Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1390460 | XP_013457578.2 | 97.913 | 575 | 12 | 0 | 1 | 575 | 1 | 575 | 0.0 | 1155 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1390460 | sp|Q9LZ20|CAAT6_ARATH | 52.313 | 562 | 250 | 6 | 2 | 552 | 16 | 570 | 0.0 | 575 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1390460 | A0A396IC75 | 97.913 | 575 | 12 | 0 | 1 | 575 | 1 | 575 | 0.0 | 1155 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0045620 | Msa1390460 | 0.807990 | 3.858043e-50 | -8.615850e-47 |
Msa1371800 | Msa1390460 | 0.812877 | 3.397755e-51 | -8.615850e-47 |
Msa1376310 | Msa1390460 | 0.812902 | 3.355999e-51 | -8.615850e-47 |
Msa0623310 | Msa1390460 | 0.803477 | 3.420956e-49 | -8.615850e-47 |
Msa0206370 | Msa1390460 | 0.806888 | 6.609834e-50 | -8.615850e-47 |
Msa0223040 | Msa1390460 | 0.801244 | 9.864375e-49 | -8.615850e-47 |
Msa1255710 | Msa1390460 | 0.806102 | 9.683502e-50 | -8.615850e-47 |
Msa1256720 | Msa1390460 | 0.959685 | 1.026176e-117 | -8.615850e-47 |
Msa1042300 | Msa1390460 | 0.811125 | 8.185168e-51 | -8.615850e-47 |
Msa0260980 | Msa1390460 | 0.805040 | 1.617655e-49 | -8.615850e-47 |
Msa0264230 | Msa1390460 | 0.823723 | 1.188066e-53 | -8.615850e-47 |
Msa0302200 | Msa1390460 | 0.806422 | 8.289427e-50 | -8.615850e-47 |
Msa0336430 | Msa1390460 | 0.816807 | 4.572384e-52 | -8.615850e-47 |
Msa0336460 | Msa1390460 | 0.806090 | 9.737616e-50 | -8.615850e-47 |
Msa0336520 | Msa1390460 | 0.809216 | 2.111552e-50 | -8.615850e-47 |
Msa0339530 | Msa1390460 | 0.805885 | 1.075648e-49 | -8.615850e-47 |
Msa1206340 | Msa1390460 | 0.976816 | 1.487370e-142 | -8.615850e-47 |
Msa1206390 | Msa1390460 | 0.977288 | 1.758401e-143 | -8.615850e-47 |
Msa0876630 | Msa1390460 | 0.828970 | 6.684309e-55 | -8.615850e-47 |
Msa0978980 | Msa1390460 | 0.815644 | 8.316418e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1390460 | MtrunA17_Chr4g0055481 | 97.913 | 575 | 12 | 0 | 1 | 575 | 1 | 575 | 0.0 | 1155 |
Msa1390460 | MtrunA17_Chr1g0210461 | 49.485 | 582 | 271 | 6 | 2 | 573 | 9 | 577 | 0.0 | 569 |
Msa1390460 | MtrunA17_Chr1g0160231 | 42.473 | 558 | 301 | 6 | 3 | 551 | 27 | 573 | 3.62e-147 | 437 |
Msa1390460 | MtrunA17_Chr2g0296921 | 41.081 | 555 | 314 | 5 | 5 | 555 | 34 | 579 | 5.54e-146 | 434 |
Msa1390460 | MtrunA17_Chr8g0381021 | 41.016 | 551 | 310 | 6 | 5 | 550 | 34 | 574 | 2.91e-140 | 419 |
Msa1390460 | MtrunA17_Chr8g0381051 | 39.206 | 579 | 325 | 8 | 3 | 571 | 37 | 598 | 1.45e-138 | 415 |
Msa1390460 | MtrunA17_Chr8g0381031 | 41.304 | 552 | 308 | 6 | 5 | 550 | 35 | 576 | 7.85e-134 | 403 |
Msa1390460 | MtrunA17_Chr8g0358951 | 36.679 | 548 | 334 | 4 | 3 | 547 | 39 | 576 | 9.79e-115 | 353 |
Msa1390460 | MtrunA17_Chr7g0254011 | 37.745 | 408 | 251 | 1 | 30 | 434 | 25 | 432 | 2.63e-73 | 246 |
Msa1390460 | MtrunA17_Chr7g0254061 | 35.222 | 406 | 260 | 1 | 26 | 428 | 15 | 420 | 3.31e-72 | 243 |
Msa1390460 | MtrunA17_Chr6g0460911 | 33.661 | 407 | 258 | 4 | 33 | 434 | 36 | 435 | 5.09e-68 | 231 |
Msa1390460 | MtrunA17_Chr6g0460881 | 33.415 | 407 | 259 | 4 | 33 | 434 | 33 | 432 | 1.20e-66 | 228 |
Msa1390460 | MtrunA17_Chr6g0460901 | 34.091 | 396 | 252 | 4 | 33 | 422 | 34 | 426 | 1.37e-66 | 228 |
Msa1390460 | MtrunA17_Chr7g0215781 | 31.550 | 542 | 339 | 16 | 20 | 547 | 31 | 554 | 2.32e-64 | 220 |
Msa1390460 | MtrunA17_Chr6g0460891 | 31.618 | 408 | 265 | 5 | 30 | 431 | 23 | 422 | 2.61e-63 | 220 |
Msa1390460 | MtrunA17_Chr6g0463361 | 33.065 | 248 | 149 | 4 | 322 | 558 | 2 | 243 | 8.86e-33 | 126 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1390460 | AT5G04770.1 | 52.313 | 562 | 250 | 6 | 2 | 552 | 16 | 570 | 0.0 | 575 |
Msa1390460 | AT3G10600.1 | 50.521 | 576 | 259 | 6 | 2 | 558 | 15 | 583 | 0.0 | 553 |
Msa1390460 | AT4G21120.1 | 41.971 | 548 | 306 | 4 | 3 | 547 | 30 | 568 | 2.01e-159 | 468 |
Msa1390460 | AT5G04770.2 | 54.156 | 397 | 174 | 3 | 2 | 391 | 16 | 411 | 1.27e-147 | 432 |
Msa1390460 | AT3G10600.2 | 49.324 | 444 | 199 | 6 | 134 | 558 | 1 | 437 | 1.81e-144 | 424 |
Msa1390460 | AT5G04770.3 | 51.163 | 430 | 192 | 6 | 134 | 552 | 1 | 423 | 4.04e-141 | 416 |
Msa1390460 | AT2G34960.1 | 38.434 | 562 | 325 | 7 | 3 | 560 | 24 | 568 | 4.55e-133 | 400 |
Msa1390460 | AT1G17120.1 | 40.290 | 551 | 304 | 6 | 3 | 544 | 41 | 575 | 8.76e-124 | 377 |
Msa1390460 | AT4G21120.2 | 40.749 | 427 | 241 | 4 | 124 | 547 | 1 | 418 | 1.91e-110 | 337 |
Msa1390460 | AT3G03720.1 | 36.224 | 392 | 245 | 3 | 35 | 422 | 16 | 406 | 9.87e-75 | 249 |
Msa1390460 | AT5G36940.1 | 34.286 | 420 | 269 | 2 | 18 | 434 | 8 | 423 | 7.94e-71 | 239 |
Msa1390460 | AT1G58030.1 | 34.430 | 395 | 256 | 1 | 37 | 428 | 34 | 428 | 7.62e-70 | 237 |
Msa1390460 | AT1G05940.1 | 31.204 | 548 | 338 | 10 | 18 | 546 | 26 | 553 | 1.27e-65 | 224 |
Msa1390460 | AT1G05940.4 | 34.878 | 410 | 252 | 6 | 18 | 420 | 26 | 427 | 1.15e-61 | 212 |
Msa1390460 | AT1G05940.3 | 34.878 | 410 | 252 | 6 | 18 | 420 | 26 | 427 | 1.92e-61 | 212 |
Msa1390460 | AT1G05940.2 | 28.475 | 446 | 285 | 7 | 119 | 546 | 6 | 435 | 2.62e-40 | 152 |
Find 146 sgRNAs with CRISPR-Local
Find 498 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCCTCACTTGGTTGAATTCT+TGG | 0.073222 | tig0021343:-112848 | None:intergenic |
AGCCGAGGAGATTGAGAATT+TGG | 0.146226 | tig0021343:+116559 | Msa1390460:CDS |
CTATATATCTTGTACGGTTT+TGG | 0.184776 | tig0021343:+116759 | Msa1390460:three_prime_UTR |
GGAGAATTCTTGGGATATTT+TGG | 0.185427 | tig0021343:+113338 | Msa1390460:intron |
TCACTCTTTGCTTGTGTCAT+AGG | 0.192722 | tig0021343:+113540 | Msa1390460:CDS |
AAGTTGGTTACACTCAAATT+TGG | 0.199523 | tig0021343:-116602 | None:intergenic |
TATATGAGCACTTAGTTTCT+TGG | 0.214314 | tig0021343:-112695 | None:intergenic |
CTGTTTGAATTTCCAAACTA+TGG | 0.229022 | tig0021343:-116267 | None:intergenic |
TCAATGGCTTTCCTTAATAT+TGG | 0.256994 | tig0021343:+115676 | Msa1390460:CDS |
CCCAACTCCAACCAATATTA+AGG | 0.269543 | tig0021343:-115687 | None:intergenic |
CCTTATGCTTCTCCATAGTT+TGG | 0.287271 | tig0021343:+116255 | Msa1390460:CDS |
CCATAAGGAGCTATCCCTTT+TGG | 0.287938 | tig0021343:-114112 | None:intergenic |
AACTTTACTTTATTGCCTAA+TGG | 0.315376 | tig0021343:+114273 | Msa1390460:CDS |
TCCTTAATATTGGTTGGAGT+TGG | 0.318656 | tig0021343:+115686 | Msa1390460:CDS |
TCTCTTCTAGTTGCAATGTT+AGG | 0.325505 | tig0021343:+115754 | Msa1390460:CDS |
ACATGAAAAGGAAACTTAAT+TGG | 0.331326 | tig0021343:+112886 | Msa1390460:CDS |
TCCCATGACACAAAGGTATC+TGG | 0.331917 | tig0021343:-115782 | None:intergenic |
CTTTCCAACGCTTTGCTATA+TGG | 0.333799 | tig0021343:+116483 | Msa1390460:CDS |
TTATGATGCAGGAGAATTCT+TGG | 0.344760 | tig0021343:+113328 | Msa1390460:intron |
ATAGTGTACTTTAGTTATAT+AGG | 0.350941 | tig0021343:+114163 | Msa1390460:CDS |
GCAGTTCAAGTTCCAGTTGC+TGG | 0.352519 | tig0021343:+113068 | Msa1390460:CDS |
GTTGGAGCAGGTGCAAGTTT+AGG | 0.353177 | tig0021343:+115721 | Msa1390460:CDS |
CCAATAGGTAGGCTCTTATA+AGG | 0.355464 | tig0021343:-114226 | None:intergenic |
CATGATGGTTCCTTACAATA+AGG | 0.362306 | tig0021343:+114309 | Msa1390460:CDS |
TGTCATAATGAGGTTCAATA+TGG | 0.363868 | tig0021343:-114014 | None:intergenic |
TCCAACATGTTATAATCCTT+TGG | 0.364236 | tig0021343:-113488 | None:intergenic |
CTTCAGCTAACTAACGCATT+TGG | 0.368274 | tig0021343:-116643 | None:intergenic |
CCTGTTGCTCTTCATCAATC+TGG | 0.370196 | tig0021343:+112972 | Msa1390460:CDS |
ACTTGGTTGAATTCTTGGTC+TGG | 0.370346 | tig0021343:-112843 | None:intergenic |
AGTTGGTTACACTCAAATTT+GGG | 0.376212 | tig0021343:-116601 | None:intergenic |
GGTGTTAGAGGTGTTCTTGA+TGG | 0.391791 | tig0021343:+114133 | Msa1390460:CDS |
GTTGGTGTGTTTGTTACTAC+TGG | 0.394063 | tig0021343:+112948 | Msa1390460:CDS |
GGCTCTGTCTTTGTGCATGA+TGG | 0.401655 | tig0021343:+114294 | Msa1390460:CDS |
CTGAAAGCTCCTCCAGCAAC+TGG | 0.405724 | tig0021343:-113080 | None:intergenic |
