AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0223040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0223040 MtrunA17_Chr2g0327991 94.910 609 26 2 1 609 223 826 0.0 1171
Msa0223040 MtrunA17_Chr7g0262841 36.204 569 334 8 55 607 8 563 5.66e-122 373
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0223040 AT2G28780.1 44.895 617 316 10 1 609 182 782 2.60e-164 489
Msa0223040 AT3G09450.1 35.131 612 352 12 1 592 181 767 5.59e-98 316

Find 126 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGAAGGTAACGACGATAAA+TGG 0.138404 2_1:-72512559 Msa0223040:CDS
GGCACATGTTGAAGCCCTTT+TGG 0.213590 2_1:+72512064 None:intergenic
GTGTGTTTAGACCATGTTTA+AGG 0.223189 2_1:+72512834 None:intergenic
GAGGATGGCACATGGCTTTC+GGG 0.231680 2_1:-72511573 Msa0223040:CDS
ACATTGGGAGAGTTCATATT+TGG 0.246253 2_1:+72512043 None:intergenic
AGTTTCGATGATTCTTTCTA+TGG 0.249865 2_1:+72512133 None:intergenic
GGCTGGGCTTGGACATTTGT+TGG 0.261014 2_1:+72512605 None:intergenic
TTCATAGTGGTTGCTATAAT+AGG 0.277095 2_1:-72511863 Msa0223040:CDS
GTGGCATTTCGGCTGTGATT+GGG 0.280433 2_1:-72512205 Msa0223040:CDS
ATAGCAAAGAAAGTGGTTTC+TGG 0.285067 2_1:-72512442 Msa0223040:CDS
GGTGGCATTTCGGCTGTGAT+TGG 0.293729 2_1:-72512206 Msa0223040:CDS
GCTGGGCTTGGACATTTGTT+GGG 0.301251 2_1:+72512606 None:intergenic
TGGGCCTGCGGGTGGCATTT+CGG 0.304664 2_1:-72512216 Msa0223040:CDS
AGAGGATGGCACATGGCTTT+CGG 0.308325 2_1:-72511574 Msa0223040:CDS
AATCTCTCGTGTTAAGTCTT+TGG 0.311321 2_1:-72513348 Msa0223040:CDS
ATAAAATACTCTTTCGCATT+GGG 0.333551 2_1:-72512491 Msa0223040:CDS
AATTTCTTCAAGACCTTTGA+TGG 0.337569 2_1:+72511680 None:intergenic
TCCACACTTGTTGAATCAAT+TGG 0.347555 2_1:-72512017 Msa0223040:CDS
GAAGGAGTTTGGCACAAAAT+AGG 0.348823 2_1:+72512651 None:intergenic
TGAAAAGGTTGAATTTATAT+AGG 0.354634 2_1:-72511226 Msa0223040:three_prime_UTR
CAAACCACATTACAATAACT+TGG 0.357484 2_1:-72512951 Msa0223040:CDS
TTAGACCATGTTTAAGGTCT+TGG 0.362507 2_1:+72512840 None:intergenic
AAAGAAAGTGGTTTCTGGTC+TGG 0.364944 2_1:-72512437 Msa0223040:CDS
TTGGACATTTGTTGGGCCTT+CGG 0.367951 2_1:+72512613 None:intergenic
GTTGATTGGGAATGATTTGT+AGG 0.373147 2_1:+72512871 None:intergenic
TAGCAAAACTGATTCACAAT+TGG 0.376735 2_1:-72511979 Msa0223040:CDS
CATGTCTAGTGATGTTGAAA+TGG 0.381897 2_1:-72511607 Msa0223040:CDS
ATTGGGCCTATCAGTCTTCA+TGG 0.382307 2_1:-72512474 Msa0223040:CDS
CAATCTAATAGGAATGGAAT+TGG 0.385293 2_1:-72512903 Msa0223040:CDS
TCCTTGGGCTTTAACATTTG+CGG 0.386987 2_1:+72512364 None:intergenic
CAATTCCATTCCTATTAGAT+TGG 0.387246 2_1:+72512904 None:intergenic
TGATTTCATGTGAAGGAGTT+TGG 0.391065 2_1:+72512640 None:intergenic
ACGACGATAAATGGGCCAAT+TGG 0.392321 2_1:-72512550 Msa0223040:CDS
AAGAAAGTGGTTTCTGGTCT+GGG 0.393614 2_1:-72512436 Msa0223040:CDS
CTTTCTATGGCGAACTCGCT+TGG 0.406770 2_1:+72512146 None:intergenic
AAACTTGAATGATTTCATCT+TGG 0.407025 2_1:+72511656 None:intergenic
CTTCAACGAAGCCGTATGTA+TGG 0.407950 2_1:-72512236 Msa0223040:CDS
GAGGTAGATACCAATCTAAT+AGG 0.411762 2_1:-72512914 Msa0223040:CDS
CTTTCGGGTTTGAGAGAAGA+TGG 0.412711 2_1:-72511558 Msa0223040:CDS
GGAAAGAAGCTTGGTTCGTT+TGG 0.414887 2_1:+72513322 None:intergenic
AGGCTCATTATCAAAGTTAG+TGG 0.415380 2_1:-72511835 Msa0223040:CDS
CGAAGGTAACGACGATAAAT+GGG 0.421581 2_1:-72512558 Msa0223040:CDS
AAAGCCCAAGGAACGGTGAT+TGG 0.424570 2_1:-72512353 Msa0223040:CDS
CGACGATAAATGGGCCAATT+GGG 0.426579 2_1:-72512549 Msa0223040:CDS
