Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1206340 | XP_013457578.2 | 98.087 | 575 | 11 | 0 | 1 | 575 | 1 | 575 | 0.0 | 1157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1206340 | sp|Q9LZ20|CAAT6_ARATH | 52.313 | 562 | 250 | 6 | 2 | 552 | 16 | 570 | 0.0 | 574 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045620 | Msa1206340 | 0.813457 | 2.535277e-51 | -8.615850e-47 |
| Msa0623310 | Msa1206340 | 0.812828 | 3.483902e-51 | -8.615850e-47 |
| Msa0136090 | Msa1206340 | 0.818200 | 2.219114e-52 | -8.615850e-47 |
| Msa0206370 | Msa1206340 | 0.808081 | 3.689357e-50 | -8.615850e-47 |
| Msa0223040 | Msa1206340 | 0.816842 | 4.488416e-52 | -8.615850e-47 |
| Msa1042300 | Msa1206340 | 0.821797 | 3.335463e-53 | -8.615850e-47 |
| Msa0260980 | Msa1206340 | 0.803400 | 3.550346e-49 | -8.615850e-47 |
| Msa0264230 | Msa1206340 | 0.839448 | 1.574966e-57 | -8.615850e-47 |
| Msa0302200 | Msa1206340 | 0.831529 | 1.585140e-55 | -8.615850e-47 |
| Msa0336430 | Msa1206340 | 0.811137 | 8.136515e-51 | -8.615850e-47 |
| Msa0336460 | Msa1206340 | 0.809997 | 1.434842e-50 | -8.615850e-47 |
| Msa0336520 | Msa1206340 | 0.805184 | 1.508627e-49 | -8.615850e-47 |
| Msa0339530 | Msa1206340 | 0.830861 | 2.313446e-55 | -8.615850e-47 |
| Msa1206340 | Msa1206390 | 0.996335 | 3.122078e-226 | -8.615850e-47 |
| Msa1206340 | Msa1255710 | 0.812594 | 3.920237e-51 | -8.615850e-47 |
| Msa1206340 | Msa1256720 | 0.971644 | 1.729552e-133 | -8.615850e-47 |
| Msa1206340 | Msa1273320 | 0.802172 | 6.364302e-49 | -8.615850e-47 |
| Msa1206340 | Msa1371800 | 0.819189 | 1.323716e-52 | -8.615850e-47 |
| Msa1206340 | Msa1376310 | 0.818556 | 1.843439e-52 | -8.615850e-47 |
| Msa1206340 | Msa1390460 | 0.976816 | 1.487370e-142 | -8.615850e-47 |
| Msa0876630 | Msa1206340 | 0.812756 | 3.612844e-51 | -8.615850e-47 |
| Msa0978980 | Msa1206340 | 0.822951 | 1.799470e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1206340 | MtrunA17_Chr4g0055481 | 98.087 | 575 | 11 | 0 | 1 | 575 | 1 | 575 | 0.0 | 1157 |
| Msa1206340 | MtrunA17_Chr1g0210461 | 49.485 | 582 | 271 | 6 | 2 | 573 | 9 | 577 | 0.0 | 569 |
| Msa1206340 | MtrunA17_Chr1g0160231 | 42.294 | 558 | 302 | 6 | 3 | 551 | 27 | 573 | 1.08e-146 | 436 |
| Msa1206340 | MtrunA17_Chr2g0296921 | 40.901 | 555 | 315 | 5 | 5 | 555 | 34 | 579 | 1.88e-145 | 432 |
| Msa1206340 | MtrunA17_Chr8g0381021 | 41.016 | 551 | 310 | 6 | 5 | 550 | 34 | 574 | 2.50e-140 | 419 |
| Msa1206340 | MtrunA17_Chr8g0381051 | 39.206 | 579 | 325 | 8 | 3 | 571 | 37 | 598 | 1.15e-138 | 415 |
| Msa1206340 | MtrunA17_Chr8g0381031 | 41.304 | 552 | 308 | 6 | 5 | 550 | 35 | 576 | 7.94e-134 | 403 |
| Msa1206340 | MtrunA17_Chr8g0358951 | 36.496 | 548 | 335 | 4 | 3 | 547 | 39 | 576 | 1.84e-114 | 352 |
| Msa1206340 | MtrunA17_Chr7g0254011 | 37.745 | 408 | 251 | 1 | 30 | 434 | 25 | 432 | 2.77e-73 | 246 |
| Msa1206340 | MtrunA17_Chr7g0254061 | 35.222 | 406 | 260 | 1 | 26 | 428 | 15 | 420 | 3.31e-72 | 243 |
| Msa1206340 | MtrunA17_Chr6g0460911 | 33.661 | 407 | 258 | 4 | 33 | 434 | 36 | 435 | 3.70e-68 | 232 |
| Msa1206340 | MtrunA17_Chr6g0460881 | 33.415 | 407 | 259 | 4 | 33 | 434 | 33 | 432 | 1.31e-66 | 228 |
| Msa1206340 | MtrunA17_Chr6g0460901 | 34.091 | 396 | 252 | 4 | 33 | 422 | 34 | 426 | 1.52e-66 | 228 |
| Msa1206340 | MtrunA17_Chr7g0215781 | 31.550 | 542 | 339 | 16 | 20 | 547 | 31 | 554 | 2.25e-64 | 220 |
| Msa1206340 | MtrunA17_Chr6g0460891 | 31.618 | 408 | 265 | 5 | 30 | 431 | 23 | 422 | 2.74e-63 | 220 |
| Msa1206340 | MtrunA17_Chr6g0463361 | 33.065 | 248 | 149 | 4 | 322 | 558 | 2 | 243 | 8.86e-33 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1206340 | AT5G04770.1 | 52.313 | 562 | 250 | 6 | 2 | 552 | 16 | 570 | 0.0 | 574 |
| Msa1206340 | AT3G10600.1 | 50.521 | 576 | 259 | 6 | 2 | 558 | 15 | 583 | 0.0 | 553 |
| Msa1206340 | AT4G21120.1 | 41.971 | 548 | 306 | 4 | 3 | 547 | 30 | 568 | 2.17e-159 | 468 |
| Msa1206340 | AT5G04770.2 | 54.156 | 397 | 174 | 3 | 2 | 391 | 16 | 411 | 1.31e-147 | 432 |
| Msa1206340 | AT3G10600.2 | 49.324 | 444 | 199 | 6 | 134 | 558 | 1 | 437 | 2.56e-144 | 424 |
| Msa1206340 | AT5G04770.3 | 51.163 | 430 | 192 | 6 | 134 | 552 | 1 | 423 | 4.00e-141 | 416 |
| Msa1206340 | AT2G34960.1 | 38.256 | 562 | 326 | 7 | 3 | 560 | 24 | 568 | 1.05e-132 | 399 |
| Msa1206340 | AT1G17120.1 | 40.109 | 551 | 305 | 6 | 3 | 544 | 41 | 575 | 3.36e-123 | 375 |
| Msa1206340 | AT4G21120.2 | 40.749 | 427 | 241 | 4 | 124 | 547 | 1 | 418 | 1.97e-110 | 337 |
| Msa1206340 | AT3G03720.1 | 36.224 | 392 | 245 | 3 | 35 | 422 | 16 | 406 | 9.27e-75 | 249 |
| Msa1206340 | AT5G36940.1 | 34.286 | 420 | 269 | 2 | 18 | 434 | 8 | 423 | 9.37e-71 | 239 |
| Msa1206340 | AT1G58030.1 | 34.430 | 395 | 256 | 1 | 37 | 428 | 34 | 428 | 5.95e-70 | 237 |
| Msa1206340 | AT1G05940.1 | 31.204 | 548 | 338 | 10 | 18 | 546 | 26 | 553 | 1.55e-65 | 224 |
| Msa1206340 | AT1G05940.4 | 34.878 | 410 | 252 | 6 | 18 | 420 | 26 | 427 | 1.22e-61 | 212 |
| Msa1206340 | AT1G05940.3 | 34.878 | 410 | 252 | 6 | 18 | 420 | 26 | 427 | 1.81e-61 | 212 |
| Msa1206340 | AT1G05940.2 | 28.475 | 446 | 285 | 7 | 119 | 546 | 6 | 435 | 2.26e-40 | 152 |
