AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0116790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0116790 MtrunA17_Chr1g0173391 99.740 769 2 0 1 769 1 769 0.0 1582
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0116790 AT2G41770.1 71.337 778 207 6 1 769 1 771 0.0 1172
Msa0116790 AT3G57420.1 70.323 775 214 6 1 769 1 765 0.0 1136

Find 213 sgRNAs with CRISPR-Local

Find 376 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGATGAACAAGCGAATT+TGG 0.154291 1_3:-36152714 Msa0116790:CDS
TGGATCGTGGTTTCGGTTTC+GGG 0.176847 1_3:-36152851 Msa0116790:CDS
TTACCCCTTTATTGTATATT+TGG 0.182549 1_3:-36149015 Msa0116790:three_prime_UTR
GCAGAAATAAACTGAATAAA+AGG 0.182801 1_3:+36148867 None:intergenic
ATGGATCGTGGTTTCGGTTT+CGG 0.202501 1_3:-36152852 Msa0116790:CDS
CTTGAATGGAGGTTGCTTTA+TGG 0.204494 1_3:-36151600 Msa0116790:CDS
TTGTTATCTCACACCTTATT+AGG 0.208278 1_3:+36153465 None:intergenic
GGCTTTGATGCTTCCGGTTT+CGG 0.226169 1_3:-36152165 Msa0116790:CDS
TTAATCCGTATGTTCATTTC+GGG 0.242895 1_3:-36152466 Msa0116790:CDS
CCATTTCTCCGATAAGAAAT+TGG 0.244039 1_3:+36152871 None:intergenic
GGAAGTGATTGATGGGGATT+TGG 0.244626 1_3:-36152579 Msa0116790:CDS
CTGCATGAAGAACATCTTAT+AGG 0.244786 1_3:-36148848 Msa0116790:three_prime_UTR
GTTAATCCGTATGTTCATTT+CGG 0.262879 1_3:-36152467 Msa0116790:CDS
TGGTCGTTTGATTAAGTATT+TGG 0.267726 1_3:-36151985 Msa0116790:CDS
TTGAATGGAGGTTGCTTTAT+GGG 0.271758 1_3:-36151599 Msa0116790:CDS
ATTGGGGACAGAGGCTTCTT+TGG 0.272761 1_3:-36152109 Msa0116790:CDS
CAAGTGTATTACATGTTTCT+TGG 0.275021 1_3:+36149148 None:intergenic
ATAATACAATTCTTAACTAT+TGG 0.279959 1_3:-36150636 Msa0116790:CDS
GGATTTGGATTTGGATTTGA+TGG 0.280995 1_3:+36153169 None:intergenic
CAGAGGCTTCTTTGGGAAGT+TGG 0.281653 1_3:-36152101 Msa0116790:CDS
ATGTGAAACACCACCTAATA+AGG 0.289444 1_3:-36153478 Msa0116790:five_prime_UTR
CAATACAACTTCAACTAGTT+TGG 0.291418 1_3:+36153421 None:intergenic
ACTTACTGCCGCTTGGCTTC+AGG 0.292900 1_3:-36151865 Msa0116790:CDS
AACAAGCGAATTTGGGGTTT+AGG 0.295560 1_3:-36152706 Msa0116790:CDS
GTGGACCAAATATACAATAA+AGG 0.296960 1_3:+36149010 None:intergenic
TTGGATGAACAAGCGAATTT+GGG 0.298467 1_3:-36152713 Msa0116790:CDS
GAAGTGATTGATGGGGATTT+GGG 0.301864 1_3:-36152578 Msa0116790:CDS
GGAGAAATGGATCGTGGTTT+CGG 0.315807 1_3:-36152858 Msa0116790:CDS
ACAAGCGAATTTGGGGTTTA+GGG 0.318031 1_3:-36152705 Msa0116790:CDS
TAAGGTTGAGGTTACTTGTT+TGG 0.318086 1_3:+36153377 None:intergenic
TCCTATGTTCTTTGTCTCAA+TGG 0.319924 1_3:-36149403 Msa0116790:CDS
TATTAAGCTTATCAGAATAA+TGG 0.322958 1_3:-36149247 Msa0116790:CDS
GGATTAACAACAGTCCTATT+AGG 0.325620 1_3:+36152482 None:intergenic
TAATTCATCGACTCTTTATT+CGG 0.328571 1_3:-36149319 Msa0116790:CDS
TGGACCAAATATACAATAAA+GGG 0.337671 1_3:+36149011 None:intergenic
GGACGTAGATCTTGTTGTTC+AGG 0.339494 1_3:-36151538 Msa0116790:CDS
GCAGCCAAGGCTAATGTCTT+TGG 0.343412 1_3:-36151820 Msa0116790:CDS
AGTTGCCGTCTGTTCATCTT+GGG 0.343959 1_3:-36151737 Msa0116790:CDS
TGCATGAAGAACATCTTATA+GGG 0.345636 1_3:-36148847 Msa0116790:three_prime_UTR
CAAACTGTGGATCACTAATA+AGG 0.351930 1_3:-36150590 Msa0116790:intron
TGCCTTATGATTCTTATGTT+AGG 0.355042 1_3:-36152670 Msa0116790:CDS
TCAAGGGCCGTGCGTTCAAC+AGG 0.356613 1_3:+36151618 None:intergenic
CCAATTTCTTATCGGAGAAA+TGG 0.359485 1_3:-36152871 Msa0116790:CDS
TGTTGTTCAGGAGGTCCATT+TGG 0.361246 1_3:-36151526 Msa0116790:CDS
CTTATTAGTGATCCACAGTT+TGG 0.364518 1_3:+36150591 None:intergenic
CCTTTCAAACCAATTCCATT+AGG 0.365051 1_3:+36149208 None:intergenic
TAGATTGTTTGAGAAGATCT+TGG 0.375637 1_3:-36151940 Msa0116790:CDS
GGATCCACTCCTAATGGAAT+TGG 0.390534 1_3:-36149217 Msa0116790:CDS
ATAGTCATGATAATCCTAAT+AGG 0.391156 1_3:-36152496 Msa0116790:CDS
TGAAGTTGTATTGAAGCTTA+AGG 0.391419 1_3:-36153411 Msa0116790:five_prime_UTR
CATCTTGGGGTTGAAGAAAC+AGG 0.392444 1_3:-36151723 Msa0116790:CDS
GCGGTACGCCAATTTCTTAT+CGG 0.393983 1_3:-36152879 Msa0116790:CDS
AAGATCTTTCTCCTCTGAAA+AGG 0.404636 1_3:+36152019 None:intergenic
CTACTGTTCATAGATATGAT+AGG 0.407020 1_3:-36152055 Msa0116790:CDS
TTGGAAAATGTGGGTGAGAT+TGG 0.407974 1_3:-36152413 Msa0116790:CDS
CAGAAATAAACTGAATAAAA+GGG 0.411894 1_3:+36148868 None:intergenic
AAGGTTGAGGTTACTTGTTT+GGG 0.411934 1_3:+36153378 None:intergenic
GCCGAAGGTTGCATTGCCTC+AGG 0.412972 1_3:-36152243 Msa0116790:CDS
TTGGGGACAGAGGCTTCTTT+GGG 0.414271 1_3:-36152108 Msa0116790:CDS
AGGCTAATGTCTTTGGAACT+TGG 0.425095 1_3:-36151813 Msa0116790:CDS
TTTGAGCTGAAGAATGCTCT+TGG 0.429481 1_3:+36153194 None:intergenic
ACTTGTATGCTTGGTCCAAA+TGG 0.429651 1_3:+36151511 None:intergenic
AAGTTGCCGTCTGTTCATCT+TGG 0.435637 1_3:-36151738 Msa0116790:CDS
GGATCTCTAGATTGTCTACT+AGG 0.437860 1_3:+36149442 None:intergenic
TCGAGTATCCACGCGTCGAT+TGG 0.438176 1_3:-36152934 Msa0116790:CDS
CTTCAGGATTTGTTAGCTGT+TGG 0.439157 1_3:-36151849 Msa0116790:CDS
GCCATCCTACTAACCGAAAC+CGG 0.441030 1_3:+36152152 None:intergenic
CCCTGAGGCAATGCAACCTT+CGG 0.443888 1_3:+36152242 None:intergenic
TTCCTAACATAAGAATCATA+AGG 0.444632 1_3:+36152668 None:intergenic
TCCGGTTTCGGTTAGTAGGA+TGG 0.448274 1_3:-36152153 Msa0116790:CDS
ACAGGGCTTACTTGTATGCT+TGG 0.450117 1_3:+36151502 None:intergenic
TCTTATGTTAGGAAAATTGT+TGG 0.452749 1_3:-36152659 Msa0116790:CDS
GTATGAGTAAAACGGTTTGT+AGG 0.456341 1_3:+36153118 None:intergenic
AAGTGATTGATGGGGATTTG+GGG 0.459051 1_3:-36152577 Msa0116790:CDS
CTGTTTCTTAATACTAGCTC+AGG 0.460358 1_3:-36149179 Msa0116790:three_prime_UTR
TGCTTCCGGTTTCGGTTAGT+AGG 0.460720 1_3:-36152157 Msa0116790:CDS
TGGGAAACAGTTTATTCAGC+AGG 0.461080 1_3:-36152360 Msa0116790:CDS
GGTTGGCAGGTTGTGGCGAT+TGG 0.462329 1_3:-36152788 Msa0116790:CDS
ATTTCGGGCAAAGATCGGTT+TGG 0.462691 1_3:-36152451 Msa0116790:CDS
GGTGAAGGTGAAGGGTTGGC+AGG 0.466313 1_3:-36152801 Msa0116790:CDS
ATCGTATTAAAAGAATTAAC+CGG 0.466996 1_3:+36152209 None:intergenic
TTGAACGCACGGCCCTTGAA+TGG 0.467596 1_3:-36151614 Msa0116790:CDS
TGCTCATCATGCATTGCAGC+GGG 0.467759 1_3:-36151641 Msa0116790:CDS
CATAAAGCAACCTCCATTCA+AGG 0.468909 1_3:+36151601 None:intergenic