CAGTTCCAATCACCGTTCCT+TGG 0.432211 2_1:+72512348 None:intergenic
TAATGAGCTTAGAAAATTTG+TGG 0.433373 2_1:-72511925 Msa0223040:CDS
GTGGCCGTAAGCTATGTTTC+AGG 0.434352 2_1:-72512407 Msa0223040:CDS
GGTAATTCTTGGTGAGTTGT+TGG 0.437818 2_1:+72512686 None:intergenic
AGTTCCAATCACCGTTCCTT+GGG 0.438721 2_1:+72512349 None:intergenic
GATTCTTGTCACTACTTCCA+TGG 0.446613 2_1:-72512277 Msa0223040:CDS
AATGCTAAACACTCTTTCCT+TGG 0.451588 2_1:-72512782 Msa0223040:CDS
AGAAAATCAAAGAAAACTTA+AGG 0.461877 2_1:-72511955 Msa0223040:CDS
AGCAAAACTGATTCACAATT+GGG 0.462198 2_1:-72511978 Msa0223040:CDS
TTATAGCAACCACTATGAAA+TGG 0.463626 2_1:+72511867 None:intergenic
AAACACTCTTTCCTTGGTGG+TGG 0.466264 2_1:-72512776 Msa0223040:CDS
TGAATAGGATGGCATGAGGT+GGG 0.468367 2_1:-72512996 Msa0223040:intron
TCTTGGTCAAGAATGTTGAT+TGG 0.470206 2_1:+72512857 None:intergenic
CTTGGTCAAGAATGTTGATT+GGG 0.470663 2_1:+72512858 None:intergenic
CAATGAGGGAACTTGTTCAA+TGG 0.474839 2_1:-72511368 Msa0223040:CDS
ATAAGCCCATGAAGACTGAT+AGG 0.475203 2_1:+72512468 None:intergenic
GGAACTGTGTACGGTGTGTT+GGG 0.476790 2_1:-72512332 Msa0223040:CDS
CATACATACGGCTTCGTTGA+AGG 0.483582 2_1:+72512237 None:intergenic
CACCCGCAGGCCCATACATA+CGG 0.486745 2_1:+72512225 None:intergenic
AATGAGGGAACTTGTTCAAT+GGG 0.487246 2_1:-72511367 Msa0223040:CDS
GTATAGTGATGAAGGTGAGA+AGG 0.487410 2_1:-72511478 Msa0223040:CDS
TGGAACTGTGTACGGTGTGT+TGG 0.488951 2_1:-72512333 Msa0223040:CDS
CACAAATTAAATACTGCTAG+AGG 0.490332 2_1:+72511338 None:intergenic
GAGACTGAAGCTTCTTGTAA+AGG 0.496265 2_1:-72513408 Msa0223040:CDS
CAACAAGTGTGGACAAACAT+TGG 0.496700 2_1:+72512027 None:intergenic
AACAAGTGTGGACAAACATT+GGG 0.497246 2_1:+72512028 None:intergenic
GATAAAATACTCTTTCGCAT+TGG 0.499234 2_1:-72512492 Msa0223040:CDS
GCTTAGAAAATTTGTGGTAG+AGG 0.499718 2_1:-72511919 Msa0223040:CDS
CTATGGCGAACTCGCTTGGT+GGG 0.507072 2_1:+72512150 None:intergenic
TGGCATTTCGGCTGTGATTG+GGG 0.516872 2_1:-72512204 Msa0223040:CDS
TCTATGGCGAACTCGCTTGG+TGG 0.517047 2_1:+72512149 None:intergenic
ATGTCTAGTGATGTTGAAAT+GGG 0.517771 2_1:-72511606 Msa0223040:CDS
TCTCCCAAGTTATTGTAATG+TGG 0.521521 2_1:+72512947 None:intergenic
GCTAAACACTCTTTCCTTGG+TGG 0.523877 2_1:-72512779 Msa0223040:CDS
AAACCACATTACAATAACTT+GGG 0.524370 2_1:-72512950 Msa0223040:CDS
AGCCGTATGTATGGGCCTGC+GGG 0.529646 2_1:-72512227 Msa0223040:CDS
TGAGACAATAGAGATTGAAA+AGG 0.533503 2_1:-72511391 Msa0223040:CDS
GAGGAAAATACTTCTGCACT+TGG 0.539006 2_1:-72513374 Msa0223040:CDS
ATCATGTGCTCTTCCATCAA+AGG 0.540330 2_1:-72511693 Msa0223040:CDS
TTGGGCCTATCAGTCTTCAT+GGG 0.541653 2_1:-72512473 Msa0223040:CDS
AAGTGAACTTCTACATGCTA+AGG 0.543626 2_1:-72511718 Msa0223040:CDS
AGATACCAATCTAATAGGAA+TGG 0.545673 2_1:-72512909 Msa0223040:CDS
CGGTTGATGATTTCATGTGA+AGG 0.549694 2_1:+72512633 None:intergenic
AGAGATTGAAAAGGCAATGA+GGG 0.552190 2_1:-72511382 Msa0223040:CDS
TAGTGATGAAGGTGAGAAGG+AGG 0.554892 2_1:-72511475 Msa0223040:CDS
GAAAAGCTCAAATCTTCTCC+CGG 0.557561 2_1:-72512516 Msa0223040:CDS
CATGATGGTGGAAAGAAGCT+TGG 0.559300 2_1:+72513313 None:intergenic
TCCAATTGATTCAACAAGTG+TGG 0.561122 2_1:+72512016 None:intergenic
GAGAAGTTGTATAGTGATGA+AGG 0.561390 2_1:-72511486 Msa0223040:CDS
CGTATGTATGGGCCTGCGGG+TGG 0.561768 2_1:-72512224 Msa0223040:CDS
TTCTTGGTGAGTTGTTGGAA+TGG 0.566246 2_1:+72512691 None:intergenic
AGGATGGCATGAGGTGGGAG+AGG 0.567122 2_1:-72512991 Msa0223040:CDS
