Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1206390 | sp|Q9LZ20|CAAT6_ARATH | 52.313 | 562 | 250 | 6 | 2 | 552 | 16 | 570 | 0.0 | 574 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1206390 | A0A396IC75 | 98.087 | 575 | 11 | 0 | 1 | 575 | 1 | 575 | 0.0 | 1157 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045620 | Msa1206390 | 0.815288 | 9.983180e-52 | -8.615850e-47 |
| Msa0623310 | Msa1206390 | 0.812878 | 3.397059e-51 | -8.615850e-47 |
| Msa0136090 | Msa1206390 | 0.821965 | 3.049058e-53 | -8.615850e-47 |
| Msa0192830 | Msa1206390 | 0.801713 | 7.908123e-49 | -8.615850e-47 |
| Msa0206370 | Msa1206390 | 0.813339 | 2.691607e-51 | -8.615850e-47 |
| Msa0223040 | Msa1206390 | 0.818686 | 1.721894e-52 | -8.615850e-47 |
| Msa0481670 | Msa1206390 | 0.804770 | 1.842079e-49 | -8.615850e-47 |
| Msa1042300 | Msa1206390 | 0.829111 | 6.179013e-55 | -8.615850e-47 |
| Msa0260980 | Msa1206390 | 0.809250 | 2.076186e-50 | -8.615850e-47 |
| Msa0264230 | Msa1206390 | 0.843128 | 1.694795e-58 | -8.615850e-47 |
| Msa0302200 | Msa1206390 | 0.831419 | 1.687593e-55 | -8.615850e-47 |
| Msa0336430 | Msa1206390 | 0.819579 | 1.078646e-52 | -8.615850e-47 |
| Msa0336460 | Msa1206390 | 0.816286 | 5.981949e-52 | -8.615850e-47 |
| Msa0336520 | Msa1206390 | 0.813944 | 1.980443e-51 | -8.615850e-47 |
| Msa0339530 | Msa1206390 | 0.832608 | 8.577291e-56 | -8.615850e-47 |
| Msa1206340 | Msa1206390 | 0.996335 | 3.122078e-226 | -8.615850e-47 |
| Msa1206390 | Msa1223540 | 0.803813 | 2.913796e-49 | -8.615850e-47 |
| Msa1206390 | Msa1255710 | 0.821706 | 3.500901e-53 | -8.615850e-47 |
| Msa1206390 | Msa1256720 | 0.973133 | 6.466512e-136 | -8.615850e-47 |
| Msa1206390 | Msa1273320 | 0.807914 | 4.004240e-50 | -8.615850e-47 |
| Msa1206390 | Msa1371800 | 0.820650 | 6.131572e-53 | -8.615850e-47 |
| Msa1206390 | Msa1376310 | 0.819555 | 1.092126e-52 | -8.615850e-47 |
| Msa1206390 | Msa1390460 | 0.977288 | 1.758401e-143 | -8.615850e-47 |
| Msa0876630 | Msa1206390 | 0.812834 | 3.472801e-51 | -8.615850e-47 |
| Msa0978980 | Msa1206390 | 0.827492 | 1.518502e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1206390 | MtrunA17_Chr4g0055481 | 98.087 | 575 | 11 | 0 | 1 | 575 | 1 | 575 | 0.0 | 1157 |
| Msa1206390 | MtrunA17_Chr1g0210461 | 49.485 | 582 | 271 | 6 | 2 | 573 | 9 | 577 | 0.0 | 569 |
| Msa1206390 | MtrunA17_Chr1g0160231 | 42.294 | 558 | 302 | 6 | 3 | 551 | 27 | 573 | 1.08e-146 | 436 |
| Msa1206390 | MtrunA17_Chr2g0296921 | 40.901 | 555 | 315 | 5 | 5 | 555 | 34 | 579 | 1.88e-145 | 432 |
| Msa1206390 | MtrunA17_Chr8g0381021 | 41.016 | 551 | 310 | 6 | 5 | 550 | 34 | 574 | 2.50e-140 | 419 |
| Msa1206390 | MtrunA17_Chr8g0381051 | 39.206 | 579 | 325 | 8 | 3 | 571 | 37 | 598 | 1.15e-138 | 415 |
| Msa1206390 | MtrunA17_Chr8g0381031 | 41.304 | 552 | 308 | 6 | 5 | 550 | 35 | 576 | 7.94e-134 | 403 |
| Msa1206390 | MtrunA17_Chr8g0358951 | 36.496 | 548 | 335 | 4 | 3 | 547 | 39 | 576 | 1.84e-114 | 352 |
| Msa1206390 | MtrunA17_Chr7g0254011 | 37.745 | 408 | 251 | 1 | 30 | 434 | 25 | 432 | 2.77e-73 | 246 |
| Msa1206390 | MtrunA17_Chr7g0254061 | 35.222 | 406 | 260 | 1 | 26 | 428 | 15 | 420 | 3.31e-72 | 243 |
| Msa1206390 | MtrunA17_Chr6g0460911 | 33.661 | 407 | 258 | 4 | 33 | 434 | 36 | 435 | 3.70e-68 | 232 |
| Msa1206390 | MtrunA17_Chr6g0460881 | 33.415 | 407 | 259 | 4 | 33 | 434 | 33 | 432 | 1.31e-66 | 228 |
| Msa1206390 | MtrunA17_Chr6g0460901 | 34.091 | 396 | 252 | 4 | 33 | 422 | 34 | 426 | 1.52e-66 | 228 |
| Msa1206390 | MtrunA17_Chr7g0215781 | 31.550 | 542 | 339 | 16 | 20 | 547 | 31 | 554 | 2.25e-64 | 220 |
| Msa1206390 | MtrunA17_Chr6g0460891 | 31.618 | 408 | 265 | 5 | 30 | 431 | 23 | 422 | 2.74e-63 | 220 |
| Msa1206390 | MtrunA17_Chr6g0463361 | 33.065 | 248 | 149 | 4 | 322 | 558 | 2 | 243 | 8.86e-33 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1206390 | AT5G04770.1 | 52.313 | 562 | 250 | 6 | 2 | 552 | 16 | 570 | 0.0 | 574 |
| Msa1206390 | AT3G10600.1 | 50.521 | 576 | 259 | 6 | 2 | 558 | 15 | 583 | 0.0 | 553 |
| Msa1206390 | AT4G21120.1 | 41.971 | 548 | 306 | 4 | 3 | 547 | 30 | 568 | 2.17e-159 | 468 |
| Msa1206390 | AT5G04770.2 | 54.156 | 397 | 174 | 3 | 2 | 391 | 16 | 411 | 1.31e-147 | 432 |
| Msa1206390 | AT3G10600.2 | 49.324 | 444 | 199 | 6 | 134 | 558 | 1 | 437 | 2.56e-144 | 424 |
| Msa1206390 | AT5G04770.3 | 51.163 | 430 | 192 | 6 | 134 | 552 | 1 | 423 | 4.00e-141 | 416 |
| Msa1206390 | AT2G34960.1 | 38.256 | 562 | 326 | 7 | 3 | 560 | 24 | 568 | 1.05e-132 | 399 |
| Msa1206390 | AT1G17120.1 | 40.109 | 551 | 305 | 6 | 3 | 544 | 41 | 575 | 3.36e-123 | 375 |
| Msa1206390 | AT4G21120.2 | 40.749 | 427 | 241 | 4 | 124 | 547 | 1 | 418 | 1.97e-110 | 337 |
| Msa1206390 | AT3G03720.1 | 36.224 | 392 | 245 | 3 | 35 | 422 | 16 | 406 | 9.27e-75 | 249 |
| Msa1206390 | AT5G36940.1 | 34.286 | 420 | 269 | 2 | 18 | 434 | 8 | 423 | 9.37e-71 | 239 |
| Msa1206390 | AT1G58030.1 | 34.430 | 395 | 256 | 1 | 37 | 428 | 34 | 428 | 5.95e-70 | 237 |
| Msa1206390 | AT1G05940.1 | 31.204 | 548 | 338 | 10 | 18 | 546 | 26 | 553 | 1.55e-65 | 224 |
| Msa1206390 | AT1G05940.4 | 34.878 | 410 | 252 | 6 | 18 | 420 | 26 | 427 | 1.22e-61 | 212 |