TAAGAATTGTATTATCCTGC+AGG 0.478651 1_3:+36150644 None:intergenic
GAGTGATGAGTTGAAGAAAT+TGG 0.478927 1_3:-36152822 Msa0116790:CDS
TGAAGGGGATCCACTCCTAA+TGG 0.480182 1_3:-36149223 Msa0116790:CDS
ACAAGCAAGCATGGTACAAA+AGG 0.482807 1_3:-36149601 Msa0116790:CDS
GATAGAGGGGAAGTGATTGA+TGG 0.484221 1_3:-36152587 Msa0116790:CDS
TTTATCTTCTAAAATTTGTA+GGG 0.485311 1_3:-36149061 Msa0116790:three_prime_UTR
CAAGAAACATGTAATACACT+TGG 0.488778 1_3:-36149147 Msa0116790:three_prime_UTR
CCGGCGGATTGGAGTTTGAA+AGG 0.489846 1_3:-36152752 Msa0116790:CDS
CTTATGTTAGGAAAATTGTT+GGG 0.491867 1_3:-36152658 Msa0116790:CDS
TGGAAAATGTGGGTGAGATT+GGG 0.491908 1_3:-36152412 Msa0116790:CDS
GGTGAAGGGTTGGCAGGTTG+TGG 0.495035 1_3:-36152795 Msa0116790:CDS
ATTCGAGAACTCCGGCGGAT+TGG 0.496519 1_3:-36152763 Msa0116790:CDS
TGTTCATTTCGGGCAAAGAT+CGG 0.496894 1_3:-36152456 Msa0116790:CDS
ATAGAGGGGAAGTGATTGAT+GGG 0.496914 1_3:-36152586 Msa0116790:CDS
CGCGAATTTCTATCGGCGAT+TGG 0.499666 1_3:+36152899 None:intergenic
GGTTCTTTGTATGAGTAAAA+CGG 0.504942 1_3:+36153110 None:intergenic
GAAGAAATTGGTGAAGGTGA+AGG 0.511928 1_3:-36152810 Msa0116790:CDS
TTTGTGGGATAAACTCCCTC+TGG 0.513496 1_3:+36151760 None:intergenic
CCTAATGGAATTGGTTTGAA+AGG 0.515705 1_3:-36149208 Msa0116790:exon
AGGTTTGCCGTTGGAAAATG+TGG 0.515820 1_3:-36152423 Msa0116790:CDS
ATTTGATAAGCATGCGCCGA+AGG 0.516174 1_3:-36152258 Msa0116790:CDS
AGGCTTCTTTGGGAAGTTGG+TGG 0.517813 1_3:-36152098 Msa0116790:CDS
GATGTTGAATTGGTTGGTGA+AGG 0.518714 1_3:-36152545 Msa0116790:CDS
ACACTCCATGGATGAACAGC+AGG 0.520445 1_3:+36149288 None:intergenic
TAAAACACAGAATCAACATC+AGG 0.525213 1_3:+36152320 None:intergenic
GGATCCAGGTACCCGAGTCT+TGG 0.526382 1_3:-36149668 Msa0116790:intron
ATCTTCTAAAATTTGTAGGG+TGG 0.527341 1_3:-36149058 Msa0116790:three_prime_UTR
AGATTGCTAATTTAATCAGA+TGG 0.527605 1_3:-36151686 Msa0116790:CDS
ATTCAGCAGGGGATTTCGAA+TGG 0.529606 1_3:-36152347 Msa0116790:CDS
GTATTTGGTTCTGTGGAGAT+CGG 0.533204 1_3:-36151970 Msa0116790:CDS
AAGTCCCTGCTGTTCATCCA+TGG 0.538895 1_3:-36149293 Msa0116790:CDS
TGCTCACTTGATACACTCCA+TGG 0.539121 1_3:+36149276 None:intergenic
GGCGTACCGCGAATTTCTAT+CGG 0.540568 1_3:+36152892 None:intergenic
CTTATCAGAATAATGGCTGA+AGG 0.541500 1_3:-36149240 Msa0116790:CDS
TTATCTCACACCTTATTAGG+TGG 0.541597 1_3:+36153468 None:intergenic
AGATCTTTCTCCTCTGAAAA+GGG 0.542007 1_3:+36152020 None:intergenic
CAAACCAATTCCATTAGGAG+TGG 0.547394 1_3:+36149213 None:intergenic
AATTGGTTGGTGAAGGTGCT+AGG 0.547539 1_3:-36152538 Msa0116790:CDS
TAGGAATTGCAACCTTCTGA+TGG 0.548976 1_3:+36149421 None:intergenic
TACTGTTCATAGATATGATA+GGG 0.549071 1_3:-36152054 Msa0116790:CDS
GAGCTATGCAATGGCAGAGG+AGG 0.549739 1_3:-36151913 Msa0116790:CDS
GATCAATTTAGCAGTGCAGA+AGG 0.550258 1_3:-36150676 Msa0116790:CDS
AAAGATCTTCATGTGAATGT+TGG 0.550556 1_3:-36152005 Msa0116790:CDS
AATTGGTGAAGGTGAAGGGT+TGG 0.551021 1_3:-36152805 Msa0116790:CDS
AATTTCTTCAACTCATCACT+CGG 0.551834 1_3:+36152824 None:intergenic
AGTTCCAAAGACATTAGCCT+TGG 0.553282 1_3:+36151816 None:intergenic
CCGTCACCAATGTTTGCTCT+AGG 0.553357 1_3:+36151786 None:intergenic
TGATTAAGTATTTGGTTCTG+TGG 0.556491 1_3:-36151977 Msa0116790:CDS
CTGTTGGTTATCAGCAGCCA+AGG 0.556994 1_3:-36151833 Msa0116790:CDS
CAAAGATCGGTTTGGCCGAG+AGG 0.557674 1_3:-36152443 Msa0116790:CDS
ATGTGAAACTTACTGCCGCT+TGG 0.558320 1_3:-36151872 Msa0116790:CDS
CCGAAGGTTGCATTGCCTCA+GGG 0.559038 1_3:-36152242 Msa0116790:CDS
AGTAAGTTTCACATCCTTGT+CGG 0.561276 1_3:+36151881 None:intergenic
CTTCAACTAGTTTGGTGTGG+TGG 0.566078 1_3:+36153429 None:intergenic
CTATTGGAACTTACTACAAG+CGG 0.566905 1_3:-36150620 Msa0116790:CDS
TTATCAAATCGAATATCAAA+CGG 0.567778 1_3:+36152272 None:intergenic
GGTTACTTGTTTGGGTGTGT+CGG 0.569498 1_3:+36153386 None:intergenic
TTATCAGAATAATGGCTGAA+GGG 0.569902 1_3:-36149239 Msa0116790:CDS
TATCAGAATAATGGCTGAAG+GGG 0.570759 1_3:-36149238 Msa0116790:CDS
GGGAAACAGTTTATTCAGCA+GGG 0.570903 1_3:-36152359 Msa0116790:CDS
AGCTATGCAATGGCAGAGGA+GGG 0.571690 1_3:-36151912 Msa0116790:CDS
CAGCGGGCCTGTTGAACGCA+CGG 0.576027 1_3:-36151625 Msa0116790:CDS
GAACCTCGACTTCTCCGTAT+GGG 0.576994 1_3:-36153092 Msa0116790:CDS
TAATTGACTTGAAAGTGAGC+TGG 0.577756 1_3:+36149564 None:intergenic
AAGAAATTGGTGAAGGTGAA+GGG 0.578264 1_3:-36152809 Msa0116790:CDS
TTGGCCGAGAGGTTTGCCGT+TGG 0.578979 1_3:-36152432 Msa0116790:CDS
TCATAGATATGATAGGGTTG+AGG 0.580741 1_3:-36152048 Msa0116790:CDS
CTTTGCCCGAAATGAACATA+CGG 0.581045 1_3:+36152461 None:intergenic
TTTACACTCAGGTGTTTGGT+GGG 0.581224 1_3:-36152379 Msa0116790:CDS
TTATAGGGAAACATTGATTG+TGG 0.581383 1_3:-36148832 Msa0116790:three_prime_UTR
GTTGCCGTCTGTTCATCTTG+GGG 0.584264 1_3:-36151736 Msa0116790:CDS
AGAACCTCGACTTCTCCGTA+TGG 0.585282 1_3:-36153093 Msa0116790:CDS
CTATCATATCTATGAACAGT+AGG 0.586324 1_3:+36152056 None:intergenic
GCCTCAGGGTGTGATGATGC+CGG 0.590410 1_3:-36152228 Msa0116790:CDS
GTTATCTCAACAAGCAAGCA+TGG 0.594597 1_3:-36149610 Msa0116790:CDS
CGTAGATCTTGTTGTTCAGG+AGG 0.596144 1_3:-36151535 Msa0116790:CDS
AGGTGTGAGATAACAACAAG+TGG 0.599232 1_3:-36153458 Msa0116790:five_prime_UTR
CTTGGATTTGAGCTATGCAA+TGG 0.599337 1_3:-36151922 Msa0116790:CDS
TGGTGAAGGTGCTAGGCAAG+AGG 0.599388 1_3:-36152531 Msa0116790:CDS
CTGGGGACAACAATGCCGAC+TGG 0.599896 1_3:-36149632 Msa0116790:CDS
TGAGAGGTTATTGGGGACAG+AGG 0.600387 1_3:-36152118 Msa0116790:CDS
AGAAATAAACTGAATAAAAG+GGG 0.604349 1_3:+36148869 None:intergenic
AAGAAACATGTAATACACTT+GGG 0.605203 1_3:-36149146 Msa0116790:three_prime_UTR
TCTCAGAACTGCATAACAAG+AGG 0.608851 1_3:+36149514 None:intergenic
ATAAAGCAACCTCCATTCAA+GGG 0.609066 1_3:+36151602 None:intergenic
AACGCACGGCCCTTGAATGG+AGG 0.610127 1_3:-36151611 Msa0116790:CDS
GTGCTCATCATGCATTGCAG+CGG 0.613729 1_3:-36151642 Msa0116790:CDS
TGGATGAACAAGCGAATTTG+GGG 0.613883 1_3:-36152712 Msa0116790:CDS
CTTATCGGAGAAATGGATCG+TGG 0.614495 1_3:-36152864 Msa0116790:CDS
GATTGGTGATTCGAGAACTC+CGG 0.618148 1_3:-36152771 Msa0116790:CDS
CAATCTAGAGATCCATCAGA+AGG 0.618842 1_3:-36149433 Msa0116790:CDS
TAAAGAGTCGATGAATTAGT+CGG 0.622063 1_3:+36149324 None:intergenic