Find 146 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTCACTTGGTTGAATTCT+TGG | 0.073222 | 8_1:+63312571 | None:intergenic |
| AGCCGAGGAGATTGAGAATT+TGG | 0.146226 | 8_1:-63308844 | Msa1206340:CDS |
| CTATATATCTTGTACGGTTT+TGG | 0.184776 | 8_1:-63308644 | Msa1206340:three_prime_UTR |
| GGAGAATTCTTGGGATATTT+TGG | 0.185427 | 8_1:-63312081 | Msa1206340:CDS |
| TCACTCTTTGCTTGTGTCAT+AGG | 0.192722 | 8_1:-63311879 | Msa1206340:intron |
| AAGTTGGTTACACTCAAATT+TGG | 0.199523 | 8_1:+63308801 | None:intergenic |
| TATATGAGCACTTAGTTTCT+TGG | 0.214314 | 8_1:+63312724 | None:intergenic |
| CTGTTTGAATTTCCAAACTA+TGG | 0.229022 | 8_1:+63309136 | None:intergenic |
| TCAATGGCTTTCCTTAATAT+TGG | 0.256994 | 8_1:-63309727 | Msa1206340:CDS |
| CCCAACTCCAACCAATATTA+AGG | 0.269543 | 8_1:+63309716 | None:intergenic |
| CCTTATGCTTCTCCATAGTT+TGG | 0.287271 | 8_1:-63309148 | Msa1206340:CDS |
| CCATAAGGAGCTATCCCTTT+TGG | 0.287938 | 8_1:+63311279 | None:intergenic |
| AACTTTACTTTATTGCCTAA+TGG | 0.315376 | 8_1:-63311118 | Msa1206340:CDS |
| TCCTTAATATTGGTTGGAGT+TGG | 0.318656 | 8_1:-63309717 | Msa1206340:CDS |
| TCTCTTCTAGTTGCAATGTT+AGG | 0.325505 | 8_1:-63309649 | Msa1206340:CDS |
| ACATGAAAAGGAAACTTAAT+TGG | 0.331326 | 8_1:-63312533 | Msa1206340:CDS |
| TCCCATGACACAAAGGTATC+TGG | 0.331917 | 8_1:+63309621 | None:intergenic |
| CTTTCCAACGCTTTGCTATA+TGG | 0.333799 | 8_1:-63308920 | Msa1206340:CDS |
| TTATGATGCAGGAGAATTCT+TGG | 0.344760 | 8_1:-63312091 | Msa1206340:intron |
| ATAGTGTACTTTAGTTATAT+AGG | 0.350941 | 8_1:-63311228 | Msa1206340:CDS |
| GCAGTTCAAGTTCCAGTTGC+TGG | 0.352519 | 8_1:-63312351 | Msa1206340:CDS |
| GTTGGAGCAGGTGCAAGTTT+AGG | 0.353177 | 8_1:-63309682 | Msa1206340:CDS |
| CCAATAGGTAGGCTCTTATA+AGG | 0.355464 | 8_1:+63311165 | None:intergenic |
| CATGATGGTTCCTTACAATA+AGG | 0.362306 | 8_1:-63311082 | Msa1206340:intron |
| TGTCATAATGAGGTTCAATA+TGG | 0.363868 | 8_1:+63311377 | None:intergenic |
| TCCAACATGTTATAATCCTT+TGG | 0.364236 | 8_1:+63311931 | None:intergenic |
| CTTCAGCTAACTAACGCATT+TGG | 0.368274 | 8_1:+63308760 | None:intergenic |
| CCTGTTGCTCTTCATCAATC+TGG | 0.370196 | 8_1:-63312447 | Msa1206340:CDS |
| ACTTGGTTGAATTCTTGGTC+TGG | 0.370346 | 8_1:+63312576 | None:intergenic |
| AGTTGGTTACACTCAAATTT+GGG | 0.376212 | 8_1:+63308802 | None:intergenic |
| GGTGTTAGAGGTGTTCTTGA+TGG | 0.391791 | 8_1:-63311258 | Msa1206340:CDS |
| GTTGGTGTGTTTGTTACTAC+TGG | 0.394063 | 8_1:-63312471 | Msa1206340:CDS |
| GGCTCTGTCTTTGTGCATGA+TGG | 0.401655 | 8_1:-63311097 | Msa1206340:CDS |
| CTGAAAGCTCCTCCAGCAAC+TGG | 0.405724 | 8_1:+63312339 | None:intergenic |
| TTTATTTCCTATATCATAGC+TGG | 0.406170 | 8_1:-63312414 | Msa1206340:CDS |
| CCTTATAAGAGCCTACCTAT+TGG | 0.406403 | 8_1:-63311165 | Msa1206340:CDS |
| CCAAAAGGGATAGCTCCTTA+TGG | 0.407325 | 8_1:-63311279 | Msa1206340:CDS |
| CCTTAATATTGGTTGGAGTT+GGG | 0.411834 | 8_1:-63309716 | Msa1206340:CDS |
| ATAGCTCCTTATGGTGTTAG+AGG | 0.412926 | 8_1:-63311270 | Msa1206340:CDS |
| TGGTATGATCTTGTAGCTCT+TGG | 0.419437 | 8_1:-63312513 | Msa1206340:CDS |
| CCAGATTGATGAAGAGCAAC+AGG | 0.428383 | 8_1:+63312447 | None:intergenic |
| GCCGAGGAGATTGAGAATTT+GGG | 0.430127 | 8_1:-63308843 | Msa1206340:CDS |
| GATTAGCATTGGCACGCTAA+TGG | 0.433590 | 8_1:-63309276 | Msa1206340:CDS |
| TGGTGGGGCAAATATACTAA+TGG | 0.434674 | 8_1:-63312061 | Msa1206340:CDS |
| GGGCAAGGCTTGTTCCATCT+TGG | 0.436918 | 8_1:-63309597 | Msa1206340:CDS |
| TTTGGATTCATCGTTGTGGC+TGG | 0.438413 | 8_1:-63311336 | Msa1206340:CDS |
| TGACAATGTTGTCATGTTGT+TGG | 0.446760 | 8_1:+63312665 | None:intergenic |
| GAGAAAATAATCCCAATGTA+TGG | 0.450687 | 8_1:-63311975 | Msa1206340:CDS |
| AGGTGCAAGTTTAGGTATAG+TGG | 0.451944 | 8_1:-63309674 | Msa1206340:CDS |
| GAGCCTACCTATTGGAATAG+TGG | 0.452705 | 8_1:-63311157 | Msa1206340:CDS |
| ACTGAACCCACTATTCCAAT+AGG | 0.453533 | 8_1:+63311150 | None:intergenic |
| GCCAGATACCTTTGTGTCAT+GGG | 0.453690 | 8_1:-63309622 | Msa1206340:CDS |
| TGTTGTTGGTTGTTGTAATG+TGG | 0.458265 | 8_1:+63312679 | None:intergenic |
| TATGATGCAGGAGAATTCTT+GGG | 0.458515 | 8_1:-63312090 | Msa1206340:intron |
| GATCTTGTAGCTCTTGGAGT+TGG | 0.460545 | 8_1:-63312507 | Msa1206340:CDS |
| AGTTATTTAAGATTAACATT+TGG | 0.461337 | 8_1:-63312318 | Msa1206340:intron |
| AGTTGGGCAAGCAACATTGT+TGG | 0.465245 | 8_1:-63309700 | Msa1206340:CDS |
| ATAATTGAGTTGATTAGCAT+TGG | 0.467575 | 8_1:-63309287 | Msa1206340:CDS |
| TGGCTTTCCTTAATATTGGT+TGG | 0.469455 | 8_1:-63309723 | Msa1206340:CDS |
| CTTGGAGTTGGAGGAATGCT+TGG | 0.469596 | 8_1:-63312495 | Msa1206340:CDS |
| TGGTGGGGTCTCTTACTCTT+CGG | 0.470816 | 8_1:-63309110 | Msa1206340:CDS |
| CTTGTAGCTCTTGGAGTTGG+AGG | 0.471002 | 8_1:-63312504 | Msa1206340:CDS |
| GCCAAAGTACATCCTTCAAC+AGG | 0.471515 | 8_1:-63309571 | Msa1206340:CDS |
| GTATGGAGAGTGGAAGTTCA+TGG | 0.471951 | 8_1:-63311958 | Msa1206340:CDS |
| TGTAACCAACTTACAAACTA+AGG | 0.473407 | 8_1:-63308790 | Msa1206340:CDS |
| TGTACAAGGTTGTTGTTACA+AGG | 0.475149 | 8_1:+63309044 | None:intergenic |
| CCAAACTATGGAGAAGCATA+AGG | 0.477093 | 8_1:+63309148 | None:intergenic |