| Msa1206390 | AT1G05940.3 | 34.878 | 410 | 252 | 6 | 18 | 420 | 26 | 427 | 1.81e-61 | 212 |
| Msa1206390 | AT1G05940.2 | 28.475 | 446 | 285 | 7 | 119 | 546 | 6 | 435 | 2.26e-40 | 152 |
Find 146 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTCACTTGGTTGAATTCT+TGG | 0.073222 | 8_1:+63391493 | None:intergenic |
| AGCCGAGGAGATTGAGAATT+TGG | 0.146226 | 8_1:-63387745 | Msa1206390:CDS |
| CTATATATCTTGTACGGTTT+TGG | 0.184776 | 8_1:-63387545 | Msa1206390:three_prime_UTR |
| GGAGAATTCTTGGGATATTT+TGG | 0.185427 | 8_1:-63391003 | Msa1206390:CDS |
| TCACTCTTTGCTTGTGTCAT+AGG | 0.192722 | 8_1:-63390801 | Msa1206390:intron |
| AAGTTGGTTACACTCAAATT+TGG | 0.199523 | 8_1:+63387702 | None:intergenic |
| TATATGAGCACTTAGTTTCT+TGG | 0.214314 | 8_1:+63391646 | None:intergenic |
| CTGTTTGAATTTCCAAACTA+TGG | 0.229022 | 8_1:+63388037 | None:intergenic |
| TCAATGGCTTTCCTTAATAT+TGG | 0.256994 | 8_1:-63388628 | Msa1206390:CDS |
| CCCAACTCCAACCAATATTA+AGG | 0.269543 | 8_1:+63388617 | None:intergenic |
| CCTTATGCTTCTCCATAGTT+TGG | 0.287271 | 8_1:-63388049 | Msa1206390:CDS |
| CCATAAGGAGCTATCCCTTT+TGG | 0.287938 | 8_1:+63390201 | None:intergenic |
| AACTTTACTTTATTGCCTAA+TGG | 0.315376 | 8_1:-63390040 | Msa1206390:CDS |
| TCCTTAATATTGGTTGGAGT+TGG | 0.318656 | 8_1:-63388618 | Msa1206390:CDS |
| TCTCTTCTAGTTGCAATGTT+AGG | 0.325505 | 8_1:-63388550 | Msa1206390:CDS |
| ACATGAAAAGGAAACTTAAT+TGG | 0.331326 | 8_1:-63391455 | Msa1206390:CDS |
| TCCCATGACACAAAGGTATC+TGG | 0.331917 | 8_1:+63388522 | None:intergenic |
| CTTTCCAACGCTTTGCTATA+TGG | 0.333799 | 8_1:-63387821 | Msa1206390:CDS |
| TTATGATGCAGGAGAATTCT+TGG | 0.344760 | 8_1:-63391013 | Msa1206390:intron |
| ATAGTGTACTTTAGTTATAT+AGG | 0.350941 | 8_1:-63390150 | Msa1206390:CDS |
| GCAGTTCAAGTTCCAGTTGC+TGG | 0.352519 | 8_1:-63391273 | Msa1206390:CDS |
| GTTGGAGCAGGTGCAAGTTT+AGG | 0.353177 | 8_1:-63388583 | Msa1206390:CDS |
| CCAATAGGTAGGCTCTTATA+AGG | 0.355464 | 8_1:+63390087 | None:intergenic |
| CATGATGGTTCCTTACAATA+AGG | 0.362306 | 8_1:-63390004 | Msa1206390:intron |
| TGTCATAATGAGGTTCAATA+TGG | 0.363868 | 8_1:+63390299 | None:intergenic |
| TCCAACATGTTATAATCCTT+TGG | 0.364236 | 8_1:+63390853 | None:intergenic |
| CTTCAGCTAACTAACGCATT+TGG | 0.368274 | 8_1:+63387661 | None:intergenic |
| CCTGTTGCTCTTCATCAATC+TGG | 0.370196 | 8_1:-63391369 | Msa1206390:CDS |
| ACTTGGTTGAATTCTTGGTC+TGG | 0.370346 | 8_1:+63391498 | None:intergenic |
| AGTTGGTTACACTCAAATTT+GGG | 0.376212 | 8_1:+63387703 | None:intergenic |
| GGTGTTAGAGGTGTTCTTGA+TGG | 0.391791 | 8_1:-63390180 | Msa1206390:CDS |
| GTTGGTGTGTTTGTTACTAC+TGG | 0.394063 | 8_1:-63391393 | Msa1206390:CDS |
| GGCTCTGTCTTTGTGCATGA+TGG | 0.401655 | 8_1:-63390019 | Msa1206390:CDS |
| CTGAAAGCTCCTCCAGCAAC+TGG | 0.405724 | 8_1:+63391261 | None:intergenic |
| TTTATTTCCTATATCATAGC+TGG | 0.406170 | 8_1:-63391336 | Msa1206390:CDS |
| CCTTATAAGAGCCTACCTAT+TGG | 0.406403 | 8_1:-63390087 | Msa1206390:CDS |
| CCAAAAGGGATAGCTCCTTA+TGG | 0.407325 | 8_1:-63390201 | Msa1206390:CDS |
| CCTTAATATTGGTTGGAGTT+GGG | 0.411834 | 8_1:-63388617 | Msa1206390:CDS |
| ATAGCTCCTTATGGTGTTAG+AGG | 0.412926 | 8_1:-63390192 | Msa1206390:CDS |
| TGGTATGATCTTGTAGCTCT+TGG | 0.419437 | 8_1:-63391435 | Msa1206390:CDS |
| CCAGATTGATGAAGAGCAAC+AGG | 0.428383 | 8_1:+63391369 | None:intergenic |
| GCCGAGGAGATTGAGAATTT+GGG | 0.430127 | 8_1:-63387744 | Msa1206390:CDS |
| GATTAGCATTGGCACGCTAA+TGG | 0.433590 | 8_1:-63388177 | Msa1206390:CDS |
| TGGTGGGGCAAATATACTAA+TGG | 0.434674 | 8_1:-63390983 | Msa1206390:CDS |
| GGGCAAGGCTTGTTCCATCT+TGG | 0.436918 | 8_1:-63388498 | Msa1206390:CDS |
| TTTGGATTCATCGTTGTGGC+TGG | 0.438413 | 8_1:-63390258 | Msa1206390:CDS |
| TGACAATGTTGTCATGTTGT+TGG | 0.446760 | 8_1:+63391587 | None:intergenic |
| GAGAAAATAATCCCAATGTA+TGG | 0.450687 | 8_1:-63390897 | Msa1206390:CDS |
| AGGTGCAAGTTTAGGTATAG+TGG | 0.451944 | 8_1:-63388575 | Msa1206390:CDS |
| GAGCCTACCTATTGGAATAG+TGG | 0.452705 | 8_1:-63390079 | Msa1206390:CDS |
| ACTGAACCCACTATTCCAAT+AGG | 0.453533 | 8_1:+63390072 | None:intergenic |
| GCCAGATACCTTTGTGTCAT+GGG | 0.453690 | 8_1:-63388523 | Msa1206390:CDS |
| TGTTGTTGGTTGTTGTAATG+TGG | 0.458265 | 8_1:+63391601 | None:intergenic |
| TATGATGCAGGAGAATTCTT+GGG | 0.458515 | 8_1:-63391012 | Msa1206390:intron |
| GATCTTGTAGCTCTTGGAGT+TGG | 0.460545 | 8_1:-63391429 | Msa1206390:CDS |
| AGTTATTTAAGATTAACATT+TGG | 0.461337 | 8_1:-63391240 | Msa1206390:intron |
| AGTTGGGCAAGCAACATTGT+TGG | 0.465245 | 8_1:-63388601 | Msa1206390:CDS |
| ATAATTGAGTTGATTAGCAT+TGG | 0.467575 | 8_1:-63388188 | Msa1206390:CDS |
| TGGCTTTCCTTAATATTGGT+TGG | 0.469455 | 8_1:-63388624 | Msa1206390:CDS |
| CTTGGAGTTGGAGGAATGCT+TGG | 0.469596 | 8_1:-63391417 | Msa1206390:CDS |
| TGGTGGGGTCTCTTACTCTT+CGG | 0.470816 | 8_1:-63388011 | Msa1206390:CDS |
| CTTGTAGCTCTTGGAGTTGG+AGG | 0.471002 | 8_1:-63391426 | Msa1206390:CDS |
| GCCAAAGTACATCCTTCAAC+AGG | 0.471515 | 8_1:-63388472 | Msa1206390:CDS |
| GTATGGAGAGTGGAAGTTCA+TGG | 0.471951 | 8_1:-63390880 | Msa1206390:CDS |
| TGTAACCAACTTACAAACTA+AGG | 0.473407 | 8_1:-63387691 | Msa1206390:CDS |
