRNA-1 |
| tig0019874 | CDS | 157156 | 157272 | 157156 | ID=Msa1377290-mRNA-1:cds;Parent=Msa1377290-mRNA-1 |
| tig0019874 | CDS | 158882 | 158977 | 158882 | ID=Msa1377290-mRNA-1:cds;Parent=Msa1377290-mRNA-1 |
| tig0019874 | CDS | 159889 | 159939 | 159889 | ID=Msa1377290-mRNA-1:cds;Parent=Msa1377290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