| TTCCACCTTAGTTTGTAAGT+TGG | 0.479933 | 8_1:+63308785 | None:intergenic |
| ATATGACTGACCTTATTGTA+AGG | 0.480341 | 8_1:+63311072 | None:intergenic |
| GGTCTGGTGCAGACATGAAA+AGG | 0.485575 | 8_1:-63312545 | Msa1206340:CDS |
| CACAAACTCCACACAGGCTT+AGG | 0.485903 | 8_1:-63312623 | Msa1206340:CDS |
| ACTTCCACTCTCCATACATT+GGG | 0.486802 | 8_1:+63311964 | None:intergenic |
| AAAATGTACATATATATTGT+GGG | 0.494757 | 8_1:-63308711 | Msa1206340:three_prime_UTR |
| CACGCTAATGGTGTTCTACA+TGG | 0.494994 | 8_1:-63309264 | Msa1206340:CDS |
| AACCAAGTGAGGCAGAGGTC+TGG | 0.496317 | 8_1:-63312561 | Msa1206340:CDS |
| TCTCAAATGCTGCTGTAGCT+AGG | 0.500116 | 8_1:-63312029 | Msa1206340:CDS |
| AGCCTACCTATTGGAATAGT+GGG | 0.500222 | 8_1:-63311156 | Msa1206340:CDS |
| GCCTGTTGAAGGATGTACTT+TGG | 0.501517 | 8_1:+63309570 | None:intergenic |
| GTTGGAGGAATGCTTGGTGT+TGG | 0.502228 | 8_1:-63312489 | Msa1206340:CDS |
| GGAAATTCAAACAGCAATGG+TGG | 0.509718 | 8_1:-63309127 | Msa1206340:CDS |
| GTGGAGTTTGTGAGAGTGAA+TGG | 0.509937 | 8_1:+63312634 | None:intergenic |
| AGAACACCTCTAACACCATA+AGG | 0.511059 | 8_1:+63311264 | None:intergenic |
| TGATATTCCAGCTATGATAT+AGG | 0.513325 | 8_1:+63312407 | None:intergenic |
| GAAGGTGGCCATGGCATGAA+TGG | 0.513555 | 8_1:+63308993 | None:intergenic |
| GCAAGCAACATTGTTGGAGC+AGG | 0.513760 | 8_1:-63309694 | Msa1206340:CDS |
| AGAGAAAGCATCATATTCAA+TGG | 0.515624 | 8_1:-63309743 | Msa1206340:CDS |
| AAGTGAGGGAGAGAAGAAAG+AGG | 0.516262 | 8_1:+63309171 | None:intergenic |
| AACTTCCACTCTCCATACAT+TGG | 0.516853 | 8_1:+63311963 | None:intergenic |
| AAAACTTGGTTAATCCAAAA+GGG | 0.521490 | 8_1:-63311293 | Msa1206340:CDS |
| GCCAAAGGATTATAACATGT+TGG | 0.521646 | 8_1:-63311932 | Msa1206340:CDS |
| ATTATGCTATATATCTTGTA+CGG | 0.522120 | 8_1:-63308650 | Msa1206340:three_prime_UTR |
| AACCATGGCTGAGGAGGTCA+AGG | 0.523071 | 8_1:-63311190 | Msa1206340:CDS |
| GAAATTCAAACAGCAATGGT+GGG | 0.526735 | 8_1:-63309126 | Msa1206340:CDS |
| AGAAGAATGAGAGCTACTGC+TGG | 0.527933 | 8_1:+63311904 | None:intergenic |
| ATGGACATTGAAGGTGGCCA+TGG | 0.537476 | 8_1:+63308984 | None:intergenic |
| AGCCAGATACCTTTGTGTCA+TGG | 0.541144 | 8_1:-63309623 | Msa1206340:CDS |
| GAGCATATTCTTGTTGTACA+AGG | 0.543125 | 8_1:+63309030 | None:intergenic |
| AGCTTCAACCATGGCTGAGG+AGG | 0.545111 | 8_1:-63311196 | Msa1206340:CDS |
| TGCACAAAGACAGAGCCATT+AGG | 0.546466 | 8_1:+63311103 | None:intergenic |
| GTGTGTGTAAAGGCGGTGTA+TGG | 0.548779 | 8_1:+63309201 | None:intergenic |
| AACAAGAATATGCTCAATGT+TGG | 0.550044 | 8_1:-63309022 | Msa1206340:CDS |
| ATCCTTGACCTCCTCAGCCA+TGG | 0.551869 | 8_1:+63311188 | None:intergenic |
| GATGATTGATTTCAGTACAA+AGG | 0.552981 | 8_1:-63311406 | Msa1206340:intron |
| TTCAGCTTCAACCATGGCTG+AGG | 0.555396 | 8_1:-63311199 | Msa1206340:CDS |
| TTCAATGGAGTGCCTGTTGA+AGG | 0.556143 | 8_1:+63309559 | None:intergenic |
| GGAGAAGCATAAGGAAGTGA+GGG | 0.556959 | 8_1:+63309157 | None:intergenic |
| GATACCTTTGTGTCATGGGA+AGG | 0.563239 | 8_1:-63309618 | Msa1206340:CDS |
| TTGAGGAAGATGGACATTGA+AGG | 0.567242 | 8_1:+63308975 | None:intergenic |
| ACCCAAATTCTCAATCTCCT+CGG | 0.568939 | 8_1:+63308842 | None:intergenic |
| TGGAGAAGCATAAGGAAGTG+AGG | 0.569100 | 8_1:+63309156 | None:intergenic |
| AATTCAACCAAGTGAGGCAG+AGG | 0.569150 | 8_1:-63312566 | Msa1206340:CDS |
| TTTGGAAATTCAAACAGCAA+TGG | 0.571143 | 8_1:-63309130 | Msa1206340:CDS |
| TGTACTTTGGCTAACCAAGA+TGG | 0.571883 | 8_1:+63309583 | None:intergenic |
| TACCGTCGCTATGTAATCAT+CGG | 0.577579 | 8_1:-63309224 | Msa1206340:CDS |
| ATGACCATATAGCAAAGCGT+TGG | 0.577715 | 8_1:+63308916 | None:intergenic |
| CTATGATTCAGCTTCAACCA+TGG | 0.580237 | 8_1:-63311205 | Msa1206340:CDS |
| ATACCTTTGTGTCATGGGAA+GGG | 0.590763 | 8_1:-63309617 | Msa1206340:CDS |
| TAATCCCAATGTATGGAGAG+TGG | 0.592516 | 8_1:-63311968 | Msa1206340:CDS |
| CATGGAACACTGTCATAATG+AGG | 0.594067 | 8_1:+63311367 | None:intergenic |
| GTTGTGGCTGGTTATTACAA+TGG | 0.594223 | 8_1:-63311324 | Msa1206340:CDS |
| GTTCAAGTTCCAGTTGCTGG+AGG | 0.596218 | 8_1:-63312348 | Msa1206340:CDS |
| GGAAAAGAATGCTAGCAACA+TGG | 0.601745 | 8_1:-63312602 | Msa1206340:CDS |
| TGTTACAAGGCACCATGTGT+TGG | 0.603576 | 8_1:+63309057 | None:intergenic |
| AGGAACAAAAGTGTGTGTAA+AGG | 0.603696 | 8_1:+63309191 | None:intergenic |
| GGAAGTTCATGGATTGCCAA+AGG | 0.604127 | 8_1:-63311947 | Msa1206340:CDS |
| TTTGGGTGGTGTTAATCAAG+TGG | 0.606482 | 8_1:-63308826 | Msa1206340:CDS |
| GGTATGTGCCATTCATGCCA+TGG | 0.610730 | 8_1:-63309001 | Msa1206340:CDS |
| TTTCTTTGGATTCATCGTTG+TGG | 0.629846 | 8_1:-63311340 | Msa1206340:CDS |
| TGGGGTCTCTTACTCTTCGG+TGG | 0.630179 | 8_1:-63309107 | Msa1206340:CDS |
| AACAAAAGTGTGTGTAAAGG+CGG | 0.630640 | 8_1:+63309194 | None:intergenic |
| ACCAAGAATTCAACCAAGTG+AGG | 0.631416 | 8_1:-63312572 | Msa1206340:CDS |
| ATATAGGAAATAAAGACTGA+AGG | 0.634540 | 8_1:+63312423 | None:intergenic |
| AAATTCAAACAGCAATGGTG+GGG | 0.636518 | 8_1:-63309125 | Msa1206340:CDS |
| AAATGTACATATATATTGTG+GGG | 0.640711 | 8_1:-63308710 | Msa1206340:three_prime_UTR |
| AACCAACTTACAAACTAAGG+TGG | 0.646197 | 8_1:-63308787 | Msa1206340:CDS |