| TGTACAAGGTTGTTGTTACA+AGG | 0.475149 | 8_1:+63387945 | None:intergenic |
| CCAAACTATGGAGAAGCATA+AGG | 0.477093 | 8_1:+63388049 | None:intergenic |
| TTCCACCTTAGTTTGTAAGT+TGG | 0.479933 | 8_1:+63387686 | None:intergenic |
| ATATGACTGACCTTATTGTA+AGG | 0.480341 | 8_1:+63389994 | None:intergenic |
| GGTCTGGTGCAGACATGAAA+AGG | 0.485575 | 8_1:-63391467 | Msa1206390:CDS |
| CACAAACTCCACACAGGCTT+AGG | 0.485903 | 8_1:-63391545 | Msa1206390:CDS |
| ACTTCCACTCTCCATACATT+GGG | 0.486802 | 8_1:+63390886 | None:intergenic |
| AAAATGTACATATATATTGT+GGG | 0.494757 | 8_1:-63387612 | Msa1206390:three_prime_UTR |
| CACGCTAATGGTGTTCTACA+TGG | 0.494994 | 8_1:-63388165 | Msa1206390:CDS |
| AACCAAGTGAGGCAGAGGTC+TGG | 0.496317 | 8_1:-63391483 | Msa1206390:CDS |
| TCTCAAATGCTGCTGTAGCT+AGG | 0.500116 | 8_1:-63390951 | Msa1206390:CDS |
| AGCCTACCTATTGGAATAGT+GGG | 0.500222 | 8_1:-63390078 | Msa1206390:CDS |
| GCCTGTTGAAGGATGTACTT+TGG | 0.501517 | 8_1:+63388471 | None:intergenic |
| GTTGGAGGAATGCTTGGTGT+TGG | 0.502228 | 8_1:-63391411 | Msa1206390:CDS |
| GGAAATTCAAACAGCAATGG+TGG | 0.509718 | 8_1:-63388028 | Msa1206390:CDS |
| GTGGAGTTTGTGAGAGTGAA+TGG | 0.509937 | 8_1:+63391556 | None:intergenic |
| AGAACACCTCTAACACCATA+AGG | 0.511059 | 8_1:+63390186 | None:intergenic |
| TGATATTCCAGCTATGATAT+AGG | 0.513325 | 8_1:+63391329 | None:intergenic |
| GAAGGTGGCCATGGCATGAA+TGG | 0.513555 | 8_1:+63387894 | None:intergenic |
| GCAAGCAACATTGTTGGAGC+AGG | 0.513760 | 8_1:-63388595 | Msa1206390:CDS |
| AGAGAAAGCATCATATTCAA+TGG | 0.515624 | 8_1:-63388644 | Msa1206390:CDS |
| AAGTGAGGGAGAGAAGAAAG+AGG | 0.516262 | 8_1:+63388072 | None:intergenic |
| AACTTCCACTCTCCATACAT+TGG | 0.516853 | 8_1:+63390885 | None:intergenic |
| AAAACTTGGTTAATCCAAAA+GGG | 0.521490 | 8_1:-63390215 | Msa1206390:CDS |
| GCCAAAGGATTATAACATGT+TGG | 0.521646 | 8_1:-63390854 | Msa1206390:CDS |
| ATTATGCTATATATCTTGTA+CGG | 0.522120 | 8_1:-63387551 | Msa1206390:three_prime_UTR |
| AACCATGGCTGAGGAGGTCA+AGG | 0.523071 | 8_1:-63390112 | Msa1206390:CDS |
| GAAATTCAAACAGCAATGGT+GGG | 0.526735 | 8_1:-63388027 | Msa1206390:CDS |
| AGAAGAATGAGAGCTACTGC+TGG | 0.527933 | 8_1:+63390826 | None:intergenic |
| ATGGACATTGAAGGTGGCCA+TGG | 0.537476 | 8_1:+63387885 | None:intergenic |
| AGCCAGATACCTTTGTGTCA+TGG | 0.541144 | 8_1:-63388524 | Msa1206390:CDS |
| GAGCATATTCTTGTTGTACA+AGG | 0.543125 | 8_1:+63387931 | None:intergenic |
| AGCTTCAACCATGGCTGAGG+AGG | 0.545111 | 8_1:-63390118 | Msa1206390:CDS |
| TGCACAAAGACAGAGCCATT+AGG | 0.546466 | 8_1:+63390025 | None:intergenic |
| GTGTGTGTAAAGGCGGTGTA+TGG | 0.548779 | 8_1:+63388102 | None:intergenic |
| AACAAGAATATGCTCAATGT+TGG | 0.550044 | 8_1:-63387923 | Msa1206390:CDS |
| ATCCTTGACCTCCTCAGCCA+TGG | 0.551869 | 8_1:+63390110 | None:intergenic |
| GATGATTGATTTCAGTACAA+AGG | 0.552981 | 8_1:-63390328 | Msa1206390:intron |
| TTCAGCTTCAACCATGGCTG+AGG | 0.555396 | 8_1:-63390121 | Msa1206390:CDS |
| TTCAATGGAGTGCCTGTTGA+AGG | 0.556143 | 8_1:+63388460 | None:intergenic |
| GGAGAAGCATAAGGAAGTGA+GGG | 0.556959 | 8_1:+63388058 | None:intergenic |
| GATACCTTTGTGTCATGGGA+AGG | 0.563239 | 8_1:-63388519 | Msa1206390:CDS |
| TTGAGGAAGATGGACATTGA+AGG | 0.567242 | 8_1:+63387876 | None:intergenic |
| ACCCAAATTCTCAATCTCCT+CGG | 0.568939 | 8_1:+63387743 | None:intergenic |
| TGGAGAAGCATAAGGAAGTG+AGG | 0.569100 | 8_1:+63388057 | None:intergenic |
| AATTCAACCAAGTGAGGCAG+AGG | 0.569150 | 8_1:-63391488 | Msa1206390:CDS |
| TTTGGAAATTCAAACAGCAA+TGG | 0.571143 | 8_1:-63388031 | Msa1206390:CDS |
| TGTACTTTGGCTAACCAAGA+TGG | 0.571883 | 8_1:+63388484 | None:intergenic |
| TACCGTCGCTATGTAATCAT+CGG | 0.577579 | 8_1:-63388125 | Msa1206390:CDS |
| ATGACCATATAGCAAAGCGT+TGG | 0.577715 | 8_1:+63387817 | None:intergenic |
| CTATGATTCAGCTTCAACCA+TGG | 0.580237 | 8_1:-63390127 | Msa1206390:CDS |
| ATACCTTTGTGTCATGGGAA+GGG | 0.590763 | 8_1:-63388518 | Msa1206390:CDS |
| TAATCCCAATGTATGGAGAG+TGG | 0.592516 | 8_1:-63390890 | Msa1206390:CDS |
| CATGGAACACTGTCATAATG+AGG | 0.594067 | 8_1:+63390289 | None:intergenic |
| GTTGTGGCTGGTTATTACAA+TGG | 0.594223 | 8_1:-63390246 | Msa1206390:CDS |
| GTTCAAGTTCCAGTTGCTGG+AGG | 0.596218 | 8_1:-63391270 | Msa1206390:CDS |
| GGAAAAGAATGCTAGCAACA+TGG | 0.601745 | 8_1:-63391524 | Msa1206390:CDS |
| TGTTACAAGGCACCATGTGT+TGG | 0.603576 | 8_1:+63387958 | None:intergenic |
| AGGAACAAAAGTGTGTGTAA+AGG | 0.603696 | 8_1:+63388092 | None:intergenic |
| GGAAGTTCATGGATTGCCAA+AGG | 0.604127 | 8_1:-63390869 | Msa1206390:CDS |
| TTTGGGTGGTGTTAATCAAG+TGG | 0.606482 | 8_1:-63387727 | Msa1206390:CDS |
| GGTATGTGCCATTCATGCCA+TGG | 0.610730 | 8_1:-63387902 | Msa1206390:CDS |
| TTTCTTTGGATTCATCGTTG+TGG | 0.629846 | 8_1:-63390262 | Msa1206390:CDS |
| TGGGGTCTCTTACTCTTCGG+TGG | 0.630179 | 8_1:-63388008 | Msa1206390:CDS |
| AACAAAAGTGTGTGTAAAGG+CGG | 0.630640 | 8_1:+63388095 | None:intergenic |
| ACCAAGAATTCAACCAAGTG+AGG | 0.631416 | 8_1:-63391494 | Msa1206390:CDS |
| ATATAGGAAATAAAGACTGA+AGG | 0.634540 | 8_1:+63391345 | None:intergenic |
| AAATTCAAACAGCAATGGTG+GGG | 0.636518 | 8_1:-63388026 | Msa1206390:CDS |