TCATATCTATGAACAGTAGG+TGG 0.622312 1_3:+36152059 None:intergenic
CAATCGCCGATAGAAATTCG+CGG 0.623883 1_3:-36152898 Msa0116790:CDS
TCCATTGAGACAAAGAACAT+AGG 0.624497 1_3:+36149402 None:intergenic
CCTTTCAAACTCCAATCCGC+CGG 0.626527 1_3:+36152752 None:intergenic
TTTCTGTCTCTCTGTCTGTG+TGG 0.626924 1_3:-36153335 Msa0116790:five_prime_UTR
ATTTCTTCAACTCATCACTC+GGG 0.628878 1_3:+36152825 None:intergenic
TTTGAGCTATGCAATGGCAG+AGG 0.629954 1_3:-36151916 Msa0116790:CDS
AAAACAGAAGACCAAGACTC+GGG 0.631408 1_3:+36149657 None:intergenic
TAAAACAGAAGACCAAGACT+CGG 0.634593 1_3:+36149656 None:intergenic
CAACTTCAACTAGTTTGGTG+TGG 0.635626 1_3:+36153426 None:intergenic
CCTAGAGCAAACATTGGTGA+CGG 0.639949 1_3:-36151786 Msa0116790:CDS
TAGGAAGAAAAGTGCTGCGA+CGG 0.642741 1_3:+36153021 None:intergenic
GGAAACAGTTTATTCAGCAG+GGG 0.643036 1_3:-36152358 Msa0116790:CDS
TGGTGATTCGAGAACTCCGG+CGG 0.650136 1_3:-36152768 Msa0116790:CDS
GGACCAAATATACAATAAAG+GGG 0.650966 1_3:+36149012 None:intergenic
CTCGAAACAAAGTAAAGCGG+CGG 0.651448 1_3:+36152982 None:intergenic
TATTTGTTTGCAATTCAACA+TGG 0.651854 1_3:-36152635 Msa0116790:CDS
ATGCCCATACGGAGAAGTCG+AGG 0.653724 1_3:+36153089 None:intergenic
GATTGTCTACTAGGTTAACA+AGG 0.654365 1_3:+36149451 None:intergenic
TAGAGGGGAAGTGATTGATG+GGG 0.654974 1_3:-36152585 Msa0116790:CDS
TCAACCCCAAGATGAACAGA+CGG 0.659344 1_3:+36151732 None:intergenic
ACATTGGTGACGGTGACCAG+AGG 0.665952 1_3:-36151776 Msa0116790:CDS
CATTGGTGACGGTGACCAGA+GGG 0.667314 1_3:-36151775 Msa0116790:CDS
TGAGTTGAAGAAATTGGTGA+AGG 0.667739 1_3:-36152816 Msa0116790:CDS
GGTTACGACGAGAAGAATGA+CGG 0.668817 1_3:+36153042 None:intergenic
GTTCTCGAAACAAAGTAAAG+CGG 0.672242 1_3:+36152979 None:intergenic
TAACAAATCCTGAAGCCAAG+CGG 0.680742 1_3:+36151857 None:intergenic
TGCTTGTTGAGATAACCAGT+CGG 0.682815 1_3:+36149617 None:intergenic
GGTCGTCCTAGAGCAAACAT+TGG 0.684728 1_3:-36151792 Msa0116790:CDS
ACCGGCATCATCACACCCTG+AGG 0.686158 1_3:+36152227 None:intergenic
CGGTGTCGCCAACGTTACGT+AGG 0.691901 1_3:+36153002 None:intergenic
AAGCGGATAAAACCAAACTG+TGG 0.694265 1_3:-36150603 Msa0116790:CDS
CACTCCATGGATGAACAGCA+GGG 0.698430 1_3:+36149289 None:intergenic
AGAGTCGATGAATTAGTCGG+AGG 0.700411 1_3:+36149327 None:intergenic
GGTTTGCCGTTGGAAAATGT+GGG 0.718853 1_3:-36152422 Msa0116790:CDS
AAATCACTAATTAAGCGCTG+AGG 0.719879 1_3:+36149480 None:intergenic
ACTTGGGTAAATCATCTACA+CGG 0.722737 1_3:-36149130 Msa0116790:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAAAATTATATCTAGT+AGG + chr1_3:36151571-36151590 None:intergenic 10.0%
!!! AACAATTTTGTAAAGATTTT+CGG + chr1_3:36149243-36149262 None:intergenic 15.0%
!!! CAATATAGTTTTAATAATTG+CGG - chr1_3:36150900-36150919 Msa0116790:intron 15.0%
!! TTTCATATTTAACGTATAAT+TGG + chr1_3:36151435-36151454 None:intergenic 15.0%
!! ATTAGAAATAAATCATGAAA+AGG - chr1_3:36151476-36151495 Msa0116790:intron 15.0%
!! TTAGAAATAAATCATGAAAA+GGG - chr1_3:36151477-36151496 Msa0116790:intron 15.0%
!!! CTAAATTGATCAAATATTTT+TGG + chr1_3:36151621-36151640 None:intergenic 15.0%
!! ATAATACAATTCTTAACTAT+TGG - chr1_3:36151670-36151689 Msa0116790:CDS 15.0%
!!! TTTTTTACATAACATATGAT+TGG + chr1_3:36152044-36152063 None:intergenic 15.0%
!! AAACATTATATTAACAACTT+AGG + chr1_3:36152075-36152094 None:intergenic 15.0%
!! AAAAGAAAAACATAAATACA+GGG + chr1_3:36152195-36152214 None:intergenic 15.0%
!! TAAAAGAAAAACATAAATAC+AGG + chr1_3:36152196-36152215 None:intergenic 15.0%
!! AAGATATGTGAAAATTATAA+AGG - chr1_3:36152414-36152433 Msa0116790:CDS 15.0%
!! AGATATGTGAAAATTATAAA+GGG - chr1_3:36152415-36152434 Msa0116790:CDS 15.0%
!!! TTTTATCTTCTAAAATTTGT+AGG - chr1_3:36153244-36153263 Msa0116790:five_prime_UTR 15.0%
!!! TTTATCTTCTAAAATTTGTA+GGG - chr1_3:36153245-36153264 Msa0116790:five_prime_UTR 15.0%
!!! TTTTTTGTGAAAATATGAAA+CGG - chr1_3:36153349-36153368 Msa0116790:five_prime_UTR 15.0%
!!! CTTTTTTTCAAATAAGGTTT+TGG + chr1_3:36149161-36149180 None:intergenic 20.0%
!!! AGATCACTTTTTTTCAAATA+AGG + chr1_3:36149167-36149186 None:intergenic 20.0%
!! TTATCAAATCGAATATCAAA+CGG + chr1_3:36150037-36150056 None:intergenic 20.0%
!! ATCGTATTAAAAGAATTAAC+CGG + chr1_3:36150100-36150119 None:intergenic 20.0%
!!! ATTTGGTATCAAATGTTTTA+TGG - chr1_3:36151056-36151075 Msa0116790:intron 20.0%
!!! TTTGGTATCAAATGTTTTAT+GGG - chr1_3:36151057-36151076 Msa0116790:intron 20.0%
!! CATATATTAATGTTAGCATA+TGG + chr1_3:36151255-36151274 None:intergenic 20.0%
!! ATGTTATGTAAAAAAGAGTT+TGG - chr1_3:36152049-36152068 Msa0116790:CDS 20.0%
!!! TTTTTTTCACTAAATCATGT+TGG - chr1_3:36152109-36152128 Msa0116790:CDS 20.0%
!! AAAGAAAAACATAAATACAG+GGG + chr1_3:36152194-36152213 None:intergenic 20.0%
!! CACTTAATAATAATCATTAG+AGG + chr1_3:36152289-36152308 None:intergenic 20.0%
!! AATGATTATTATTAAGTGTC+TGG - chr1_3:36152291-36152310 Msa0116790:CDS 20.0%
!!! TAATGTGTTCATTTTATGTA+TGG + chr1_3:36152378-36152397 None:intergenic 20.0%
!! TATTAAGCTTATCAGAATAA+TGG - chr1_3:36153059-36153078 Msa0116790:CDS 20.0%
!! ATAAAGGGGTAAAAAAAAAA+GGG + chr1_3:36153283-36153302 None:intergenic 20.0%
!! AATAAAGGGGTAAAAAAAAA+AGG + chr1_3:36153284-36153303 None:intergenic 20.0%
!!! CATATTTTCACAAAAAAGAA+AGG + chr1_3:36153346-36153365 None:intergenic 20.0%
!! AGAAATAAACTGAATAAAAG+GGG + chr1_3:36153440-36153459 None:intergenic 20.0%
!! CAGAAATAAACTGAATAAAA+GGG + chr1_3:36153441-36153460 None:intergenic 20.0%
!! TCTTTTTCTTTCTTCAATGT+TGG - chr1_3:36149088-36149107 Msa0116790:three_prime_UTR 25.0%
!!! TTCAAATAAGGTTTTGGATT+TGG + chr1_3:36149155-36149174 None:intergenic 25.0%
! TTCCTAACATAAGAATCATA+AGG + chr1_3:36149641-36149660 None:intergenic 25.0%
! TCTTATGTTAGGAAAATTGT+TGG - chr1_3:36149647-36149666 Msa0116790:CDS 25.0%
! CTTATGTTAGGAAAATTGTT+GGG - chr1_3:36149648-36149667 Msa0116790:CDS 25.0%
! TATTTGTTTGCAATTCAACA+TGG - chr1_3:36149671-36149690 Msa0116790:intron 25.0%
!!! GAAACATTTTGATGTTGAAT+TGG - chr1_3:36149751-36149770 Msa0116790:intron 25.0%
! ATAGTCATGATAATCCTAAT+AGG - chr1_3:36149810-36149829 Msa0116790:intron 25.0%