| CACTCTCACAAACTCCACAC+AGG | 0.646429 | 8_1:-63312629 | Msa1206340:CDS |
| GAGGAGATTGAGAATTTGGG+TGG | 0.655023 | 8_1:-63308840 | Msa1206340:CDS |
| ACCATAAAGCACATAAAACA+TGG | 0.658020 | 8_1:+63308884 | None:intergenic |
| AGGAAGATGGACATTGAAGG+TGG | 0.658680 | 8_1:+63308978 | None:intergenic |
| TTTGTGTCATGGGAAGGGCA+AGG | 0.658768 | 8_1:-63309612 | Msa1206340:CDS |
| TTGCCCTTCCCATGACACAA+AGG | 0.659610 | 8_1:+63309614 | None:intergenic |
| GGCCGATGATTACATAGCGA+CGG | 0.666130 | 8_1:+63309222 | None:intergenic |
| TCACTCTACGTATCAAGCCG+AGG | 0.689681 | 8_1:-63308859 | Msa1206340:CDS |
| TGAATCCAAAGAAAATCACA+TGG | 0.692143 | 8_1:+63311349 | None:intergenic |
| TATGACACAAGCAAAGAGTG+AGG | 0.719524 | 8_1:+63311881 | None:intergenic |
| AACCCACTATTCCAATAGGT+AGG | 0.722428 | 8_1:+63311154 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTAAAACTATACTAATT+AGG | - | chr8_1:63309694-63309713 | Msa1206340:CDS | 10.0% |
| !! | ATATTCAAAATTGTAAATAA+TGG | + | chr8_1:63309833-63309852 | None:intergenic | 10.0% |
| !! | AAGAATGATAATTATTTATT+TGG | + | chr8_1:63309908-63309927 | None:intergenic | 10.0% |
| !!! | ATATTTTGTCAAAAAAAAAT+TGG | + | chr8_1:63310885-63310904 | None:intergenic | 10.0% |
| !!! | TTAAATTTTTTGATTAAATG+TGG | - | chr8_1:63311071-63311090 | Msa1206340:intron | 10.0% |
| !!! | ATTATTTTCCTTTTTTTTTT+TGG | + | chr8_1:63311170-63311189 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAGGAAAATAA+TGG | - | chr8_1:63311169-63311188 | Msa1206340:CDS | 10.0% |
| !! | AAAAAAAAAAGGAAAATAAT+GGG | - | chr8_1:63311170-63311189 | Msa1206340:CDS | 10.0% |
| !!! | TATAAAATTTAATGGATAAT+TGG | - | chr8_1:63311208-63311227 | Msa1206340:CDS | 10.0% |
| !!! | AAATTTTCAAAAATATTTGA+TGG | + | chr8_1:63311841-63311860 | None:intergenic | 10.0% |
| !!! | AGTTATTTAAGATTAACATT+TGG | - | chr8_1:63309023-63309042 | Msa1206340:CDS | 15.0% |
| !!! | ATTAGTATAGTTTTAAATTG+TGG | + | chr8_1:63309693-63309712 | None:intergenic | 15.0% |
| !!! | TACAATTTTGAATATTTAAC+TGG | - | chr8_1:63309838-63309857 | Msa1206340:intron | 15.0% |
| !! | TTTAATTCAAATACATTGTT+AGG | + | chr8_1:63310408-63310427 | None:intergenic | 15.0% |
| !! | TGAATGTATAATTACTAAAA+TGG | - | chr8_1:63310717-63310736 | Msa1206340:intron | 15.0% |
| !! | AAAAATGTACATATATATTG+TGG | - | chr8_1:63312629-63312648 | Msa1206340:CDS | 15.0% |
| !! | AAAATGTACATATATATTGT+GGG | - | chr8_1:63312630-63312649 | Msa1206340:CDS | 15.0% |
| !! | ATATCAAACTAAAAAACAGA+AGG | + | chr8_1:63309526-63309545 | None:intergenic | 20.0% |
| !!! | TTTAGTTTGATATTGTATCA+AGG | - | chr8_1:63309533-63309552 | Msa1206340:intron | 20.0% |
| !! | ACTATACTAATTAGGTTAAT+TGG | - | chr8_1:63309702-63309721 | Msa1206340:CDS | 20.0% |
| !! | CTATACTAATTAGGTTAATT+GGG | - | chr8_1:63309703-63309722 | Msa1206340:CDS | 20.0% |
| !! | TATACTAATTAGGTTAATTG+GGG | - | chr8_1:63309704-63309723 | Msa1206340:CDS | 20.0% |
| !!! | TTGGTGTTTTTTATAATGAA+AGG | - | chr8_1:63309790-63309809 | Msa1206340:intron | 20.0% |
| !!! | TGTTTTTTATAATGAAAGGA+TGG | - | chr8_1:63309794-63309813 | Msa1206340:intron | 20.0% |
| !! | ATAGTGTACTTTAGTTATAT+AGG | - | chr8_1:63310113-63310132 | Msa1206340:intron | 20.0% |
| !! | TATTTGAATTAAATACGTCT+AGG | - | chr8_1:63310415-63310434 | Msa1206340:intron | 20.0% |
| !!! | TATGTTAGTATTTTTCTTCA+GGG | + | chr8_1:63310448-63310467 | None:intergenic | 20.0% |
| !!! | TTATGTTAGTATTTTTCTTC+AGG | + | chr8_1:63310449-63310468 | None:intergenic | 20.0% |
| !! | TTATTAGTTGAACAATGAAT+TGG | - | chr8_1:63310506-63310525 | Msa1206340:intron | 20.0% |
| !! | TGAAAGAATTGATATATGTT+TGG | - | chr8_1:63310627-63310646 | Msa1206340:intron | 20.0% |
| !! | CATAGCTATATACAAATAAA+TGG | - | chr8_1:63310741-63310760 | Msa1206340:intron | 20.0% |
| !!! | GAACTGTATTTTTTCTTTTT+TGG | + | chr8_1:63310973-63310992 | None:intergenic | 20.0% |
| !! | TGTATAAAATATCCAAAACT+TGG | - | chr8_1:63311006-63311025 | Msa1206340:intron | 20.0% |
| !!! | TCTTGACCATAAATATTTTT+TGG | - | chr8_1:63311033-63311052 | Msa1206340:intron | 20.0% |
| !!! | CTTGACCATAAATATTTTTT+GGG | - | chr8_1:63311034-63311053 | Msa1206340:intron | 20.0% |
| !!! | TTGACCATAAATATTTTTTG+GGG | - | chr8_1:63311035-63311054 | Msa1206340:intron | 20.0% |
| !! | TTAAATACAAACCAAAATGA+AGG | - | chr8_1:63311103-63311122 | Msa1206340:CDS | 20.0% |
| !!! | AAGCTATATATTCTTTGAAA+TGG | - | chr8_1:63311563-63311582 | Msa1206340:intron | 20.0% |
| !! | TTAGTTAATTGTCTTATCTT+TGG | - | chr8_1:63311887-63311906 | Msa1206340:CDS | 20.0% |
| !! | TAGTTAATTGTCTTATCTTT+GGG | - | chr8_1:63311888-63311907 | Msa1206340:CDS | 20.0% |
| !! | AAATGTACATATATATTGTG+GGG | - | chr8_1:63312631-63312650 | Msa1206340:CDS | 20.0% |
| !! | ATTATGCTATATATCTTGTA+CGG | - | chr8_1:63312691-63312710 | Msa1206340:five_prime_UTR | 20.0% |
| ! | ACATGAAAAGGAAACTTAAT+TGG | - | chr8_1:63308808-63308827 | Msa1206340:CDS | 25.0% |
| ! | ATATAGGAAATAAAGACTGA+AGG | + | chr8_1:63308921-63308940 | None:intergenic | 25.0% |
| ! | TTTATTTCCTATATCATAGC+TGG | - | chr8_1:63308927-63308946 | Msa1206340:CDS | 25.0% |