TTTATTTCCTATATCATAGC+TGG | 0.406170 | tig0021343:+113005 | Msa1390460:CDS |
CCTTATAAGAGCCTACCTAT+TGG | 0.406403 | tig0021343:+114226 | Msa1390460:CDS |
CCAAAAGGGATAGCTCCTTA+TGG | 0.407325 | tig0021343:+114112 | Msa1390460:CDS |
CCTTAATATTGGTTGGAGTT+GGG | 0.411834 | tig0021343:+115687 | Msa1390460:CDS |
ATAGCTCCTTATGGTGTTAG+AGG | 0.412926 | tig0021343:+114121 | Msa1390460:CDS |
TGGTATGATCTTGTAGCTCT+TGG | 0.419437 | tig0021343:+112906 | Msa1390460:CDS |
CCAGATTGATGAAGAGCAAC+AGG | 0.428383 | tig0021343:-112972 | None:intergenic |
GCCGAGGAGATTGAGAATTT+GGG | 0.430127 | tig0021343:+116560 | Msa1390460:CDS |
GATTAGCATTGGCACGCTAA+TGG | 0.433590 | tig0021343:+116127 | Msa1390460:CDS |
TGGTGGGGCAAATATACTAA+TGG | 0.434674 | tig0021343:+113358 | Msa1390460:CDS |
GGGCAAGGCTTGTTCCATCT+TGG | 0.436918 | tig0021343:+115806 | Msa1390460:CDS |
TTTGGATTCATCGTTGTGGC+TGG | 0.438413 | tig0021343:+114055 | Msa1390460:CDS |
TGACAATGTTGTCATGTTGT+TGG | 0.446760 | tig0021343:-112754 | None:intergenic |
GAGAAAATAATCCCAATGTA+TGG | 0.450687 | tig0021343:+113444 | Msa1390460:CDS |
AGGTGCAAGTTTAGGTATAG+TGG | 0.451944 | tig0021343:+115729 | Msa1390460:CDS |
GAGCCTACCTATTGGAATAG+TGG | 0.452705 | tig0021343:+114234 | Msa1390460:CDS |
ACTGAACCCACTATTCCAAT+AGG | 0.453533 | tig0021343:-114241 | None:intergenic |
GCCAGATACCTTTGTGTCAT+GGG | 0.453690 | tig0021343:+115781 | Msa1390460:CDS |
TGTTGTTGGTTGTTGTAATG+TGG | 0.458265 | tig0021343:-112740 | None:intergenic |
TATGATGCAGGAGAATTCTT+GGG | 0.458515 | tig0021343:+113329 | Msa1390460:intron |
GATCTTGTAGCTCTTGGAGT+TGG | 0.460545 | tig0021343:+112912 | Msa1390460:CDS |
AGTTATTTAAGATTAACATT+TGG | 0.461337 | tig0021343:+113101 | Msa1390460:CDS |
AGTTGGGCAAGCAACATTGT+TGG | 0.465245 | tig0021343:+115703 | Msa1390460:CDS |
ATAATTGAGTTGATTAGCAT+TGG | 0.467575 | tig0021343:+116116 | Msa1390460:CDS |
TGGCTTTCCTTAATATTGGT+TGG | 0.469455 | tig0021343:+115680 | Msa1390460:CDS |
CTTGGAGTTGGAGGAATGCT+TGG | 0.469596 | tig0021343:+112924 | Msa1390460:CDS |
TGGTGGGGTCTCTTACTCTT+CGG | 0.470816 | tig0021343:+116293 | Msa1390460:CDS |
CTTGTAGCTCTTGGAGTTGG+AGG | 0.471002 | tig0021343:+112915 | Msa1390460:CDS |
GCCAAAGTACATCCTTCAAC+AGG | 0.471515 | tig0021343:+115832 | Msa1390460:CDS |
GTATGGAGAGTGGAAGTTCA+TGG | 0.471951 | tig0021343:+113461 | Msa1390460:CDS |
TGTAACCAACTTACAAACTA+AGG | 0.473407 | tig0021343:+116613 | Msa1390460:CDS |
TGTACAAGGTTGTTGTTACA+AGG | 0.475149 | tig0021343:-116359 | None:intergenic |
CCAAACTATGGAGAAGCATA+AGG | 0.477093 | tig0021343:-116255 | None:intergenic |
TTCCACCTTAGTTTGTAAGT+TGG | 0.479933 | tig0021343:-116618 | None:intergenic |
ATATGACTGACCTTATTGTA+AGG | 0.480341 | tig0021343:-114319 | None:intergenic |
GGTCTGGTGCAGACATGAAA+AGG | 0.485575 | tig0021343:+112874 | Msa1390460:CDS |
CACAAACTCCACACAGGCTT+AGG | 0.485903 | tig0021343:+112796 | Msa1390460:CDS |
ACTTCCACTCTCCATACATT+GGG | 0.486802 | tig0021343:-113455 | None:intergenic |
AAAATGTACATATATATTGT+GGG | 0.494757 | tig0021343:+116692 | Msa1390460:three_prime_UTR |
CACGCTAATGGTGTTCTACA+TGG | 0.494994 | tig0021343:+116139 | Msa1390460:CDS |
AACCAAGTGAGGCAGAGGTC+TGG | 0.496317 | tig0021343:+112858 | Msa1390460:CDS |
TCTCAAATGCTGCTGTAGCT+AGG | 0.500116 | tig0021343:+113390 | Msa1390460:CDS |
AGCCTACCTATTGGAATAGT+GGG | 0.500222 | tig0021343:+114235 | Msa1390460:CDS |
GCCTGTTGAAGGATGTACTT+TGG | 0.501517 | tig0021343:-115833 | None:intergenic |
GTTGGAGGAATGCTTGGTGT+TGG | 0.502228 | tig0021343:+112930 | Msa1390460:CDS |
GGAAATTCAAACAGCAATGG+TGG | 0.509718 | tig0021343:+116276 | Msa1390460:CDS |
GTGGAGTTTGTGAGAGTGAA+TGG | 0.509937 | tig0021343:-112785 | None:intergenic |
AGAACACCTCTAACACCATA+AGG | 0.511059 | tig0021343:-114127 | None:intergenic |
TGATATTCCAGCTATGATAT+AGG | 0.513325 | tig0021343:-113012 | None:intergenic |
GAAGGTGGCCATGGCATGAA+TGG | 0.513555 | tig0021343:-116410 | None:intergenic |
GCAAGCAACATTGTTGGAGC+AGG | 0.513760 | tig0021343:+115709 | Msa1390460:CDS |
AAGTGAGGGAGAGAAGAAAG+AGG | 0.516262 | tig0021343:-116232 | None:intergenic |
AACTTCCACTCTCCATACAT+TGG | 0.516853 | tig0021343:-113456 | None:intergenic |
AAAACTTGGTTAATCCAAAA+GGG | 0.521490 | tig0021343:+114098 | Msa1390460:CDS |
GCCAAAGGATTATAACATGT+TGG | 0.521646 | tig0021343:+113487 | Msa1390460:CDS |
ATTATGCTATATATCTTGTA+CGG | 0.522120 | tig0021343:+116753 | Msa1390460:three_prime_UTR |
AACCATGGCTGAGGAGGTCA+AGG | 0.523071 | tig0021343:+114201 | Msa1390460:CDS |
GAAATTCAAACAGCAATGGT+GGG | 0.526735 | tig0021343:+116277 | Msa1390460:CDS |
AGAAGAATGAGAGCTACTGC+TGG | 0.527933 | tig0021343:-113515 | None:intergenic |
ATGGACATTGAAGGTGGCCA+TGG | 0.537476 | tig0021343:-116419 | None:intergenic |
AGCCAGATACCTTTGTGTCA+TGG | 0.541144 | tig0021343:+115780 | Msa1390460:CDS |
GAGCATATTCTTGTTGTACA+AGG | 0.543125 | tig0021343:-116373 | None:intergenic |
AGCTTCAACCATGGCTGAGG+AGG | 0.545111 | tig0021343:+114195 | Msa1390460:CDS |
TGCACAAAGACAGAGCCATT+AGG | 0.546466 | tig0021343:-114288 | None:intergenic |
GTGTGTGTAAAGGCGGTGTA+TGG | 0.548779 | tig0021343:-116202 | None:intergenic |
AACAAGAATATGCTCAATGT+TGG | 0.550044 | tig0021343:+116381 | Msa1390460:CDS |
ATCCTTGACCTCCTCAGCCA+TGG | 0.551869 | tig0021343:-114203 | None:intergenic |
GATGATTGATTTCAGTACAA+AGG | 0.552981 | tig0021343:+113985 | Msa1390460:intron |
AGAGAAAGCAGCATATTCAA+TGG | 0.553203 | tig0021343:+115660 | Msa1390460:CDS |
TTCAGCTTCAACCATGGCTG+AGG | 0.555396 | tig0021343:+114192 | Msa1390460:CDS |
TTCAATGGAGTGCCTGTTGA+AGG | 0.556143 | tig0021343:-115844 | None:intergenic |
GGAGAAGCATAAGGAAGTGA+GGG | 0.556959 | tig0021343:-116246 | None:intergenic |
GATACCTTTGTGTCATGGGA+AGG | 0.563239 | tig0021343:+115785 | Msa1390460:CDS |
TTGAGGAAGATGGACATTGA+AGG | 0.567242 | tig0021343:-116428 | None:intergenic |
ACCCAAATTCTCAATCTCCT+CGG | 0.568939 | tig0021343:-116561 | None:intergenic |
TGGAGAAGCATAAGGAAGTG+AGG | 0.569100 | tig0021343:-116247 | None:intergenic |
AATTCAACCAAGTGAGGCAG+AGG | 0.569150 | tig0021343:+112853 | Msa1390460:CDS |
TTTGGAAATTCAAACAGCAA+TGG | 0.571143 | tig0021343:+116273 | Msa1390460:CDS |
TGTACTTTGGCTAACCAAGA+TGG | 0.571883 | tig0021343:-115820 | None:intergenic |
TACCGTCGCTATGTAATCAT+CGG | 0.577579 | tig0021343:+116179 | Msa1390460:CDS |
ATGACCATATAGCAAAGCGT+TGG | 0.577715 | tig0021343:-116487 | None:intergenic |
CTATGATTCAGCTTCAACCA+TGG | 0.580237 | tig0021343:+114186 | Msa1390460:CDS |
ATACCTTTGTGTCATGGGAA+GGG | 0.590763 | tig0021343:+115786 | Msa1390460:CDS |
TAATCCCAATGTATGGAGAG+TGG | 0.592516 | tig0021343:+113451 | Msa1390460:CDS |
CATGGAACACTGTCATAATG+AGG | 0.594067 | tig0021343:-114024 | None:intergenic |
GTTGTGGCTGGTTATTACAA+TGG | 0.594223 | tig0021343:+114067 | Msa1390460:CDS |
GTTCAAGTTCCAGTTGCTGG+AGG | 0.596218 | tig0021343:+113071 | Msa1390460:CDS |
GGAAAAGAATGCTAGCAACA+TGG | 0.601745 | tig0021343:+112817 | Msa1390460:CDS |
TGTTACAAGGCACCATGTGT+TGG | 0.603576 | tig0021343:-116346 | None:intergenic |
AGGAACAAAAGTGTGTGTAA+AGG | 0.603696 | tig0021343:-116212 | None:intergenic |
GGAAGTTCATGGATTGCCAA+AGG | 0.604127 | tig0021343:+113472 | Msa1390460:CDS |
TTTGGGTGGTGTTAATCAAG+TGG | 0.606482 | tig0021343:+116577 | Msa1390460:CDS |
GGTATGTGCCATTCATGCCA+TGG | 0.610730 | tig0021343:+116402 | Msa1390460:CDS |
TTTCTTTGGATTCATCGTTG+TGG | 0.629846 | tig0021343:+114051 | Msa1390460:CDS |
TGGGGTCTCTTACTCTTCGG+TGG | 0.630179 | tig0021343:+116296 | Msa1390460:CDS |
AACAAAAGTGTGTGTAAAGG+CGG | 0.630640 | tig0021343:-116209 | None:intergenic |
ACCAAGAATTCAACCAAGTG+AGG | 0.631416 | tig0021343:+112847 | Msa1390460:CDS |
ATATAGGAAATAAAGACTGA+AGG | 0.634540 | tig0021343:-112996 | None:intergenic |
AAATTCAAACAGCAATGGTG+GGG | 0.636518 | tig0021343:+116278 | Msa1390460:CDS |
AAATGTACATATATATTGTG+GGG | 0.640711 | tig0021343:+116693 | Msa1390460:three_prime_UTR |
AACCAACTTACAAACTAAGG+TGG | 0.646197 | tig0021343:+116616 | Msa1390460:CDS |