TTCAACGAAGCCGTATGTAT+GGG 0.573243 2_1:-72512235 Msa0223040:CDS
ACAGCCGAAATGCCACCCGC+AGG 0.576761 2_1:+72512212 None:intergenic
GAGTTGTTGGAATGGTATGA+AGG 0.577072 2_1:+72512699 None:intergenic
TTGAATAGGATGGCATGAGG+TGG 0.577572 2_1:-72512997 Msa0223040:intron
TGTAAAGGTAATTAGTGAGG+AGG 0.580554 2_1:-72513393 Msa0223040:CDS
GCCGCAAATGTTAAAGCCCA+AGG 0.580581 2_1:-72512365 Msa0223040:CDS
GAAACATAGCTTACGGCCAC+GGG 0.584089 2_1:+72512410 None:intergenic
TCTACCTGAAACATAGCTTA+CGG 0.586470 2_1:+72512403 None:intergenic
AAGCCGTATGTATGGGCCTG+CGG 0.590070 2_1:-72512228 Msa0223040:CDS
TACAAGGTAGCGCATGATGG+TGG 0.593997 2_1:+72513301 None:intergenic
CTTGACCAAGACCTTAAACA+TGG 0.594831 2_1:-72512845 Msa0223040:CDS
ATGGGAAAGTCAAGAGAGGA+TGG 0.595992 2_1:-72511588 Msa0223040:CDS
TTTCTGGTCTGGGCTTCCCG+TGG 0.596132 2_1:-72512426 Msa0223040:CDS
TAGAGATTGAAAAGGCAATG+AGG 0.600885 2_1:-72511383 Msa0223040:CDS
TGAAACATAGCTTACGGCCA+CGG 0.608815 2_1:+72512409 None:intergenic
ACGGTGATTGGAACTGTGTA+CGG 0.612228 2_1:-72512341 Msa0223040:CDS
TTATTGTATAGCAAAGAAAG+TGG 0.612494 2_1:-72512449 Msa0223040:CDS
ACAAATTAAATACTGCTAGA+GGG 0.619285 2_1:+72511339 None:intergenic
AGTTGTTGGAATGGTATGAA+GGG 0.627832 2_1:+72512700 None:intergenic
ACTTACAAGGTAGCGCATGA+TGG 0.628244 2_1:+72513298 None:intergenic
TCTTGTAAAGGTAATTAGTG+AGG 0.629755 2_1:-72513396 Msa0223040:CDS
AAACTTGTGAAAATGAACCA+TGG 0.633234 2_1:+72512260 None:intergenic
ACATGGTCTAAACACACTTG+AGG 0.636524 2_1:-72512828 Msa0223040:CDS
AGTCAAGAGAGGATGGCACA+TGG 0.639876 2_1:-72511581 Msa0223040:CDS
TGAAATGGGAAAGTCAAGAG+AGG 0.644013 2_1:-72511592 Msa0223040:CDS
CACATGAAATCATCAACCGA+AGG 0.646756 2_1:-72512629 Msa0223040:CDS
AAATGTTAAAGCCCAAGGAA+CGG 0.649091 2_1:-72512360 Msa0223040:CDS
CTTGGGAGAGAAACTTCAAG+AGG 0.675115 2_1:-72512933 Msa0223040:CDS
TAGATGTTAACAATACATTG+TGG 0.706165 2_1:+72511102 None:intergenic
CAGTAAGTGAACCACCACCA+AGG 0.716844 2_1:+72512765 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGTTCAGTATTTTAAATTA+AGG + chr2_1:72511409-72511428 None:intergenic 15.0%
!! AAAAAGAAATGAAATTGAAA+AGG - chr2_1:72513304-72513323 Msa0223040:CDS 15.0%
!!! AAGTTCAGTATTTTAAATTA+AGG + chr2_1:72511409-72511428 None:intergenic 15.0%
!! AAAAAGAAATGAAATTGAAA+AGG - chr2_1:72513304-72513323 Msa0223040:CDS 15.0%
!! ATTTCATCAAATGAATTTGT+TGG + chr2_1:72511273-72511292 None:intergenic 20.0%
!!! CAGTATTTTAAATTAAGGTA+TGG + chr2_1:72511404-72511423 None:intergenic 20.0%
!! GAAACACTTAATACATAATA+TGG + chr2_1:72511494-72511513 None:intergenic 20.0%
!! TTAATACACAGGTAAAATAA+AGG + chr2_1:72511516-72511535 None:intergenic 20.0%
!!! AATTGTTTTCCTTTTTGAAT+AGG - chr2_1:72511534-72511553 Msa0223040:CDS 20.0%
!! TGTGGTTTGAAAAAATTAAT+TGG + chr2_1:72511583-72511602 None:intergenic 20.0%
!!! GAAATTTCTTTTTTGTGAAT+GGG + chr2_1:72511964-72511983 None:intergenic 20.0%
!!! AGAAATTTCTTTTTTGTGAA+TGG + chr2_1:72511965-72511984 None:intergenic 20.0%
!! AGAAAATCAAAGAAAACTTA+AGG - chr2_1:72512590-72512609 Msa0223040:CDS 20.0%
!! AATGGTAAAAACCAAAAATT+AGG + chr2_1:72512663-72512682 None:intergenic 20.0%
!! TGAAAAGGTTGAATTTATAT+AGG - chr2_1:72513319-72513338 Msa0223040:CDS 20.0%
!! ATTTCATCAAATGAATTTGT+TGG + chr2_1:72511273-72511292 None:intergenic 20.0%
!!! CAGTATTTTAAATTAAGGTA+TGG + chr2_1:72511404-72511423 None:intergenic 20.0%
!! GAAACACTTAATACATAATA+TGG + chr2_1:72511494-72511513 None:intergenic 20.0%
