AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1269300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1269300 MtrunA17_Chr4g0000361 97.794 136 2 1 1 135 1 136 2.90e-94 268
Msa1269300 MtrunA17_Chr3g0138861 63.014 73 27 0 63 135 1 73 5.89e-31 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1269300 AT1G16810.3 59.722 144 49 3 1 135 1 144 3.33e-45 144
Msa1269300 AT1G16810.2 59.722 144 49 3 1 135 1 144 3.33e-45 144
Msa1269300 AT1G16810.1 59.722 144 49 3 1 135 1 144 3.33e-45 144

Find 43 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAGTAATAATGTTATCTT+TGG 0.227793 8_3:+2506382 Msa1269300:three_prime_UTR
TCATTTACTTCTTGATCATT+AGG 0.263557 8_3:-2505890 None:intergenic
CGCTCATGTTTGCGAGATAT+TGG 0.302036 8_3:-2506069 None:intergenic
AATCATCCAGGACCAACTTT+AGG 0.309675 8_3:-2506106 None:intergenic
GTGAGATTTATTAGAAATCT+TGG 0.347606 8_3:-2506023 None:intergenic
TTTGAGTTAGATTCTGTTGA+TGG 0.354127 8_3:+2506274 Msa1269300:three_prime_UTR
CGAGATATTGGTTGAAATCC+TGG 0.357664 8_3:-2506057 None:intergenic
GCAACTTGATGTTCATAGAT+TGG 0.407231 8_3:+2506000 Msa1269300:CDS
GGAAAAGCATTGGATGTTGC+TGG 0.421175 8_3:+2504832 Msa1269300:CDS
ATGATGGGAGTGAATTGAGC+AGG 0.471811 8_3:+2505909 Msa1269300:CDS
CATTATGATATTCCTAAAGT+TGG 0.473152 8_3:+2506094 Msa1269300:CDS
AACAAACAAATACAAATGAC+AGG 0.476276 8_3:-2506162 None:intergenic
ACAGCTATTGTGCAAGCATA+TGG 0.479185 8_3:-2506196 None:intergenic
AATGATCAAGAAGTAAATGA+TGG 0.482714 8_3:+2505893 Msa1269300:CDS
GATATTCCTAAAGTTGGTCC+TGG 0.485583 8_3:+2506100 Msa1269300:CDS
TCTATGTACCGCCTCTCTGC+TGG 0.489804 8_3:-2505968 None:intergenic
AGTTGGTCCTGGATGATTCA+AGG 0.491632 8_3:+2506111 Msa1269300:exon
AAAGACGAACAGATAGATCT+TGG 0.494750 8_3:-2504389 None:intergenic
TTGAGTTAGATTCTGTTGAT+GGG 0.504146 8_3:+2506275 Msa1269300:three_prime_UTR
ATCTCACCGCGATAGAATCC+AGG 0.518832 8_3:+2506039 Msa1269300:CDS
GAAGCTGAAGGGAAAAGCAT+TGG 0.531649 8_3:+2504822 Msa1269300:CDS
ACTGAAGATGAAATCTCAGC+AGG 0.540124 8_3:+2504910 Msa1269300:CDS
AGATGATCATCATAATGAGC+AGG 0.545898 8_3:-2505941 None:intergenic
AACAACTCCTTGAATCATCC+AGG 0.551401 8_3:-2506118 None:intergenic
TCGGCATATGAGAATGTTGT+TGG 0.556165 8_3:+2504790 Msa1269300:CDS
TGATGGGAGTGAATTGAGCA+GGG 0.558875 8_3:+2505910 Msa1269300:CDS
ATGATCAAGAAGTAAATGAT+GGG 0.571574 8_3:+2505894 Msa1269300:CDS
GAGTTGTTCAAGTATGAAGA+AGG 0.582106 8_3:+2506133 Msa1269300:three_prime_UTR
TCATTGTTTCACAGATATGT+CGG 0.582355 8_3:+2504771 Msa1269300:intron
TGAGTTAGATTCTGTTGATG+GGG 0.607672 8_3:+2506276 Msa1269300:three_prime_UTR
GTCTTTCATTCAATTCACAA+AGG 0.615169 8_3:+2504406 Msa1269300:five_prime_UTR
GAGGCGGTACATAGAACAGA+GGG 0.618835 8_3:+2505976 Msa1269300:CDS
ATCTTACACCAGCAGAGAGG+CGG 0.643614 8_3:+2505960 Msa1269300:CDS
GATCTTGGTGCGTAAAACGA+TGG 0.645078 8_3:-2504374 None:intergenic
GCATATGAGAATGTTGTTGG+TGG 0.647733 8_3:+2504793 Msa1269300:CDS
ACAAACAAATACAAATGACA+GGG 0.651390 8_3:-2506161 None:intergenic
TGAAATCCTGGATTCTATCG+CGG 0.661087 8_3:-2506045 None:intergenic
AGAGGCGGTACATAGAACAG+AGG 0.666218 8_3:+2505975 Msa1269300:CDS
TGGTGGTAAACTGAAGCTGA+AGG 0.678860 8_3:+2504810 Msa1269300:CDS
AAAGCATTGGATGTTGCTGG+CGG 0.694873 8_3:+2504835 Msa1269300:CDS
GGTGGTAAACTGAAGCTGAA+GGG 0.696896 8_3:+2504811 Msa1269300:CDS
ATCATCTTACACCAGCAGAG+AGG 0.709383 8_3:+2505957 Msa1269300:CDS