CACTCTCACAAACTCCACAC+AGG | 0.646429 | tig0021343:+112790 | Msa1390460:CDS |
GAGGAGATTGAGAATTTGGG+TGG | 0.655023 | tig0021343:+116563 | Msa1390460:CDS |
ACCATAAAGCACATAAAACA+TGG | 0.658020 | tig0021343:-116519 | None:intergenic |
AGGAAGATGGACATTGAAGG+TGG | 0.658680 | tig0021343:-116425 | None:intergenic |
TTTGTGTCATGGGAAGGGCA+AGG | 0.658768 | tig0021343:+115791 | Msa1390460:CDS |
TTGCCCTTCCCATGACACAA+AGG | 0.659610 | tig0021343:-115789 | None:intergenic |
GGCCGATGATTACATAGCGA+CGG | 0.666130 | tig0021343:-116181 | None:intergenic |
TCACTCTACGTATCAAGCCG+AGG | 0.689681 | tig0021343:+116544 | Msa1390460:CDS |
TGAATCCAAAGAAAATCACA+TGG | 0.692143 | tig0021343:-114042 | None:intergenic |
TATGACACAAGCAAAGAGTG+AGG | 0.719524 | tig0021343:-113538 | None:intergenic |
AACCCACTATTCCAATAGGT+AGG | 0.722428 | tig0021343:-114237 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTTAAAACTATACTAATT+AGG | + | tig0021343:113772-113791 | Msa1390460:intron | 10.0% |
!!! | ATTTTCAAAATTGTAAATAA+TGG | - | tig0021343:113911-113930 | None:intergenic | 10.0% |
!! | AAGAATGATAATTATTTATT+TGG | - | tig0021343:113958-113977 | None:intergenic | 10.0% |
!!! | ATATTTTGTCAAAAAAAAAT+TGG | - | tig0021343:114947-114966 | None:intergenic | 10.0% |
!!! | TTAAATTTTTTGATTAAATG+TGG | + | tig0021343:115133-115152 | Msa1390460:intron | 10.0% |
!!! | ATTATTTTCCTTTTTTTTTT+TGG | - | tig0021343:115232-115251 | None:intergenic | 10.0% |
!! | AAAAAAAAAAAGGAAAATAA+TGG | + | tig0021343:115231-115250 | Msa1390460:intron | 10.0% |
!! | AAAAAAAAAAGGAAAATAAT+GGG | + | tig0021343:115232-115251 | Msa1390460:intron | 10.0% |
!!! | AAATTTTCAAAAATATTTGA+TGG | - | tig0021343:115903-115922 | None:intergenic | 10.0% |
!!! | AATTTAAAACTATACTAATT+AGG | + | tig0021343:113772-113791 | Msa1390460:intron | 10.0% |
!!! | ATTTTCAAAATTGTAAATAA+TGG | - | tig0021343:113911-113930 | None:intergenic | 10.0% |
!! | AAGAATGATAATTATTTATT+TGG | - | tig0021343:113958-113977 | None:intergenic | 10.0% |
!!! | ATATTTTGTCAAAAAAAAAT+TGG | - | tig0021343:114947-114966 | None:intergenic | 10.0% |
!!! | TTAAATTTTTTGATTAAATG+TGG | + | tig0021343:115133-115152 | Msa1390460:intron | 10.0% |
!!! | ATTATTTTCCTTTTTTTTTT+TGG | - | tig0021343:115232-115251 | None:intergenic | 10.0% |
!! | AAAAAAAAAAAGGAAAATAA+TGG | + | tig0021343:115231-115250 | Msa1390460:intron | 10.0% |
!! | AAAAAAAAAAGGAAAATAAT+GGG | + | tig0021343:115232-115251 | Msa1390460:intron | 10.0% |
!!! | AAATTTTCAAAAATATTTGA+TGG | - | tig0021343:115903-115922 | None:intergenic | 10.0% |
!!! | AGTTATTTAAGATTAACATT+TGG | + | tig0021343:113101-113120 | Msa1390460:CDS | 15.0% |
!!! | ATTAGTATAGTTTTAAATTG+TGG | - | tig0021343:113771-113790 | None:intergenic | 15.0% |
!! | TTTAATTCAAATACATTGTT+AGG | - | tig0021343:114474-114493 | None:intergenic | 15.0% |
!! | TGAATGTATAATTACTAAAA+TGG | + | tig0021343:114783-114802 | Msa1390460:intron | 15.0% |
!! | TATAAAATTTAATGGAGAAT+TGG | + | tig0021343:115270-115289 | Msa1390460:intron | 15.0% |
!! | AAAAATGTACATATATATTG+TGG | + | tig0021343:116691-116710 | Msa1390460:three_prime_UTR | 15.0% |
!! | AAAATGTACATATATATTGT+GGG | + | tig0021343:116692-116711 | Msa1390460:three_prime_UTR | 15.0% |
!!! | AGTTATTTAAGATTAACATT+TGG | + | tig0021343:113101-113120 | Msa1390460:CDS | 15.0% |
!!! | ATTAGTATAGTTTTAAATTG+TGG | - | tig0021343:113771-113790 | None:intergenic | 15.0% |
!! | TTTAATTCAAATACATTGTT+AGG | - | tig0021343:114474-114493 | None:intergenic | 15.0% |
!! | TGAATGTATAATTACTAAAA+TGG | + | tig0021343:114783-114802 | Msa1390460:intron | 15.0% |
!! | TATAAAATTTAATGGAGAAT+TGG | + | tig0021343:115270-115289 | Msa1390460:intron | 15.0% |
!! | AAAAATGTACATATATATTG+TGG | + | tig0021343:116691-116710 | Msa1390460:three_prime_UTR | 15.0% |
!! | AAAATGTACATATATATTGT+GGG | + | tig0021343:116692-116711 | Msa1390460:three_prime_UTR | 15.0% |
!! | ATATCAAACTAAAAAACAGA+AGG | - | tig0021343:113604-113623 | None:intergenic | 20.0% |
!!! | TTTAGTTTGATATTGTATCA+AGG | + | tig0021343:113611-113630 | Msa1390460:intron | 20.0% |
!! | ACTATACTAATTAGGTTAAT+TGG | + | tig0021343:113780-113799 | Msa1390460:intron | 20.0% |
!! | CTATACTAATTAGGTTAATT+GGG | + | tig0021343:113781-113800 | Msa1390460:intron | 20.0% |
!! | TATACTAATTAGGTTAATTG+GGG | + | tig0021343:113782-113801 | Msa1390460:intron | 20.0% |
!!! | TTGGTGTTTTTTATAATGAA+AGG | + | tig0021343:113868-113887 | Msa1390460:intron | 20.0% |
!!! | TGTTTTTTATAATGAAAGGA+TGG | + | tig0021343:113872-113891 | Msa1390460:intron | 20.0% |
!! | ATAGTGTACTTTAGTTATAT+AGG | + | tig0021343:114163-114182 | Msa1390460:CDS | 20.0% |
!! | TATTTGAATTAAATACGTCT+AGG | + | tig0021343:114481-114500 | Msa1390460:intron | 20.0% |
!!! | TATGTTAGTATTTTTCTTCA+GGG | - | tig0021343:114514-114533 | None:intergenic | 20.0% |
!!! | TTATGTTAGTATTTTTCTTC+AGG | - | tig0021343:114515-114534 | None:intergenic | 20.0% |
!! | TTATTAGTTGAACAATGAAT+TGG | + | tig0021343:114572-114591 | Msa1390460:intron | 20.0% |
!! | ATATAAATTATGTGTGTGTT+TGG | + | tig0021343:114601-114620 | Msa1390460:intron | 20.0% |
!! | TGAAAGAATTGATATATGTT+TGG | + | tig0021343:114693-114712 | Msa1390460:intron | 20.0% |
!!! | GAACTGTATTTTTTCTTTTT+TGG | - | tig0021343:115035-115054 | None:intergenic | 20.0% |
!! | TGTATAAAATATCCAAAACT+TGG | + | tig0021343:115068-115087 | Msa1390460:intron | 20.0% |
!!! | TCTTGACCATAAATATTTTT+TGG | + | tig0021343:115095-115114 | Msa1390460:intron | 20.0% |
!!! | CTTGACCATAAATATTTTTT+GGG | + | tig0021343:115096-115115 | Msa1390460:intron | 20.0% |
!!! | TTGACCATAAATATTTTTTG+GGG | + | tig0021343:115097-115116 | Msa1390460:intron | 20.0% |
!! | TTAAATACAAACCAAAATGA+AGG | + | tig0021343:115165-115184 | Msa1390460:intron | 20.0% |
!!! | AAGCTATATATTCTTTGAAA+TGG | + | tig0021343:115625-115644 | Msa1390460:intron | 20.0% |
!! | TTAGTTAATTGTCTTATCTT+TGG | + | tig0021343:115949-115968 | Msa1390460:intron | 20.0% |
!! | TAGTTAATTGTCTTATCTTT+GGG | + | tig0021343:115950-115969 | Msa1390460:intron | 20.0% |
!! | AAATGTACATATATATTGTG+GGG | + | tig0021343:116693-116712 | Msa1390460:three_prime_UTR | 20.0% |
!! | ATTATGCTATATATCTTGTA+CGG | + | tig0021343:116753-116772 | Msa1390460:three_prime_UTR | 20.0% |
!! | ATATCAAACTAAAAAACAGA+AGG | - | tig0021343:113604-113623 | None:intergenic | 20.0% |
!!! | TTTAGTTTGATATTGTATCA+AGG | + | tig0021343:113611-113630 | Msa1390460:intron | 20.0% |
!! | ACTATACTAATTAGGTTAAT+TGG | + | tig0021343:113780-113799 | Msa1390460:intron | 20.0% |
!! | CTATACTAATTAGGTTAATT+GGG | + | tig0021343:113781-113800 | Msa1390460:intron | 20.0% |
!! | TATACTAATTAGGTTAATTG+GGG | + | tig0021343:113782-113801 | Msa1390460:intron | 20.0% |
!!! | TTGGTGTTTTTTATAATGAA+AGG | + | tig0021343:113868-113887 | Msa1390460:intron | 20.0% |
!!! | TGTTTTTTATAATGAAAGGA+TGG | + | tig0021343:113872-113891 | Msa1390460:intron | 20.0% |
!! | ATAGTGTACTTTAGTTATAT+AGG | + | tig0021343:114163-114182 | Msa1390460:CDS | 20.0% |
!! | TATTTGAATTAAATACGTCT+AGG | + | tig0021343:114481-114500 | Msa1390460:intron | 20.0% |
!!! | TATGTTAGTATTTTTCTTCA+GGG | - | tig0021343:114514-114533 | None:intergenic | 20.0% |
!!! | TTATGTTAGTATTTTTCTTC+AGG | - | tig0021343:114515-114534 | None:intergenic | 20.0% |
!! | TTATTAGTTGAACAATGAAT+TGG | + | tig0021343:114572-114591 | Msa1390460:intron | 20.0% |
!! | ATATAAATTATGTGTGTGTT+TGG | + | tig0021343:114601-114620 | Msa1390460:intron | 20.0% |
!! | TGAAAGAATTGATATATGTT+TGG | + | tig0021343:114693-114712 | Msa1390460:intron | 20.0% |
!!! | GAACTGTATTTTTTCTTTTT+TGG | - | tig0021343:115035-115054 | None:intergenic | 20.0% |
!! | TGTATAAAATATCCAAAACT+TGG | + | tig0021343:115068-115087 | Msa1390460:intron | 20.0% |
!!! | TCTTGACCATAAATATTTTT+TGG | + | tig0021343:115095-115114 | Msa1390460:intron | 20.0% |