!! TTAATACACAGGTAAAATAA+AGG + chr2_1:72511516-72511535 None:intergenic 20.0%
!!! AATTGTTTTCCTTTTTGAAT+AGG - chr2_1:72511534-72511553 Msa0223040:CDS 20.0%
!! TGTGGTTTGAAAAAATTAAT+TGG + chr2_1:72511583-72511602 None:intergenic 20.0%
!!! GAAATTTCTTTTTTGTGAAT+GGG + chr2_1:72511964-72511983 None:intergenic 20.0%
!!! AGAAATTTCTTTTTTGTGAA+TGG + chr2_1:72511965-72511984 None:intergenic 20.0%
!! AGAAAATCAAAGAAAACTTA+AGG - chr2_1:72512590-72512609 Msa0223040:CDS 20.0%
!! AATGGTAAAAACCAAAAATT+AGG + chr2_1:72512663-72512682 None:intergenic 20.0%
!! TGAAAAGGTTGAATTTATAT+AGG - chr2_1:72513319-72513338 Msa0223040:CDS 20.0%
! ATGGTTGTTAGATCAAAATA+TGG - chr2_1:72511374-72511393 Msa0223040:CDS 25.0%
! AAGGAAAACAATTAATACAC+AGG + chr2_1:72511527-72511546 None:intergenic 25.0%
! AAACCACATTACAATAACTT+GGG - chr2_1:72511595-72511614 Msa0223040:CDS 25.0%
!! GTTTAGCATTTTTAATGGTT+AGG + chr2_1:72511753-72511772 None:intergenic 25.0%
!!! AGAGTGTTTAGCATTTTTAA+TGG + chr2_1:72511758-72511777 None:intergenic 25.0%
!!! ATGTGTTATGTTTTTTGCAT+TGG + chr2_1:72511815-72511834 None:intergenic 25.0%
! CAAAATAGGAAGAAAAAGAT+GGG + chr2_1:72511883-72511902 None:intergenic 25.0%
! ACAAAATAGGAAGAAAAAGA+TGG + chr2_1:72511884-72511903 None:intergenic 25.0%
! AAAAAAGAAATTTCTCACGA+AGG - chr2_1:72511970-72511989 Msa0223040:CDS 25.0%
!! ATTTGAGCTTTTCAATTTTG+TGG + chr2_1:72512022-72512041 None:intergenic 25.0%
! ATAAAATACTCTTTCGCATT+GGG - chr2_1:72512054-72512073 Msa0223040:CDS 25.0%
! TTATTGTATAGCAAAGAAAG+TGG - chr2_1:72512096-72512115 Msa0223040:CDS 25.0%
!! AGAATCATCGAAACTTTTAT+TGG - chr2_1:72512420-72512439 Msa0223040:CDS 25.0%
!! GAATCATCGAAACTTTTATT+GGG - chr2_1:72512421-72512440 Msa0223040:CDS 25.0%
!! TTTTCTAAGCTCATTAACTT+GGG + chr2_1:72512616-72512635 None:intergenic 25.0%
!! ATTTTCTAAGCTCATTAACT+TGG + chr2_1:72512617-72512636 None:intergenic 25.0%
! TAATGAGCTTAGAAAATTTG+TGG - chr2_1:72512620-72512639 Msa0223040:CDS 25.0%
! AAACTTGAATGATTTCATCT+TGG + chr2_1:72512892-72512911 None:intergenic 25.0%
! ACAAATTAAATACTGCTAGA+GGG + chr2_1:72513209-72513228 None:intergenic 25.0%
! TAGATGTTAACAATACATTG+TGG + chr2_1:72513390-72513409 None:intergenic 25.0%
! ATGGTTGTTAGATCAAAATA+TGG - chr2_1:72511374-72511393 Msa0223040:CDS 25.0%
! AAGGAAAACAATTAATACAC+AGG + chr2_1:72511527-72511546 None:intergenic 25.0%
! AAACCACATTACAATAACTT+GGG - chr2_1:72511595-72511614 Msa0223040:CDS 25.0%
!! GTTTAGCATTTTTAATGGTT+AGG + chr2_1:72511753-72511772 None:intergenic 25.0%
!!! AGAGTGTTTAGCATTTTTAA+TGG + chr2_1:72511758-72511777 None:intergenic 25.0%
!!! ATGTGTTATGTTTTTTGCAT+TGG + chr2_1:72511815-72511834 None:intergenic 25.0%
! CAAAATAGGAAGAAAAAGAT+GGG + chr2_1:72511883-72511902 None:intergenic 25.0%
! ACAAAATAGGAAGAAAAAGA+TGG + chr2_1:72511884-72511903 None:intergenic 25.0%
! AAAAAAGAAATTTCTCACGA+AGG - chr2_1:72511970-72511989 Msa0223040:CDS 25.0%
!! ATTTGAGCTTTTCAATTTTG+TGG + chr2_1:72512022-72512041 None:intergenic 25.0%
! ATAAAATACTCTTTCGCATT+GGG - chr2_1:72512054-72512073 Msa0223040:CDS 25.0%
! TTATTGTATAGCAAAGAAAG+TGG - chr2_1:72512096-72512115 Msa0223040:CDS 25.0%
!! AGAATCATCGAAACTTTTAT+TGG - chr2_1:72512420-72512439 Msa0223040:CDS 25.0%
!! GAATCATCGAAACTTTTATT+GGG - chr2_1:72512421-72512440 Msa0223040:CDS 25.0%
!! TTTTCTAAGCTCATTAACTT+GGG + chr2_1:72512616-72512635 None:intergenic 25.0%