| !!! | GAATATTTGAGTTTTGCTTT+TGG | - | chr8_1:63309344-63309363 | Msa1206340:intron | 25.0% |
| ! | CTTCAAAATCCTTTATATTG+CGG | - | chr8_1:63309660-63309679 | Msa1206340:CDS | 25.0% |
| !! | TTTTGGATTAACCAAGTTTT+TGG | + | chr8_1:63310048-63310067 | None:intergenic | 25.0% |
| ! | AAAAACTTGGTTAATCCAAA+AGG | - | chr8_1:63310047-63310066 | Msa1206340:intron | 25.0% |
| ! | AAAACTTGGTTAATCCAAAA+GGG | - | chr8_1:63310048-63310067 | Msa1206340:intron | 25.0% |
| ! | AACTTTACTTTATTGCCTAA+TGG | - | chr8_1:63310223-63310242 | Msa1206340:intron | 25.0% |
| ! | AATTCAAATACATTGTTAGG+CGG | + | chr8_1:63310405-63310424 | None:intergenic | 25.0% |
| ! | ATATAAATTACGTGTGTGTT+TGG | - | chr8_1:63310535-63310554 | Msa1206340:intron | 25.0% |
| ! | TAAAGAGAATGAATGTTGTT+TGG | - | chr8_1:63310671-63310690 | Msa1206340:intron | 25.0% |
| !! | AAGTTAAATAATAATGGAGC+TGG | - | chr8_1:63310944-63310963 | Msa1206340:intron | 25.0% |
| ! | TTAGCCCCAAAAAATATTTA+TGG | + | chr8_1:63311042-63311061 | None:intergenic | 25.0% |
| !!! | AATATTTTTTGGGGCTAATT+TGG | - | chr8_1:63311044-63311063 | Msa1206340:intron | 25.0% |
| !! | TTATCAATTCTCCTTCATTT+TGG | + | chr8_1:63311117-63311136 | None:intergenic | 25.0% |
| ! | AAATGAAGGAGAATTGATAA+AGG | - | chr8_1:63311117-63311136 | Msa1206340:CDS | 25.0% |
| ! | GAATTGATAAAGGACAATAA+AGG | - | chr8_1:63311127-63311146 | Msa1206340:CDS | 25.0% |
| ! | AGGACAATAAAGGAAAATAA+TGG | - | chr8_1:63311137-63311156 | Msa1206340:CDS | 25.0% |
| ! | GGACAATAAAGGAAAATAAT+GGG | - | chr8_1:63311138-63311157 | Msa1206340:CDS | 25.0% |
| !!! | AATTGCCTTTTTCAATTTTG+AGG | - | chr8_1:63311326-63311345 | Msa1206340:CDS | 25.0% |
| ! | AGTTAATTGTCTTATCTTTG+GGG | - | chr8_1:63311889-63311908 | Msa1206340:CDS | 25.0% |
| !!! | ATAATTGAGTTGATTAGCAT+TGG | - | chr8_1:63312054-63312073 | Msa1206340:CDS | 25.0% |
| !!! | TACATTTTTAGTGTCTATGT+AGG | + | chr8_1:63312618-63312637 | None:intergenic | 25.0% |
| !! | GTAGAATTGATGTTTTCTAA+AGG | - | chr8_1:63312653-63312672 | Msa1206340:CDS | 25.0% |
| !! | TATATATCTTGTACGGTTTT+GGG | - | chr8_1:63312698-63312717 | Msa1206340:five_prime_UTR | 25.0% |
| TGATATTCCAGCTATGATAT+AGG | + | chr8_1:63308937-63308956 | None:intergenic | 30.0% | |
| !!! | TCTTTTTTTGCTTATGATGC+AGG | - | chr8_1:63309239-63309258 | Msa1206340:CDS | 30.0% |
| !!! | AATTCTTGGGATATTTTGGT+GGG | - | chr8_1:63309264-63309283 | Msa1206340:CDS | 30.0% |
| GAGAAAATAATCCCAATGTA+TGG | - | chr8_1:63309366-63309385 | Msa1206340:intron | 30.0% | |
| TCCAACATGTTATAATCCTT+TGG | + | chr8_1:63309413-63309432 | None:intergenic | 30.0% | |
| TGCAAAATGCGAAAAAAATG+TGG | - | chr8_1:63309597-63309616 | Msa1206340:CDS | 30.0% | |
| AATATCCACCCAATGAAATA+AGG | + | chr8_1:63309732-63309751 | None:intergenic | 30.0% | |
| !! | GAATATTTAACTGGCTTTAG+TGG | - | chr8_1:63309847-63309866 | Msa1206340:intron | 30.0% |
| ! | GATGATTGATTTCAGTACAA+AGG | - | chr8_1:63309935-63309954 | Msa1206340:intron | 30.0% |
| TGTCATAATGAGGTTCAATA+TGG | + | chr8_1:63309967-63309986 | None:intergenic | 30.0% | |
| TGAATCCAAAGAAAATCACA+TGG | + | chr8_1:63309995-63310014 | None:intergenic | 30.0% | |
| ATATGACTGACCTTATTGTA+AGG | + | chr8_1:63310272-63310291 | None:intergenic | 30.0% | |
| GGTGTTCACCAAAAAAAAAA+AGG | - | chr8_1:63311159-63311178 | Msa1206340:CDS | 30.0% | |
| ! | TTCTAGTTAACTCAAAAGCT+AGG | - | chr8_1:63311231-63311250 | Msa1206340:CDS | 30.0% |
| ! | AAGGCAATTTTTCACATGTT+TGG | + | chr8_1:63311315-63311334 | None:intergenic | 30.0% |
| TAGAGCCTCAAAATTGAAAA+AGG | + | chr8_1:63311334-63311353 | None:intergenic | 30.0% | |
| TTAATTGCTTTACCTCTAGA+AGG | + | chr8_1:63311443-63311462 | None:intergenic | 30.0% | |
| !! | AGAGAAAGCATCATATTCAA+TGG | - | chr8_1:63311598-63311617 | Msa1206340:intron | 30.0% |
| TCAATGGCTTTCCTTAATAT+TGG | - | chr8_1:63311614-63311633 | Msa1206340:intron | 30.0% | |
| ! | AAAAAGATAGTGGCATTCAA+TGG | + | chr8_1:63311800-63311819 | None:intergenic | 30.0% |
| ! | ATTGAATGCCACTATCTTTT+TGG | - | chr8_1:63311799-63311818 | Msa1206340:intron | 30.0% |
| ! | TTGAATGCCACTATCTTTTT+GGG | - | chr8_1:63311800-63311819 | Msa1206340:intron | 30.0% |
| ATCAATTCATTTATTGACGC+AGG | - | chr8_1:63311988-63312007 | Msa1206340:CDS | 30.0% | |
| CTGTTTGAATTTCCAAACTA+TGG | + | chr8_1:63312208-63312227 | None:intergenic | 30.0% | |
| TTTGGAAATTCAAACAGCAA+TGG | - | chr8_1:63312211-63312230 | Msa1206340:intron | 30.0% | |
| AAAAACTGTGATTGTGATCA+TGG | + | chr8_1:63312262-63312281 | None:intergenic | 30.0% | |
| AACAAGAATATGCTCAATGT+TGG | - | chr8_1:63312319-63312338 | Msa1206340:CDS | 30.0% | |
| TAGTCATGAGAAAAACATTG+AGG | + | chr8_1:63312386-63312405 | None:intergenic | 30.0% | |
| ! | ACCATGTTTTATGTGCTTTA+TGG | - | chr8_1:63312456-63312475 | Msa1206340:CDS | 30.0% |
| ACCATAAAGCACATAAAACA+TGG | + | chr8_1:63312460-63312479 | None:intergenic | 30.0% | |
| AGTTGGTTACACTCAAATTT+GGG | + | chr8_1:63312542-63312561 | None:intergenic | 30.0% | |
| ! | AAGTTGGTTACACTCAAATT+TGG | + | chr8_1:63312543-63312562 | None:intergenic | 30.0% |
| TGTAACCAACTTACAAACTA+AGG | - | chr8_1:63312551-63312570 | Msa1206340:CDS | 30.0% | |