!!! | CTTGACCATAAATATTTTTT+GGG | + | tig0021343:115096-115115 | Msa1390460:intron | 20.0% |
!!! | TTGACCATAAATATTTTTTG+GGG | + | tig0021343:115097-115116 | Msa1390460:intron | 20.0% |
!! | TTAAATACAAACCAAAATGA+AGG | + | tig0021343:115165-115184 | Msa1390460:intron | 20.0% |
!!! | AAGCTATATATTCTTTGAAA+TGG | + | tig0021343:115625-115644 | Msa1390460:intron | 20.0% |
!! | TTAGTTAATTGTCTTATCTT+TGG | + | tig0021343:115949-115968 | Msa1390460:intron | 20.0% |
!! | TAGTTAATTGTCTTATCTTT+GGG | + | tig0021343:115950-115969 | Msa1390460:intron | 20.0% |
!! | AAATGTACATATATATTGTG+GGG | + | tig0021343:116693-116712 | Msa1390460:three_prime_UTR | 20.0% |
!! | ATTATGCTATATATCTTGTA+CGG | + | tig0021343:116753-116772 | Msa1390460:three_prime_UTR | 20.0% |
! | ACATGAAAAGGAAACTTAAT+TGG | + | tig0021343:112886-112905 | Msa1390460:CDS | 25.0% |
! | ATATAGGAAATAAAGACTGA+AGG | - | tig0021343:112999-113018 | None:intergenic | 25.0% |
! | TTTATTTCCTATATCATAGC+TGG | + | tig0021343:113005-113024 | Msa1390460:CDS | 25.0% |
!!! | GAATATTTGAGTTTTGCTTT+TGG | + | tig0021343:113422-113441 | Msa1390460:CDS | 25.0% |
! | CTTCAAAATCCTTTATATTG+CGG | + | tig0021343:113738-113757 | Msa1390460:intron | 25.0% |
!! | TTTTGGATTAACCAAGTTTT+TGG | - | tig0021343:114098-114117 | None:intergenic | 25.0% |
! | AAAAACTTGGTTAATCCAAA+AGG | + | tig0021343:114097-114116 | Msa1390460:CDS | 25.0% |
! | AAAACTTGGTTAATCCAAAA+GGG | + | tig0021343:114098-114117 | Msa1390460:CDS | 25.0% |
! | AACTTTACTTTATTGCCTAA+TGG | + | tig0021343:114273-114292 | Msa1390460:CDS | 25.0% |
! | AATTCAAATACATTGTTAGG+CGG | - | tig0021343:114471-114490 | None:intergenic | 25.0% |
! | TAAAGAGAATGAATGTTGTT+TGG | + | tig0021343:114737-114756 | Msa1390460:intron | 25.0% |
!! | AAGTTAAATAATAATGGAGC+TGG | + | tig0021343:115006-115025 | Msa1390460:intron | 25.0% |
! | TTAGCCCCAAAAAATATTTA+TGG | - | tig0021343:115104-115123 | None:intergenic | 25.0% |
!!! | AATATTTTTTGGGGCTAATT+TGG | + | tig0021343:115106-115125 | Msa1390460:intron | 25.0% |
!! | TTATCAATTCTCCTTCATTT+TGG | - | tig0021343:115179-115198 | None:intergenic | 25.0% |
! | AAATGAAGGAGAATTGATAA+AGG | + | tig0021343:115179-115198 | Msa1390460:intron | 25.0% |
! | GAATTGATAAAGGACAATAA+AGG | + | tig0021343:115189-115208 | Msa1390460:intron | 25.0% |
! | AGGACAATAAAGGAAAATAA+TGG | + | tig0021343:115199-115218 | Msa1390460:intron | 25.0% |
! | GGACAATAAAGGAAAATAAT+GGG | + | tig0021343:115200-115219 | Msa1390460:intron | 25.0% |
!!! | AATTGCCTTTTTCAATTTTG+AGG | + | tig0021343:115388-115407 | Msa1390460:intron | 25.0% |
! | AGTTAATTGTCTTATCTTTG+GGG | + | tig0021343:115951-115970 | Msa1390460:intron | 25.0% |
!!! | ATAATTGAGTTGATTAGCAT+TGG | + | tig0021343:116116-116135 | Msa1390460:CDS | 25.0% |
!!! | TACATTTTTAGTGTCTATGT+AGG | - | tig0021343:116680-116699 | None:intergenic | 25.0% |
!! | GTAGAATTGATGTTTTCTAA+AGG | + | tig0021343:116715-116734 | Msa1390460:three_prime_UTR | 25.0% |
!! | TATATATCTTGTACGGTTTT+GGG | + | tig0021343:116760-116779 | Msa1390460:three_prime_UTR | 25.0% |
! | ACATGAAAAGGAAACTTAAT+TGG | + | tig0021343:112886-112905 | Msa1390460:CDS | 25.0% |
! | ATATAGGAAATAAAGACTGA+AGG | - | tig0021343:112999-113018 | None:intergenic | 25.0% |
! | TTTATTTCCTATATCATAGC+TGG | + | tig0021343:113005-113024 | Msa1390460:CDS | 25.0% |
!!! | GAATATTTGAGTTTTGCTTT+TGG | + | tig0021343:113422-113441 | Msa1390460:CDS | 25.0% |
! | CTTCAAAATCCTTTATATTG+CGG | + | tig0021343:113738-113757 | Msa1390460:intron | 25.0% |
!! | TTTTGGATTAACCAAGTTTT+TGG | - | tig0021343:114098-114117 | None:intergenic | 25.0% |
! | AAAAACTTGGTTAATCCAAA+AGG | + | tig0021343:114097-114116 | Msa1390460:CDS | 25.0% |
! | AAAACTTGGTTAATCCAAAA+GGG | + | tig0021343:114098-114117 | Msa1390460:CDS | 25.0% |
! | AACTTTACTTTATTGCCTAA+TGG | + | tig0021343:114273-114292 | Msa1390460:CDS | 25.0% |
! | AATTCAAATACATTGTTAGG+CGG | - | tig0021343:114471-114490 | None:intergenic | 25.0% |
! | TAAAGAGAATGAATGTTGTT+TGG | + | tig0021343:114737-114756 | Msa1390460:intron | 25.0% |
!! | AAGTTAAATAATAATGGAGC+TGG | + | tig0021343:115006-115025 | Msa1390460:intron | 25.0% |
! | TTAGCCCCAAAAAATATTTA+TGG | - | tig0021343:115104-115123 | None:intergenic | 25.0% |
!!! | AATATTTTTTGGGGCTAATT+TGG | + | tig0021343:115106-115125 | Msa1390460:intron | 25.0% |
!! | TTATCAATTCTCCTTCATTT+TGG | - | tig0021343:115179-115198 | None:intergenic | 25.0% |
! | AAATGAAGGAGAATTGATAA+AGG | + | tig0021343:115179-115198 | Msa1390460:intron | 25.0% |
! | GAATTGATAAAGGACAATAA+AGG | + | tig0021343:115189-115208 | Msa1390460:intron | 25.0% |
! | AGGACAATAAAGGAAAATAA+TGG | + | tig0021343:115199-115218 | Msa1390460:intron | 25.0% |
! | GGACAATAAAGGAAAATAAT+GGG | + | tig0021343:115200-115219 | Msa1390460:intron | 25.0% |
!!! | AATTGCCTTTTTCAATTTTG+AGG | + | tig0021343:115388-115407 | Msa1390460:intron | 25.0% |
! | AGTTAATTGTCTTATCTTTG+GGG | + | tig0021343:115951-115970 | Msa1390460:intron | 25.0% |
!!! | ATAATTGAGTTGATTAGCAT+TGG | + | tig0021343:116116-116135 | Msa1390460:CDS | 25.0% |
!!! | TACATTTTTAGTGTCTATGT+AGG | - | tig0021343:116680-116699 | None:intergenic | 25.0% |
!! | GTAGAATTGATGTTTTCTAA+AGG | + | tig0021343:116715-116734 | Msa1390460:three_prime_UTR | 25.0% |
!! | TATATATCTTGTACGGTTTT+GGG | + | tig0021343:116760-116779 | Msa1390460:three_prime_UTR | 25.0% |
TGATATTCCAGCTATGATAT+AGG | - | tig0021343:113015-113034 | None:intergenic | 30.0% | |
!!! | TCTTTTTTTGCTTATGATGC+AGG | + | tig0021343:113317-113336 | Msa1390460:intron | 30.0% |
!!! | AATTCTTGGGATATTTTGGT+GGG | + | tig0021343:113342-113361 | Msa1390460:CDS | 30.0% |
GAGAAAATAATCCCAATGTA+TGG | + | tig0021343:113444-113463 | Msa1390460:CDS | 30.0% | |
TCCAACATGTTATAATCCTT+TGG | - | tig0021343:113491-113510 | None:intergenic | 30.0% | |
TGCAAAATGCGAAAAAAATG+TGG | + | tig0021343:113675-113694 | Msa1390460:intron | 30.0% | |
AATATCCACCCAATGAAATA+AGG | - | tig0021343:113810-113829 | None:intergenic | 30.0% | |
! | GATGATTGATTTCAGTACAA+AGG | + | tig0021343:113985-114004 | Msa1390460:intron | 30.0% |
TGTCATAATGAGGTTCAATA+TGG | - | tig0021343:114017-114036 | None:intergenic | 30.0% | |
TGAATCCAAAGAAAATCACA+TGG | - | tig0021343:114045-114064 | None:intergenic | 30.0% | |
ATATGACTGACCTTATTGTA+AGG | - | tig0021343:114322-114341 | None:intergenic | 30.0% | |
! | GCTTTGGATAGAATTGATTA+TGG | + | tig0021343:114628-114647 | Msa1390460:intron | 30.0% |
GGTGTTCACCAAAAAAAAAA+AGG | + | tig0021343:115221-115240 | Msa1390460:intron | 30.0% | |
! | TTCTAGTTAACTCAAAAGCT+AGG | + | tig0021343:115293-115312 | Msa1390460:intron | 30.0% |
! | AAGGCAATTTTTCACATGTT+TGG | - | tig0021343:115377-115396 | None:intergenic | 30.0% |
TAGAGCCTCAAAATTGAAAA+AGG | - | tig0021343:115396-115415 | None:intergenic | 30.0% | |
TTAATTGCTTTACCTCTAGA+AGG | - | tig0021343:115505-115524 | None:intergenic | 30.0% | |
TCAATGGCTTTCCTTAATAT+TGG | + | tig0021343:115676-115695 | Msa1390460:CDS | 30.0% | |
! | AAAAAGATAGTGGCATTCAA+TGG | - | tig0021343:115862-115881 | None:intergenic | 30.0% |
! | ATTGAATGCCACTATCTTTT+TGG | + | tig0021343:115861-115880 | Msa1390460:CDS | 30.0% |
! | TTGAATGCCACTATCTTTTT+GGG | + | tig0021343:115862-115881 | Msa1390460:CDS | 30.0% |
CTGTTTGAATTTCCAAACTA+TGG | - | tig0021343:116270-116289 | None:intergenic | 30.0% | |
TTTGGAAATTCAAACAGCAA+TGG | + | tig0021343:116273-116292 | Msa1390460:CDS | 30.0% | |
AAAAACTGTGATTGTGATCA+TGG | - | tig0021343:116324-116343 | None:intergenic | 30.0% | |
AACAAGAATATGCTCAATGT+TGG | + | tig0021343:116381-116400 | Msa1390460:CDS | 30.0% | |
TAGTCATGAGAAAAACATTG+AGG | - | tig0021343:116448-116467 | None:intergenic | 30.0% | |
! | ACCATGTTTTATGTGCTTTA+TGG | + | tig0021343:116518-116537 | Msa1390460:CDS | 30.0% |
ACCATAAAGCACATAAAACA+TGG | - | tig0021343:116522-116541 | None:intergenic | 30.0% | |
AGTTGGTTACACTCAAATTT+GGG | - | tig0021343:116604-116623 | None:intergenic | 30.0% | |