CAAACAAATACAAATGACAG+GGG 0.732012 8_3:-2506160 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATAAAAATTTCATAGA+AGG - chr8_3:2506319-2506338 None:intergenic 10.0%
!! AAATATAAAAATTTCATAGA+AGG - chr8_3:2506319-2506338 None:intergenic 10.0%
!! TAATAATAAATTCACCAAAA+CGG - chr8_3:2504636-2504655 None:intergenic 15.0%
!!! CATAGTATTATGTTTTAAAA+TGG + chr8_3:2505029-2505048 Msa1269300:intron 15.0%
!! AAAAAAATTATGTTCAAGTA+AGG - chr8_3:2505281-2505300 None:intergenic 15.0%
!!! TTTTTTTACTGAAAATCATA+AGG + chr8_3:2505294-2505313 Msa1269300:intron 15.0%
!!! TTTTTTACTGAAAATCATAA+GGG + chr8_3:2505295-2505314 Msa1269300:intron 15.0%
!!! TCAACAATAAATATCATTTT+CGG + chr8_3:2505345-2505364 Msa1269300:intron 15.0%
!! TAAATATATTGCACAATTTA+TGG - chr8_3:2505812-2505831 None:intergenic 15.0%
!! TAATAATAAATTCACCAAAA+CGG - chr8_3:2504636-2504655 None:intergenic 15.0%
!!! CATAGTATTATGTTTTAAAA+TGG + chr8_3:2505029-2505048 Msa1269300:intron 15.0%
!! AAAAAAATTATGTTCAAGTA+AGG - chr8_3:2505281-2505300 None:intergenic 15.0%
!!! TTTTTTTACTGAAAATCATA+AGG + chr8_3:2505294-2505313 Msa1269300:intron 15.0%
!!! TTTTTTACTGAAAATCATAA+GGG + chr8_3:2505295-2505314 Msa1269300:intron 15.0%
!!! TCAACAATAAATATCATTTT+CGG + chr8_3:2505345-2505364 Msa1269300:intron 15.0%
!! TAAATATATTGCACAATTTA+TGG - chr8_3:2505812-2505831 None:intergenic 15.0%
!!! ACAATGAAAATTAGGTTTTA+GGG - chr8_3:2504527-2504546 None:intergenic 20.0%
!!! TAATTTTCATTGTCATGTTA+GGG + chr8_3:2504534-2504553 Msa1269300:intron 20.0%
!!! TTATGTTTTAAAATGGTCAA+TGG + chr8_3:2505036-2505055 Msa1269300:intron 20.0%
!!! TTCTCATCATAATTTTCTTT+GGG - chr8_3:2505145-2505164 None:intergenic 20.0%
!!! ATTCTCATCATAATTTTCTT+TGG - chr8_3:2505146-2505165 None:intergenic 20.0%
!! ATTATAGTAAATGAGTATCT+GGG + chr8_3:2505212-2505231 Msa1269300:intron 20.0%
!! GAGTATTATAACAATATGAA+TGG + chr8_3:2505579-2505598 Msa1269300:intron 20.0%
!!! GATTTTGAAAGAAAAAGAAA+AGG - chr8_3:2505734-2505753 None:intergenic 20.0%
!! AACTAAAACCAAAAAGATTA+AGG - chr8_3:2505787-2505806 None:intergenic 20.0%
!!! ACAATGAAAATTAGGTTTTA+GGG - chr8_3:2504527-2504546 None:intergenic 20.0%
!!! TAATTTTCATTGTCATGTTA+GGG + chr8_3:2504534-2504553 Msa1269300:intron 20.0%
!!! TTATGTTTTAAAATGGTCAA+TGG + chr8_3:2505036-2505055 Msa1269300:intron 20.0%
!!! TTCTCATCATAATTTTCTTT+GGG - chr8_3:2505145-2505164 None:intergenic 20.0%
!!! ATTCTCATCATAATTTTCTT+TGG - chr8_3:2505146-2505165 None:intergenic 20.0%
!! ATTATAGTAAATGAGTATCT+GGG + chr8_3:2505212-2505231 Msa1269300:intron 20.0%
!! GAGTATTATAACAATATGAA+TGG + chr8_3:2505579-2505598 Msa1269300:intron 20.0%
!!! GATTTTGAAAGAAAAAGAAA+AGG - chr8_3:2505734-2505753 None:intergenic 20.0%
!! AACTAAAACCAAAAAGATTA+AGG - chr8_3:2505787-2505806 None:intergenic 20.0%
!! GACAATGAAAATTAGGTTTT+AGG - chr8_3:2504528-2504547 None:intergenic 25.0%
! CTAACATGACAATGAAAATT+AGG - chr8_3:2504535-2504554 None:intergenic 25.0%
!! CTAATTTTCATTGTCATGTT+AGG + chr8_3:2504533-2504552 Msa1269300:intron 25.0%
!! ATAATTTTCTTTGGGTCAAA+AGG - chr8_3:2505137-2505156 None:intergenic 25.0%
! GATTATAGTAAATGAGTATC+TGG + chr8_3:2505211-2505230 Msa1269300:intron 25.0%
!! ATAAATATCATTTTCGGCAA+TGG + chr8_3:2505351-2505370 Msa1269300:intron 25.0%
!! TAAATATCATTTTCGGCAAT+GGG + chr8_3:2505352-2505371 Msa1269300:intron 25.0%