| AAATGTACATATATATTGTG+GGG | 0.640711 | 8_1:-63387611 | Msa1206390:three_prime_UTR |
| AACCAACTTACAAACTAAGG+TGG | 0.646197 | 8_1:-63387688 | Msa1206390:CDS |
| CACTCTCACAAACTCCACAC+AGG | 0.646429 | 8_1:-63391551 | Msa1206390:CDS |
| GAGGAGATTGAGAATTTGGG+TGG | 0.655023 | 8_1:-63387741 | Msa1206390:CDS |
| ACCATAAAGCACATAAAACA+TGG | 0.658020 | 8_1:+63387785 | None:intergenic |
| AGGAAGATGGACATTGAAGG+TGG | 0.658680 | 8_1:+63387879 | None:intergenic |
| TTTGTGTCATGGGAAGGGCA+AGG | 0.658768 | 8_1:-63388513 | Msa1206390:CDS |
| TTGCCCTTCCCATGACACAA+AGG | 0.659610 | 8_1:+63388515 | None:intergenic |
| GGCCGATGATTACATAGCGA+CGG | 0.666130 | 8_1:+63388123 | None:intergenic |
| TCACTCTACGTATCAAGCCG+AGG | 0.689681 | 8_1:-63387760 | Msa1206390:CDS |
| TGAATCCAAAGAAAATCACA+TGG | 0.692143 | 8_1:+63390271 | None:intergenic |
| TATGACACAAGCAAAGAGTG+AGG | 0.719524 | 8_1:+63390803 | None:intergenic |
| AACCCACTATTCCAATAGGT+AGG | 0.722428 | 8_1:+63390076 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTAAAACTATACTAATT+AGG | - | chr8_1:63388595-63388614 | Msa1206390:CDS | 10.0% |
| !! | ATATTCAAAATTGTAAATAA+TGG | + | chr8_1:63388734-63388753 | None:intergenic | 10.0% |
| !! | AAGAATGATAATTATTTATT+TGG | + | chr8_1:63388809-63388828 | None:intergenic | 10.0% |
| !!! | ATATTTTGTCAAAAAAAAAT+TGG | + | chr8_1:63389806-63389825 | None:intergenic | 10.0% |
| !!! | TTAAATTTTTTGATTAAATG+TGG | - | chr8_1:63389992-63390011 | Msa1206390:intron | 10.0% |
| !!! | TTATTTTCCTTTTTTTTTTT+TGG | + | chr8_1:63390091-63390110 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAGGAAAATAA+TGG | - | chr8_1:63390091-63390110 | Msa1206390:CDS | 10.0% |
| !! | AAAAAAAAAAGGAAAATAAT+GGG | - | chr8_1:63390092-63390111 | Msa1206390:CDS | 10.0% |
| !!! | TATAAAATTTAATGGATAAT+TGG | - | chr8_1:63390130-63390149 | Msa1206390:CDS | 10.0% |
| !!! | AAATTTTCAAAAATATTTGA+TGG | + | chr8_1:63390763-63390782 | None:intergenic | 10.0% |
| !!! | AGTTATTTAAGATTAACATT+TGG | - | chr8_1:63387924-63387943 | Msa1206390:CDS | 15.0% |
| !!! | ATTAGTATAGTTTTAAATTG+TGG | + | chr8_1:63388594-63388613 | None:intergenic | 15.0% |
| !!! | TACAATTTTGAATATTTAAC+TGG | - | chr8_1:63388739-63388758 | Msa1206390:intron | 15.0% |
| !! | TTTAATTCAAATACATTGTT+AGG | + | chr8_1:63389325-63389344 | None:intergenic | 15.0% |
| !! | TGAATGTATAATTACTAAAA+TGG | - | chr8_1:63389634-63389653 | Msa1206390:intron | 15.0% |
| !! | AAAAATGTACATATATATTG+TGG | - | chr8_1:63391551-63391570 | Msa1206390:CDS | 15.0% |
| !! | AAAATGTACATATATATTGT+GGG | - | chr8_1:63391552-63391571 | Msa1206390:CDS | 15.0% |
| !! | ATATCAAACTAAAAAACAGA+AGG | + | chr8_1:63388427-63388446 | None:intergenic | 20.0% |
| !!! | TTTAGTTTGATATTGTATCA+AGG | - | chr8_1:63388434-63388453 | Msa1206390:intron | 20.0% |
| !! | ACTATACTAATTAGGTTAAT+TGG | - | chr8_1:63388603-63388622 | Msa1206390:CDS | 20.0% |
| !! | CTATACTAATTAGGTTAATT+GGG | - | chr8_1:63388604-63388623 | Msa1206390:CDS | 20.0% |
| !! | TATACTAATTAGGTTAATTG+GGG | - | chr8_1:63388605-63388624 | Msa1206390:CDS | 20.0% |
| !!! | TTGGTGTTTTTTATAATGAA+AGG | - | chr8_1:63388691-63388710 | Msa1206390:intron | 20.0% |
| !!! | TGTTTTTTATAATGAAAGGA+TGG | - | chr8_1:63388695-63388714 | Msa1206390:intron | 20.0% |
| !! | ATAGTGTACTTTAGTTATAT+AGG | - | chr8_1:63389014-63389033 | Msa1206390:intron | 20.0% |
| !! | TATTTGAATTAAATACGTCT+AGG | - | chr8_1:63389332-63389351 | Msa1206390:intron | 20.0% |
| !!! | TATGTTAGTATTTTTCTTCA+GGG | + | chr8_1:63389365-63389384 | None:intergenic | 20.0% |
| !!! | TTATGTTAGTATTTTTCTTC+AGG | + | chr8_1:63389366-63389385 | None:intergenic | 20.0% |
| !! | TTATTAGTTGAACAATGAAT+TGG | - | chr8_1:63389423-63389442 | Msa1206390:intron | 20.0% |
| !! | TGAAAGAATTGATATATGTT+TGG | - | chr8_1:63389544-63389563 | Msa1206390:intron | 20.0% |
| !! | CATAGCTATATACAAATAAA+TGG | - | chr8_1:63389658-63389677 | Msa1206390:intron | 20.0% |
| !!! | GAACTGTATTTTTTCTTTTT+TGG | + | chr8_1:63389894-63389913 | None:intergenic | 20.0% |
| !! | TGTATAAAATATCCAAAACT+TGG | - | chr8_1:63389927-63389946 | Msa1206390:intron | 20.0% |
| !!! | TCTTGACCATAAATATTTTT+TGG | - | chr8_1:63389954-63389973 | Msa1206390:intron | 20.0% |
| !!! | CTTGACCATAAATATTTTTT+GGG | - | chr8_1:63389955-63389974 | Msa1206390:intron | 20.0% |
| !!! | TTGACCATAAATATTTTTTG+GGG | - | chr8_1:63389956-63389975 | Msa1206390:intron | 20.0% |
| !! | TTAAATACAAACCAAAATGA+AGG | - | chr8_1:63390024-63390043 | Msa1206390:CDS | 20.0% |
| !!! | AAGCTATATATTCTTTGAAA+TGG | - | chr8_1:63390485-63390504 | Msa1206390:intron | 20.0% |
| !! | TTAGTTAATTGTCTTATCTT+TGG | - | chr8_1:63390809-63390828 | Msa1206390:CDS | 20.0% |
| !! | TAGTTAATTGTCTTATCTTT+GGG | - | chr8_1:63390810-63390829 | Msa1206390:CDS | 20.0% |
| !! | AAATGTACATATATATTGTG+GGG | - | chr8_1:63391553-63391572 | Msa1206390:CDS | 20.0% |
| !! | ATTATGCTATATATCTTGTA+CGG | - | chr8_1:63391613-63391632 | Msa1206390:five_prime_UTR | 20.0% |
| ! | ACATGAAAAGGAAACTTAAT+TGG | - | chr8_1:63387709-63387728 | Msa1206390:CDS | 25.0% |
| ! | ATATAGGAAATAAAGACTGA+AGG | + | chr8_1:63387822-63387841 | None:intergenic | 25.0% |