! | AAGTTGGTTACACTCAAATT+TGG | - | tig0021343:116605-116624 | None:intergenic | 30.0% |
TGTAACCAACTTACAAACTA+AGG | + | tig0021343:116613-116632 | Msa1390460:CDS | 30.0% | |
! | CTATATATCTTGTACGGTTT+TGG | + | tig0021343:116759-116778 | Msa1390460:three_prime_UTR | 30.0% |
TGATATTCCAGCTATGATAT+AGG | - | tig0021343:113015-113034 | None:intergenic | 30.0% | |
!!! | TCTTTTTTTGCTTATGATGC+AGG | + | tig0021343:113317-113336 | Msa1390460:intron | 30.0% |
!!! | AATTCTTGGGATATTTTGGT+GGG | + | tig0021343:113342-113361 | Msa1390460:CDS | 30.0% |
GAGAAAATAATCCCAATGTA+TGG | + | tig0021343:113444-113463 | Msa1390460:CDS | 30.0% | |
TCCAACATGTTATAATCCTT+TGG | - | tig0021343:113491-113510 | None:intergenic | 30.0% | |
TGCAAAATGCGAAAAAAATG+TGG | + | tig0021343:113675-113694 | Msa1390460:intron | 30.0% | |
AATATCCACCCAATGAAATA+AGG | - | tig0021343:113810-113829 | None:intergenic | 30.0% | |
! | GATGATTGATTTCAGTACAA+AGG | + | tig0021343:113985-114004 | Msa1390460:intron | 30.0% |
TGTCATAATGAGGTTCAATA+TGG | - | tig0021343:114017-114036 | None:intergenic | 30.0% | |
TGAATCCAAAGAAAATCACA+TGG | - | tig0021343:114045-114064 | None:intergenic | 30.0% | |
ATATGACTGACCTTATTGTA+AGG | - | tig0021343:114322-114341 | None:intergenic | 30.0% | |
! | GCTTTGGATAGAATTGATTA+TGG | + | tig0021343:114628-114647 | Msa1390460:intron | 30.0% |
GGTGTTCACCAAAAAAAAAA+AGG | + | tig0021343:115221-115240 | Msa1390460:intron | 30.0% | |
! | TTCTAGTTAACTCAAAAGCT+AGG | + | tig0021343:115293-115312 | Msa1390460:intron | 30.0% |
! | AAGGCAATTTTTCACATGTT+TGG | - | tig0021343:115377-115396 | None:intergenic | 30.0% |
TAGAGCCTCAAAATTGAAAA+AGG | - | tig0021343:115396-115415 | None:intergenic | 30.0% | |
TTAATTGCTTTACCTCTAGA+AGG | - | tig0021343:115505-115524 | None:intergenic | 30.0% | |
TCAATGGCTTTCCTTAATAT+TGG | + | tig0021343:115676-115695 | Msa1390460:CDS | 30.0% | |
! | AAAAAGATAGTGGCATTCAA+TGG | - | tig0021343:115862-115881 | None:intergenic | 30.0% |
! | ATTGAATGCCACTATCTTTT+TGG | + | tig0021343:115861-115880 | Msa1390460:CDS | 30.0% |
! | TTGAATGCCACTATCTTTTT+GGG | + | tig0021343:115862-115881 | Msa1390460:CDS | 30.0% |
CTGTTTGAATTTCCAAACTA+TGG | - | tig0021343:116270-116289 | None:intergenic | 30.0% | |
TTTGGAAATTCAAACAGCAA+TGG | + | tig0021343:116273-116292 | Msa1390460:CDS | 30.0% | |
AAAAACTGTGATTGTGATCA+TGG | - | tig0021343:116324-116343 | None:intergenic | 30.0% | |
AACAAGAATATGCTCAATGT+TGG | + | tig0021343:116381-116400 | Msa1390460:CDS | 30.0% | |
TAGTCATGAGAAAAACATTG+AGG | - | tig0021343:116448-116467 | None:intergenic | 30.0% | |
! | ACCATGTTTTATGTGCTTTA+TGG | + | tig0021343:116518-116537 | Msa1390460:CDS | 30.0% |
ACCATAAAGCACATAAAACA+TGG | - | tig0021343:116522-116541 | None:intergenic | 30.0% | |
AGTTGGTTACACTCAAATTT+GGG | - | tig0021343:116604-116623 | None:intergenic | 30.0% | |
! | AAGTTGGTTACACTCAAATT+TGG | - | tig0021343:116605-116624 | None:intergenic | 30.0% |
TGTAACCAACTTACAAACTA+AGG | + | tig0021343:116613-116632 | Msa1390460:CDS | 30.0% | |
! | CTATATATCTTGTACGGTTT+TGG | + | tig0021343:116759-116778 | Msa1390460:three_prime_UTR | 30.0% |
! | TGTTGTTGGTTGTTGTAATG+TGG | - | tig0021343:112743-112762 | None:intergenic | 35.0% |
TGACAATGTTGTCATGTTGT+TGG | - | tig0021343:112757-112776 | None:intergenic | 35.0% | |
TTATGATGCAGGAGAATTCT+TGG | + | tig0021343:113328-113347 | Msa1390460:intron | 35.0% | |
TATGATGCAGGAGAATTCTT+GGG | + | tig0021343:113329-113348 | Msa1390460:intron | 35.0% | |
! | GGAGAATTCTTGGGATATTT+TGG | + | tig0021343:113338-113357 | Msa1390460:intron | 35.0% |
!! | GAATTCTTGGGATATTTTGG+TGG | + | tig0021343:113341-113360 | Msa1390460:CDS | 35.0% |
!!! | ATTCTTGGGATATTTTGGTG+GGG | + | tig0021343:113343-113362 | Msa1390460:CDS | 35.0% |
GCCAAAGGATTATAACATGT+TGG | + | tig0021343:113487-113506 | Msa1390460:CDS | 35.0% | |
CGAAAAAAATGTGGTTGACA+TGG | + | tig0021343:113684-113703 | Msa1390460:intron | 35.0% | |
! | ATTGGGGAACCTTATTTCAT+TGG | + | tig0021343:113798-113817 | Msa1390460:intron | 35.0% |
! | TTGGGGAACCTTATTTCATT+GGG | + | tig0021343:113799-113818 | Msa1390460:intron | 35.0% |
! | GTGTTCCATGTGATTTTCTT+TGG | + | tig0021343:114037-114056 | Msa1390460:CDS | 35.0% |
TTTCTTTGGATTCATCGTTG+TGG | + | tig0021343:114051-114070 | Msa1390460:CDS | 35.0% | |
!! | CAATGGAAGTACCAAAAACT+TGG | + | tig0021343:114084-114103 | Msa1390460:CDS | 35.0% |
CATGATGGTTCCTTACAATA+AGG | + | tig0021343:114309-114328 | Msa1390460:CDS | 35.0% | |
TAGAATAAGCTGAACCAAAC+AGG | + | tig0021343:115432-115451 | Msa1390460:intron | 35.0% | |
CTAGTTAGAATTCCTTCTAG+AGG | + | tig0021343:115490-115509 | Msa1390460:intron | 35.0% | |
AGAGAAAGCAGCATATTCAA+TGG | + | tig0021343:115660-115679 | Msa1390460:CDS | 35.0% | |
TGGCTTTCCTTAATATTGGT+TGG | + | tig0021343:115680-115699 | Msa1390460:CDS | 35.0% | |
! | TCCTTAATATTGGTTGGAGT+TGG | + | tig0021343:115686-115705 | Msa1390460:CDS | 35.0% |
! | CCTTAATATTGGTTGGAGTT+GGG | + | tig0021343:115687-115706 | Msa1390460:CDS | 35.0% |
! | TCTCTTCTAGTTGCAATGTT+AGG | + | tig0021343:115754-115773 | Msa1390460:CDS | 35.0% |
TTGCTTACCCAAAAAGATAG+TGG | - | tig0021343:115872-115891 | None:intergenic | 35.0% | |
TCAAGCTCTTATCATTAAGC+CGG | - | tig0021343:115979-115998 | None:intergenic | 35.0% | |
ATCAGTTCATTTATTGACGC+AGG | + | tig0021343:116050-116069 | Msa1390460:intron | 35.0% | |
! | AACAAAAGTGTGTGTAAAGG+CGG | - | tig0021343:116212-116231 | None:intergenic | 35.0% |
! | AGGAACAAAAGTGTGTGTAA+AGG | - | tig0021343:116215-116234 | None:intergenic | 35.0% |
GAAATTCAAACAGCAATGGT+GGG | + | tig0021343:116277-116296 | Msa1390460:CDS | 35.0% | |
AAATTCAAACAGCAATGGTG+GGG | + | tig0021343:116278-116297 | Msa1390460:CDS | 35.0% | |
!!! | CACAGTTTTTTTCCAACACA+TGG | + | tig0021343:116334-116353 | Msa1390460:CDS | 35.0% |
! | TGTACAAGGTTGTTGTTACA+AGG | - | tig0021343:116362-116381 | None:intergenic | 35.0% |
! | GAGCATATTCTTGTTGTACA+AGG | - | tig0021343:116376-116395 | None:intergenic | 35.0% |
GAGAAAAACATTGAGGAAGA+TGG | - | tig0021343:116441-116460 | None:intergenic | 35.0% | |
!!! | TTGGAAAGAGAGTGTTTTGA+GGG | - | tig0021343:116471-116490 | None:intergenic | 35.0% |
AACCAACTTACAAACTAAGG+TGG | + | tig0021343:116616-116635 | Msa1390460:CDS | 35.0% | |
!! | TTCCACCTTAGTTTGTAAGT+TGG | - | tig0021343:116621-116640 | None:intergenic | 35.0% |
! | TGTTGTTGGTTGTTGTAATG+TGG | - | tig0021343:112743-112762 | None:intergenic | 35.0% |
TGACAATGTTGTCATGTTGT+TGG | - | tig0021343:112757-112776 | None:intergenic | 35.0% | |
TTATGATGCAGGAGAATTCT+TGG | + | tig0021343:113328-113347 | Msa1390460:intron | 35.0% | |
TATGATGCAGGAGAATTCTT+GGG | + | tig0021343:113329-113348 | Msa1390460:intron | 35.0% | |
! | GGAGAATTCTTGGGATATTT+TGG | + | tig0021343:113338-113357 | Msa1390460:intron | 35.0% |
!! | GAATTCTTGGGATATTTTGG+TGG | + | tig0021343:113341-113360 | Msa1390460:CDS | 35.0% |
!!! | ATTCTTGGGATATTTTGGTG+GGG | + | tig0021343:113343-113362 | Msa1390460:CDS | 35.0% |
GCCAAAGGATTATAACATGT+TGG | + | tig0021343:113487-113506 | Msa1390460:CDS | 35.0% | |
CGAAAAAAATGTGGTTGACA+TGG | + | tig0021343:113684-113703 | Msa1390460:intron | 35.0% | |
! | ATTGGGGAACCTTATTTCAT+TGG | + | tig0021343:113798-113817 | Msa1390460:intron | 35.0% |
! | TTGGGGAACCTTATTTCATT+GGG | + | tig0021343:113799-113818 | Msa1390460:intron | 35.0% |
! | GTGTTCCATGTGATTTTCTT+TGG | + | tig0021343:114037-114056 | Msa1390460:CDS | 35.0% |
TTTCTTTGGATTCATCGTTG+TGG | + | tig0021343:114051-114070 | Msa1390460:CDS | 35.0% | |
!! | CAATGGAAGTACCAAAAACT+TGG | + | tig0021343:114084-114103 | Msa1390460:CDS | 35.0% |
CATGATGGTTCCTTACAATA+AGG | + | tig0021343:114309-114328 | Msa1390460:CDS | 35.0% | |
TAGAATAAGCTGAACCAAAC+AGG | + | tig0021343:115432-115451 | Msa1390460:intron | 35.0% | |
CTAGTTAGAATTCCTTCTAG+AGG | + | tig0021343:115490-115509 | Msa1390460:intron | 35.0% | |