!!! TTTTTGGTTTACATTTCCTA+AGG + chr8_3:2505429-2505448 Msa1269300:intron 25.0%
! TAATACAAAATCCCCTAATT+TGG - chr8_3:2505645-2505664 None:intergenic 25.0%
! TTGAAAGAAAAAGAAAAGGA+AGG - chr8_3:2505730-2505749 None:intergenic 25.0%
! AAAAGATTAAGGATCTGTTT+CGG - chr8_3:2505776-2505795 None:intergenic 25.0%
!! AAACAGATCCTTAATCTTTT+TGG + chr8_3:2505776-2505795 Msa1269300:intron 25.0%
! TCATTTACTTCTTGATCATT+AGG - chr8_3:2505893-2505912 None:intergenic 25.0%
! AATGATCAAGAAGTAAATGA+TGG + chr8_3:2505893-2505912 Msa1269300:CDS 25.0%
! ATGATCAAGAAGTAAATGAT+GGG + chr8_3:2505894-2505913 Msa1269300:CDS 25.0%
! GTGAGATTTATTAGAAATCT+TGG - chr8_3:2506026-2506045 None:intergenic 25.0%
! CATTATGATATTCCTAAAGT+TGG + chr8_3:2506094-2506113 Msa1269300:CDS 25.0%
! ACAAACAAATACAAATGACA+GGG - chr8_3:2506164-2506183 None:intergenic 25.0%
! AACAAACAAATACAAATGAC+AGG - chr8_3:2506165-2506184 None:intergenic 25.0%
!! GACAATGAAAATTAGGTTTT+AGG - chr8_3:2504528-2504547 None:intergenic 25.0%
! CTAACATGACAATGAAAATT+AGG - chr8_3:2504535-2504554 None:intergenic 25.0%
!! CTAATTTTCATTGTCATGTT+AGG + chr8_3:2504533-2504552 Msa1269300:intron 25.0%
!! ATAATTTTCTTTGGGTCAAA+AGG - chr8_3:2505137-2505156 None:intergenic 25.0%
! GATTATAGTAAATGAGTATC+TGG + chr8_3:2505211-2505230 Msa1269300:intron 25.0%
!! ATAAATATCATTTTCGGCAA+TGG + chr8_3:2505351-2505370 Msa1269300:intron 25.0%
!! TAAATATCATTTTCGGCAAT+GGG + chr8_3:2505352-2505371 Msa1269300:intron 25.0%
!!! TTTTTGGTTTACATTTCCTA+AGG + chr8_3:2505429-2505448 Msa1269300:intron 25.0%
! TAATACAAAATCCCCTAATT+TGG - chr8_3:2505645-2505664 None:intergenic 25.0%
! TTGAAAGAAAAAGAAAAGGA+AGG - chr8_3:2505730-2505749 None:intergenic 25.0%
! AAAAGATTAAGGATCTGTTT+CGG - chr8_3:2505776-2505795 None:intergenic 25.0%
!! AAACAGATCCTTAATCTTTT+TGG + chr8_3:2505776-2505795 Msa1269300:intron 25.0%
! TCATTTACTTCTTGATCATT+AGG - chr8_3:2505893-2505912 None:intergenic 25.0%
! AATGATCAAGAAGTAAATGA+TGG + chr8_3:2505893-2505912 Msa1269300:CDS 25.0%
! ATGATCAAGAAGTAAATGAT+GGG + chr8_3:2505894-2505913 Msa1269300:CDS 25.0%
! GTGAGATTTATTAGAAATCT+TGG - chr8_3:2506026-2506045 None:intergenic 25.0%
! CATTATGATATTCCTAAAGT+TGG + chr8_3:2506094-2506113 Msa1269300:CDS 25.0%
! ACAAACAAATACAAATGACA+GGG - chr8_3:2506164-2506183 None:intergenic 25.0%
! AACAAACAAATACAAATGAC+AGG - chr8_3:2506165-2506184 None:intergenic 25.0%
GTCTTTCATTCAATTCACAA+AGG + chr8_3:2504406-2504425 Msa1269300:five_prime_UTR 30.0%
TCATTGTTTCACAGATATGT+CGG + chr8_3:2504771-2504790 Msa1269300:intron 30.0%
! ATAAGATGTTTTACTTGGCT+AGG - chr8_3:2504950-2504969 None:intergenic 30.0%
TAGCCAAGTAAAACATCTTA+TGG + chr8_3:2504949-2504968 Msa1269300:intron 30.0%
! ACACCATAAGATGTTTTACT+TGG - chr8_3:2504955-2504974 None:intergenic 30.0%
AGTAAAACATCTTATGGTGT+TGG + chr8_3:2504955-2504974 Msa1269300:intron 30.0%
GTATGATGTAACAAGAATCA+AGG - chr8_3:2505006-2505025 None:intergenic 30.0%
! TGTATGAATTTTGCAAGAAC+AGG + chr8_3:2505167-2505186 Msa1269300:intron 30.0%
! TTTGTAGTCACTGTTCTTTT+TGG + chr8_3:2505413-2505432 Msa1269300:intron 30.0%
GAAGGACTCAAAAAATGTAT+TGG - chr8_3:2505623-2505642 None:intergenic 30.0%
!!! TTTTTGAGTCCTTCCAAATT+AGG + chr8_3:2505629-2505648 Msa1269300:intron 30.0%
!! TTTTGAGTCCTTCCAAATTA+GGG + chr8_3:2505630-2505649 Msa1269300:intron 30.0%
AAAGAAAAAGAAAAGGAAGG+AGG - chr8_3:2505727-2505746 None:intergenic 30.0%