!! ATTTTCTAAGCTCATTAACT+TGG + chr2_1:72512617-72512636 None:intergenic 25.0%
! TAATGAGCTTAGAAAATTTG+TGG - chr2_1:72512620-72512639 Msa0223040:CDS 25.0%
! AAACTTGAATGATTTCATCT+TGG + chr2_1:72512892-72512911 None:intergenic 25.0%
! ACAAATTAAATACTGCTAGA+GGG + chr2_1:72513209-72513228 None:intergenic 25.0%
! TAGATGTTAACAATACATTG+TGG + chr2_1:72513390-72513409 None:intergenic 25.0%
TCTTGTAAAGGTAATTAGTG+AGG - chr2_1:72511149-72511168 Msa0223040:three_prime_UTR 30.0%
!! ATGAATTTGTTGGACTTACA+AGG + chr2_1:72511263-72511282 None:intergenic 30.0%
GAATCCTAATTCACACATTA+TGG + chr2_1:72511310-72511329 None:intergenic 30.0%
! GTTTTCCTTTTTGAATAGGA+TGG - chr2_1:72511538-72511557 Msa0223040:CDS 30.0%
CAAACCACATTACAATAACT+TGG - chr2_1:72511594-72511613 Msa0223040:CDS 30.0%
AGATACCAATCTAATAGGAA+TGG - chr2_1:72511636-72511655 Msa0223040:CDS 30.0%
CAATTCCATTCCTATTAGAT+TGG + chr2_1:72511644-72511663 None:intergenic 30.0%
CAATCTAATAGGAATGGAAT+TGG - chr2_1:72511642-72511661 Msa0223040:CDS 30.0%
!!! ATGTTTTTTGCATTGGATTC+AGG + chr2_1:72511808-72511827 None:intergenic 30.0%
AGAAAAAGATGGGTAATTCT+TGG + chr2_1:72511873-72511892 None:intergenic 30.0%
GATAAAATACTCTTTCGCAT+TGG - chr2_1:72512053-72512072 Msa0223040:CDS 30.0%
AAACTTGTGAAAATGAACCA+TGG + chr2_1:72512288-72512307 None:intergenic 30.0%
! TTTTCGGCCCAATATTAAAA+CGG + chr2_1:72512367-72512386 None:intergenic 30.0%
AGTTTCGATGATTCTTTCTA+TGG + chr2_1:72512415-72512434 None:intergenic 30.0%
!!! GCTTTCATGTTCTATTTTTG+TGG - chr2_1:72512443-72512462 Msa0223040:CDS 30.0%
! TTTTTGTGGATCTTCTTTTC+TGG - chr2_1:72512457-72512476 Msa0223040:CDS 30.0%
! TAGCAAAACTGATTCACAAT+TGG - chr2_1:72512566-72512585 Msa0223040:CDS 30.0%
! AGCAAAACTGATTCACAATT+GGG - chr2_1:72512567-72512586 Msa0223040:CDS 30.0%
! TGGTTTTTACCATTTCATAG+TGG - chr2_1:72512669-72512688 Msa0223040:CDS 30.0%
TTATAGCAACCACTATGAAA+TGG + chr2_1:72512681-72512700 None:intergenic 30.0%
TTCATAGTGGTTGCTATAAT+AGG - chr2_1:72512682-72512701 Msa0223040:CDS 30.0%
!! TTAGTGGATGTTTTGCATTT+TGG - chr2_1:72512726-72512745 Msa0223040:CDS 30.0%
AATTTCTTCAAGACCTTTGA+TGG + chr2_1:72512868-72512887 None:intergenic 30.0%
ATGTCTAGTGATGTTGAAAT+GGG - chr2_1:72512939-72512958 Msa0223040:CDS 30.0%
! TCATAGAGACTTTTCTTCAA+AGG - chr2_1:72513021-72513040 Msa0223040:intron 30.0%
!!! TTTTGAGTTTGAGTGTTGTT+GGG - chr2_1:72513108-72513127 Msa0223040:intron 30.0%
TGAGACAATAGAGATTGAAA+AGG - chr2_1:72513154-72513173 Msa0223040:intron 30.0%
CACAAATTAAATACTGCTAG+AGG + chr2_1:72513210-72513229 None:intergenic 30.0%
TCTTGTAAAGGTAATTAGTG+AGG - chr2_1:72511149-72511168 Msa0223040:three_prime_UTR 30.0%
!! ATGAATTTGTTGGACTTACA+AGG + chr2_1:72511263-72511282 None:intergenic 30.0%
GAATCCTAATTCACACATTA+TGG + chr2_1:72511310-72511329 None:intergenic 30.0%
! GTTTTCCTTTTTGAATAGGA+TGG - chr2_1:72511538-72511557 Msa0223040:CDS 30.0%
CAAACCACATTACAATAACT+TGG - chr2_1:72511594-72511613 Msa0223040:CDS 30.0%
AGATACCAATCTAATAGGAA+TGG - chr2_1:72511636-72511655 Msa0223040:CDS 30.0%
CAATTCCATTCCTATTAGAT+TGG + chr2_1:72511644-72511663 None:intergenic 30.0%
CAATCTAATAGGAATGGAAT+TGG - chr2_1:72511642-72511661 Msa0223040:CDS 30.0%
!!! ATGTTTTTTGCATTGGATTC+AGG + chr2_1:72511808-72511827 None:intergenic 30.0%
AGAAAAAGATGGGTAATTCT+TGG + chr2_1:72511873-72511892 None:intergenic 30.0%
GATAAAATACTCTTTCGCAT+TGG - chr2_1:72512053-72512072 Msa0223040:CDS 30.0%