!!! ATTCTGTGTTTTATTTTACG+AGG - chr1_3:36149996-36150015 Msa0116790:intron 25.0%
!!! GTTTTATTTTACGAGGAAAT+CGG - chr1_3:36150003-36150022 Msa0116790:intron 25.0%
!!! TTTTATTTTACGAGGAAATC+GGG - chr1_3:36150004-36150023 Msa0116790:intron 25.0%
! TACTGTTCATAGATATGATA+GGG - chr1_3:36150252-36150271 Msa0116790:intron 25.0%
! AGATTGCTAATTTAATCAGA+TGG - chr1_3:36150620-36150639 Msa0116790:CDS 25.0%
! GTTGTATGCAAAATAAAACA+GGG + chr1_3:36150824-36150843 None:intergenic 25.0%
! AGTTGTATGCAAAATAAAAC+AGG + chr1_3:36150825-36150844 None:intergenic 25.0%
! ATTTGATACCAAATTGTGAA+GGG + chr1_3:36151050-36151069 None:intergenic 25.0%
! GATTAGAAATAAATGCTTCA+CGG + chr1_3:36151361-36151380 None:intergenic 25.0%
!!! ACTTTTTGATTGATCATGAA+AGG - chr1_3:36151388-36151407 Msa0116790:intron 25.0%
! ATATGAAAGTAGAGTTAAGA+TGG - chr1_3:36151447-36151466 Msa0116790:intron 25.0%
! AATACACTAGTACTTCAATA+AGG + chr1_3:36151527-36151546 None:intergenic 25.0%
!!! ATTGATCAAATATTTTTGGC+AGG + chr1_3:36151617-36151636 None:intergenic 25.0%
!!! AACGTTTTTTAAAACCAAAC+AGG + chr1_3:36151797-36151816 None:intergenic 25.0%
! TTGCAAATTAAAACAGAAAG+TGG + chr1_3:36151830-36151849 None:intergenic 25.0%
! TTGACTTTGATCAAATAATG+AGG + chr1_3:36152170-36152189 None:intergenic 25.0%
!! TTTGAAATAGTGCTCATTTA+GGG + chr1_3:36152231-36152250 None:intergenic 25.0%
!! ATTTGAAATAGTGCTCATTT+AGG + chr1_3:36152232-36152251 None:intergenic 25.0%
! ATAATCATTAGAGGCTTATT+TGG + chr1_3:36152280-36152299 None:intergenic 25.0%
! AATGCTATGTCTTTCAAAAA+TGG + chr1_3:36152492-36152511 None:intergenic 25.0%
! AATGCTATGTCTTTCAAAAA+TGG + chr1_3:36152492-36152511 None:intergenic 25.0%
!!! TAGATTGTTTTATCAAGAAC+AGG + chr1_3:36152949-36152968 None:intergenic 25.0%
!!! TAATTCATCGACTCTTTATT+CGG - chr1_3:36152987-36153006 Msa0116790:CDS 25.0%
! AAGAAACATGTAATACACTT+GGG - chr1_3:36153160-36153179 Msa0116790:CDS 25.0%
! TAAAGGGGTAAAAAAAAAAG+GGG + chr1_3:36153282-36153301 None:intergenic 25.0%
! TTACCCCTTTATTGTATATT+TGG - chr1_3:36153291-36153310 Msa0116790:five_prime_UTR 25.0%
! TGGACCAAATATACAATAAA+GGG + chr1_3:36153298-36153317 None:intergenic 25.0%
!! ACATTAATTCATTTTCTCTG+TGG + chr1_3:36153318-36153337 None:intergenic 25.0%
! GCAGAAATAAACTGAATAAA+AGG + chr1_3:36153442-36153461 None:intergenic 25.0%
TTGTTATCTCACACCTTATT+AGG + chr1_3:36148844-36148863 None:intergenic 30.0%
CAATACAACTTCAACTAGTT+TGG + chr1_3:36148888-36148907 None:intergenic 30.0%
TGAAGTTGTATTGAAGCTTA+AGG - chr1_3:36148895-36148914 Msa0116790:three_prime_UTR 30.0%
!!! AGTGTAAGTAGTTTTGTGTA+AGG + chr1_3:36148950-36148969 None:intergenic 30.0%
! TTTTTGTTCAACACTTGAAC+TGG - chr1_3:36149001-36149020 Msa0116790:three_prime_UTR 30.0%
! GAAAGAAAAAGAAGAAGTGT+TGG + chr1_3:36149080-36149099 None:intergenic 30.0%
!!! TAAGGTTTTGGATTTGGATT+TGG + chr1_3:36149149-36149168 None:intergenic 30.0%
GGTTCTTTGTATGAGTAAAA+CGG + chr1_3:36149199-36149218 None:intergenic 30.0%
AATTTCTTCAACTCATCACT+CGG + chr1_3:36149485-36149504 None:intergenic 30.0%
! AGGTTGTATCTTTTTGTCAT+TGG - chr1_3:36149574-36149593 Msa0116790:CDS 30.0%
TGCCTTATGATTCTTATGTT+AGG - chr1_3:36149636-36149655 Msa0116790:CDS 30.0%
! ATTTTTGATGCTGATGATAG+AGG - chr1_3:36149704-36149723 Msa0116790:intron 30.0%
! TTTTTGATGCTGATGATAGA+GGG - chr1_3:36149705-36149724 Msa0116790:intron 30.0%
!! CATTTTGATGTTGAATTGGT+TGG - chr1_3:36149755-36149774 Msa0116790:intron 30.0%
GTTAATCCGTATGTTCATTT+CGG - chr1_3:36149839-36149858 Msa0116790:intron 30.0%
TTAATCCGTATGTTCATTTC+GGG - chr1_3:36149840-36149859 Msa0116790:intron 30.0%
TAAAACACAGAATCAACATC+AGG + chr1_3:36149989-36150008 None:intergenic 30.0%
!!! TGATGTTTTGAGAGGTTATT+GGG - chr1_3:36150180-36150199 Msa0116790:intron 30.0%
CTATCATATCTATGAACAGT+AGG + chr1_3:36150253-36150272 None:intergenic 30.0%
CTACTGTTCATAGATATGAT+AGG - chr1_3:36150251-36150270 Msa0116790:intron 30.0%
AAAGATCTTCATGTGAATGT+TGG - chr1_3:36150301-36150320 Msa0116790:intron 30.0%
TGGTCGTTTGATTAAGTATT+TGG - chr1_3:36150321-36150340 Msa0116790:intron 30.0%
!! TGATTAAGTATTTGGTTCTG+TGG - chr1_3:36150329-36150348 Msa0116790:intron 30.0%
TAGATTGTTTGAGAAGATCT+TGG - chr1_3:36150366-36150385 Msa0116790:intron 30.0%
ATCAGATGGAGAAAAACTTT+CGG - chr1_3:36150634-36150653 Msa0116790:CDS 30.0%
!! GTTTTAATAATTGCGGTCTA+TGG - chr1_3:36150907-36150926 Msa0116790:intron 30.0%
!!! GGAATCATGGTTTTAAATTG+TGG + chr1_3:36150998-36151017 None:intergenic 30.0%
!!! TGTTCAGTTTTAGATTCATG+TGG + chr1_3:36151023-36151042 None:intergenic 30.0%
! CATGAATCTAAAACTGAACA+TGG - chr1_3:36151023-36151042 Msa0116790:intron 30.0%
CATTTGATACCAAATTGTGA+AGG + chr1_3:36151051-36151070 None:intergenic 30.0%
TTAGCATATGGTTAAAGTGA+TGG + chr1_3:36151243-36151262 None:intergenic 30.0%
AAATGCTTCACGGTAAAAAT+AGG + chr1_3:36151351-36151370 None:intergenic 30.0%
TGATTGATCATGAAAGGATT+TGG - chr1_3:36151394-36151413 Msa0116790:intron 30.0%
!!! TTTTTTCATTTCCTGTTTCC+AGG - chr1_3:36151589-36151608 Msa0116790:CDS 30.0%
TAAGAATTGTATTATCCTGC+AGG + chr1_3:36151665-36151684 None:intergenic 30.0%
!! TTTCTGTTGACTCAAATTAG+TGG - chr1_3:36151761-36151780 Msa0116790:CDS 30.0%
GAGACAAAATGAAAGTAAGA+AGG + chr1_3:36151864-36151883 None:intergenic 30.0%
GTGAACACAGATAATGAAAT+CGG - chr1_3:36151897-36151916 Msa0116790:CDS 30.0%
! GTTGTTGAAGATTTTGTATG+AGG + chr1_3:36151986-36152005 None:intergenic 30.0%
TAAATACATTCGTATACGCA+AGG - chr1_3:36152337-36152356 Msa0116790:CDS 30.0%
AAATACATTCGTATACGCAA+GGG - chr1_3:36152338-36152357 Msa0116790:CDS 30.0%
CATTAACTCTTAAAACTCCA+CGG - chr1_3:36152508-36152527 Msa0116790:CDS 30.0%
TAAAGAGTCGATGAATTAGT+CGG + chr1_3:36152985-36153004 None:intergenic 30.0%
TTATCAGAATAATGGCTGAA+GGG - chr1_3:36153067-36153086 Msa0116790:CDS 30.0%
CAAGTGTATTACATGTTTCT+TGG + chr1_3:36153161-36153180 None:intergenic 30.0%
CAAGAAACATGTAATACACT+TGG - chr1_3:36153159-36153178 Msa0116790:CDS 30.0%
!!! CACTATTTTTGATTGAGAAG+AGG + chr1_3:36153202-36153221 None:intergenic 30.0%
!! ATCTTCTAAAATTTGTAGGG+TGG - chr1_3:36153248-36153267 Msa0116790:five_prime_UTR 30.0%