AGAGAAAGCAGCATATTCAA+TGG | + | tig0021343:115660-115679 | Msa1390460:CDS | 35.0% | |
TGGCTTTCCTTAATATTGGT+TGG | + | tig0021343:115680-115699 | Msa1390460:CDS | 35.0% | |
! | TCCTTAATATTGGTTGGAGT+TGG | + | tig0021343:115686-115705 | Msa1390460:CDS | 35.0% |
! | CCTTAATATTGGTTGGAGTT+GGG | + | tig0021343:115687-115706 | Msa1390460:CDS | 35.0% |
! | TCTCTTCTAGTTGCAATGTT+AGG | + | tig0021343:115754-115773 | Msa1390460:CDS | 35.0% |
TTGCTTACCCAAAAAGATAG+TGG | - | tig0021343:115872-115891 | None:intergenic | 35.0% | |
TCAAGCTCTTATCATTAAGC+CGG | - | tig0021343:115979-115998 | None:intergenic | 35.0% | |
ATCAGTTCATTTATTGACGC+AGG | + | tig0021343:116050-116069 | Msa1390460:intron | 35.0% | |
! | AACAAAAGTGTGTGTAAAGG+CGG | - | tig0021343:116212-116231 | None:intergenic | 35.0% |
! | AGGAACAAAAGTGTGTGTAA+AGG | - | tig0021343:116215-116234 | None:intergenic | 35.0% |
GAAATTCAAACAGCAATGGT+GGG | + | tig0021343:116277-116296 | Msa1390460:CDS | 35.0% | |
AAATTCAAACAGCAATGGTG+GGG | + | tig0021343:116278-116297 | Msa1390460:CDS | 35.0% | |
!!! | CACAGTTTTTTTCCAACACA+TGG | + | tig0021343:116334-116353 | Msa1390460:CDS | 35.0% |
! | TGTACAAGGTTGTTGTTACA+AGG | - | tig0021343:116362-116381 | None:intergenic | 35.0% |
! | GAGCATATTCTTGTTGTACA+AGG | - | tig0021343:116376-116395 | None:intergenic | 35.0% |
GAGAAAAACATTGAGGAAGA+TGG | - | tig0021343:116441-116460 | None:intergenic | 35.0% | |
!!! | TTGGAAAGAGAGTGTTTTGA+GGG | - | tig0021343:116471-116490 | None:intergenic | 35.0% |
AACCAACTTACAAACTAAGG+TGG | + | tig0021343:116616-116635 | Msa1390460:CDS | 35.0% | |
!! | TTCCACCTTAGTTTGTAAGT+TGG | - | tig0021343:116621-116640 | None:intergenic | 35.0% |
! | ATTCTTTTCCTAAGCCTGTG+TGG | - | tig0021343:112807-112826 | None:intergenic | 40.0% |
GGAAAAGAATGCTAGCAACA+TGG | + | tig0021343:112817-112836 | Msa1390460:CDS | 40.0% | |
ACTTGGTTGAATTCTTGGTC+TGG | - | tig0021343:112846-112865 | None:intergenic | 40.0% | |
ACCAAGAATTCAACCAAGTG+AGG | + | tig0021343:112847-112866 | Msa1390460:CDS | 40.0% | |
TGGTATGATCTTGTAGCTCT+TGG | + | tig0021343:112906-112925 | Msa1390460:CDS | 40.0% | |
! | GTTGGTGTGTTTGTTACTAC+TGG | + | tig0021343:112948-112967 | Msa1390460:CDS | 40.0% |
TGGTGGGGCAAATATACTAA+TGG | + | tig0021343:113358-113377 | Msa1390460:CDS | 40.0% | |
TAATCCCAATGTATGGAGAG+TGG | + | tig0021343:113451-113470 | Msa1390460:CDS | 40.0% | |
ACTTCCACTCTCCATACATT+GGG | - | tig0021343:113458-113477 | None:intergenic | 40.0% | |
AACTTCCACTCTCCATACAT+TGG | - | tig0021343:113459-113478 | None:intergenic | 40.0% | |
TATGACACAAGCAAAGAGTG+AGG | - | tig0021343:113541-113560 | None:intergenic | 40.0% | |
TCACTCTTTGCTTGTGTCAT+AGG | + | tig0021343:113540-113559 | Msa1390460:CDS | 40.0% | |
!!! | GGATTTTGAAGTCTCTGCAA+CGG | - | tig0021343:113729-113748 | None:intergenic | 40.0% |
TGTGACAGCTAACACAAACT+TGG | + | tig0021343:113849-113868 | Msa1390460:intron | 40.0% | |
CATGGAACACTGTCATAATG+AGG | - | tig0021343:114027-114046 | None:intergenic | 40.0% | |
! | GTTGTGGCTGGTTATTACAA+TGG | + | tig0021343:114067-114086 | Msa1390460:CDS | 40.0% |
! | ATAGCTCCTTATGGTGTTAG+AGG | + | tig0021343:114121-114140 | Msa1390460:CDS | 40.0% |
AGAACACCTCTAACACCATA+AGG | - | tig0021343:114130-114149 | None:intergenic | 40.0% | |
CTATGATTCAGCTTCAACCA+TGG | + | tig0021343:114186-114205 | Msa1390460:CDS | 40.0% | |
CCAATAGGTAGGCTCTTATA+AGG | - | tig0021343:114229-114248 | None:intergenic | 40.0% | |
CCTTATAAGAGCCTACCTAT+TGG | + | tig0021343:114226-114245 | Msa1390460:CDS | 40.0% | |
AGCCTACCTATTGGAATAGT+GGG | + | tig0021343:114235-114254 | Msa1390460:CDS | 40.0% | |
AACCCACTATTCCAATAGGT+AGG | - | tig0021343:114240-114259 | None:intergenic | 40.0% | |
ACTGAACCCACTATTCCAAT+AGG | - | tig0021343:114244-114263 | None:intergenic | 40.0% | |
! | GGTCAAGAGTTACCAAGTTT+TGG | - | tig0021343:115083-115102 | None:intergenic | 40.0% |
CTCTTCTGCAAAAGCTATTC+TGG | - | tig0021343:115333-115352 | None:intergenic | 40.0% | |
! | ATTCTAGTTACGAGCCTGTT+TGG | - | tig0021343:115449-115468 | None:intergenic | 40.0% |
CCCAACTCCAACCAATATTA+AGG | - | tig0021343:115690-115709 | None:intergenic | 40.0% | |
AGGTGCAAGTTTAGGTATAG+TGG | + | tig0021343:115729-115748 | Msa1390460:CDS | 40.0% | |
ATACCTTTGTGTCATGGGAA+GGG | + | tig0021343:115786-115805 | Msa1390460:CDS | 40.0% | |
TGTACTTTGGCTAACCAAGA+TGG | - | tig0021343:115823-115842 | None:intergenic | 40.0% | |
!! | TTGTCTTATCTTTGGGGTTC+CGG | + | tig0021343:115957-115976 | Msa1390460:intron | 40.0% |
TACCGTCGCTATGTAATCAT+CGG | + | tig0021343:116179-116198 | Msa1390460:CDS | 40.0% | |
! | CCAAACTATGGAGAAGCATA+AGG | - | tig0021343:116258-116277 | None:intergenic | 40.0% |
CCTTATGCTTCTCCATAGTT+TGG | + | tig0021343:116255-116274 | Msa1390460:CDS | 40.0% | |
GGAAATTCAAACAGCAATGG+TGG | + | tig0021343:116276-116295 | Msa1390460:CDS | 40.0% | |
TTGAGGAAGATGGACATTGA+AGG | - | tig0021343:116431-116450 | None:intergenic | 40.0% | |
!!! | GTTGGAAAGAGAGTGTTTTG+AGG | - | tig0021343:116472-116491 | None:intergenic | 40.0% |
! | CTTTCCAACGCTTTGCTATA+TGG | + | tig0021343:116483-116502 | Msa1390460:CDS | 40.0% |
ATGACCATATAGCAAAGCGT+TGG | - | tig0021343:116490-116509 | None:intergenic | 40.0% | |
ACCCAAATTCTCAATCTCCT+CGG | - | tig0021343:116564-116583 | None:intergenic | 40.0% | |
! | TTTGGGTGGTGTTAATCAAG+TGG | + | tig0021343:116577-116596 | Msa1390460:CDS | 40.0% |
CTTCAGCTAACTAACGCATT+TGG | - | tig0021343:116646-116665 | None:intergenic | 40.0% | |
! | ATTCTTTTCCTAAGCCTGTG+TGG | - | tig0021343:112807-112826 | None:intergenic | 40.0% |
GGAAAAGAATGCTAGCAACA+TGG | + | tig0021343:112817-112836 | Msa1390460:CDS | 40.0% | |
ACTTGGTTGAATTCTTGGTC+TGG | - | tig0021343:112846-112865 | None:intergenic | 40.0% | |
ACCAAGAATTCAACCAAGTG+AGG | + | tig0021343:112847-112866 | Msa1390460:CDS | 40.0% | |
TGGTATGATCTTGTAGCTCT+TGG | + | tig0021343:112906-112925 | Msa1390460:CDS | 40.0% | |
! | GTTGGTGTGTTTGTTACTAC+TGG | + | tig0021343:112948-112967 | Msa1390460:CDS | 40.0% |
TGGTGGGGCAAATATACTAA+TGG | + | tig0021343:113358-113377 | Msa1390460:CDS | 40.0% | |
TAATCCCAATGTATGGAGAG+TGG | + | tig0021343:113451-113470 | Msa1390460:CDS | 40.0% | |
ACTTCCACTCTCCATACATT+GGG | - | tig0021343:113458-113477 | None:intergenic | 40.0% | |
AACTTCCACTCTCCATACAT+TGG | - | tig0021343:113459-113478 | None:intergenic | 40.0% | |
TATGACACAAGCAAAGAGTG+AGG | - | tig0021343:113541-113560 | None:intergenic | 40.0% | |
TCACTCTTTGCTTGTGTCAT+AGG | + | tig0021343:113540-113559 | Msa1390460:CDS | 40.0% | |
!!! | GGATTTTGAAGTCTCTGCAA+CGG | - | tig0021343:113729-113748 | None:intergenic | 40.0% |
TGTGACAGCTAACACAAACT+TGG | + | tig0021343:113849-113868 | Msa1390460:intron | 40.0% | |
CATGGAACACTGTCATAATG+AGG | - | tig0021343:114027-114046 | None:intergenic | 40.0% | |
! | GTTGTGGCTGGTTATTACAA+TGG | + | tig0021343:114067-114086 | Msa1390460:CDS | 40.0% |
! | ATAGCTCCTTATGGTGTTAG+AGG | + | tig0021343:114121-114140 | Msa1390460:CDS | 40.0% |
AGAACACCTCTAACACCATA+AGG | - | tig0021343:114130-114149 | None:intergenic | 40.0% | |
CTATGATTCAGCTTCAACCA+TGG | + | tig0021343:114186-114205 | Msa1390460:CDS | 40.0% | |
CCAATAGGTAGGCTCTTATA+AGG | - | tig0021343:114229-114248 | None:intergenic | 40.0% | |
CCTTATAAGAGCCTACCTAT+TGG | + | tig0021343:114226-114245 | Msa1390460:CDS | 40.0% | |
AGCCTACCTATTGGAATAGT+GGG | + | tig0021343:114235-114254 | Msa1390460:CDS | 40.0% | |
AACCCACTATTCCAATAGGT+AGG | - | tig0021343:114240-114259 | None:intergenic | 40.0% | |
ACTGAACCCACTATTCCAAT+AGG | - | tig0021343:114244-114263 | None:intergenic | 40.0% | |
! | GGTCAAGAGTTACCAAGTTT+TGG | - | tig0021343:115083-115102 | None:intergenic | 40.0% |
CTCTTCTGCAAAAGCTATTC+TGG | - | tig0021343:115333-115352 | None:intergenic | 40.0% | |
! | ATTCTAGTTACGAGCCTGTT+TGG | - | tig0021343:115449-115468 | None:intergenic | 40.0% |