AAACTTGTGAAAATGAACCA+TGG + chr2_1:72512288-72512307 None:intergenic 30.0%
! TTTTCGGCCCAATATTAAAA+CGG + chr2_1:72512367-72512386 None:intergenic 30.0%
AGTTTCGATGATTCTTTCTA+TGG + chr2_1:72512415-72512434 None:intergenic 30.0%
!!! GCTTTCATGTTCTATTTTTG+TGG - chr2_1:72512443-72512462 Msa0223040:CDS 30.0%
! TTTTTGTGGATCTTCTTTTC+TGG - chr2_1:72512457-72512476 Msa0223040:CDS 30.0%
! TAGCAAAACTGATTCACAAT+TGG - chr2_1:72512566-72512585 Msa0223040:CDS 30.0%
! AGCAAAACTGATTCACAATT+GGG - chr2_1:72512567-72512586 Msa0223040:CDS 30.0%
! TGGTTTTTACCATTTCATAG+TGG - chr2_1:72512669-72512688 Msa0223040:CDS 30.0%
TTATAGCAACCACTATGAAA+TGG + chr2_1:72512681-72512700 None:intergenic 30.0%
TTCATAGTGGTTGCTATAAT+AGG - chr2_1:72512682-72512701 Msa0223040:CDS 30.0%
!! TTAGTGGATGTTTTGCATTT+TGG - chr2_1:72512726-72512745 Msa0223040:CDS 30.0%
AATTTCTTCAAGACCTTTGA+TGG + chr2_1:72512868-72512887 None:intergenic 30.0%
ATGTCTAGTGATGTTGAAAT+GGG - chr2_1:72512939-72512958 Msa0223040:CDS 30.0%
! TCATAGAGACTTTTCTTCAA+AGG - chr2_1:72513021-72513040 Msa0223040:intron 30.0%
!!! TTTTGAGTTTGAGTGTTGTT+GGG - chr2_1:72513108-72513127 Msa0223040:intron 30.0%
TGAGACAATAGAGATTGAAA+AGG - chr2_1:72513154-72513173 Msa0223040:intron 30.0%
CACAAATTAAATACTGCTAG+AGG + chr2_1:72513210-72513229 None:intergenic 30.0%
TGTAAAGGTAATTAGTGAGG+AGG - chr2_1:72511152-72511171 Msa0223040:three_prime_UTR 35.0%
AATCTCTCGTGTTAAGTCTT+TGG - chr2_1:72511197-72511216 Msa0223040:three_prime_UTR 35.0%
ACCTCCATAATGTGTGAATT+AGG - chr2_1:72511303-72511322 Msa0223040:three_prime_UTR 35.0%
TCCTAATTCACACATTATGG+AGG + chr2_1:72511307-72511326 None:intergenic 35.0%
TCACACTATCAGTACATTGA+TGG - chr2_1:72511355-72511374 Msa0223040:CDS 35.0%
TCATGCCATCCTATTCAAAA+AGG + chr2_1:72511546-72511565 None:intergenic 35.0%
! TTTTTGAATAGGATGGCATG+AGG - chr2_1:72511545-72511564 Msa0223040:CDS 35.0%
TCTCCCAAGTTATTGTAATG+TGG + chr2_1:72511601-72511620 None:intergenic 35.0%
GAGGTAGATACCAATCTAAT+AGG - chr2_1:72511631-72511650 Msa0223040:CDS 35.0%
! GTTGATTGGGAATGATTTGT+AGG + chr2_1:72511677-72511696 None:intergenic 35.0%
! CTTGGTCAAGAATGTTGATT+GGG + chr2_1:72511690-72511709 None:intergenic 35.0%
TCTTGGTCAAGAATGTTGAT+TGG + chr2_1:72511691-72511710 None:intergenic 35.0%
! TTAGACCATGTTTAAGGTCT+TGG + chr2_1:72511708-72511727 None:intergenic 35.0%
GTGTGTTTAGACCATGTTTA+AGG + chr2_1:72511714-72511733 None:intergenic 35.0%
AATGCTAAACACTCTTTCCT+TGG - chr2_1:72511763-72511782 Msa0223040:CDS 35.0%
AGTTGTTGGAATGGTATGAA+GGG + chr2_1:72511848-72511867 None:intergenic 35.0%
TGATTTCATGTGAAGGAGTT+TGG + chr2_1:72511908-72511927 None:intergenic 35.0%
!!! TTCTTTTTTGTGAATGGGCT+GGG + chr2_1:72511959-72511978 None:intergenic 35.0%
!!! TTTCTTTTTTGTGAATGGGC+TGG + chr2_1:72511960-72511979 None:intergenic 35.0%
! TTTCAATTTTGTGGCCCAAT+TGG + chr2_1:72512013-72512032 None:intergenic 35.0%
ATAGCAAAGAAAGTGGTTTC+TGG - chr2_1:72512103-72512122 Msa0223040:CDS 35.0%
TCTACCTGAAACATAGCTTA+CGG + chr2_1:72512145-72512164 None:intergenic 35.0%
AAATGTTAAAGCCCAAGGAA+CGG - chr2_1:72512185-72512204 Msa0223040:CDS 35.0%
!! ATTGGGGCCGTTTTAATATT+GGG - chr2_1:72512357-72512376 Msa0223040:CDS 35.0%
ATATTGGGCCGAAAAAACAT+AGG - chr2_1:72512372-72512391 Msa0223040:CDS 35.0%
ACATTGGGAGAGTTCATATT+TGG + chr2_1:72512505-72512524 None:intergenic 35.0%
AACAAGTGTGGACAAACATT+GGG + chr2_1:72512520-72512539 None:intergenic 35.0%