| ! | CTATATATCTTGTACGGTTT+TGG | - | chr8_1:63312697-63312716 | Msa1206340:five_prime_UTR | 30.0% |
| ! | TGTTGTTGGTTGTTGTAATG+TGG | + | chr8_1:63308665-63308684 | None:intergenic | 35.0% |
| TGACAATGTTGTCATGTTGT+TGG | + | chr8_1:63308679-63308698 | None:intergenic | 35.0% | |
| TTATGATGCAGGAGAATTCT+TGG | - | chr8_1:63309250-63309269 | Msa1206340:CDS | 35.0% | |
| TATGATGCAGGAGAATTCTT+GGG | - | chr8_1:63309251-63309270 | Msa1206340:CDS | 35.0% | |
| ! | GGAGAATTCTTGGGATATTT+TGG | - | chr8_1:63309260-63309279 | Msa1206340:CDS | 35.0% |
| !! | GAATTCTTGGGATATTTTGG+TGG | - | chr8_1:63309263-63309282 | Msa1206340:CDS | 35.0% |
| !!! | ATTCTTGGGATATTTTGGTG+GGG | - | chr8_1:63309265-63309284 | Msa1206340:CDS | 35.0% |
| GCCAAAGGATTATAACATGT+TGG | - | chr8_1:63309409-63309428 | Msa1206340:intron | 35.0% | |
| CGAAAAAAATGTGGTTGACA+TGG | - | chr8_1:63309606-63309625 | Msa1206340:CDS | 35.0% | |
| ! | ATTGGGGAACCTTATTTCAT+TGG | - | chr8_1:63309720-63309739 | Msa1206340:CDS | 35.0% |
| ! | TTGGGGAACCTTATTTCATT+GGG | - | chr8_1:63309721-63309740 | Msa1206340:CDS | 35.0% |
| ! | GTGTTCCATGTGATTTTCTT+TGG | - | chr8_1:63309987-63310006 | Msa1206340:intron | 35.0% |
| TTTCTTTGGATTCATCGTTG+TGG | - | chr8_1:63310001-63310020 | Msa1206340:intron | 35.0% | |
| !! | CAATGGAAGTACCAAAAACT+TGG | - | chr8_1:63310034-63310053 | Msa1206340:intron | 35.0% |
| CATGATGGTTCCTTACAATA+AGG | - | chr8_1:63310259-63310278 | Msa1206340:intron | 35.0% | |
| TAGAATAAGCTGAACCAAAC+AGG | - | chr8_1:63311370-63311389 | Msa1206340:CDS | 35.0% | |
| CTAGTTAGAATTCCTTCTAG+AGG | - | chr8_1:63311428-63311447 | Msa1206340:intron | 35.0% | |
| TGGCTTTCCTTAATATTGGT+TGG | - | chr8_1:63311618-63311637 | Msa1206340:intron | 35.0% | |
| ! | TCCTTAATATTGGTTGGAGT+TGG | - | chr8_1:63311624-63311643 | Msa1206340:intron | 35.0% |
| ! | CCTTAATATTGGTTGGAGTT+GGG | - | chr8_1:63311625-63311644 | Msa1206340:intron | 35.0% |
| ! | TCTCTTCTAGTTGCAATGTT+AGG | - | chr8_1:63311692-63311711 | Msa1206340:intron | 35.0% |
| TTGCTTACCCAAAAAGATAG+TGG | + | chr8_1:63311810-63311829 | None:intergenic | 35.0% | |
| TCAAGCTCTTATCATTAAGC+CGG | + | chr8_1:63311917-63311936 | None:intergenic | 35.0% | |
| ! | AACAAAAGTGTGTGTAAAGG+CGG | + | chr8_1:63312150-63312169 | None:intergenic | 35.0% |
| ! | AGGAACAAAAGTGTGTGTAA+AGG | + | chr8_1:63312153-63312172 | None:intergenic | 35.0% |
| GAAATTCAAACAGCAATGGT+GGG | - | chr8_1:63312215-63312234 | Msa1206340:intron | 35.0% | |
| AAATTCAAACAGCAATGGTG+GGG | - | chr8_1:63312216-63312235 | Msa1206340:intron | 35.0% | |
| !!! | CACAGTTTTTTTCCAACACA+TGG | - | chr8_1:63312272-63312291 | Msa1206340:intron | 35.0% |
| ! | TGTACAAGGTTGTTGTTACA+AGG | + | chr8_1:63312300-63312319 | None:intergenic | 35.0% |
| ! | GAGCATATTCTTGTTGTACA+AGG | + | chr8_1:63312314-63312333 | None:intergenic | 35.0% |
| GAGAAAAACATTGAGGAAGA+TGG | + | chr8_1:63312379-63312398 | None:intergenic | 35.0% | |
| !!! | TTGGAAAGAGAGTGTTTTGA+GGG | + | chr8_1:63312409-63312428 | None:intergenic | 35.0% |
| AACCAACTTACAAACTAAGG+TGG | - | chr8_1:63312554-63312573 | Msa1206340:CDS | 35.0% | |
| !! | TTCCACCTTAGTTTGTAAGT+TGG | + | chr8_1:63312559-63312578 | None:intergenic | 35.0% |
| ! | ATTCTTTTCCTAAGCCTGTG+TGG | + | chr8_1:63308729-63308748 | None:intergenic | 40.0% |
| GGAAAAGAATGCTAGCAACA+TGG | - | chr8_1:63308739-63308758 | Msa1206340:three_prime_UTR | 40.0% | |
| ACTTGGTTGAATTCTTGGTC+TGG | + | chr8_1:63308768-63308787 | None:intergenic | 40.0% | |
| ACCAAGAATTCAACCAAGTG+AGG | - | chr8_1:63308769-63308788 | Msa1206340:exon | 40.0% | |
| TGGTATGATCTTGTAGCTCT+TGG | - | chr8_1:63308828-63308847 | Msa1206340:CDS | 40.0% | |
| ! | GTTGGTGTGTTTGTTACTAC+TGG | - | chr8_1:63308870-63308889 | Msa1206340:CDS | 40.0% |
| TGGTGGGGCAAATATACTAA+TGG | - | chr8_1:63309280-63309299 | Msa1206340:CDS | 40.0% | |
| TAATCCCAATGTATGGAGAG+TGG | - | chr8_1:63309373-63309392 | Msa1206340:intron | 40.0% | |
| ACTTCCACTCTCCATACATT+GGG | + | chr8_1:63309380-63309399 | None:intergenic | 40.0% | |
| AACTTCCACTCTCCATACAT+TGG | + | chr8_1:63309381-63309400 | None:intergenic | 40.0% | |
| TATGACACAAGCAAAGAGTG+AGG | + | chr8_1:63309463-63309482 | None:intergenic | 40.0% | |
| TCACTCTTTGCTTGTGTCAT+AGG | - | chr8_1:63309462-63309481 | Msa1206340:intron | 40.0% | |
| !!! | GGATTTTGAAGTCTCTGCAA+CGG | + | chr8_1:63309651-63309670 | None:intergenic | 40.0% |
| TGTGACAGCTAACACAAACT+TGG | - | chr8_1:63309771-63309790 | Msa1206340:intron | 40.0% | |
| CATGGAACACTGTCATAATG+AGG | + | chr8_1:63309977-63309996 | None:intergenic | 40.0% | |
| ! | GTTGTGGCTGGTTATTACAA+TGG | - | chr8_1:63310017-63310036 | Msa1206340:intron | 40.0% |
| ! | ATAGCTCCTTATGGTGTTAG+AGG | - | chr8_1:63310071-63310090 | Msa1206340:intron | 40.0% |
| AGAACACCTCTAACACCATA+AGG | + | chr8_1:63310080-63310099 | None:intergenic | 40.0% | |
| CTATGATTCAGCTTCAACCA+TGG | - | chr8_1:63310136-63310155 | Msa1206340:intron | 40.0% | |
| CCAATAGGTAGGCTCTTATA+AGG | + | chr8_1:63310179-63310198 | None:intergenic | 40.0% | |
| CCTTATAAGAGCCTACCTAT+TGG | - | chr8_1:63310176-63310195 | Msa1206340:intron | 40.0% | |