CCCAACTCCAACCAATATTA+AGG | - | tig0021343:115690-115709 | None:intergenic | 40.0% | |
AGGTGCAAGTTTAGGTATAG+TGG | + | tig0021343:115729-115748 | Msa1390460:CDS | 40.0% | |
ATACCTTTGTGTCATGGGAA+GGG | + | tig0021343:115786-115805 | Msa1390460:CDS | 40.0% | |
TGTACTTTGGCTAACCAAGA+TGG | - | tig0021343:115823-115842 | None:intergenic | 40.0% | |
!! | TTGTCTTATCTTTGGGGTTC+CGG | + | tig0021343:115957-115976 | Msa1390460:intron | 40.0% |
TACCGTCGCTATGTAATCAT+CGG | + | tig0021343:116179-116198 | Msa1390460:CDS | 40.0% | |
! | CCAAACTATGGAGAAGCATA+AGG | - | tig0021343:116258-116277 | None:intergenic | 40.0% |
CCTTATGCTTCTCCATAGTT+TGG | + | tig0021343:116255-116274 | Msa1390460:CDS | 40.0% | |
GGAAATTCAAACAGCAATGG+TGG | + | tig0021343:116276-116295 | Msa1390460:CDS | 40.0% | |
TTGAGGAAGATGGACATTGA+AGG | - | tig0021343:116431-116450 | None:intergenic | 40.0% | |
!!! | GTTGGAAAGAGAGTGTTTTG+AGG | - | tig0021343:116472-116491 | None:intergenic | 40.0% |
! | CTTTCCAACGCTTTGCTATA+TGG | + | tig0021343:116483-116502 | Msa1390460:CDS | 40.0% |
ATGACCATATAGCAAAGCGT+TGG | - | tig0021343:116490-116509 | None:intergenic | 40.0% | |
ACCCAAATTCTCAATCTCCT+CGG | - | tig0021343:116564-116583 | None:intergenic | 40.0% | |
! | TTTGGGTGGTGTTAATCAAG+TGG | + | tig0021343:116577-116596 | Msa1390460:CDS | 40.0% |
CTTCAGCTAACTAACGCATT+TGG | - | tig0021343:116646-116665 | None:intergenic | 40.0% | |
GTGGAGTTTGTGAGAGTGAA+TGG | - | tig0021343:112788-112807 | None:intergenic | 45.0% | |
GCCTCACTTGGTTGAATTCT+TGG | - | tig0021343:112851-112870 | None:intergenic | 45.0% | |
AATTCAACCAAGTGAGGCAG+AGG | + | tig0021343:112853-112872 | Msa1390460:CDS | 45.0% | |
GATCTTGTAGCTCTTGGAGT+TGG | + | tig0021343:112912-112931 | Msa1390460:CDS | 45.0% | |
CCAGATTGATGAAGAGCAAC+AGG | - | tig0021343:112975-112994 | None:intergenic | 45.0% | |
CCTGTTGCTCTTCATCAATC+TGG | + | tig0021343:112972-112991 | Msa1390460:CDS | 45.0% | |
AAAGACGTGTCCAACACGTT+TGG | + | tig0021343:113182-113201 | Msa1390460:intron | 45.0% | |
AAGACGTGTCCAACACGTTT+GGG | + | tig0021343:113183-113202 | Msa1390460:intron | 45.0% | |
TCTCAAATGCTGCTGTAGCT+AGG | + | tig0021343:113390-113409 | Msa1390460:CDS | 45.0% | |
GTATGGAGAGTGGAAGTTCA+TGG | + | tig0021343:113461-113480 | Msa1390460:CDS | 45.0% | |
! | GGAAGTTCATGGATTGCCAA+AGG | + | tig0021343:113472-113491 | Msa1390460:CDS | 45.0% |
AGAAGAATGAGAGCTACTGC+TGG | - | tig0021343:113518-113537 | None:intergenic | 45.0% | |
GGTCTGCAACCGCAATATAA+AGG | - | tig0021343:113750-113769 | None:intergenic | 45.0% | |
! | GGGAACCTTATTTCATTGGG+TGG | + | tig0021343:113802-113821 | Msa1390460:intron | 45.0% |
TTTGGATTCATCGTTGTGGC+TGG | + | tig0021343:114055-114074 | Msa1390460:CDS | 45.0% | |
! | CCATAAGGAGCTATCCCTTT+TGG | - | tig0021343:114115-114134 | None:intergenic | 45.0% |
CCAAAAGGGATAGCTCCTTA+TGG | + | tig0021343:114112-114131 | Msa1390460:CDS | 45.0% | |
!! | GGTGTTAGAGGTGTTCTTGA+TGG | + | tig0021343:114133-114152 | Msa1390460:CDS | 45.0% |
GAGCCTACCTATTGGAATAG+TGG | + | tig0021343:114234-114253 | Msa1390460:CDS | 45.0% | |
TGCACAAAGACAGAGCCATT+AGG | - | tig0021343:114291-114310 | None:intergenic | 45.0% | |
! | GTGTGTGTTTGGTTCAGCTT+TGG | + | tig0021343:114612-114631 | Msa1390460:intron | 45.0% |
AGTTGGGCAAGCAACATTGT+TGG | + | tig0021343:115703-115722 | Msa1390460:CDS | 45.0% | |
AGCCAGATACCTTTGTGTCA+TGG | + | tig0021343:115780-115799 | Msa1390460:CDS | 45.0% | |
GCCAGATACCTTTGTGTCAT+GGG | + | tig0021343:115781-115800 | Msa1390460:CDS | 45.0% | |
!! | TCCCATGACACAAAGGTATC+TGG | - | tig0021343:115785-115804 | None:intergenic | 45.0% |
GATACCTTTGTGTCATGGGA+AGG | + | tig0021343:115785-115804 | Msa1390460:CDS | 45.0% | |
GCCAAAGTACATCCTTCAAC+AGG | + | tig0021343:115832-115851 | Msa1390460:CDS | 45.0% | |
GCCTGTTGAAGGATGTACTT+TGG | - | tig0021343:115836-115855 | None:intergenic | 45.0% | |
! | TTCAATGGAGTGCCTGTTGA+AGG | - | tig0021343:115847-115866 | None:intergenic | 45.0% |
!! | GATTAGCATTGGCACGCTAA+TGG | + | tig0021343:116127-116146 | Msa1390460:CDS | 45.0% |
CACGCTAATGGTGTTCTACA+TGG | + | tig0021343:116139-116158 | Msa1390460:CDS | 45.0% | |
AAGTGAGGGAGAGAAGAAAG+AGG | - | tig0021343:116235-116254 | None:intergenic | 45.0% | |
! | GGAGAAGCATAAGGAAGTGA+GGG | - | tig0021343:116249-116268 | None:intergenic | 45.0% |
! | TGGAGAAGCATAAGGAAGTG+AGG | - | tig0021343:116250-116269 | None:intergenic | 45.0% |
! | TGTTACAAGGCACCATGTGT+TGG | - | tig0021343:116349-116368 | None:intergenic | 45.0% |
AGGAAGATGGACATTGAAGG+TGG | - | tig0021343:116428-116447 | None:intergenic | 45.0% | |
AGCCGAGGAGATTGAGAATT+TGG | + | tig0021343:116559-116578 | Msa1390460:CDS | 45.0% | |
GCCGAGGAGATTGAGAATTT+GGG | + | tig0021343:116560-116579 | Msa1390460:CDS | 45.0% | |
GAGGAGATTGAGAATTTGGG+TGG | + | tig0021343:116563-116582 | Msa1390460:CDS | 45.0% | |
GTGGAGTTTGTGAGAGTGAA+TGG | - | tig0021343:112788-112807 | None:intergenic | 45.0% | |
GCCTCACTTGGTTGAATTCT+TGG | - | tig0021343:112851-112870 | None:intergenic | 45.0% | |
AATTCAACCAAGTGAGGCAG+AGG | + | tig0021343:112853-112872 | Msa1390460:CDS | 45.0% | |
GATCTTGTAGCTCTTGGAGT+TGG | + | tig0021343:112912-112931 | Msa1390460:CDS | 45.0% | |
CCAGATTGATGAAGAGCAAC+AGG | - | tig0021343:112975-112994 | None:intergenic | 45.0% | |
CCTGTTGCTCTTCATCAATC+TGG | + | tig0021343:112972-112991 | Msa1390460:CDS | 45.0% | |
AAAGACGTGTCCAACACGTT+TGG | + | tig0021343:113182-113201 | Msa1390460:intron | 45.0% | |
AAGACGTGTCCAACACGTTT+GGG | + | tig0021343:113183-113202 | Msa1390460:intron | 45.0% | |
TCTCAAATGCTGCTGTAGCT+AGG | + | tig0021343:113390-113409 | Msa1390460:CDS | 45.0% | |
GTATGGAGAGTGGAAGTTCA+TGG | + | tig0021343:113461-113480 | Msa1390460:CDS | 45.0% | |
! | GGAAGTTCATGGATTGCCAA+AGG | + | tig0021343:113472-113491 | Msa1390460:CDS | 45.0% |
AGAAGAATGAGAGCTACTGC+TGG | - | tig0021343:113518-113537 | None:intergenic | 45.0% | |
GGTCTGCAACCGCAATATAA+AGG | - | tig0021343:113750-113769 | None:intergenic | 45.0% | |
! | GGGAACCTTATTTCATTGGG+TGG | + | tig0021343:113802-113821 | Msa1390460:intron | 45.0% |
TTTGGATTCATCGTTGTGGC+TGG | + | tig0021343:114055-114074 | Msa1390460:CDS | 45.0% | |
! | CCATAAGGAGCTATCCCTTT+TGG | - | tig0021343:114115-114134 | None:intergenic | 45.0% |
CCAAAAGGGATAGCTCCTTA+TGG | + | tig0021343:114112-114131 | Msa1390460:CDS | 45.0% | |
!! | GGTGTTAGAGGTGTTCTTGA+TGG | + | tig0021343:114133-114152 | Msa1390460:CDS | 45.0% |
GAGCCTACCTATTGGAATAG+TGG | + | tig0021343:114234-114253 | Msa1390460:CDS | 45.0% | |
TGCACAAAGACAGAGCCATT+AGG | - | tig0021343:114291-114310 | None:intergenic | 45.0% | |
! | GTGTGTGTTTGGTTCAGCTT+TGG | + | tig0021343:114612-114631 | Msa1390460:intron | 45.0% |
AGTTGGGCAAGCAACATTGT+TGG | + | tig0021343:115703-115722 | Msa1390460:CDS | 45.0% | |
AGCCAGATACCTTTGTGTCA+TGG | + | tig0021343:115780-115799 | Msa1390460:CDS | 45.0% | |
GCCAGATACCTTTGTGTCAT+GGG | + | tig0021343:115781-115800 | Msa1390460:CDS | 45.0% | |
!! | TCCCATGACACAAAGGTATC+TGG | - | tig0021343:115785-115804 | None:intergenic | 45.0% |
GATACCTTTGTGTCATGGGA+AGG | + | tig0021343:115785-115804 | Msa1390460:CDS | 45.0% | |
GCCAAAGTACATCCTTCAAC+AGG | + | tig0021343:115832-115851 | Msa1390460:CDS | 45.0% | |
GCCTGTTGAAGGATGTACTT+TGG | - | tig0021343:115836-115855 | None:intergenic | 45.0% | |
! | TTCAATGGAGTGCCTGTTGA+AGG | - | tig0021343:115847-115866 | None:intergenic | 45.0% |
!! | GATTAGCATTGGCACGCTAA+TGG | + | tig0021343:116127-116146 | Msa1390460:CDS | 45.0% |
CACGCTAATGGTGTTCTACA+TGG | + | tig0021343:116139-116158 | Msa1390460:CDS | 45.0% | |
AAGTGAGGGAGAGAAGAAAG+AGG | - | tig0021343:116235-116254 | None:intergenic | 45.0% | |
! | GGAGAAGCATAAGGAAGTGA+GGG | - | tig0021343:116249-116268 | None:intergenic | 45.0% |
! | TGGAGAAGCATAAGGAAGTG+AGG | - | tig0021343:116250-116269 | None:intergenic | 45.0% |