!! GTGCCATTTGTATTTAATGT+AGG + chr8_3:2505842-2505861 Msa1269300:intron 30.0%
CCACCTACATTAAATACAAA+TGG - chr8_3:2505848-2505867 None:intergenic 30.0%
CCATTTGTATTTAATGTAGG+TGG + chr8_3:2505845-2505864 Msa1269300:intron 30.0%
CAAACAAATACAAATGACAG+GGG - chr8_3:2506163-2506182 None:intergenic 30.0%
! TTTGAGTTAGATTCTGTTGA+TGG + chr8_3:2506274-2506293 Msa1269300:three_prime_UTR 30.0%
TTGAGTTAGATTCTGTTGAT+GGG + chr8_3:2506275-2506294 Msa1269300:three_prime_UTR 30.0%
GTCTTTCATTCAATTCACAA+AGG + chr8_3:2504406-2504425 Msa1269300:five_prime_UTR 30.0%
TCATTGTTTCACAGATATGT+CGG + chr8_3:2504771-2504790 Msa1269300:intron 30.0%
! ATAAGATGTTTTACTTGGCT+AGG - chr8_3:2504950-2504969 None:intergenic 30.0%
TAGCCAAGTAAAACATCTTA+TGG + chr8_3:2504949-2504968 Msa1269300:intron 30.0%
! ACACCATAAGATGTTTTACT+TGG - chr8_3:2504955-2504974 None:intergenic 30.0%
AGTAAAACATCTTATGGTGT+TGG + chr8_3:2504955-2504974 Msa1269300:intron 30.0%
GTATGATGTAACAAGAATCA+AGG - chr8_3:2505006-2505025 None:intergenic 30.0%
! TGTATGAATTTTGCAAGAAC+AGG + chr8_3:2505167-2505186 Msa1269300:intron 30.0%
! TTTGTAGTCACTGTTCTTTT+TGG + chr8_3:2505413-2505432 Msa1269300:intron 30.0%
GAAGGACTCAAAAAATGTAT+TGG - chr8_3:2505623-2505642 None:intergenic 30.0%
!!! TTTTTGAGTCCTTCCAAATT+AGG + chr8_3:2505629-2505648 Msa1269300:intron 30.0%
!! TTTTGAGTCCTTCCAAATTA+GGG + chr8_3:2505630-2505649 Msa1269300:intron 30.0%
AAAGAAAAAGAAAAGGAAGG+AGG - chr8_3:2505727-2505746 None:intergenic 30.0%
!! GTGCCATTTGTATTTAATGT+AGG + chr8_3:2505842-2505861 Msa1269300:intron 30.0%
CCACCTACATTAAATACAAA+TGG - chr8_3:2505848-2505867 None:intergenic 30.0%
CCATTTGTATTTAATGTAGG+TGG + chr8_3:2505845-2505864 Msa1269300:intron 30.0%
CAAACAAATACAAATGACAG+GGG - chr8_3:2506163-2506182 None:intergenic 30.0%
! TTTGAGTTAGATTCTGTTGA+TGG + chr8_3:2506274-2506293 Msa1269300:three_prime_UTR 30.0%
TTGAGTTAGATTCTGTTGAT+GGG + chr8_3:2506275-2506294 Msa1269300:three_prime_UTR 30.0%
AAAGACGAACAGATAGATCT+TGG - chr8_3:2504392-2504411 None:intergenic 35.0%
CCTAAAGACATGAATGTTTG+GGG - chr8_3:2504580-2504599 None:intergenic 35.0%
CCCTAAAGACATGAATGTTT+GGG - chr8_3:2504581-2504600 None:intergenic 35.0%
CCCAAACATTCATGTCTTTA+GGG + chr8_3:2504578-2504597 Msa1269300:intron 35.0%
ACCCTAAAGACATGAATGTT+TGG - chr8_3:2504582-2504601 None:intergenic 35.0%
TCAAATCACCTAGATTGCAA+TGG - chr8_3:2505193-2505212 None:intergenic 35.0%
AATCAACTAGGTTGCATAAC+AGG - chr8_3:2505394-2505413 None:intergenic 35.0%
CAGTGACTACAAAATCAACT+AGG - chr8_3:2505406-2505425 None:intergenic 35.0%
GGACTCAAAAAATGTATTGG+AGG - chr8_3:2505620-2505639 None:intergenic 35.0%
TTTGAGTCCTTCCAAATTAG+GGG + chr8_3:2505631-2505650 Msa1269300:intron 35.0%
ACAAAATCCCCTAATTTGGA+AGG - chr8_3:2505641-2505660 None:intergenic 35.0%
AGATGATCATCATAATGAGC+AGG - chr8_3:2505944-2505963 None:intergenic 35.0%
GCAACTTGATGTTCATAGAT+TGG + chr8_3:2506000-2506019 Msa1269300:CDS 35.0%
GAGTTGTTCAAGTATGAAGA+AGG + chr8_3:2506133-2506152 Msa1269300:three_prime_UTR 35.0%
TGAGTTAGATTCTGTTGATG+GGG + chr8_3:2506276-2506295 Msa1269300:three_prime_UTR 35.0%
AAAGACGAACAGATAGATCT+TGG - chr8_3:2504392-2504411 None:intergenic 35.0%
CCTAAAGACATGAATGTTTG+GGG - chr8_3:2504580-2504599 None:intergenic 35.0%
CCCTAAAGACATGAATGTTT+GGG - chr8_3:2504581-2504600 None:intergenic 35.0%