GGACCAAATATACAATAAAG+GGG + chr1_3:36153297-36153316 None:intergenic 30.0%
GTGGACCAAATATACAATAA+AGG + chr1_3:36153299-36153318 None:intergenic 30.0%
! CCATTGAGAGATTCTTTTTA+CGG - chr1_3:36153408-36153427 Msa0116790:five_prime_UTR 30.0%
TGCATGAAGAACATCTTATA+GGG - chr1_3:36153459-36153478 Msa0116790:five_prime_UTR 30.0%
! TTATAGGGAAACATTGATTG+TGG - chr1_3:36153474-36153493 Msa0116790:five_prime_UTR 30.0%
ATGTGAAACACCACCTAATA+AGG - chr1_3:36148828-36148847 Msa0116790:three_prime_UTR 35.0%
TTATCTCACACCTTATTAGG+TGG + chr1_3:36148841-36148860 None:intergenic 35.0%
AAGGTTGAGGTTACTTGTTT+GGG + chr1_3:36148931-36148950 None:intergenic 35.0%
TAAGGTTGAGGTTACTTGTT+TGG + chr1_3:36148932-36148951 None:intergenic 35.0%
!!! AGTAGTTTTGTGTAAGGTTG+AGG + chr1_3:36148944-36148963 None:intergenic 35.0%
!!! GAAGTGTTGGTTTGTGTTTT+TGG + chr1_3:36149067-36149086 None:intergenic 35.0%
GGATTTGGATTTGGATTTGA+TGG + chr1_3:36149140-36149159 None:intergenic 35.0%
GTATGAGTAAAACGGTTTGT+AGG + chr1_3:36149191-36149210 None:intergenic 35.0%
GTTCTCGAAACAAAGTAAAG+CGG + chr1_3:36149330-36149349 None:intergenic 35.0%
CCATTTCTCCGATAAGAAAT+TGG + chr1_3:36149438-36149457 None:intergenic 35.0%
CCAATTTCTTATCGGAGAAA+TGG - chr1_3:36149435-36149454 Msa0116790:CDS 35.0%
ATTTCTTCAACTCATCACTC+GGG + chr1_3:36149484-36149503 None:intergenic 35.0%
! GAGTGATGAGTTGAAGAAAT+TGG - chr1_3:36149484-36149503 Msa0116790:CDS 35.0%
! TGAGTTGAAGAAATTGGTGA+AGG - chr1_3:36149490-36149509 Msa0116790:CDS 35.0%
AAGAAATTGGTGAAGGTGAA+GGG - chr1_3:36149497-36149516 Msa0116790:CDS 35.0%
ATTGGATGAACAAGCGAATT+TGG - chr1_3:36149592-36149611 Msa0116790:CDS 35.0%
TTGGATGAACAAGCGAATTT+GGG - chr1_3:36149593-36149612 Msa0116790:CDS 35.0%
! TTTTGATGCTGATGATAGAG+GGG - chr1_3:36149706-36149725 Msa0116790:intron 35.0%
GGATTAACAACAGTCCTATT+AGG + chr1_3:36149827-36149846 None:intergenic 35.0%
!! TGTATCATTCACCTGCTTTT+TGG - chr1_3:36150119-36150138 Msa0116790:intron 35.0%
!!! GTATCATTCACCTGCTTTTT+GGG - chr1_3:36150120-36150139 Msa0116790:intron 35.0%
!!! CTGATGTTTTGAGAGGTTAT+TGG - chr1_3:36150179-36150198 Msa0116790:intron 35.0%
!!! GATGTTTTGAGAGGTTATTG+GGG - chr1_3:36150181-36150200 Msa0116790:intron 35.0%
TCATATCTATGAACAGTAGG+TGG + chr1_3:36150250-36150269 None:intergenic 35.0%
TCATAGATATGATAGGGTTG+AGG - chr1_3:36150258-36150277 Msa0116790:intron 35.0%
! AGATCTTTCTCCTCTGAAAA+GGG + chr1_3:36150289-36150308 None:intergenic 35.0%
! AAGATCTTTCTCCTCTGAAA+AGG + chr1_3:36150290-36150309 None:intergenic 35.0%
AGTAAGTTTCACATCCTTGT+CGG + chr1_3:36150428-36150447 None:intergenic 35.0%
TCAGATGGAGAAAAACTTTC+GGG - chr1_3:36150635-36150654 Msa0116790:CDS 35.0%
ATAAAGCAACCTCCATTCAA+GGG + chr1_3:36150707-36150726 None:intergenic 35.0%
! TTGAATGGAGGTTGCTTTAT+GGG - chr1_3:36150707-36150726 Msa0116790:intron 35.0%
!!! CAGAAGTGTCGTTATTTTGT+CGG - chr1_3:36150738-36150757 Msa0116790:intron 35.0%
!! CGTTATTTTGTCGGAAAAGA+AGG - chr1_3:36150747-36150766 Msa0116790:intron 35.0%
TTAATAATTGCGGTCTATGG+CGG - chr1_3:36150910-36150929 Msa0116790:intron 35.0%
!!! CAATTTTGGCTGCAAAATAG+AGG + chr1_3:36150965-36150984 None:intergenic 35.0%
!!! CAGTTTTAGATTCATGTGGA+TGG + chr1_3:36151019-36151038 None:intergenic 35.0%
TCTTCAAAAGTTTCCATTGG+TGG + chr1_3:36151306-36151325 None:intergenic 35.0%
TGCTCTTCAAAAGTTTCCAT+TGG + chr1_3:36151309-36151328 None:intergenic 35.0%
! GAAAGGATTTGGAATAGAGA+TGG - chr1_3:36151405-36151424 Msa0116790:intron 35.0%
TCATGAAAAGGGAATTGTAG+AGG - chr1_3:36151488-36151507 Msa0116790:intron 35.0%
CATGAAAAGGGAATTGTAGA+GGG - chr1_3:36151489-36151508 Msa0116790:intron 35.0%
!!! AAATATTTTTGGCAGGTACC+TGG + chr1_3:36151610-36151629 None:intergenic 35.0%
! AGAAGGATTTTTATTCCTGC+AGG - chr1_3:36151647-36151666 Msa0116790:CDS 35.0%
CTATTGGAACTTACTACAAG+CGG - chr1_3:36151686-36151705 Msa0116790:CDS 35.0%
CTTATTAGTGATCCACAGTT+TGG + chr1_3:36151718-36151737 None:intergenic 35.0%
CAAACTGTGGATCACTAATA+AGG - chr1_3:36151716-36151735 Msa0116790:CDS 35.0%
ATCATGCAAACACAAGAACT+GGG + chr1_3:36151948-36151967 None:intergenic 35.0%
TATCATGCAAACACAAGAAC+TGG + chr1_3:36151949-36151968 None:intergenic 35.0%
! AAGATTTTGTATGAGGAGGA+GGG + chr1_3:36151979-36151998 None:intergenic 35.0%
! GTTGAAGATTTTGTATGAGG+AGG + chr1_3:36151983-36152002 None:intergenic 35.0%
GGATAATGATTCTGTATCTG+CGG + chr1_3:36152023-36152042 None:intergenic 35.0%
TATAAAGGGTCCTCAGAAAA+AGG - chr1_3:36152429-36152448 Msa0116790:CDS 35.0%
! GGAAGAAGTGCGTATAAAAA+GGG - chr1_3:36152454-36152473 Msa0116790:CDS 35.0%
! GGAAGAAGTGCGTATAAAAA+GGG - chr1_3:36152454-36152473 Msa0116790:CDS 35.0%
TAAAACAGAAGACCAAGACT+CGG + chr1_3:36152653-36152672 None:intergenic 35.0%
!!! TCTTGGTCTTCTGTTTTAAC+TGG - chr1_3:36152655-36152674 Msa0116790:CDS 35.0%
!!! CTTGGTCTTCTGTTTTAACT+GGG - chr1_3:36152656-36152675 Msa0116790:CDS 35.0%
!!! TTGGTCTTCTGTTTTAACTG+GGG - chr1_3:36152657-36152676 Msa0116790:CDS 35.0%
!! TAATTGACTTGAAAGTGAGC+TGG + chr1_3:36152745-36152764 None:intergenic 35.0%
! AAATCACTAATTAAGCGCTG+AGG + chr1_3:36152829-36152848 None:intergenic 35.0%
GATTGTCTACTAGGTTAACA+AGG + chr1_3:36152858-36152877 None:intergenic 35.0%
TCCTATGTTCTTTGTCTCAA+TGG - chr1_3:36152903-36152922 Msa0116790:CDS 35.0%
TCCATTGAGACAAAGAACAT+AGG + chr1_3:36152907-36152926 None:intergenic 35.0%
CTTATCAGAATAATGGCTGA+AGG - chr1_3:36153066-36153085 Msa0116790:CDS 35.0%
TATCAGAATAATGGCTGAAG+GGG - chr1_3:36153068-36153087 Msa0116790:CDS 35.0%
CCTTTCAAACCAATTCCATT+AGG + chr1_3:36153101-36153120 None:intergenic 35.0%
!! CCTAATGGAATTGGTTTGAA+AGG - chr1_3:36153098-36153117 Msa0116790:CDS 35.0%
! CTGTTTCTTAATACTAGCTC+AGG - chr1_3:36153127-36153146 Msa0116790:CDS 35.0%
ACTTGGGTAAATCATCTACA+CGG - chr1_3:36153176-36153195 Msa0116790:CDS 35.0%
CCGTAAAAAGAATCTCTCAA+TGG + chr1_3:36153411-36153430 None:intergenic 35.0%
CTGCATGAAGAACATCTTAT+AGG - chr1_3:36153458-36153477 Msa0116790:five_prime_UTR 35.0%
AGGTGTGAGATAACAACAAG+TGG - chr1_3:36148848-36148867 Msa0116790:three_prime_UTR 40.0%