! TCCACACTTGTTGAATCAAT+TGG - chr2_1:72512528-72512547 Msa0223040:CDS 35.0%
! TCCAATTGATTCAACAAGTG+TGG + chr2_1:72512532-72512551 None:intergenic 35.0%
!! GTGAATCAGTTTTGCTATCT+AGG + chr2_1:72512563-72512582 None:intergenic 35.0%
GCTTAGAAAATTTGTGGTAG+AGG - chr2_1:72512626-72512645 Msa0223040:CDS 35.0%
! CAGAAGCTGAACCTAATTTT+TGG - chr2_1:72512649-72512668 Msa0223040:CDS 35.0%
! GGTTGCTATAATAGGCTTTT+AGG - chr2_1:72512690-72512709 Msa0223040:CDS 35.0%
AGGCTCATTATCAAAGTTAG+TGG - chr2_1:72512710-72512729 Msa0223040:CDS 35.0%
AAGTGAACTTCTACATGCTA+AGG - chr2_1:72512827-72512846 Msa0223040:CDS 35.0%
CATGTCTAGTGATGTTGAAA+TGG - chr2_1:72512938-72512957 Msa0223040:CDS 35.0%
GAGAAGTTGTATAGTGATGA+AGG - chr2_1:72513059-72513078 Msa0223040:intron 35.0%
!!! GTTTTGAGTTTGAGTGTTGT+TGG - chr2_1:72513107-72513126 Msa0223040:intron 35.0%
TAGAGATTGAAAAGGCAATG+AGG - chr2_1:72513162-72513181 Msa0223040:intron 35.0%
AGAGATTGAAAAGGCAATGA+GGG - chr2_1:72513163-72513182 Msa0223040:intron 35.0%
! AATGAGGGAACTTGTTCAAT+GGG - chr2_1:72513178-72513197 Msa0223040:intron 35.0%
TGTAAAGGTAATTAGTGAGG+AGG - chr2_1:72511152-72511171 Msa0223040:three_prime_UTR 35.0%
AATCTCTCGTGTTAAGTCTT+TGG - chr2_1:72511197-72511216 Msa0223040:three_prime_UTR 35.0%
ACCTCCATAATGTGTGAATT+AGG - chr2_1:72511303-72511322 Msa0223040:three_prime_UTR 35.0%
TCCTAATTCACACATTATGG+AGG + chr2_1:72511307-72511326 None:intergenic 35.0%
TCACACTATCAGTACATTGA+TGG - chr2_1:72511355-72511374 Msa0223040:CDS 35.0%
TCATGCCATCCTATTCAAAA+AGG + chr2_1:72511546-72511565 None:intergenic 35.0%
! TTTTTGAATAGGATGGCATG+AGG - chr2_1:72511545-72511564 Msa0223040:CDS 35.0%
TCTCCCAAGTTATTGTAATG+TGG + chr2_1:72511601-72511620 None:intergenic 35.0%
GAGGTAGATACCAATCTAAT+AGG - chr2_1:72511631-72511650 Msa0223040:CDS 35.0%
! GTTGATTGGGAATGATTTGT+AGG + chr2_1:72511677-72511696 None:intergenic 35.0%
! CTTGGTCAAGAATGTTGATT+GGG + chr2_1:72511690-72511709 None:intergenic 35.0%
TCTTGGTCAAGAATGTTGAT+TGG + chr2_1:72511691-72511710 None:intergenic 35.0%
! TTAGACCATGTTTAAGGTCT+TGG + chr2_1:72511708-72511727 None:intergenic 35.0%
GTGTGTTTAGACCATGTTTA+AGG + chr2_1:72511714-72511733 None:intergenic 35.0%
AATGCTAAACACTCTTTCCT+TGG - chr2_1:72511763-72511782 Msa0223040:CDS 35.0%
AGTTGTTGGAATGGTATGAA+GGG + chr2_1:72511848-72511867 None:intergenic 35.0%
TGATTTCATGTGAAGGAGTT+TGG + chr2_1:72511908-72511927 None:intergenic 35.0%
!!! TTCTTTTTTGTGAATGGGCT+GGG + chr2_1:72511959-72511978 None:intergenic 35.0%
!!! TTTCTTTTTTGTGAATGGGC+TGG + chr2_1:72511960-72511979 None:intergenic 35.0%
! TTTCAATTTTGTGGCCCAAT+TGG + chr2_1:72512013-72512032 None:intergenic 35.0%
ATAGCAAAGAAAGTGGTTTC+TGG - chr2_1:72512103-72512122 Msa0223040:CDS 35.0%
TCTACCTGAAACATAGCTTA+CGG + chr2_1:72512145-72512164 None:intergenic 35.0%
AAATGTTAAAGCCCAAGGAA+CGG - chr2_1:72512185-72512204 Msa0223040:CDS 35.0%
!! ATTGGGGCCGTTTTAATATT+GGG - chr2_1:72512357-72512376 Msa0223040:CDS 35.0%
ATATTGGGCCGAAAAAACAT+AGG - chr2_1:72512372-72512391 Msa0223040:CDS 35.0%
ACATTGGGAGAGTTCATATT+TGG + chr2_1:72512505-72512524 None:intergenic 35.0%
AACAAGTGTGGACAAACATT+GGG + chr2_1:72512520-72512539 None:intergenic 35.0%
! TCCACACTTGTTGAATCAAT+TGG - chr2_1:72512528-72512547 Msa0223040:CDS 35.0%
! TCCAATTGATTCAACAAGTG+TGG + chr2_1:72512532-72512551 None:intergenic 35.0%