CCCAAACATTCATGTCTTTA+GGG + chr8_3:2504578-2504597 Msa1269300:intron 35.0%
ACCCTAAAGACATGAATGTT+TGG - chr8_3:2504582-2504601 None:intergenic 35.0%
TCAAATCACCTAGATTGCAA+TGG - chr8_3:2505193-2505212 None:intergenic 35.0%
AATCAACTAGGTTGCATAAC+AGG - chr8_3:2505394-2505413 None:intergenic 35.0%
CAGTGACTACAAAATCAACT+AGG - chr8_3:2505406-2505425 None:intergenic 35.0%
GGACTCAAAAAATGTATTGG+AGG - chr8_3:2505620-2505639 None:intergenic 35.0%
TTTGAGTCCTTCCAAATTAG+GGG + chr8_3:2505631-2505650 Msa1269300:intron 35.0%
ACAAAATCCCCTAATTTGGA+AGG - chr8_3:2505641-2505660 None:intergenic 35.0%
AGATGATCATCATAATGAGC+AGG - chr8_3:2505944-2505963 None:intergenic 35.0%
GCAACTTGATGTTCATAGAT+TGG + chr8_3:2506000-2506019 Msa1269300:CDS 35.0%
GAGTTGTTCAAGTATGAAGA+AGG + chr8_3:2506133-2506152 Msa1269300:three_prime_UTR 35.0%
TGAGTTAGATTCTGTTGATG+GGG + chr8_3:2506276-2506295 Msa1269300:three_prime_UTR 35.0%
CCCCAAACATTCATGTCTTT+AGG + chr8_3:2504577-2504596 Msa1269300:intron 40.0%
! AGCTTATCTACTCACCGTTT+TGG + chr8_3:2504619-2504638 Msa1269300:intron 40.0%
TCGGCATATGAGAATGTTGT+TGG + chr8_3:2504790-2504809 Msa1269300:CDS 40.0%
GCATATGAGAATGTTGTTGG+TGG + chr8_3:2504793-2504812 Msa1269300:CDS 40.0%
ACTGAAGATGAAATCTCAGC+AGG + chr8_3:2504910-2504929 Msa1269300:CDS 40.0%
TTCTGTTTGATGTGCTGCAA+TGG + chr8_3:2505059-2505078 Msa1269300:intron 40.0%
CTGAAAATCATAAGGGACAG+TGG + chr8_3:2505302-2505321 Msa1269300:intron 40.0%
! GCAATGGGTTTCAGTAAACA+GGG + chr8_3:2505367-2505386 Msa1269300:intron 40.0%
AAAGAAAAGGAAGGAGGAAG+TGG - chr8_3:2505721-2505740 None:intergenic 40.0%
TAAGGATCTGTTTCGGAGTT+TGG - chr8_3:2505769-2505788 None:intergenic 40.0%
TGAAATCCTGGATTCTATCG+CGG - chr8_3:2506048-2506067 None:intergenic 40.0%
! CGAGATATTGGTTGAAATCC+TGG - chr8_3:2506060-2506079 None:intergenic 40.0%
! GATATTCCTAAAGTTGGTCC+TGG + chr8_3:2506100-2506119 Msa1269300:CDS 40.0%
AATCATCCAGGACCAACTTT+AGG - chr8_3:2506109-2506128 None:intergenic 40.0%
AACAACTCCTTGAATCATCC+AGG - chr8_3:2506121-2506140 None:intergenic 40.0%
ACAGCTATTGTGCAAGCATA+TGG - chr8_3:2506199-2506218 None:intergenic 40.0%
CCCCAAACATTCATGTCTTT+AGG + chr8_3:2504577-2504596 Msa1269300:intron 40.0%
! AGCTTATCTACTCACCGTTT+TGG + chr8_3:2504619-2504638 Msa1269300:intron 40.0%
TCGGCATATGAGAATGTTGT+TGG + chr8_3:2504790-2504809 Msa1269300:CDS 40.0%
GCATATGAGAATGTTGTTGG+TGG + chr8_3:2504793-2504812 Msa1269300:CDS 40.0%
ACTGAAGATGAAATCTCAGC+AGG + chr8_3:2504910-2504929 Msa1269300:CDS 40.0%
TTCTGTTTGATGTGCTGCAA+TGG + chr8_3:2505059-2505078 Msa1269300:intron 40.0%
CTGAAAATCATAAGGGACAG+TGG + chr8_3:2505302-2505321 Msa1269300:intron 40.0%
! GCAATGGGTTTCAGTAAACA+GGG + chr8_3:2505367-2505386 Msa1269300:intron 40.0%
AAAGAAAAGGAAGGAGGAAG+TGG - chr8_3:2505721-2505740 None:intergenic 40.0%
TAAGGATCTGTTTCGGAGTT+TGG - chr8_3:2505769-2505788 None:intergenic 40.0%
TGAAATCCTGGATTCTATCG+CGG - chr8_3:2506048-2506067 None:intergenic 40.0%
! CGAGATATTGGTTGAAATCC+TGG - chr8_3:2506060-2506079 None:intergenic 40.0%
! GATATTCCTAAAGTTGGTCC+TGG + chr8_3:2506100-2506119 Msa1269300:CDS 40.0%
AATCATCCAGGACCAACTTT+AGG - chr8_3:2506109-2506128 None:intergenic 40.0%
AACAACTCCTTGAATCATCC+AGG - chr8_3:2506121-2506140 None:intergenic 40.0%
ACAGCTATTGTGCAAGCATA+TGG - chr8_3:2506199-2506218 None:intergenic 40.0%
! GATCTTGGTGCGTAAAACGA+TGG - chr8_3:2504377-2504396 None:intergenic 45.0%