! CAACTTCAACTAGTTTGGTG+TGG + chr1_3:36148883-36148902 None:intergenic 40.0%
TTTGAGCTGAAGAATGCTCT+TGG + chr1_3:36149115-36149134 None:intergenic 40.0%
! AAGATTTTCGGATGCCCATA+CGG + chr1_3:36149231-36149250 None:intergenic 40.0%
! CTTTTCTTCCTACGTAACGT+TGG - chr1_3:36149296-36149315 Msa0116790:CDS 40.0%
GAAGAAATTGGTGAAGGTGA+AGG - chr1_3:36149496-36149515 Msa0116790:CDS 40.0%
TGGATGAACAAGCGAATTTG+GGG - chr1_3:36149594-36149613 Msa0116790:CDS 40.0%
! AACAAGCGAATTTGGGGTTT+AGG - chr1_3:36149600-36149619 Msa0116790:CDS 40.0%
! ACAAGCGAATTTGGGGTTTA+GGG - chr1_3:36149601-36149620 Msa0116790:CDS 40.0%
ATAGAGGGGAAGTGATTGAT+GGG - chr1_3:36149720-36149739 Msa0116790:intron 40.0%
GAAGTGATTGATGGGGATTT+GGG - chr1_3:36149728-36149747 Msa0116790:intron 40.0%
AAGTGATTGATGGGGATTTG+GGG - chr1_3:36149729-36149748 Msa0116790:intron 40.0%
!! GATGTTGAATTGGTTGGTGA+AGG - chr1_3:36149761-36149780 Msa0116790:intron 40.0%
CTTTGCCCGAAATGAACATA+CGG + chr1_3:36149848-36149867 None:intergenic 40.0%
TGTTCATTTCGGGCAAAGAT+CGG - chr1_3:36149850-36149869 Msa0116790:intron 40.0%
! ATCTCACCCACATTTTCCAA+CGG + chr1_3:36149893-36149912 None:intergenic 40.0%
TTGGAAAATGTGGGTGAGAT+TGG - chr1_3:36149893-36149912 Msa0116790:intron 40.0%
TGGAAAATGTGGGTGAGATT+GGG - chr1_3:36149894-36149913 Msa0116790:intron 40.0%
! GCATGAAGAGTTTTACACTC+AGG - chr1_3:36149916-36149935 Msa0116790:intron 40.0%
! GAGTTTTACACTCAGGTGTT+TGG - chr1_3:36149923-36149942 Msa0116790:intron 40.0%
! TTTTACACTCAGGTGTTTGG+TGG - chr1_3:36149926-36149945 Msa0116790:intron 40.0%
TTTACACTCAGGTGTTTGGT+GGG - chr1_3:36149927-36149946 Msa0116790:intron 40.0%
TGGGAAACAGTTTATTCAGC+AGG - chr1_3:36149946-36149965 Msa0116790:intron 40.0%
GGGAAACAGTTTATTCAGCA+GGG - chr1_3:36149947-36149966 Msa0116790:intron 40.0%
GGAAACAGTTTATTCAGCAG+GGG - chr1_3:36149948-36149967 Msa0116790:intron 40.0%
! TTTTACGAGGAAATCGGGTT+TGG - chr1_3:36150009-36150028 Msa0116790:intron 40.0%
!! TTTTTGGGCTTTGATGCTTC+CGG - chr1_3:36150135-36150154 Msa0116790:intron 40.0%
!! ATGGCTTCTGATGTTTTGAG+AGG - chr1_3:36150172-36150191 Msa0116790:intron 40.0%
!! GTATTTGGTTCTGTGGAGAT+CGG - chr1_3:36150336-36150355 Msa0116790:intron 40.0%
CTTGGATTTGAGCTATGCAA+TGG - chr1_3:36150384-36150403 Msa0116790:intron 40.0%
TAACAAATCCTGAAGCCAAG+CGG + chr1_3:36150452-36150471 None:intergenic 40.0%
!! CTTCAGGATTTGTTAGCTGT+TGG - chr1_3:36150457-36150476 Msa0116790:intron 40.0%
! AGTTCCAAAGACATTAGCCT+TGG + chr1_3:36150493-36150512 None:intergenic 40.0%
!! AGGCTAATGTCTTTGGAACT+TGG - chr1_3:36150493-36150512 Msa0116790:intron 40.0%
CATAAAGCAACCTCCATTCA+AGG + chr1_3:36150708-36150727 None:intergenic 40.0%
! CTTGAATGGAGGTTGCTTTA+TGG - chr1_3:36150706-36150725 Msa0116790:intron 40.0%
ACTTGTATGCTTGGTCCAAA+TGG + chr1_3:36150798-36150817 None:intergenic 40.0%
ACTAAGCTGCGTATTAGTGA+TGG - chr1_3:36150873-36150892 Msa0116790:intron 40.0%
GATTCATGTGGATGGAATCA+TGG + chr1_3:36151011-36151030 None:intergenic 40.0%
AACATGGACCCTTCACAATT+TGG - chr1_3:36151039-36151058 Msa0116790:intron 40.0%
TTATGGGCAATAGAAGACTG+AGG - chr1_3:36151073-36151092 Msa0116790:intron 40.0%
AAAAGGGAATTGTAGAGGGA+AGG - chr1_3:36151493-36151512 Msa0116790:intron 40.0%
GATCAATTTAGCAGTGCAGA+AGG - chr1_3:36151630-36151649 Msa0116790:CDS 40.0%
AAGCGGATAAAACCAAACTG+TGG - chr1_3:36151703-36151722 Msa0116790:CDS 40.0%
! AGATTTTGTATGAGGAGGAG+GGG + chr1_3:36151978-36151997 None:intergenic 40.0%
! GAAGATTTTGTATGAGGAGG+AGG + chr1_3:36151980-36151999 None:intergenic 40.0%
TAGTGCTCATTTAGGGACAA+AGG + chr1_3:36152224-36152243 None:intergenic 40.0%
!!! CGTATACGCAAGGGTATTTT+AGG - chr1_3:36152347-36152366 Msa0116790:CDS 40.0%
! CGGAAGAAGTGCGTATAAAA+AGG - chr1_3:36152453-36152472 Msa0116790:CDS 40.0%
GTGCGTATAAAAAGGGATAG+AGG - chr1_3:36152461-36152480 Msa0116790:CDS 40.0%
! TTTTATACGCACTTCTTCCG+TGG + chr1_3:36152453-36152472 None:intergenic 40.0%
! CGGAAGAAGTGCGTATAAAA+AGG - chr1_3:36152453-36152472 Msa0116790:CDS 40.0%
GTGCGTATAAAAAGGGATAG+AGG - chr1_3:36152461-36152480 Msa0116790:CDS 40.0%
AGAGGGAAAATGAAAGCTAG+TGG + chr1_3:36152603-36152622 None:intergenic 40.0%
! CTTTCATTTTCCCTCTCTGA+CGG - chr1_3:36152607-36152626 Msa0116790:CDS 40.0%
AAAACAGAAGACCAAGACTC+GGG + chr1_3:36152652-36152671 None:intergenic 40.0%
! TGCTTGTTGAGATAACCAGT+CGG + chr1_3:36152692-36152711 None:intergenic 40.0%
GTTATCTCAACAAGCAAGCA+TGG - chr1_3:36152696-36152715 Msa0116790:CDS 40.0%
ACAAGCAAGCATGGTACAAA+AGG - chr1_3:36152705-36152724 Msa0116790:CDS 40.0%
TCTCAGAACTGCATAACAAG+AGG + chr1_3:36152795-36152814 None:intergenic 40.0%
GGATCTCTAGATTGTCTACT+AGG + chr1_3:36152867-36152886 None:intergenic 40.0%
CAATCTAGAGATCCATCAGA+AGG - chr1_3:36152873-36152892 Msa0116790:CDS 40.0%
TAGGAATTGCAACCTTCTGA+TGG + chr1_3:36152888-36152907 None:intergenic 40.0%
CAAACCAATTCCATTAGGAG+TGG + chr1_3:36153096-36153115 None:intergenic 40.0%
!! CTTCAACTAGTTTGGTGTGG+TGG + chr1_3:36148880-36148899 None:intergenic 45.0%
GGTTACTTGTTTGGGTGTGT+CGG + chr1_3:36148923-36148942 None:intergenic 45.0%
TTTCTGTCTCTCTGTCTGTG+TGG - chr1_3:36148971-36148990 Msa0116790:three_prime_UTR 45.0%
GGTTACGACGAGAAGAATGA+CGG + chr1_3:36149267-36149286 None:intergenic 45.0%
!! TAGGAAGAAAAGTGCTGCGA+CGG + chr1_3:36149288-36149307 None:intergenic 45.0%
CTCGAAACAAAGTAAAGCGG+CGG + chr1_3:36149327-36149346 None:intergenic 45.0%
! ATTTTGTTCCAATCGACGCG+TGG + chr1_3:36149383-36149402 None:intergenic 45.0%
CAATCGCCGATAGAAATTCG+CGG - chr1_3:36149408-36149427 Msa0116790:CDS 45.0%
GCGGTACGCCAATTTCTTAT+CGG - chr1_3:36149427-36149446 Msa0116790:CDS 45.0%
CTTATCGGAGAAATGGATCG+TGG - chr1_3:36149442-36149461 Msa0116790:CDS 45.0%
GGAGAAATGGATCGTGGTTT+CGG - chr1_3:36149448-36149467 Msa0116790:CDS 45.0%
ATGGATCGTGGTTTCGGTTT+CGG - chr1_3:36149454-36149473 Msa0116790:CDS 45.0%
AATTGGTGAAGGTGAAGGGT+TGG - chr1_3:36149501-36149520 Msa0116790:CDS 45.0%
! GATTGGTGATTCGAGAACTC+CGG - chr1_3:36149535-36149554 Msa0116790:CDS 45.0%
GATAGAGGGGAAGTGATTGA+TGG - chr1_3:36149719-36149738 Msa0116790:intron 45.0%