| ! | TTTATTTCCTATATCATAGC+TGG | - | chr8_1:63387828-63387847 | Msa1206390:CDS | 25.0% |
| !!! | GAATATTTGAGTTTTGCTTT+TGG | - | chr8_1:63388245-63388264 | Msa1206390:intron | 25.0% |
| ! | CTTCAAAATCCTTTATATTG+CGG | - | chr8_1:63388561-63388580 | Msa1206390:CDS | 25.0% |
| !! | TTTTGGATTAACCAAGTTTT+TGG | + | chr8_1:63388949-63388968 | None:intergenic | 25.0% |
| ! | AAAAACTTGGTTAATCCAAA+AGG | - | chr8_1:63388948-63388967 | Msa1206390:intron | 25.0% |
| ! | AAAACTTGGTTAATCCAAAA+GGG | - | chr8_1:63388949-63388968 | Msa1206390:intron | 25.0% |
| ! | AACTTTACTTTATTGCCTAA+TGG | - | chr8_1:63389124-63389143 | Msa1206390:intron | 25.0% |
| ! | AATTCAAATACATTGTTAGG+CGG | + | chr8_1:63389322-63389341 | None:intergenic | 25.0% |
| ! | ATATAAATTACGTGTGTGTT+TGG | - | chr8_1:63389452-63389471 | Msa1206390:intron | 25.0% |
| ! | TAAAGAGAATGAATGTTGTT+TGG | - | chr8_1:63389588-63389607 | Msa1206390:intron | 25.0% |
| !! | AAGTTAAATAATAATGGAGC+TGG | - | chr8_1:63389865-63389884 | Msa1206390:intron | 25.0% |
| ! | TTAGCCCCAAAAAATATTTA+TGG | + | chr8_1:63389963-63389982 | None:intergenic | 25.0% |
| !!! | AATATTTTTTGGGGCTAATT+TGG | - | chr8_1:63389965-63389984 | Msa1206390:intron | 25.0% |
| !! | TTATCAATTCTCCTTCATTT+TGG | + | chr8_1:63390038-63390057 | None:intergenic | 25.0% |
| ! | AAATGAAGGAGAATTGATAA+AGG | - | chr8_1:63390038-63390057 | Msa1206390:CDS | 25.0% |
| ! | GAATTGATAAAGGACAATAA+AGG | - | chr8_1:63390048-63390067 | Msa1206390:CDS | 25.0% |
| ! | AGGACAATAAAGGAAAATAA+TGG | - | chr8_1:63390058-63390077 | Msa1206390:CDS | 25.0% |
| ! | GGACAATAAAGGAAAATAAT+GGG | - | chr8_1:63390059-63390078 | Msa1206390:CDS | 25.0% |
| ! | GTGTTCACCAAAAAAAAAAA+AGG | - | chr8_1:63390081-63390100 | Msa1206390:CDS | 25.0% |
| !!! | AATTGCCTTTTTCAATTTTG+AGG | - | chr8_1:63390248-63390267 | Msa1206390:CDS | 25.0% |
| ! | AGTTAATTGTCTTATCTTTG+GGG | - | chr8_1:63390811-63390830 | Msa1206390:CDS | 25.0% |
| !!! | ATAATTGAGTTGATTAGCAT+TGG | - | chr8_1:63390976-63390995 | Msa1206390:CDS | 25.0% |
| !!! | TACATTTTTAGTGTCTATGT+AGG | + | chr8_1:63391540-63391559 | None:intergenic | 25.0% |
| !! | GTAGAATTGATGTTTTCTAA+AGG | - | chr8_1:63391575-63391594 | Msa1206390:CDS | 25.0% |
| !! | TATATATCTTGTACGGTTTT+GGG | - | chr8_1:63391620-63391639 | Msa1206390:five_prime_UTR | 25.0% |
| TGATATTCCAGCTATGATAT+AGG | + | chr8_1:63387838-63387857 | None:intergenic | 30.0% | |
| !!! | TCTTTTTTTGCTTATGATGC+AGG | - | chr8_1:63388140-63388159 | Msa1206390:CDS | 30.0% |
| !!! | AATTCTTGGGATATTTTGGT+GGG | - | chr8_1:63388165-63388184 | Msa1206390:CDS | 30.0% |
| GAGAAAATAATCCCAATGTA+TGG | - | chr8_1:63388267-63388286 | Msa1206390:intron | 30.0% | |
| TCCAACATGTTATAATCCTT+TGG | + | chr8_1:63388314-63388333 | None:intergenic | 30.0% | |
| TGCAAAATGCGAAAAAAATG+TGG | - | chr8_1:63388498-63388517 | Msa1206390:CDS | 30.0% | |
| AATATCCACCCAATGAAATA+AGG | + | chr8_1:63388633-63388652 | None:intergenic | 30.0% | |
| !! | GAATATTTAACTGGCTTTAG+TGG | - | chr8_1:63388748-63388767 | Msa1206390:intron | 30.0% |
| ! | GATGATTGATTTCAGTACAA+AGG | - | chr8_1:63388836-63388855 | Msa1206390:intron | 30.0% |
| TGTCATAATGAGGTTCAATA+TGG | + | chr8_1:63388868-63388887 | None:intergenic | 30.0% | |
| TGAATCCAAAGAAAATCACA+TGG | + | chr8_1:63388896-63388915 | None:intergenic | 30.0% | |
| ATATGACTGACCTTATTGTA+AGG | + | chr8_1:63389173-63389192 | None:intergenic | 30.0% | |
| ! | TTCTAGTTAACTCAAAAGCT+AGG | - | chr8_1:63390153-63390172 | Msa1206390:CDS | 30.0% |
| ! | AAGGCAATTTTTCACATGTT+TGG | + | chr8_1:63390237-63390256 | None:intergenic | 30.0% |
| TAGAGCCTCAAAATTGAAAA+AGG | + | chr8_1:63390256-63390275 | None:intergenic | 30.0% | |
| TTAATTGCTTTACCTCTAGA+AGG | + | chr8_1:63390365-63390384 | None:intergenic | 30.0% | |
| !! | AGAGAAAGCATCATATTCAA+TGG | - | chr8_1:63390520-63390539 | Msa1206390:intron | 30.0% |
| TCAATGGCTTTCCTTAATAT+TGG | - | chr8_1:63390536-63390555 | Msa1206390:intron | 30.0% | |
| ! | AAAAAGATAGTGGCATTCAA+TGG | + | chr8_1:63390722-63390741 | None:intergenic | 30.0% |
| ! | ATTGAATGCCACTATCTTTT+TGG | - | chr8_1:63390721-63390740 | Msa1206390:intron | 30.0% |
| ! | TTGAATGCCACTATCTTTTT+GGG | - | chr8_1:63390722-63390741 | Msa1206390:intron | 30.0% |
| ATCAATTCATTTATTGACGC+AGG | - | chr8_1:63390910-63390929 | Msa1206390:CDS | 30.0% | |
| CTGTTTGAATTTCCAAACTA+TGG | + | chr8_1:63391130-63391149 | None:intergenic | 30.0% | |
| TTTGGAAATTCAAACAGCAA+TGG | - | chr8_1:63391133-63391152 | Msa1206390:intron | 30.0% | |
| AAAAACTGTGATTGTGATCA+TGG | + | chr8_1:63391184-63391203 | None:intergenic | 30.0% | |
| AACAAGAATATGCTCAATGT+TGG | - | chr8_1:63391241-63391260 | Msa1206390:CDS | 30.0% | |
| TAGTCATGAGAAAAACATTG+AGG | + | chr8_1:63391308-63391327 | None:intergenic | 30.0% | |
| ! | ACCATGTTTTATGTGCTTTA+TGG | - | chr8_1:63391378-63391397 | Msa1206390:CDS | 30.0% |
| ACCATAAAGCACATAAAACA+TGG | + | chr8_1:63391382-63391401 | None:intergenic | 30.0% | |
| AGTTGGTTACACTCAAATTT+GGG | + | chr8_1:63391464-63391483 | None:intergenic | 30.0% | |
| ! | AAGTTGGTTACACTCAAATT+TGG | + | chr8_1:63391465-63391484 | None:intergenic | 30.0% |
| TGTAACCAACTTACAAACTA+AGG | - | chr8_1:63391473-63391492 | Msa1206390:CDS | 30.0% | |