TGGTGGTAAACTGAAGCTGA+AGG + chr8_3:2504810-2504829 Msa1269300:CDS 45.0%
GGTGGTAAACTGAAGCTGAA+GGG + chr8_3:2504811-2504830 Msa1269300:CDS 45.0%
! GAAGCTGAAGGGAAAAGCAT+TGG + chr8_3:2504822-2504841 Msa1269300:CDS 45.0%
!! GGAAAAGCATTGGATGTTGC+TGG + chr8_3:2504832-2504851 Msa1269300:CDS 45.0%
!! AAAGCATTGGATGTTGCTGG+CGG + chr8_3:2504835-2504854 Msa1269300:CDS 45.0%
AGAACAGGCCATTGCAATCT+AGG + chr8_3:2505182-2505201 Msa1269300:intron 45.0%
! GGCAATGGGTTTCAGTAAAC+AGG + chr8_3:2505366-2505385 Msa1269300:intron 45.0%
ACATTTCCTAAGGCTCCGTT+CGG + chr8_3:2505439-2505458 Msa1269300:intron 45.0%
AAAAGGAAGGAGGAAGTGGA+GGG - chr8_3:2505717-2505736 None:intergenic 45.0%
ATCTGTTTCGGAGTTTGGAG+GGG - chr8_3:2505764-2505783 None:intergenic 45.0%
GATCTGTTTCGGAGTTTGGA+GGG - chr8_3:2505765-2505784 None:intergenic 45.0%
! ATGATGGGAGTGAATTGAGC+AGG + chr8_3:2505909-2505928 Msa1269300:CDS 45.0%
TGATGGGAGTGAATTGAGCA+GGG + chr8_3:2505910-2505929 Msa1269300:CDS 45.0%
ATCATCTTACACCAGCAGAG+AGG + chr8_3:2505957-2505976 Msa1269300:CDS 45.0%
CGCTCATGTTTGCGAGATAT+TGG - chr8_3:2506072-2506091 None:intergenic 45.0%
AGTTGGTCCTGGATGATTCA+AGG + chr8_3:2506111-2506130 Msa1269300:exon 45.0%
! GATCTTGGTGCGTAAAACGA+TGG - chr8_3:2504377-2504396 None:intergenic 45.0%
TGGTGGTAAACTGAAGCTGA+AGG + chr8_3:2504810-2504829 Msa1269300:CDS 45.0%
GGTGGTAAACTGAAGCTGAA+GGG + chr8_3:2504811-2504830 Msa1269300:CDS 45.0%
! GAAGCTGAAGGGAAAAGCAT+TGG + chr8_3:2504822-2504841 Msa1269300:CDS 45.0%
!! GGAAAAGCATTGGATGTTGC+TGG + chr8_3:2504832-2504851 Msa1269300:CDS 45.0%
!! AAAGCATTGGATGTTGCTGG+CGG + chr8_3:2504835-2504854 Msa1269300:CDS 45.0%
AGAACAGGCCATTGCAATCT+AGG + chr8_3:2505182-2505201 Msa1269300:intron 45.0%
! GGCAATGGGTTTCAGTAAAC+AGG + chr8_3:2505366-2505385 Msa1269300:intron 45.0%
ACATTTCCTAAGGCTCCGTT+CGG + chr8_3:2505439-2505458 Msa1269300:intron 45.0%
AAAAGGAAGGAGGAAGTGGA+GGG - chr8_3:2505717-2505736 None:intergenic 45.0%
ATCTGTTTCGGAGTTTGGAG+GGG - chr8_3:2505764-2505783 None:intergenic 45.0%
GATCTGTTTCGGAGTTTGGA+GGG - chr8_3:2505765-2505784 None:intergenic 45.0%
! ATGATGGGAGTGAATTGAGC+AGG + chr8_3:2505909-2505928 Msa1269300:CDS 45.0%
TGATGGGAGTGAATTGAGCA+GGG + chr8_3:2505910-2505929 Msa1269300:CDS 45.0%
ATCATCTTACACCAGCAGAG+AGG + chr8_3:2505957-2505976 Msa1269300:CDS 45.0%
CGCTCATGTTTGCGAGATAT+TGG - chr8_3:2506072-2506091 None:intergenic 45.0%
AGTTGGTCCTGGATGATTCA+AGG + chr8_3:2506111-2506130 Msa1269300:exon 45.0%
CATTTCCTAAGGCTCCGTTC+GGG + chr8_3:2505440-2505459 Msa1269300:intron 50.0%
!! GAGGGAATGGATGGCTTTGT+GGG + chr8_3:2505474-2505493 Msa1269300:intron 50.0%
!! AGGGAATGGATGGCTTTGTG+GGG + chr8_3:2505475-2505494 Msa1269300:intron 50.0%
TGGAGGGAATAGAGGACTTC+GGG - chr8_3:2505701-2505720 None:intergenic 50.0%
GTGGAGGGAATAGAGGACTT+CGG - chr8_3:2505702-2505721 None:intergenic 50.0%
GAAAAGGAAGGAGGAAGTGG+AGG - chr8_3:2505718-2505737 None:intergenic 50.0%
TTTCGGAGTTTGGAGGGGAA+GGG - chr8_3:2505759-2505778 None:intergenic 50.0%
GGATCTGTTTCGGAGTTTGG+AGG - chr8_3:2505766-2505785 None:intergenic 50.0%
ATCTTACACCAGCAGAGAGG+CGG + chr8_3:2505960-2505979 Msa1269300:CDS 50.0%
AGAGGCGGTACATAGAACAG+AGG + chr8_3:2505975-2505994 Msa1269300:CDS 50.0%
GAGGCGGTACATAGAACAGA+GGG + chr8_3:2505976-2505995 Msa1269300:CDS 50.0%