TAGAGGGGAAGTGATTGATG+GGG - chr1_3:36149721-36149740 Msa0116790:intron 45.0%
GGAAGTGATTGATGGGGATT+TGG - chr1_3:36149727-36149746 Msa0116790:intron 45.0%
!! AATTGGTTGGTGAAGGTGCT+AGG - chr1_3:36149768-36149787 Msa0116790:intron 45.0%
ATTTCGGGCAAAGATCGGTT+TGG - chr1_3:36149855-36149874 Msa0116790:intron 45.0%
! TTTTCCAACGGCAAACCTCT+CGG + chr1_3:36149881-36149900 None:intergenic 45.0%
AGGTTTGCCGTTGGAAAATG+TGG - chr1_3:36149883-36149902 Msa0116790:intron 45.0%
GGTTTGCCGTTGGAAAATGT+GGG - chr1_3:36149884-36149903 Msa0116790:intron 45.0%
ATTCAGCAGGGGATTTCGAA+TGG - chr1_3:36149959-36149978 Msa0116790:intron 45.0%
ATTTGATAAGCATGCGCCGA+AGG - chr1_3:36150048-36150067 Msa0116790:intron 45.0%
AGCATCAAAGCCCAAAAAGC+AGG + chr1_3:36150133-36150152 None:intergenic 45.0%
! TGAGGCTTATCCCTTTTCAG+AGG - chr1_3:36150276-36150295 Msa0116790:intron 45.0%
TTTGAGCTATGCAATGGCAG+AGG - chr1_3:36150390-36150409 Msa0116790:intron 45.0%
ATGTGAAACTTACTGCCGCT+TGG - chr1_3:36150434-36150453 Msa0116790:intron 45.0%
CCTAGAGCAAACATTGGTGA+CGG - chr1_3:36150520-36150539 Msa0116790:intron 45.0%
TTTGTGGGATAAACTCCCTC+TGG + chr1_3:36150549-36150568 None:intergenic 45.0%
! GAACAGACGGCAACTTTTGT+GGG + chr1_3:36150564-36150583 None:intergenic 45.0%
! TGAACAGACGGCAACTTTTG+TGG + chr1_3:36150565-36150584 None:intergenic 45.0%
AAGTTGCCGTCTGTTCATCT+TGG - chr1_3:36150568-36150587 Msa0116790:intron 45.0%
AGTTGCCGTCTGTTCATCTT+GGG - chr1_3:36150569-36150588 Msa0116790:intron 45.0%
TCAACCCCAAGATGAACAGA+CGG + chr1_3:36150577-36150596 None:intergenic 45.0%
CATCTTGGGGTTGAAGAAAC+AGG - chr1_3:36150583-36150602 Msa0116790:intron 45.0%
!! GGACGTAGATCTTGTTGTTC+AGG - chr1_3:36150768-36150787 Msa0116790:intron 45.0%
!! CGTAGATCTTGTTGTTCAGG+AGG - chr1_3:36150771-36150790 Msa0116790:intron 45.0%
TGTTGTTCAGGAGGTCCATT+TGG - chr1_3:36150780-36150799 Msa0116790:intron 45.0%
ACAGGGCTTACTTGTATGCT+TGG + chr1_3:36150807-36150826 None:intergenic 45.0%
!! GGATTTTGATGTCGCTGCAA+TGG + chr1_3:36150944-36150963 None:intergenic 45.0%
TGCAGCCAAAATTGCAGTTG+TGG - chr1_3:36150971-36150990 Msa0116790:intron 45.0%
! GTGGTCCACAACTGCAATTT+TGG + chr1_3:36150979-36150998 None:intergenic 45.0%
GTGGATACTTAGCTCCTGTT+TGG - chr1_3:36151780-36151799 Msa0116790:CDS 45.0%
! CACAAGAACTGGGCTTGTTT+GGG + chr1_3:36151938-36151957 None:intergenic 45.0%
! ACACAAGAACTGGGCTTGTT+TGG + chr1_3:36151939-36151958 None:intergenic 45.0%
AAGGGTCCTCAGAAAAAGGA+CGG - chr1_3:36152433-36152452 Msa0116790:CDS 45.0%
! CTTCTTCCGTCCTTTTTCTG+AGG + chr1_3:36152442-36152461 None:intergenic 45.0%
AGAGTCGATGAATTAGTCGG+AGG + chr1_3:36152982-36153001 None:intergenic 45.0%
TGCTCACTTGATACACTCCA+TGG + chr1_3:36153033-36153052 None:intergenic 45.0%
GGATCCACTCCTAATGGAAT+TGG - chr1_3:36153089-36153108 Msa0116790:CDS 45.0%
AGAACCTCGACTTCTCCGTA+TGG - chr1_3:36149213-36149232 Msa0116790:CDS 50.0%
GAACCTCGACTTCTCCGTAT+GGG - chr1_3:36149214-36149233 Msa0116790:CDS 50.0%
CGCGAATTTCTATCGGCGAT+TGG + chr1_3:36149410-36149429 None:intergenic 50.0%
GGCGTACCGCGAATTTCTAT+CGG + chr1_3:36149417-36149436 None:intergenic 50.0%
TGGATCGTGGTTTCGGTTTC+GGG - chr1_3:36149455-36149474 Msa0116790:CDS 50.0%
CCTTTCAAACTCCAATCCGC+CGG + chr1_3:36149557-36149576 None:intergenic 50.0%
! GGCTTTGATGCTTCCGGTTT+CGG - chr1_3:36150141-36150160 Msa0116790:intron 50.0%
TGCTTCCGGTTTCGGTTAGT+AGG - chr1_3:36150149-36150168 Msa0116790:intron 50.0%
TCCGGTTTCGGTTAGTAGGA+TGG - chr1_3:36150153-36150172 Msa0116790:intron 50.0%
GCCATCCTACTAACCGAAAC+CGG + chr1_3:36150157-36150176 None:intergenic 50.0%
TGAGAGGTTATTGGGGACAG+AGG - chr1_3:36150188-36150207 Msa0116790:intron 50.0%
ATTGGGGACAGAGGCTTCTT+TGG - chr1_3:36150197-36150216 Msa0116790:intron 50.0%
TTGGGGACAGAGGCTTCTTT+GGG - chr1_3:36150198-36150217 Msa0116790:intron 50.0%
! CAGAGGCTTCTTTGGGAAGT+TGG - chr1_3:36150205-36150224 Msa0116790:intron 50.0%
! AGGCTTCTTTGGGAAGTTGG+TGG - chr1_3:36150208-36150227 Msa0116790:intron 50.0%
AGCTATGCAATGGCAGAGGA+GGG - chr1_3:36150394-36150413 Msa0116790:intron 50.0%
! CAATGGCAGAGGAGGGTTTT+TGG - chr1_3:36150401-36150420 Msa0116790:intron 50.0%
! CTGTTGGTTATCAGCAGCCA+AGG - chr1_3:36150473-36150492 Msa0116790:intron 50.0%
GCAGCCAAGGCTAATGTCTT+TGG - chr1_3:36150486-36150505 Msa0116790:intron 50.0%
GGTCGTCCTAGAGCAAACAT+TGG - chr1_3:36150514-36150533 Msa0116790:intron 50.0%
CCGTCACCAATGTTTGCTCT+AGG + chr1_3:36150523-36150542 None:intergenic 50.0%
GTTGCCGTCTGTTCATCTTG+GGG - chr1_3:36150570-36150589 Msa0116790:intron 50.0%
GTGCTCATCATGCATTGCAG+CGG - chr1_3:36150664-36150683 Msa0116790:CDS 50.0%
TGCTCATCATGCATTGCAGC+GGG - chr1_3:36150665-36150684 Msa0116790:CDS 50.0%
ACAGCATGACTCACCACCAA+TGG - chr1_3:36151290-36151309 Msa0116790:intron 50.0%
TTTGGCAGGTACCTGGAAAC+AGG + chr1_3:36151603-36151622 None:intergenic 50.0%
!! TCCCTCTCTGACGGATTCAT+TGG - chr1_3:36152616-36152635 Msa0116790:CDS 50.0%
CCCAATGAATCCGTCAGAGA+GGG + chr1_3:36152620-36152639 None:intergenic 50.0%
!! CCCTCTCTGACGGATTCATT+GGG - chr1_3:36152617-36152636 Msa0116790:CDS 50.0%
TCCCAATGAATCCGTCAGAG+AGG + chr1_3:36152621-36152640 None:intergenic 50.0%
!! TGACGGATTCATTGGGATCC+AGG - chr1_3:36152624-36152643 Msa0116790:CDS 50.0%
AAGTCCCTGCTGTTCATCCA+TGG - chr1_3:36153013-36153032 Msa0116790:CDS 50.0%
CACTCCATGGATGAACAGCA+GGG + chr1_3:36153020-36153039 None:intergenic 50.0%
ACACTCCATGGATGAACAGC+AGG + chr1_3:36153021-36153040 None:intergenic 50.0%
TGAAGGGGATCCACTCCTAA+TGG - chr1_3:36153083-36153102 Msa0116790:CDS 50.0%
ATGCCCATACGGAGAAGTCG+AGG + chr1_3:36149220-36149239 None:intergenic 55.0%
! TCGAGTATCCACGCGTCGAT+TGG - chr1_3:36149372-36149391 Msa0116790:CDS 55.0%
TGGTGATTCGAGAACTCCGG+CGG - chr1_3:36149538-36149557 Msa0116790:CDS 55.0%
ATTCGAGAACTCCGGCGGAT+TGG - chr1_3:36149543-36149562 Msa0116790:CDS 55.0%
!! CCGGCGGATTGGAGTTTGAA+AGG - chr1_3:36149554-36149573 Msa0116790:CDS 55.0%
!! TGGTGAAGGTGCTAGGCAAG+AGG - chr1_3:36149775-36149794 Msa0116790:intron 55.0%