| ! | CTATATATCTTGTACGGTTT+TGG | - | chr8_1:63391619-63391638 | Msa1206390:five_prime_UTR | 30.0% |
| ! | TGTTGTTGGTTGTTGTAATG+TGG | + | chr8_1:63387566-63387585 | None:intergenic | 35.0% |
| TGACAATGTTGTCATGTTGT+TGG | + | chr8_1:63387580-63387599 | None:intergenic | 35.0% | |
| TTATGATGCAGGAGAATTCT+TGG | - | chr8_1:63388151-63388170 | Msa1206390:CDS | 35.0% | |
| TATGATGCAGGAGAATTCTT+GGG | - | chr8_1:63388152-63388171 | Msa1206390:CDS | 35.0% | |
| ! | GGAGAATTCTTGGGATATTT+TGG | - | chr8_1:63388161-63388180 | Msa1206390:CDS | 35.0% |
| !! | GAATTCTTGGGATATTTTGG+TGG | - | chr8_1:63388164-63388183 | Msa1206390:CDS | 35.0% |
| !!! | ATTCTTGGGATATTTTGGTG+GGG | - | chr8_1:63388166-63388185 | Msa1206390:CDS | 35.0% |
| GCCAAAGGATTATAACATGT+TGG | - | chr8_1:63388310-63388329 | Msa1206390:intron | 35.0% | |
| CGAAAAAAATGTGGTTGACA+TGG | - | chr8_1:63388507-63388526 | Msa1206390:CDS | 35.0% | |
| ! | ATTGGGGAACCTTATTTCAT+TGG | - | chr8_1:63388621-63388640 | Msa1206390:CDS | 35.0% |
| ! | TTGGGGAACCTTATTTCATT+GGG | - | chr8_1:63388622-63388641 | Msa1206390:CDS | 35.0% |
| ! | GTGTTCCATGTGATTTTCTT+TGG | - | chr8_1:63388888-63388907 | Msa1206390:intron | 35.0% |
| TTTCTTTGGATTCATCGTTG+TGG | - | chr8_1:63388902-63388921 | Msa1206390:intron | 35.0% | |
| !! | CAATGGAAGTACCAAAAACT+TGG | - | chr8_1:63388935-63388954 | Msa1206390:intron | 35.0% |
| CATGATGGTTCCTTACAATA+AGG | - | chr8_1:63389160-63389179 | Msa1206390:intron | 35.0% | |
| TAGAATAAGCTGAACCAAAC+AGG | - | chr8_1:63390292-63390311 | Msa1206390:CDS | 35.0% | |
| CTAGTTAGAATTCCTTCTAG+AGG | - | chr8_1:63390350-63390369 | Msa1206390:intron | 35.0% | |
| TGGCTTTCCTTAATATTGGT+TGG | - | chr8_1:63390540-63390559 | Msa1206390:intron | 35.0% | |
| ! | TCCTTAATATTGGTTGGAGT+TGG | - | chr8_1:63390546-63390565 | Msa1206390:intron | 35.0% |
| ! | CCTTAATATTGGTTGGAGTT+GGG | - | chr8_1:63390547-63390566 | Msa1206390:intron | 35.0% |
| ! | TCTCTTCTAGTTGCAATGTT+AGG | - | chr8_1:63390614-63390633 | Msa1206390:intron | 35.0% |
| TTGCTTACCCAAAAAGATAG+TGG | + | chr8_1:63390732-63390751 | None:intergenic | 35.0% | |
| TCAAGCTCTTATCATTAAGC+CGG | + | chr8_1:63390839-63390858 | None:intergenic | 35.0% | |
| ! | AACAAAAGTGTGTGTAAAGG+CGG | + | chr8_1:63391072-63391091 | None:intergenic | 35.0% |
| ! | AGGAACAAAAGTGTGTGTAA+AGG | + | chr8_1:63391075-63391094 | None:intergenic | 35.0% |
| GAAATTCAAACAGCAATGGT+GGG | - | chr8_1:63391137-63391156 | Msa1206390:intron | 35.0% | |
| AAATTCAAACAGCAATGGTG+GGG | - | chr8_1:63391138-63391157 | Msa1206390:intron | 35.0% | |
| !!! | CACAGTTTTTTTCCAACACA+TGG | - | chr8_1:63391194-63391213 | Msa1206390:intron | 35.0% |
| ! | TGTACAAGGTTGTTGTTACA+AGG | + | chr8_1:63391222-63391241 | None:intergenic | 35.0% |
| ! | GAGCATATTCTTGTTGTACA+AGG | + | chr8_1:63391236-63391255 | None:intergenic | 35.0% |
| GAGAAAAACATTGAGGAAGA+TGG | + | chr8_1:63391301-63391320 | None:intergenic | 35.0% | |
| !!! | TTGGAAAGAGAGTGTTTTGA+GGG | + | chr8_1:63391331-63391350 | None:intergenic | 35.0% |
| AACCAACTTACAAACTAAGG+TGG | - | chr8_1:63391476-63391495 | Msa1206390:CDS | 35.0% | |
| !! | TTCCACCTTAGTTTGTAAGT+TGG | + | chr8_1:63391481-63391500 | None:intergenic | 35.0% |
| ! | ATTCTTTTCCTAAGCCTGTG+TGG | + | chr8_1:63387630-63387649 | None:intergenic | 40.0% |
| GGAAAAGAATGCTAGCAACA+TGG | - | chr8_1:63387640-63387659 | Msa1206390:three_prime_UTR | 40.0% | |
| ACTTGGTTGAATTCTTGGTC+TGG | + | chr8_1:63387669-63387688 | None:intergenic | 40.0% | |
| ACCAAGAATTCAACCAAGTG+AGG | - | chr8_1:63387670-63387689 | Msa1206390:exon | 40.0% | |
| TGGTATGATCTTGTAGCTCT+TGG | - | chr8_1:63387729-63387748 | Msa1206390:CDS | 40.0% | |
| ! | GTTGGTGTGTTTGTTACTAC+TGG | - | chr8_1:63387771-63387790 | Msa1206390:CDS | 40.0% |
| GTGTTGGACACGTCTTTAAT+CGG | + | chr8_1:63388002-63388021 | None:intergenic | 40.0% | |
| TGGTGGGGCAAATATACTAA+TGG | - | chr8_1:63388181-63388200 | Msa1206390:CDS | 40.0% | |
| TAATCCCAATGTATGGAGAG+TGG | - | chr8_1:63388274-63388293 | Msa1206390:intron | 40.0% | |
| ACTTCCACTCTCCATACATT+GGG | + | chr8_1:63388281-63388300 | None:intergenic | 40.0% | |
| AACTTCCACTCTCCATACAT+TGG | + | chr8_1:63388282-63388301 | None:intergenic | 40.0% | |
| TATGACACAAGCAAAGAGTG+AGG | + | chr8_1:63388364-63388383 | None:intergenic | 40.0% | |
| TCACTCTTTGCTTGTGTCAT+AGG | - | chr8_1:63388363-63388382 | Msa1206390:intron | 40.0% | |
| !!! | GGATTTTGAAGTCTCTGCAA+CGG | + | chr8_1:63388552-63388571 | None:intergenic | 40.0% |
| TGTGACAGCTAACACAAACT+TGG | - | chr8_1:63388672-63388691 | Msa1206390:intron | 40.0% | |
| CATGGAACACTGTCATAATG+AGG | + | chr8_1:63388878-63388897 | None:intergenic | 40.0% | |
| ! | GTTGTGGCTGGTTATTACAA+TGG | - | chr8_1:63388918-63388937 | Msa1206390:intron | 40.0% |
| ! | ATAGCTCCTTATGGTGTTAG+AGG | - | chr8_1:63388972-63388991 | Msa1206390:intron | 40.0% |
| AGAACACCTCTAACACCATA+AGG | + | chr8_1:63388981-63389000 | None:intergenic | 40.0% | |
| CTATGATTCAGCTTCAACCA+TGG | - | chr8_1:63389037-63389056 | Msa1206390:intron | 40.0% | |
| CCAATAGGTAGGCTCTTATA+AGG | + | chr8_1:63389080-63389099 | None:intergenic | 40.0% | |