ATCTCACCGCGATAGAATCC+AGG + chr8_3:2506039-2506058 Msa1269300:CDS 50.0%
CATTTCCTAAGGCTCCGTTC+GGG + chr8_3:2505440-2505459 Msa1269300:intron 50.0%
!! GAGGGAATGGATGGCTTTGT+GGG + chr8_3:2505474-2505493 Msa1269300:intron 50.0%
!! AGGGAATGGATGGCTTTGTG+GGG + chr8_3:2505475-2505494 Msa1269300:intron 50.0%
TGGAGGGAATAGAGGACTTC+GGG - chr8_3:2505701-2505720 None:intergenic 50.0%
GTGGAGGGAATAGAGGACTT+CGG - chr8_3:2505702-2505721 None:intergenic 50.0%
GAAAAGGAAGGAGGAAGTGG+AGG - chr8_3:2505718-2505737 None:intergenic 50.0%
TTTCGGAGTTTGGAGGGGAA+GGG - chr8_3:2505759-2505778 None:intergenic 50.0%
GGATCTGTTTCGGAGTTTGG+AGG - chr8_3:2505766-2505785 None:intergenic 50.0%
ATCTTACACCAGCAGAGAGG+CGG + chr8_3:2505960-2505979 Msa1269300:CDS 50.0%
AGAGGCGGTACATAGAACAG+AGG + chr8_3:2505975-2505994 Msa1269300:CDS 50.0%
GAGGCGGTACATAGAACAGA+GGG + chr8_3:2505976-2505995 Msa1269300:CDS 50.0%
ATCTCACCGCGATAGAATCC+AGG + chr8_3:2506039-2506058 Msa1269300:CDS 50.0%
AAACTCCCGAACGGAGCCTT+AGG - chr8_3:2505448-2505467 None:intergenic 55.0%
TAAGGCTCCGTTCGGGAGTT+TGG + chr8_3:2505447-2505466 Msa1269300:intron 55.0%
TTTGGAGGGGAGGGAATGGA+TGG + chr8_3:2505465-2505484 Msa1269300:intron 55.0%
! GGAGGGAATGGATGGCTTTG+TGG + chr8_3:2505473-2505492 Msa1269300:intron 55.0%
!! GGGAATGGATGGCTTTGTGG+GGG + chr8_3:2505476-2505495 Msa1269300:intron 55.0%
!! AATGGATGGCTTTGTGGGGG+AGG + chr8_3:2505479-2505498 Msa1269300:intron 55.0%
!! ATGGATGGCTTTGTGGGGGA+GGG + chr8_3:2505480-2505499 Msa1269300:intron 55.0%
GGAATAGAGGACTTCGGGAG+GGG - chr8_3:2505696-2505715 None:intergenic 55.0%
GGGAATAGAGGACTTCGGGA+GGG - chr8_3:2505697-2505716 None:intergenic 55.0%
AGGGAATAGAGGACTTCGGG+AGG - chr8_3:2505698-2505717 None:intergenic 55.0%
GGAGGAAGTGGAGGGAATAG+AGG - chr8_3:2505709-2505728 None:intergenic 55.0%
GTTTCGGAGTTTGGAGGGGA+AGG - chr8_3:2505760-2505779 None:intergenic 55.0%
TCTATGTACCGCCTCTCTGC+TGG - chr8_3:2505971-2505990 None:intergenic 55.0%
AAACTCCCGAACGGAGCCTT+AGG - chr8_3:2505448-2505467 None:intergenic 55.0%
TAAGGCTCCGTTCGGGAGTT+TGG + chr8_3:2505447-2505466 Msa1269300:intron 55.0%
TTTGGAGGGGAGGGAATGGA+TGG + chr8_3:2505465-2505484 Msa1269300:intron 55.0%
! GGAGGGAATGGATGGCTTTG+TGG + chr8_3:2505473-2505492 Msa1269300:intron 55.0%
!! GGGAATGGATGGCTTTGTGG+GGG + chr8_3:2505476-2505495 Msa1269300:intron 55.0%
!! AATGGATGGCTTTGTGGGGG+AGG + chr8_3:2505479-2505498 Msa1269300:intron 55.0%
!! ATGGATGGCTTTGTGGGGGA+GGG + chr8_3:2505480-2505499 Msa1269300:intron 55.0%
GGAATAGAGGACTTCGGGAG+GGG - chr8_3:2505696-2505715 None:intergenic 55.0%
GGGAATAGAGGACTTCGGGA+GGG - chr8_3:2505697-2505716 None:intergenic 55.0%
AGGGAATAGAGGACTTCGGG+AGG - chr8_3:2505698-2505717 None:intergenic 55.0%
GGAGGAAGTGGAGGGAATAG+AGG - chr8_3:2505709-2505728 None:intergenic 55.0%
GTTTCGGAGTTTGGAGGGGA+AGG - chr8_3:2505760-2505779 None:intergenic 55.0%
TCTATGTACCGCCTCTCTGC+TGG - chr8_3:2505971-2505990 None:intergenic 55.0%
GCTCCGTTCGGGAGTTTGGA+GGG + chr8_3:2505451-2505470 Msa1269300:intron 60.0%
CTCCGTTCGGGAGTTTGGAG+GGG + chr8_3:2505452-2505471 Msa1269300:intron 60.0%
CTCCCCTCCAAACTCCCGAA+CGG - chr8_3:2505457-2505476 None:intergenic 60.0%
GTTCGGGAGTTTGGAGGGGA+GGG + chr8_3:2505456-2505475 Msa1269300:intron 60.0%
GGAGTTTGGAGGGGAGGGAA+TGG + chr8_3:2505461-2505480 Msa1269300:intron 60.0%
! GGCTTTGTGGGGGAGGGAAA+CGG + chr8_3:2505486-2505505 Msa1269300:intron 60.0%