| AGCCTACCTATTGGAATAGT+GGG | - | chr8_1:63310185-63310204 | Msa1206340:intron | 40.0% | |
| AACCCACTATTCCAATAGGT+AGG | + | chr8_1:63310190-63310209 | None:intergenic | 40.0% | |
| ACTGAACCCACTATTCCAAT+AGG | + | chr8_1:63310194-63310213 | None:intergenic | 40.0% | |
| ! | GGTCAAGAGTTACCAAGTTT+TGG | + | chr8_1:63311021-63311040 | None:intergenic | 40.0% |
| CTCTTCTGCAAAAGCTATTC+TGG | + | chr8_1:63311271-63311290 | None:intergenic | 40.0% | |
| ! | ATTCTAGTTACGAGCCTGTT+TGG | + | chr8_1:63311387-63311406 | None:intergenic | 40.0% |
| CCCAACTCCAACCAATATTA+AGG | + | chr8_1:63311628-63311647 | None:intergenic | 40.0% | |
| AGGTGCAAGTTTAGGTATAG+TGG | - | chr8_1:63311667-63311686 | Msa1206340:intron | 40.0% | |
| ATACCTTTGTGTCATGGGAA+GGG | - | chr8_1:63311724-63311743 | Msa1206340:intron | 40.0% | |
| TGTACTTTGGCTAACCAAGA+TGG | + | chr8_1:63311761-63311780 | None:intergenic | 40.0% | |
| !! | TTGTCTTATCTTTGGGGTTC+CGG | - | chr8_1:63311895-63311914 | Msa1206340:CDS | 40.0% |
| TACCGTCGCTATGTAATCAT+CGG | - | chr8_1:63312117-63312136 | Msa1206340:intron | 40.0% | |
| ! | CCAAACTATGGAGAAGCATA+AGG | + | chr8_1:63312196-63312215 | None:intergenic | 40.0% |
| CCTTATGCTTCTCCATAGTT+TGG | - | chr8_1:63312193-63312212 | Msa1206340:intron | 40.0% | |
| GGAAATTCAAACAGCAATGG+TGG | - | chr8_1:63312214-63312233 | Msa1206340:intron | 40.0% | |
| TTGAGGAAGATGGACATTGA+AGG | + | chr8_1:63312369-63312388 | None:intergenic | 40.0% | |
| !!! | GTTGGAAAGAGAGTGTTTTG+AGG | + | chr8_1:63312410-63312429 | None:intergenic | 40.0% |
| ! | CTTTCCAACGCTTTGCTATA+TGG | - | chr8_1:63312421-63312440 | Msa1206340:CDS | 40.0% |
| ATGACCATATAGCAAAGCGT+TGG | + | chr8_1:63312428-63312447 | None:intergenic | 40.0% | |
| ACCCAAATTCTCAATCTCCT+CGG | + | chr8_1:63312502-63312521 | None:intergenic | 40.0% | |
| ! | TTTGGGTGGTGTTAATCAAG+TGG | - | chr8_1:63312515-63312534 | Msa1206340:CDS | 40.0% |
| CTTCAGCTAACTAACGCATT+TGG | + | chr8_1:63312584-63312603 | None:intergenic | 40.0% | |
| GTGGAGTTTGTGAGAGTGAA+TGG | + | chr8_1:63308710-63308729 | None:intergenic | 45.0% | |
| GCCTCACTTGGTTGAATTCT+TGG | + | chr8_1:63308773-63308792 | None:intergenic | 45.0% | |
| AATTCAACCAAGTGAGGCAG+AGG | - | chr8_1:63308775-63308794 | Msa1206340:CDS | 45.0% | |
| GATCTTGTAGCTCTTGGAGT+TGG | - | chr8_1:63308834-63308853 | Msa1206340:CDS | 45.0% | |
| CCAGATTGATGAAGAGCAAC+AGG | + | chr8_1:63308897-63308916 | None:intergenic | 45.0% | |
| CCTGTTGCTCTTCATCAATC+TGG | - | chr8_1:63308894-63308913 | Msa1206340:CDS | 45.0% | |
| AAAGACGTGTCCAACACGTT+TGG | - | chr8_1:63309104-63309123 | Msa1206340:CDS | 45.0% | |
| AAGACGTGTCCAACACGTTT+GGG | - | chr8_1:63309105-63309124 | Msa1206340:CDS | 45.0% | |
| TCTCAAATGCTGCTGTAGCT+AGG | - | chr8_1:63309312-63309331 | Msa1206340:CDS | 45.0% | |
| GTATGGAGAGTGGAAGTTCA+TGG | - | chr8_1:63309383-63309402 | Msa1206340:intron | 45.0% | |
| ! | GGAAGTTCATGGATTGCCAA+AGG | - | chr8_1:63309394-63309413 | Msa1206340:intron | 45.0% |
| AGAAGAATGAGAGCTACTGC+TGG | + | chr8_1:63309440-63309459 | None:intergenic | 45.0% | |
| GGTCTGCAACCGCAATATAA+AGG | + | chr8_1:63309672-63309691 | None:intergenic | 45.0% | |
| ! | GGGAACCTTATTTCATTGGG+TGG | - | chr8_1:63309724-63309743 | Msa1206340:CDS | 45.0% |
| TTTGGATTCATCGTTGTGGC+TGG | - | chr8_1:63310005-63310024 | Msa1206340:intron | 45.0% | |
| ! | CCATAAGGAGCTATCCCTTT+TGG | + | chr8_1:63310065-63310084 | None:intergenic | 45.0% |
| CCAAAAGGGATAGCTCCTTA+TGG | - | chr8_1:63310062-63310081 | Msa1206340:intron | 45.0% | |
| !! | GGTGTTAGAGGTGTTCTTGA+TGG | - | chr8_1:63310083-63310102 | Msa1206340:intron | 45.0% |
| GAGCCTACCTATTGGAATAG+TGG | - | chr8_1:63310184-63310203 | Msa1206340:intron | 45.0% | |
| TGCACAAAGACAGAGCCATT+AGG | + | chr8_1:63310241-63310260 | None:intergenic | 45.0% | |
| ! | GTGTGTGTTTGGTTCAGCTT+TGG | - | chr8_1:63310546-63310565 | Msa1206340:intron | 45.0% |
| AGTTGGGCAAGCAACATTGT+TGG | - | chr8_1:63311641-63311660 | Msa1206340:intron | 45.0% | |
| AGCCAGATACCTTTGTGTCA+TGG | - | chr8_1:63311718-63311737 | Msa1206340:intron | 45.0% | |
| GCCAGATACCTTTGTGTCAT+GGG | - | chr8_1:63311719-63311738 | Msa1206340:intron | 45.0% | |
| !! | TCCCATGACACAAAGGTATC+TGG | + | chr8_1:63311723-63311742 | None:intergenic | 45.0% |
| GATACCTTTGTGTCATGGGA+AGG | - | chr8_1:63311723-63311742 | Msa1206340:intron | 45.0% | |
| GCCAAAGTACATCCTTCAAC+AGG | - | chr8_1:63311770-63311789 | Msa1206340:intron | 45.0% | |
| GCCTGTTGAAGGATGTACTT+TGG | + | chr8_1:63311774-63311793 | None:intergenic | 45.0% | |
| ! | TTCAATGGAGTGCCTGTTGA+AGG | + | chr8_1:63311785-63311804 | None:intergenic | 45.0% |
| !! | GATTAGCATTGGCACGCTAA+TGG | - | chr8_1:63312065-63312084 | Msa1206340:CDS | 45.0% |
| CACGCTAATGGTGTTCTACA+TGG | - | chr8_1:63312077-63312096 | Msa1206340:CDS | 45.0% | |
| AAGTGAGGGAGAGAAGAAAG+AGG | + | chr8_1:63312173-63312192 | None:intergenic | 45.0% | |
| ! | GGAGAAGCATAAGGAAGTGA+GGG | + | chr8_1:63312187-63312206 | None:intergenic | 45.0% |
| ! | TGGAGAAGCATAAGGAAGTG+AGG | + | chr8_1:63312188-63312207 | None:intergenic | 45.0% |