| CCTTATAAGAGCCTACCTAT+TGG | - | chr8_1:63389077-63389096 | Msa1206390:intron | 40.0% | |
| AGCCTACCTATTGGAATAGT+GGG | - | chr8_1:63389086-63389105 | Msa1206390:intron | 40.0% | |
| AACCCACTATTCCAATAGGT+AGG | + | chr8_1:63389091-63389110 | None:intergenic | 40.0% | |
| ACTGAACCCACTATTCCAAT+AGG | + | chr8_1:63389095-63389114 | None:intergenic | 40.0% | |
| ! | GGTCAAGAGTTACCAAGTTT+TGG | + | chr8_1:63389942-63389961 | None:intergenic | 40.0% |
| CTCTTCTGCAAAAGCTATTC+TGG | + | chr8_1:63390193-63390212 | None:intergenic | 40.0% | |
| ! | ATTCTAGTTACGAGCCTGTT+TGG | + | chr8_1:63390309-63390328 | None:intergenic | 40.0% |
| CCCAACTCCAACCAATATTA+AGG | + | chr8_1:63390550-63390569 | None:intergenic | 40.0% | |
| AGGTGCAAGTTTAGGTATAG+TGG | - | chr8_1:63390589-63390608 | Msa1206390:intron | 40.0% | |
| ATACCTTTGTGTCATGGGAA+GGG | - | chr8_1:63390646-63390665 | Msa1206390:intron | 40.0% | |
| TGTACTTTGGCTAACCAAGA+TGG | + | chr8_1:63390683-63390702 | None:intergenic | 40.0% | |
| !! | TTGTCTTATCTTTGGGGTTC+CGG | - | chr8_1:63390817-63390836 | Msa1206390:CDS | 40.0% |
| TACCGTCGCTATGTAATCAT+CGG | - | chr8_1:63391039-63391058 | Msa1206390:intron | 40.0% | |
| ! | CCAAACTATGGAGAAGCATA+AGG | + | chr8_1:63391118-63391137 | None:intergenic | 40.0% |
| CCTTATGCTTCTCCATAGTT+TGG | - | chr8_1:63391115-63391134 | Msa1206390:intron | 40.0% | |
| GGAAATTCAAACAGCAATGG+TGG | - | chr8_1:63391136-63391155 | Msa1206390:intron | 40.0% | |
| TTGAGGAAGATGGACATTGA+AGG | + | chr8_1:63391291-63391310 | None:intergenic | 40.0% | |
| !!! | GTTGGAAAGAGAGTGTTTTG+AGG | + | chr8_1:63391332-63391351 | None:intergenic | 40.0% |
| ! | CTTTCCAACGCTTTGCTATA+TGG | - | chr8_1:63391343-63391362 | Msa1206390:CDS | 40.0% |
| ATGACCATATAGCAAAGCGT+TGG | + | chr8_1:63391350-63391369 | None:intergenic | 40.0% | |
| ACCCAAATTCTCAATCTCCT+CGG | + | chr8_1:63391424-63391443 | None:intergenic | 40.0% | |
| ! | TTTGGGTGGTGTTAATCAAG+TGG | - | chr8_1:63391437-63391456 | Msa1206390:CDS | 40.0% |
| CTTCAGCTAACTAACGCATT+TGG | + | chr8_1:63391506-63391525 | None:intergenic | 40.0% | |
| GTGGAGTTTGTGAGAGTGAA+TGG | + | chr8_1:63387611-63387630 | None:intergenic | 45.0% | |
| GCCTCACTTGGTTGAATTCT+TGG | + | chr8_1:63387674-63387693 | None:intergenic | 45.0% | |
| AATTCAACCAAGTGAGGCAG+AGG | - | chr8_1:63387676-63387695 | Msa1206390:CDS | 45.0% | |
| GATCTTGTAGCTCTTGGAGT+TGG | - | chr8_1:63387735-63387754 | Msa1206390:CDS | 45.0% | |
| CCAGATTGATGAAGAGCAAC+AGG | + | chr8_1:63387798-63387817 | None:intergenic | 45.0% | |
| CCTGTTGCTCTTCATCAATC+TGG | - | chr8_1:63387795-63387814 | Msa1206390:CDS | 45.0% | |
| AAAGACGTGTCCAACACGTT+TGG | - | chr8_1:63388005-63388024 | Msa1206390:CDS | 45.0% | |
| AAGACGTGTCCAACACGTTT+GGG | - | chr8_1:63388006-63388025 | Msa1206390:CDS | 45.0% | |
| TCTCAAATGCTGCTGTAGCT+AGG | - | chr8_1:63388213-63388232 | Msa1206390:CDS | 45.0% | |
| GTATGGAGAGTGGAAGTTCA+TGG | - | chr8_1:63388284-63388303 | Msa1206390:intron | 45.0% | |
| ! | GGAAGTTCATGGATTGCCAA+AGG | - | chr8_1:63388295-63388314 | Msa1206390:intron | 45.0% |
| AGAAGAATGAGAGCTACTGC+TGG | + | chr8_1:63388341-63388360 | None:intergenic | 45.0% | |
| GGTCTGCAACCGCAATATAA+AGG | + | chr8_1:63388573-63388592 | None:intergenic | 45.0% | |
| ! | GGGAACCTTATTTCATTGGG+TGG | - | chr8_1:63388625-63388644 | Msa1206390:CDS | 45.0% |
| TTTGGATTCATCGTTGTGGC+TGG | - | chr8_1:63388906-63388925 | Msa1206390:intron | 45.0% | |
| ! | CCATAAGGAGCTATCCCTTT+TGG | + | chr8_1:63388966-63388985 | None:intergenic | 45.0% |
| CCAAAAGGGATAGCTCCTTA+TGG | - | chr8_1:63388963-63388982 | Msa1206390:intron | 45.0% | |
| !! | GGTGTTAGAGGTGTTCTTGA+TGG | - | chr8_1:63388984-63389003 | Msa1206390:intron | 45.0% |
| GAGCCTACCTATTGGAATAG+TGG | - | chr8_1:63389085-63389104 | Msa1206390:intron | 45.0% | |
| TGCACAAAGACAGAGCCATT+AGG | + | chr8_1:63389142-63389161 | None:intergenic | 45.0% | |
| ! | GTGTGTGTTTGGTTCAGCTT+TGG | - | chr8_1:63389463-63389482 | Msa1206390:intron | 45.0% |
| AGTTGGGCAAGCAACATTGT+TGG | - | chr8_1:63390563-63390582 | Msa1206390:intron | 45.0% | |
| AGCCAGATACCTTTGTGTCA+TGG | - | chr8_1:63390640-63390659 | Msa1206390:intron | 45.0% | |
| GCCAGATACCTTTGTGTCAT+GGG | - | chr8_1:63390641-63390660 | Msa1206390:intron | 45.0% | |
| !! | TCCCATGACACAAAGGTATC+TGG | + | chr8_1:63390645-63390664 | None:intergenic | 45.0% |
| GATACCTTTGTGTCATGGGA+AGG | - | chr8_1:63390645-63390664 | Msa1206390:intron | 45.0% | |
| GCCAAAGTACATCCTTCAAC+AGG | - | chr8_1:63390692-63390711 | Msa1206390:intron | 45.0% | |
| GCCTGTTGAAGGATGTACTT+TGG | + | chr8_1:63390696-63390715 | None:intergenic | 45.0% | |
| ! | TTCAATGGAGTGCCTGTTGA+AGG | + | chr8_1:63390707-63390726 | None:intergenic | 45.0% |
| !! | GATTAGCATTGGCACGCTAA+TGG | - | chr8_1:63390987-63391006 | Msa1206390:CDS | 45.0% |
| CACGCTAATGGTGTTCTACA+TGG | - | chr8_1:63390999-63391018 | Msa1206390:CDS | 45.0% | |
| AAGTGAGGGAGAGAAGAAAG+AGG | + | chr8_1:63391095-63391114 | None:intergenic | 45.0% | |
| ! | GGAGAAGCATAAGGAAGTGA+GGG | + | chr8_1:63391109-63391128 | None:intergenic | 45.0% |