TAGAGGACTTCGGGAGGGGA+GGG - chr8_3:2505692-2505711 None:intergenic 60.0%
ATAGAGGACTTCGGGAGGGG+AGG - chr8_3:2505693-2505712 None:intergenic 60.0%
GCTCCGTTCGGGAGTTTGGA+GGG + chr8_3:2505451-2505470 Msa1269300:intron 60.0%
CTCCGTTCGGGAGTTTGGAG+GGG + chr8_3:2505452-2505471 Msa1269300:intron 60.0%
CTCCCCTCCAAACTCCCGAA+CGG - chr8_3:2505457-2505476 None:intergenic 60.0%
GTTCGGGAGTTTGGAGGGGA+GGG + chr8_3:2505456-2505475 Msa1269300:intron 60.0%
GGAGTTTGGAGGGGAGGGAA+TGG + chr8_3:2505461-2505480 Msa1269300:intron 60.0%
! GGCTTTGTGGGGGAGGGAAA+CGG + chr8_3:2505486-2505505 Msa1269300:intron 60.0%
TAGAGGACTTCGGGAGGGGA+GGG - chr8_3:2505692-2505711 None:intergenic 60.0%
ATAGAGGACTTCGGGAGGGG+AGG - chr8_3:2505693-2505712 None:intergenic 60.0%
GGCTCCGTTCGGGAGTTTGG+AGG + chr8_3:2505450-2505469 Msa1269300:intron 65.0%
CGTTCGGGAGTTTGGAGGGG+AGG + chr8_3:2505455-2505474 Msa1269300:intron 65.0%
TTCGGGAGGGGAGGGCTTTG+GGG - chr8_3:2505684-2505703 None:intergenic 65.0%
CTTCGGGAGGGGAGGGCTTT+GGG - chr8_3:2505685-2505704 None:intergenic 65.0%
ACTTCGGGAGGGGAGGGCTT+TGG - chr8_3:2505686-2505705 None:intergenic 65.0%
CGGAGTTTGGAGGGGAAGGG+AGG - chr8_3:2505756-2505775 None:intergenic 65.0%
GGCTCCGTTCGGGAGTTTGG+AGG + chr8_3:2505450-2505469 Msa1269300:intron 65.0%
CGTTCGGGAGTTTGGAGGGG+AGG + chr8_3:2505455-2505474 Msa1269300:intron 65.0%
TTCGGGAGGGGAGGGCTTTG+GGG - chr8_3:2505684-2505703 None:intergenic 65.0%
CTTCGGGAGGGGAGGGCTTT+GGG - chr8_3:2505685-2505704 None:intergenic 65.0%
ACTTCGGGAGGGGAGGGCTT+TGG - chr8_3:2505686-2505705 None:intergenic 65.0%
CGGAGTTTGGAGGGGAAGGG+AGG - chr8_3:2505756-2505775 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 2504348 2506401 2504348 ID=Msa1269300;Name=Msa1269300
chr8_3 mRNA 2504348 2506401 2504348 ID=Msa1269300-mRNA-1;Parent=Msa1269300;Name=Msa1269300-mRNA-1;_AED=0.01;_eAED=0.01;_QI=82|1|1|1|0.5|0.33|3|275|135
chr8_3 exon 2504348 2504427 2504348 ID=Msa1269300-mRNA-1:exon:770;Parent=Msa1269300-mRNA-1
chr8_3 exon 2504785 2504931 2504785 ID=Msa1269300-mRNA-1:exon:771;Parent=Msa1269300-mRNA-1
chr8_3 exon 2505864 2506401 2505864 ID=Msa1269300-mRNA-1:exon:772;Parent=Msa1269300-mRNA-1
chr8_3 five_prime_UTR 2504348 2504427 2504348 ID=Msa1269300-mRNA-1:five_prime_utr;Parent=Msa1269300-mRNA-1
chr8_3 five_prime_UTR 2504785 2504786 2504785 ID=Msa1269300-mRNA-1:five_prime_utr;Parent=Msa1269300-mRNA-1
chr8_3 CDS 2504787 2504931 2504787 ID=Msa1269300-mRNA-1:cds;Parent=Msa1269300-mRNA-1
chr8_3 CDS 2505864 2506126 2505864 ID=Msa1269300-mRNA-1:cds;Parent=Msa1269300-mRNA-1
chr8_3 three_prime_UTR 2506127 2506401 2506127 ID=Msa1269300-mRNA-1:three_prime_utr;Parent=Msa1269300-mRNA-1
Gene Sequence

>Msa1269300

ATGTCGGCATATGAGAATGTTGTTGGTGGTAAACTGAAGCTGAAGGGAAAAGCATTGGATGTTGCTGGCGGAATCAAGAAGAAGAAAAAGAACAAAAGAAATCAACAACAGTTTTTGCAAGCAACTGAAGATGAAATCTCAGCAGGTGGAAGTACAGAACAAGCTAAAGATCCTAATGATCAAGAAGTAAATGATGGGAGTGAATTGAGCAGGGAAGAGAAGCCTGCTCATTATGATGATCATCTTACACCAGCAGAGAGGCGGTACATAGAACAGAGGGAGCAACTTGATGTTCATAGATTGGCCAAGATTTCTAATAAATCTCACCGCGATAGAATCCAGGATTTCAACCAATATCTCGCAAACATGAGCGAGCATTATGATATTCCTAAAGTTGGTCCTGGATGA

Protein sequence

>Msa1269300

MSAYENVVGGKLKLKGKALDVAGGIKKKKKNKRNQQQFLQATEDEISAGGSTEQAKDPNDQEVNDGSELSREEKPAHYDDHLTPAERRYIEQREQLDVHRLAKISNKSHRDRIQDFNQYLANMSEHYDIPKVGPG*