| ! | TGTTACAAGGCACCATGTGT+TGG | + | chr8_1:63312287-63312306 | None:intergenic | 45.0% |
| AGGAAGATGGACATTGAAGG+TGG | + | chr8_1:63312366-63312385 | None:intergenic | 45.0% | |
| AGCCGAGGAGATTGAGAATT+TGG | - | chr8_1:63312497-63312516 | Msa1206340:CDS | 45.0% | |
| GCCGAGGAGATTGAGAATTT+GGG | - | chr8_1:63312498-63312517 | Msa1206340:CDS | 45.0% | |
| GAGGAGATTGAGAATTTGGG+TGG | - | chr8_1:63312501-63312520 | Msa1206340:CDS | 45.0% | |
| !!! | ATATTTAAGTTAAATAATAA+TGG | - | chr8_1:63310938-63310957 | Msa1206340:intron | 5.0% |
| !! | AATCAAAATATAAAATTTAA+TGG | - | chr8_1:63311200-63311219 | Msa1206340:CDS | 5.0% |
| CACTCTCACAAACTCCACAC+AGG | - | chr8_1:63308712-63308731 | Msa1206340:three_prime_UTR | 50.0% | |
| CACAAACTCCACACAGGCTT+AGG | - | chr8_1:63308718-63308737 | Msa1206340:three_prime_UTR | 50.0% | |
| GGTCTGGTGCAGACATGAAA+AGG | - | chr8_1:63308796-63308815 | Msa1206340:CDS | 50.0% | |
| CTTGTAGCTCTTGGAGTTGG+AGG | - | chr8_1:63308837-63308856 | Msa1206340:CDS | 50.0% | |
| CTTGGAGTTGGAGGAATGCT+TGG | - | chr8_1:63308846-63308865 | Msa1206340:CDS | 50.0% | |
| !! | GTTGGAGGAATGCTTGGTGT+TGG | - | chr8_1:63308852-63308871 | Msa1206340:CDS | 50.0% |
| ! | GCAGTTCAAGTTCCAGTTGC+TGG | - | chr8_1:63308990-63309009 | Msa1206340:CDS | 50.0% |
| ! | GTTCAAGTTCCAGTTGCTGG+AGG | - | chr8_1:63308993-63309012 | Msa1206340:CDS | 50.0% |
| ! | GTGTCCAACACGTTTGGGTT+TGG | - | chr8_1:63309110-63309129 | Msa1206340:CDS | 50.0% |
| CTGTCCAAACCCAAACGTGT+TGG | + | chr8_1:63309117-63309136 | None:intergenic | 50.0% | |
| TTCAGCTTCAACCATGGCTG+AGG | - | chr8_1:63310142-63310161 | Msa1206340:intron | 50.0% | |
| GGCTCTGTCTTTGTGCATGA+TGG | - | chr8_1:63310244-63310263 | Msa1206340:intron | 50.0% | |
| GCAAGCAACATTGTTGGAGC+AGG | - | chr8_1:63311647-63311666 | Msa1206340:intron | 50.0% | |
| GTTGGAGCAGGTGCAAGTTT+AGG | - | chr8_1:63311659-63311678 | Msa1206340:intron | 50.0% | |
| TTGCCCTTCCCATGACACAA+AGG | + | chr8_1:63311730-63311749 | None:intergenic | 50.0% | |
| TTTGTGTCATGGGAAGGGCA+AGG | - | chr8_1:63311729-63311748 | Msa1206340:intron | 50.0% | |
| GGCCGATGATTACATAGCGA+CGG | + | chr8_1:63312122-63312141 | None:intergenic | 50.0% | |
| GTGTGTGTAAAGGCGGTGTA+TGG | + | chr8_1:63312143-63312162 | None:intergenic | 50.0% | |
| TGGTGGGGTCTCTTACTCTT+CGG | - | chr8_1:63312231-63312250 | Msa1206340:intron | 50.0% | |
| ! | GGTATGTGCCATTCATGCCA+TGG | - | chr8_1:63312340-63312359 | Msa1206340:CDS | 50.0% |
| ATGGACATTGAAGGTGGCCA+TGG | + | chr8_1:63312360-63312379 | None:intergenic | 50.0% | |
| TCACTCTACGTATCAAGCCG+AGG | - | chr8_1:63312482-63312501 | Msa1206340:CDS | 50.0% | |
| AACCAAGTGAGGCAGAGGTC+TGG | - | chr8_1:63308780-63308799 | Msa1206340:CDS | 55.0% | |
| CTGAAAGCTCCTCCAGCAAC+TGG | + | chr8_1:63309005-63309024 | None:intergenic | 55.0% | |
| AGCTTCAACCATGGCTGAGG+AGG | - | chr8_1:63310145-63310164 | Msa1206340:intron | 55.0% | |
| AACCATGGCTGAGGAGGTCA+AGG | - | chr8_1:63310151-63310170 | Msa1206340:intron | 55.0% | |
| ATCCTTGACCTCCTCAGCCA+TGG | + | chr8_1:63310156-63310175 | None:intergenic | 55.0% | |
| ! | GGGCAAGGCTTGTTCCATCT+TGG | - | chr8_1:63311744-63311763 | Msa1206340:intron | 55.0% |
| TGGGGTCTCTTACTCTTCGG+TGG | - | chr8_1:63312234-63312253 | Msa1206340:intron | 55.0% | |
| GAAGGTGGCCATGGCATGAA+TGG | + | chr8_1:63312351-63312370 | None:intergenic | 55.0% | |
| CACCAGACCTCTGCCTCACT+TGG | + | chr8_1:63308785-63308804 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 63308618 | 63312745 | 63308618 | ID=Msa1206340;Name=Msa1206340 |
| chr8_1 | mRNA | 63308618 | 63312745 | 63308618 | ID=Msa1206340-mRNA-1;Parent=Msa1206340;Name=Msa1206340-mRNA-1;_AED=0.17;_eAED=0.17;_QI=66|1|1|1|1|1|5|152|575 |
| chr8_1 | exon | 63308618 | 63309353 | 63308618 | ID=Msa1206340-mRNA-1:exon:20572;Parent=Msa1206340-mRNA-1 |
| chr8_1 | exon | 63309542 | 63309770 | 63309542 | ID=Msa1206340-mRNA-1:exon:20571;Parent=Msa1206340-mRNA-1 |
| chr8_1 | exon | 63311083 | 63311413 | 63311083 | ID=Msa1206340-mRNA-1:exon:20570;Parent=Msa1206340-mRNA-1 |
| chr8_1 | exon | 63311880 | 63312102 | 63311880 | ID=Msa1206340-mRNA-1:exon:20569;Parent=Msa1206340-mRNA-1 |
| chr8_1 | exon | 63312319 | 63312745 | 63312319 | ID=Msa1206340-mRNA-1:exon:20568;Parent=Msa1206340-mRNA-1 |
| chr8_1 | five_prime_UTR | 63312680 | 63312745 | 63312680 | ID=Msa1206340-mRNA-1:five_prime_utr;Parent=Msa1206340-mRNA-1 |
| chr8_1 | CDS | 63312319 | 63312679 | 63312319 | ID=Msa1206340-mRNA-1:cds;Parent=Msa1206340-mRNA-1 |
| chr8_1 | CDS | 63311880 | 63312102 | 63311880 | ID=Msa1206340-mRNA-1:cds;Parent=Msa1206340-mRNA-1 |
| chr8_1 | CDS | 63311083 | 63311413 | 63311083 | ID=Msa1206340-mRNA-1:cds;Parent=Msa1206340-mRNA-1 |
| chr8_1 | CDS | 63309542 | 63309770 | 63309542 | ID=Msa1206340-mRNA-1:cds;Parent=Msa1206340-mRNA-1 |
| chr8_1 | CDS | 63308770 | 63309353 | 63308770 | ID=Msa1206340-mRNA-1:cds;Parent=Msa1206340-mRNA-1 |
| chr8_1 | three_prime_UTR | 63308618 | 63308769 | 63308618 | ID=Msa1206340-mRNA-1:three_prime_utr;Parent=Msa1206340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