!! CAAAGATCGGTTTGGCCGAG+AGG - chr1_3:36149863-36149882 Msa0116790:intron 55.0%
CCCTGAGGCAATGCAACCTT+CGG + chr1_3:36150067-36150086 None:intergenic 55.0%
CCGAAGGTTGCATTGCCTCA+GGG - chr1_3:36150064-36150083 Msa0116790:intron 55.0%
GAGCTATGCAATGGCAGAGG+AGG - chr1_3:36150393-36150412 Msa0116790:intron 55.0%
!! GGAGGGTTTTTGGACCGACA+AGG - chr1_3:36150411-36150430 Msa0116790:intron 55.0%
! ACTTACTGCCGCTTGGCTTC+AGG - chr1_3:36150441-36150460 Msa0116790:intron 55.0%
!! ACATTGGTGACGGTGACCAG+AGG - chr1_3:36150530-36150549 Msa0116790:intron 55.0%
!! CATTGGTGACGGTGACCAGA+GGG - chr1_3:36150531-36150550 Msa0116790:intron 55.0%
TTGAACGCACGGCCCTTGAA+TGG - chr1_3:36150692-36150711 Msa0116790:CDS 55.0%
AAGACCAAGACTCGGGTACC+TGG + chr1_3:36152645-36152664 None:intergenic 55.0%
!! CGGTGTCGCCAACGTTACGT+AGG + chr1_3:36149307-36149326 None:intergenic 60.0%
! GGTGAAGGTGAAGGGTTGGC+AGG - chr1_3:36149505-36149524 Msa0116790:CDS 60.0%
! GGTGAAGGGTTGGCAGGTTG+TGG - chr1_3:36149511-36149530 Msa0116790:CDS 60.0%
GGTTGGCAGGTTGTGGCGAT+TGG - chr1_3:36149518-36149537 Msa0116790:CDS 60.0%
TTGGCCGAGAGGTTTGCCGT+TGG - chr1_3:36149874-36149893 Msa0116790:intron 60.0%
GCCGAAGGTTGCATTGCCTC+AGG - chr1_3:36150063-36150082 Msa0116790:intron 60.0%
! GCCTCAGGGTGTGATGATGC+CGG - chr1_3:36150078-36150097 Msa0116790:intron 60.0%
ACCGGCATCATCACACCCTG+AGG + chr1_3:36150082-36150101 None:intergenic 60.0%
TCAAGGGCCGTGCGTTCAAC+AGG + chr1_3:36150691-36150710 None:intergenic 60.0%
AACGCACGGCCCTTGAATGG+AGG - chr1_3:36150695-36150714 Msa0116790:CDS 60.0%
GGATCCAGGTACCCGAGTCT+TGG - chr1_3:36152638-36152657 Msa0116790:CDS 60.0%
CTGGGGACAACAATGCCGAC+TGG - chr1_3:36152674-36152693 Msa0116790:CDS 60.0%
CAGCGGGCCTGTTGAACGCA+CGG - chr1_3:36150681-36150700 Msa0116790:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 36148817 36153511 36148817 ID=Msa0116790;Name=Msa0116790
chr1_3 mRNA 36148817 36153511 36148817 ID=Msa0116790-mRNA-1;Parent=Msa0116790;Name=Msa0116790-mRNA-1;_AED=0.00;_eAED=0.00;_QI=287|1|1|1|1|1|3|395|769
chr1_3 exon 36148817 36149682 36148817 ID=Msa0116790-mRNA-1:exon:11658;Parent=Msa0116790-mRNA-1
chr1_3 exon 36150591 36150717 36150591 ID=Msa0116790-mRNA-1:exon:11657;Parent=Msa0116790-mRNA-1
chr1_3 exon 36151513 36153511 36151513 ID=Msa0116790-mRNA-1:exon:11656;Parent=Msa0116790-mRNA-1
chr1_3 five_prime_UTR 36153225 36153511 36153225 ID=Msa0116790-mRNA-1:five_prime_utr;Parent=Msa0116790-mRNA-1
chr1_3 CDS 36151513 36153224 36151513 ID=Msa0116790-mRNA-1:cds;Parent=Msa0116790-mRNA-1
chr1_3 CDS 36150591 36150717 36150591 ID=Msa0116790-mRNA-1:cds;Parent=Msa0116790-mRNA-1
chr1_3 CDS 36149212 36149682 36149212 ID=Msa0116790-mRNA-1:cds;Parent=Msa0116790-mRNA-1
chr1_3 three_prime_UTR 36148817 36149211 36148817 ID=Msa0116790-mRNA-1:three_prime_utr;Parent=Msa0116790-mRNA-1
Gene Sequence

>Msa0116790

ATGTTGGTCCAAGAGCATTCTTCAGCTCAAAAACCATCAAATCCAAATCCAAATCCAAAACCTTATTTGAAAAAAAGTGATCTTCCTACAAACCGTTTTACTCATACAAAGAACCTCGACTTCTCCGTATGGGCATCCGAAAATCTTTACAAAATTGTTTCCGTCATTCTTCTCGTCGTAACCGTCGCAGCACTTTTCTTCCTACGTAACGTTGGCGACACCGCCGCTTTACTTTGTTTCGAGAACAAAGCGCGTGATCTCGAGAAGATCGAGTATCCACGCGTCGATTGGAACAAAATCACACCAATCGCCGATAGAAATTCGCGGTACGCCAATTTCTTATCGGAGAAATGGATCGTGGTTTCGGTTTCGGGTTACCCGAGTGATGAGTTGAAGAAATTGGTGAAGGTGAAGGGTTGGCAGGTTGTGGCGATTGGTGATTCGAGAACTCCGGCGGATTGGAGTTTGAAAGGTTGTATCTTTTTGTCATTGGATGAACAAGCGAATTTGGGGTTTAGGGTTGTTGATTATTTGCCTTATGATTCTTATGTTAGGAAAATTGTTGGGTATTTGTTTGCAATTCAACATGGTGCTAAGAAGATTTTTGATGCTGATGATAGAGGGGAAGTGATTGATGGGGATTTGGGGAAACATTTTGATGTTGAATTGGTTGGTGAAGGTGCTAGGCAAGAGGTTTTGTTGCAGTATAGTCATGATAATCCTAATAGGACTGTTGTTAATCCGTATGTTCATTTCGGGCAAAGATCGGTTTGGCCGAGAGGTTTGCCGTTGGAAAATGTGGGTGAGATTGGGCATGAAGAGTTTTACACTCAGGTGTTTGGTGGGAAACAGTTTATTCAGCAGGGGATTTCGAATGGATTGCCTGATGTTGATTCTGTGTTTTATTTTACGAGGAAATCGGGTTTGGAACCGTTTGATATTCGATTTGATAAGCATGCGCCGAAGGTTGCATTGCCTCAGGGTGTGATGATGCCGGTTAATTCTTTTAATACGATGTATCATTCACCTGCTTTTTGGGCTTTGATGCTTCCGGTTTCGGTTAGTAGGATGGCTTCTGATGTTTTGAGAGGTTATTGGGGACAGAGGCTTCTTTGGGAAGTTGGTGGTTATGTTGCTGTTTATCCACCTACTGTTCATAGATATGATAGGGTTGAGGCTTATCCCTTTTCAGAGGAGAAAGATCTTCATGTGAATGTTGGTCGTTTGATTAAGTATTTGGTTCTGTGGAGATCGGATAAGCATAGATTGTTTGAGAAGATCTTGGATTTGAGCTATGCAATGGCAGAGGAGGGTTTTTGGACCGACAAGGATGTGAAACTTACTGCCGCTTGGCTTCAGGATTTGTTAGCTGTTGGTTATCAGCAGCCAAGGCTAATGTCTTTGGAACTTGGTCGTCCTAGAGCAAACATTGGTGACGGTGACCAGAGGGAGTTTATCCCACAAAAGTTGCCGTCTGTTCATCTTGGGGTTGAAGAAACAGGAACTGTGAATTATGAGATTGCTAATTTAATCAGATGGAGAAAAACTTTCGGGAATGTTGTGCTCATCATGCATTGCAGCGGGCCTGTTGAACGCACGGCCCTTGAATGGAGGTTGCTTTATGGGAGAATATTCAGAAGTGTCGTTATTTTGTCGGAAAAGAAGGACGTAGATCTTGTTGTTCAGGAGGTCCATTTGGACCAAGCATACAAGTACCTGCCAAAAATATTTGATCAATTTAGCAGTGCAGAAGGATTTTTATTCCTGCAGGATAATACAATTCTTAACTATTGGAACTTACTACAAGCGGATAAAACCAAACTGTGGATCACTAATAAGGTACCCGAGTCTTGGTCTTCTGTTTTAACTGGGGACAACAATGCCGACTGGTTATCTCAACAAGCAAGCATGGTACAAAAGGTTGTTAGCATGATGCCAGCTCACTTTCAAGTCAATTACAAAGACACAAGTAACAATGACAAGAACCTCTTGTTATGCAGTTCTGAGATATTCTATGTTCCTCAGCGCTTAATTAGTGATTTCGTTGACCTTGTTAACCTAGTAGACAATCTAGAGATCCATCAGAAGGTTGCAATTCCTATGTTCTTTGTCTCAATGGATTCTACACAGAATTTTGATCCTGTTCTTGATAAAACAATCTACAAGCAAGCTCCTCCGACTAATTCATCGACTCTTTATTCGGCTAAAGTCCCTGCTGTTCATCCATGGAGTGTATCAAGTGAGCAAGAATTTATTAAGCTTATCAGAATAATGGCTGAAGGGGATCCACTCCTAATGGAATTGGTTTGA
Protein sequence

>Msa0116790

MLVQEHSSAQKPSNPNPNPKPYLKKSDLPTNRFTHTKNLDFSVWASENLYKIVSVILLVVTVAALFFLRNVGDTAALLCFENKARDLEKIEYPRVDWNKITPIADRNSRYANFLSEKWIVVSVSGYPSDELKKLVKVKGWQVVAIGDSRTPADWSLKGCIFLSLDEQANLGFRVVDYLPYDSYVRKIVGYLFAIQHGAKKIFDADDRGEVIDGDLGKHFDVELVGEGARQEVLLQYSHDNPNRTVVNPYVHFGQRSVWPRGLPLENVGEIGHEEFYTQVFGGKQFIQQGISNGLPDVDSVFYFTRKSGLEPFDIRFDKHAPKVALPQGVMMPVNSFNTMYHSPAFWALMLPVSVSRMASDVLRGYWGQRLLWEVGGYVAVYPPTVHRYDRVEAYPFSEEKDLHVNVGRLIKYLVLWRSDKHRLFEKILDLSYAMAEEGFWTDKDVKLTAAWLQDLLAVGYQQPRLMSLELGRPRANIGDGDQREFIPQKLPSVHLGVEETGTVNYEIANLIRWRKTFGNVVLIMHCSGPVERTALEWRLLYGRIFRSVVILSEKKDVDLVVQEVHLDQAYKYLPKIFDQFSSAEGFLFLQDNTILNYWNLLQADKTKLWITNKVPESWSSVLTGDNNADWLSQQASMVQKVVSMMPAHFQVNYKDTSNNDKNLLLCSSEIFYVPQRLISDFVDLVNLVDNLEIHQKVAIPMFFVSMDSTQNFDPVLDKTIYKQAPPTNSSTLYSAKVPAVHPWSVSSEQEFIKLIRIMAEGDPLLMELV*