| ! | TGGAGAAGCATAAGGAAGTG+AGG | + | chr8_1:63391110-63391129 | None:intergenic | 45.0% |
| ! | TGTTACAAGGCACCATGTGT+TGG | + | chr8_1:63391209-63391228 | None:intergenic | 45.0% |
| AGGAAGATGGACATTGAAGG+TGG | + | chr8_1:63391288-63391307 | None:intergenic | 45.0% | |
| AGCCGAGGAGATTGAGAATT+TGG | - | chr8_1:63391419-63391438 | Msa1206390:CDS | 45.0% | |
| GCCGAGGAGATTGAGAATTT+GGG | - | chr8_1:63391420-63391439 | Msa1206390:CDS | 45.0% | |
| GAGGAGATTGAGAATTTGGG+TGG | - | chr8_1:63391423-63391442 | Msa1206390:CDS | 45.0% | |
| !!! | ATATTTAAGTTAAATAATAA+TGG | - | chr8_1:63389859-63389878 | Msa1206390:intron | 5.0% |
| !! | AATCAAAATATAAAATTTAA+TGG | - | chr8_1:63390122-63390141 | Msa1206390:CDS | 5.0% |
| CACTCTCACAAACTCCACAC+AGG | - | chr8_1:63387613-63387632 | Msa1206390:three_prime_UTR | 50.0% | |
| CACAAACTCCACACAGGCTT+AGG | - | chr8_1:63387619-63387638 | Msa1206390:three_prime_UTR | 50.0% | |
| GGTCTGGTGCAGACATGAAA+AGG | - | chr8_1:63387697-63387716 | Msa1206390:CDS | 50.0% | |
| CTTGTAGCTCTTGGAGTTGG+AGG | - | chr8_1:63387738-63387757 | Msa1206390:CDS | 50.0% | |
| CTTGGAGTTGGAGGAATGCT+TGG | - | chr8_1:63387747-63387766 | Msa1206390:CDS | 50.0% | |
| !! | GTTGGAGGAATGCTTGGTGT+TGG | - | chr8_1:63387753-63387772 | Msa1206390:CDS | 50.0% |
| ! | GCAGTTCAAGTTCCAGTTGC+TGG | - | chr8_1:63387891-63387910 | Msa1206390:CDS | 50.0% |
| ! | GTTCAAGTTCCAGTTGCTGG+AGG | - | chr8_1:63387894-63387913 | Msa1206390:CDS | 50.0% |
| ! | GTGTCCAACACGTTTGGGTT+TGG | - | chr8_1:63388011-63388030 | Msa1206390:CDS | 50.0% |
| CTGTCCAAACCCAAACGTGT+TGG | + | chr8_1:63388018-63388037 | None:intergenic | 50.0% | |
| TTCAGCTTCAACCATGGCTG+AGG | - | chr8_1:63389043-63389062 | Msa1206390:intron | 50.0% | |
| GGCTCTGTCTTTGTGCATGA+TGG | - | chr8_1:63389145-63389164 | Msa1206390:intron | 50.0% | |
| GCAAGCAACATTGTTGGAGC+AGG | - | chr8_1:63390569-63390588 | Msa1206390:intron | 50.0% | |
| GTTGGAGCAGGTGCAAGTTT+AGG | - | chr8_1:63390581-63390600 | Msa1206390:intron | 50.0% | |
| TTGCCCTTCCCATGACACAA+AGG | + | chr8_1:63390652-63390671 | None:intergenic | 50.0% | |
| TTTGTGTCATGGGAAGGGCA+AGG | - | chr8_1:63390651-63390670 | Msa1206390:intron | 50.0% | |
| GGCCGATGATTACATAGCGA+CGG | + | chr8_1:63391044-63391063 | None:intergenic | 50.0% | |
| GTGTGTGTAAAGGCGGTGTA+TGG | + | chr8_1:63391065-63391084 | None:intergenic | 50.0% | |
| TGGTGGGGTCTCTTACTCTT+CGG | - | chr8_1:63391153-63391172 | Msa1206390:intron | 50.0% | |
| ! | GGTATGTGCCATTCATGCCA+TGG | - | chr8_1:63391262-63391281 | Msa1206390:CDS | 50.0% |
| ATGGACATTGAAGGTGGCCA+TGG | + | chr8_1:63391282-63391301 | None:intergenic | 50.0% | |
| TCACTCTACGTATCAAGCCG+AGG | - | chr8_1:63391404-63391423 | Msa1206390:CDS | 50.0% | |
| AACCAAGTGAGGCAGAGGTC+TGG | - | chr8_1:63387681-63387700 | Msa1206390:CDS | 55.0% | |
| CTGAAAGCTCCTCCAGCAAC+TGG | + | chr8_1:63387906-63387925 | None:intergenic | 55.0% | |
| AGCTTCAACCATGGCTGAGG+AGG | - | chr8_1:63389046-63389065 | Msa1206390:intron | 55.0% | |
| AACCATGGCTGAGGAGGTCA+AGG | - | chr8_1:63389052-63389071 | Msa1206390:intron | 55.0% | |
| ATCCTTGACCTCCTCAGCCA+TGG | + | chr8_1:63389057-63389076 | None:intergenic | 55.0% | |
| ! | GGGCAAGGCTTGTTCCATCT+TGG | - | chr8_1:63390666-63390685 | Msa1206390:intron | 55.0% |
| TGGGGTCTCTTACTCTTCGG+TGG | - | chr8_1:63391156-63391175 | Msa1206390:intron | 55.0% | |
| GAAGGTGGCCATGGCATGAA+TGG | + | chr8_1:63391273-63391292 | None:intergenic | 55.0% | |
| CACCAGACCTCTGCCTCACT+TGG | + | chr8_1:63387686-63387705 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 63387519 | 63391667 | 63387519 | ID=Msa1206390;Name=Msa1206390 |
| chr8_1 | mRNA | 63387519 | 63391667 | 63387519 | ID=Msa1206390-mRNA-1;Parent=Msa1206390;Name=Msa1206390-mRNA-1;_AED=0.17;_eAED=0.17;_QI=66|1|1|1|1|1|5|152|575 |
| chr8_1 | exon | 63387519 | 63388254 | 63387519 | ID=Msa1206390-mRNA-1:exon:20593;Parent=Msa1206390-mRNA-1 |
| chr8_1 | exon | 63388443 | 63388671 | 63388443 | ID=Msa1206390-mRNA-1:exon:20592;Parent=Msa1206390-mRNA-1 |
| chr8_1 | exon | 63390005 | 63390335 | 63390005 | ID=Msa1206390-mRNA-1:exon:20591;Parent=Msa1206390-mRNA-1 |
| chr8_1 | exon | 63390802 | 63391024 | 63390802 | ID=Msa1206390-mRNA-1:exon:20590;Parent=Msa1206390-mRNA-1 |
| chr8_1 | exon | 63391241 | 63391667 | 63391241 | ID=Msa1206390-mRNA-1:exon:20589;Parent=Msa1206390-mRNA-1 |
| chr8_1 | five_prime_UTR | 63391602 | 63391667 | 63391602 | ID=Msa1206390-mRNA-1:five_prime_utr;Parent=Msa1206390-mRNA-1 |
| chr8_1 | CDS | 63391241 | 63391601 | 63391241 | ID=Msa1206390-mRNA-1:cds;Parent=Msa1206390-mRNA-1 |
| chr8_1 | CDS | 63390802 | 63391024 | 63390802 | ID=Msa1206390-mRNA-1:cds;Parent=Msa1206390-mRNA-1 |
| chr8_1 | CDS | 63390005 | 63390335 | 63390005 | ID=Msa1206390-mRNA-1:cds;Parent=Msa1206390-mRNA-1 |
| chr8_1 | CDS | 63388443 | 63388671 | 63388443 | ID=Msa1206390-mRNA-1:cds;Parent=Msa1206390-mRNA-1 |
| chr8_1 | CDS | 63387671 | 63388254 | 63387671 | ID=Msa1206390-mRNA-1:cds;Parent=Msa1206390-mRNA-1 |
| chr8_1 | three_prime_UTR | 63387519 | 63387670 | 63387519 | ID=Msa1206390-mRNA-1:three_prime_utr;Parent=Msa1206390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