! | TGTTACAAGGCACCATGTGT+TGG | - | tig0021343:116349-116368 | None:intergenic | 45.0% |
AGGAAGATGGACATTGAAGG+TGG | - | tig0021343:116428-116447 | None:intergenic | 45.0% | |
AGCCGAGGAGATTGAGAATT+TGG | + | tig0021343:116559-116578 | Msa1390460:CDS | 45.0% | |
GCCGAGGAGATTGAGAATTT+GGG | + | tig0021343:116560-116579 | Msa1390460:CDS | 45.0% | |
GAGGAGATTGAGAATTTGGG+TGG | + | tig0021343:116563-116582 | Msa1390460:CDS | 45.0% | |
!!! | ATATTTAAGTTAAATAATAA+TGG | + | tig0021343:115000-115019 | Msa1390460:intron | 5.0% |
!! | AATCAAAATATAAAATTTAA+TGG | + | tig0021343:115262-115281 | Msa1390460:intron | 5.0% |
!!! | ATATTTAAGTTAAATAATAA+TGG | + | tig0021343:115000-115019 | Msa1390460:intron | 5.0% |
!! | AATCAAAATATAAAATTTAA+TGG | + | tig0021343:115262-115281 | Msa1390460:intron | 5.0% |
CACTCTCACAAACTCCACAC+AGG | + | tig0021343:112790-112809 | Msa1390460:CDS | 50.0% | |
CACAAACTCCACACAGGCTT+AGG | + | tig0021343:112796-112815 | Msa1390460:CDS | 50.0% | |
GGTCTGGTGCAGACATGAAA+AGG | + | tig0021343:112874-112893 | Msa1390460:CDS | 50.0% | |
CTTGTAGCTCTTGGAGTTGG+AGG | + | tig0021343:112915-112934 | Msa1390460:CDS | 50.0% | |
CTTGGAGTTGGAGGAATGCT+TGG | + | tig0021343:112924-112943 | Msa1390460:CDS | 50.0% | |
!! | GTTGGAGGAATGCTTGGTGT+TGG | + | tig0021343:112930-112949 | Msa1390460:CDS | 50.0% |
! | GCAGTTCAAGTTCCAGTTGC+TGG | + | tig0021343:113068-113087 | Msa1390460:CDS | 50.0% |
! | GTTCAAGTTCCAGTTGCTGG+AGG | + | tig0021343:113071-113090 | Msa1390460:CDS | 50.0% |
! | GTGTCCAACACGTTTGGGTT+TGG | + | tig0021343:113188-113207 | Msa1390460:intron | 50.0% |
CTGTCCAAACCCAAACGTGT+TGG | - | tig0021343:113195-113214 | None:intergenic | 50.0% | |
TTCAGCTTCAACCATGGCTG+AGG | + | tig0021343:114192-114211 | Msa1390460:CDS | 50.0% | |
GGCTCTGTCTTTGTGCATGA+TGG | + | tig0021343:114294-114313 | Msa1390460:CDS | 50.0% | |
GCAAGCAACATTGTTGGAGC+AGG | + | tig0021343:115709-115728 | Msa1390460:CDS | 50.0% | |
GTTGGAGCAGGTGCAAGTTT+AGG | + | tig0021343:115721-115740 | Msa1390460:CDS | 50.0% | |
TTGCCCTTCCCATGACACAA+AGG | - | tig0021343:115792-115811 | None:intergenic | 50.0% | |
TTTGTGTCATGGGAAGGGCA+AGG | + | tig0021343:115791-115810 | Msa1390460:CDS | 50.0% | |
GGCCGATGATTACATAGCGA+CGG | - | tig0021343:116184-116203 | None:intergenic | 50.0% | |
GTGTGTGTAAAGGCGGTGTA+TGG | - | tig0021343:116205-116224 | None:intergenic | 50.0% | |
TGGTGGGGTCTCTTACTCTT+CGG | + | tig0021343:116293-116312 | Msa1390460:CDS | 50.0% | |
! | GGTATGTGCCATTCATGCCA+TGG | + | tig0021343:116402-116421 | Msa1390460:CDS | 50.0% |
ATGGACATTGAAGGTGGCCA+TGG | - | tig0021343:116422-116441 | None:intergenic | 50.0% | |
TCACTCTACGTATCAAGCCG+AGG | + | tig0021343:116544-116563 | Msa1390460:CDS | 50.0% | |
CACTCTCACAAACTCCACAC+AGG | + | tig0021343:112790-112809 | Msa1390460:CDS | 50.0% | |
CACAAACTCCACACAGGCTT+AGG | + | tig0021343:112796-112815 | Msa1390460:CDS | 50.0% | |
GGTCTGGTGCAGACATGAAA+AGG | + | tig0021343:112874-112893 | Msa1390460:CDS | 50.0% | |
CTTGTAGCTCTTGGAGTTGG+AGG | + | tig0021343:112915-112934 | Msa1390460:CDS | 50.0% | |
CTTGGAGTTGGAGGAATGCT+TGG | + | tig0021343:112924-112943 | Msa1390460:CDS | 50.0% | |
!! | GTTGGAGGAATGCTTGGTGT+TGG | + | tig0021343:112930-112949 | Msa1390460:CDS | 50.0% |
! | GCAGTTCAAGTTCCAGTTGC+TGG | + | tig0021343:113068-113087 | Msa1390460:CDS | 50.0% |
! | GTTCAAGTTCCAGTTGCTGG+AGG | + | tig0021343:113071-113090 | Msa1390460:CDS | 50.0% |
! | GTGTCCAACACGTTTGGGTT+TGG | + | tig0021343:113188-113207 | Msa1390460:intron | 50.0% |
CTGTCCAAACCCAAACGTGT+TGG | - | tig0021343:113195-113214 | None:intergenic | 50.0% | |
TTCAGCTTCAACCATGGCTG+AGG | + | tig0021343:114192-114211 | Msa1390460:CDS | 50.0% | |
GGCTCTGTCTTTGTGCATGA+TGG | + | tig0021343:114294-114313 | Msa1390460:CDS | 50.0% | |
GCAAGCAACATTGTTGGAGC+AGG | + | tig0021343:115709-115728 | Msa1390460:CDS | 50.0% | |
GTTGGAGCAGGTGCAAGTTT+AGG | + | tig0021343:115721-115740 | Msa1390460:CDS | 50.0% | |
TTGCCCTTCCCATGACACAA+AGG | - | tig0021343:115792-115811 | None:intergenic | 50.0% | |
TTTGTGTCATGGGAAGGGCA+AGG | + | tig0021343:115791-115810 | Msa1390460:CDS | 50.0% | |
GGCCGATGATTACATAGCGA+CGG | - | tig0021343:116184-116203 | None:intergenic | 50.0% | |
GTGTGTGTAAAGGCGGTGTA+TGG | - | tig0021343:116205-116224 | None:intergenic | 50.0% | |
TGGTGGGGTCTCTTACTCTT+CGG | + | tig0021343:116293-116312 | Msa1390460:CDS | 50.0% | |
! | GGTATGTGCCATTCATGCCA+TGG | + | tig0021343:116402-116421 | Msa1390460:CDS | 50.0% |
ATGGACATTGAAGGTGGCCA+TGG | - | tig0021343:116422-116441 | None:intergenic | 50.0% | |
TCACTCTACGTATCAAGCCG+AGG | + | tig0021343:116544-116563 | Msa1390460:CDS | 50.0% | |
AACCAAGTGAGGCAGAGGTC+TGG | + | tig0021343:112858-112877 | Msa1390460:CDS | 55.0% | |
CTGAAAGCTCCTCCAGCAAC+TGG | - | tig0021343:113083-113102 | None:intergenic | 55.0% | |
AGCTTCAACCATGGCTGAGG+AGG | + | tig0021343:114195-114214 | Msa1390460:CDS | 55.0% | |
AACCATGGCTGAGGAGGTCA+AGG | + | tig0021343:114201-114220 | Msa1390460:CDS | 55.0% | |
ATCCTTGACCTCCTCAGCCA+TGG | - | tig0021343:114206-114225 | None:intergenic | 55.0% | |
! | GGGCAAGGCTTGTTCCATCT+TGG | + | tig0021343:115806-115825 | Msa1390460:CDS | 55.0% |
TGGGGTCTCTTACTCTTCGG+TGG | + | tig0021343:116296-116315 | Msa1390460:CDS | 55.0% | |
GAAGGTGGCCATGGCATGAA+TGG | - | tig0021343:116413-116432 | None:intergenic | 55.0% | |
AACCAAGTGAGGCAGAGGTC+TGG | + | tig0021343:112858-112877 | Msa1390460:CDS | 55.0% | |
CTGAAAGCTCCTCCAGCAAC+TGG | - | tig0021343:113083-113102 | None:intergenic | 55.0% | |
AGCTTCAACCATGGCTGAGG+AGG | + | tig0021343:114195-114214 | Msa1390460:CDS | 55.0% | |
AACCATGGCTGAGGAGGTCA+AGG | + | tig0021343:114201-114220 | Msa1390460:CDS | 55.0% | |
ATCCTTGACCTCCTCAGCCA+TGG | - | tig0021343:114206-114225 | None:intergenic | 55.0% | |
! | GGGCAAGGCTTGTTCCATCT+TGG | + | tig0021343:115806-115825 | Msa1390460:CDS | 55.0% |
TGGGGTCTCTTACTCTTCGG+TGG | + | tig0021343:116296-116315 | Msa1390460:CDS | 55.0% | |
GAAGGTGGCCATGGCATGAA+TGG | - | tig0021343:116413-116432 | None:intergenic | 55.0% | |
CACCAGACCTCTGCCTCACT+TGG | - | tig0021343:112863-112882 | None:intergenic | 60.0% | |
CACCAGACCTCTGCCTCACT+TGG | - | tig0021343:112863-112882 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0021343 | gene | 112696 | 116807 | 112696 | ID=Msa1390460;Name=Msa1390460 |
tig0021343 | mRNA | 112696 | 116807 | 112696 | ID=Msa1390460-mRNA-1;Parent=Msa1390460;Name=Msa1390460-mRNA-1;_AED=0.17;_eAED=0.17;_QI=66|1|1|1|1|1|5|152|575 |
tig0021343 | exon | 112696 | 113122 | 112696 | ID=Msa1390460-mRNA-1:exon:12218;Parent=Msa1390460-mRNA-1 |
tig0021343 | exon | 113339 | 113561 | 113339 | ID=Msa1390460-mRNA-1:exon:12219;Parent=Msa1390460-mRNA-1 |
tig0021343 | exon | 114000 | 114330 | 114000 | ID=Msa1390460-mRNA-1:exon:12220;Parent=Msa1390460-mRNA-1 |
tig0021343 | exon | 115655 | 115883 | 115655 | ID=Msa1390460-mRNA-1:exon:12221;Parent=Msa1390460-mRNA-1 |
tig0021343 | exon | 116072 | 116807 | 116072 | ID=Msa1390460-mRNA-1:exon:12222;Parent=Msa1390460-mRNA-1 |
tig0021343 | five_prime_UTR | 112696 | 112761 | 112696 | ID=Msa1390460-mRNA-1:five_prime_utr;Parent=Msa1390460-mRNA-1 |
tig0021343 | CDS | 112762 | 113122 | 112762 | ID=Msa1390460-mRNA-1:cds;Parent=Msa1390460-mRNA-1 |
tig0021343 | CDS | 113339 | 113561 | 113339 | ID=Msa1390460-mRNA-1:cds;Parent=Msa1390460-mRNA-1 |
tig0021343 | CDS | 114000 | 114330 | 114000 | ID=Msa1390460-mRNA-1:cds;Parent=Msa1390460-mRNA-1 |
tig0021343 | CDS | 115655 | 115883 | 115655 | ID=Msa1390460-mRNA-1:cds;Parent=Msa1390460-mRNA-1 |
tig0021343 | CDS | 116072 | 116655 | 116072 | ID=Msa1390460-mRNA-1:cds;Parent=Msa1390460-mRNA-1 |
tig0021343 | three_prime_UTR | 116656 | 116807 | 116656 | ID=Msa1390460-mRNA-1:three_prime_utr;Parent=Msa1390460-mRNA-1 |
Gene Sequence |
Protein sequence |