!! GTGAATCAGTTTTGCTATCT+AGG + chr2_1:72512563-72512582 None:intergenic 35.0%
GCTTAGAAAATTTGTGGTAG+AGG - chr2_1:72512626-72512645 Msa0223040:CDS 35.0%
! CAGAAGCTGAACCTAATTTT+TGG - chr2_1:72512649-72512668 Msa0223040:CDS 35.0%
! GGTTGCTATAATAGGCTTTT+AGG - chr2_1:72512690-72512709 Msa0223040:CDS 35.0%
AGGCTCATTATCAAAGTTAG+TGG - chr2_1:72512710-72512729 Msa0223040:CDS 35.0%
AAGTGAACTTCTACATGCTA+AGG - chr2_1:72512827-72512846 Msa0223040:CDS 35.0%
CATGTCTAGTGATGTTGAAA+TGG - chr2_1:72512938-72512957 Msa0223040:CDS 35.0%
GAGAAGTTGTATAGTGATGA+AGG - chr2_1:72513059-72513078 Msa0223040:intron 35.0%
!!! GTTTTGAGTTTGAGTGTTGT+TGG - chr2_1:72513107-72513126 Msa0223040:intron 35.0%
TAGAGATTGAAAAGGCAATG+AGG - chr2_1:72513162-72513181 Msa0223040:intron 35.0%
AGAGATTGAAAAGGCAATGA+GGG - chr2_1:72513163-72513182 Msa0223040:intron 35.0%
! AATGAGGGAACTTGTTCAAT+GGG - chr2_1:72513178-72513197 Msa0223040:intron 35.0%
GAGACTGAAGCTTCTTGTAA+AGG - chr2_1:72511137-72511156 Msa0223040:three_prime_UTR 40.0%
GAGGAAAATACTTCTGCACT+TGG - chr2_1:72511171-72511190 Msa0223040:three_prime_UTR 40.0%
GAAATTCACACATCCGATCT+CGG - chr2_1:72511429-72511448 Msa0223040:CDS 40.0%
CTTGACCAAGACCTTAAACA+TGG - chr2_1:72511700-72511719 Msa0223040:CDS 40.0%
ACATGGTCTAAACACACTTG+AGG - chr2_1:72511717-72511736 Msa0223040:CDS 40.0%
GAGTTGTTGGAATGGTATGA+AGG + chr2_1:72511849-72511868 None:intergenic 40.0%
TTCTTGGTGAGTTGTTGGAA+TGG + chr2_1:72511857-72511876 None:intergenic 40.0%
GGTAATTCTTGGTGAGTTGT+TGG + chr2_1:72511862-72511881 None:intergenic 40.0%
GAAGGAGTTTGGCACAAAAT+AGG + chr2_1:72511897-72511916 None:intergenic 40.0%
!! CGGTTGATGATTTCATGTGA+AGG + chr2_1:72511915-72511934 None:intergenic 40.0%
CACATGAAATCATCAACCGA+AGG - chr2_1:72511916-72511935 Msa0223040:CDS 40.0%
ACGAAGGTAACGACGATAAA+TGG - chr2_1:72511986-72512005 Msa0223040:CDS 40.0%
CGAAGGTAACGACGATAAAT+GGG - chr2_1:72511987-72512006 Msa0223040:CDS 40.0%
GAAAAGCTCAAATCTTCTCC+CGG - chr2_1:72512029-72512048 Msa0223040:CDS 40.0%
!!! CGAAAGAGTATTTTATCGCC+GGG + chr2_1:72512050-72512069 None:intergenic 40.0%
!!! GCGAAAGAGTATTTTATCGC+CGG + chr2_1:72512051-72512070 None:intergenic 40.0%
ATAAGCCCATGAAGACTGAT+AGG + chr2_1:72512080-72512099 None:intergenic 40.0%
!! AAAGAAAGTGGTTTCTGGTC+TGG - chr2_1:72512108-72512127 Msa0223040:CDS 40.0%
!! AAGAAAGTGGTTTCTGGTCT+GGG - chr2_1:72512109-72512128 Msa0223040:CDS 40.0%
! TCCTTGGGCTTTAACATTTG+CGG + chr2_1:72512184-72512203 None:intergenic 40.0%
GATTCTTGTCACTACTTCCA+TGG - chr2_1:72512268-72512287 Msa0223040:CDS 40.0%
TTCAACGAAGCCGTATGTAT+GGG - chr2_1:72512310-72512329 Msa0223040:CDS 40.0%
!! GATTGGGGCCGTTTTAATAT+TGG - chr2_1:72512356-72512375 Msa0223040:CDS 40.0%
!!! TTGGTGGGCCTATGTTTTTT+CGG + chr2_1:72512383-72512402 None:intergenic 40.0%
!! ATCTTCTTTTCTGGCCCAAA+AGG - chr2_1:72512466-72512485 Msa0223040:CDS 40.0%
!! TCTTCTTTTCTGGCCCAAAA+GGG - chr2_1:72512467-72512486 Msa0223040:CDS 40.0%
CAACAAGTGTGGACAAACAT+TGG + chr2_1:72512521-72512540 None:intergenic 40.0%
ATCATGTGCTCTTCCATCAA+AGG - chr2_1:72512852-72512871 Msa0223040:CDS 40.0%
TGAAATGGGAAAGTCAAGAG+AGG - chr2_1:72512953-72512972 Msa0223040:CDS 40.0%
GTATAGTGATGAAGGTGAGA+AGG - chr2_1:72513067-72513086 Msa0223040:intron 40.0%
! CAATGAGGGAACTTGTTCAA+TGG - chr2_1:72513177-72513196 Msa0223040:intron 40.0%
GAGACTGAAGCTTCTTGTAA+AGG - chr2_1:72511137-72511156 Msa0223040:three_prime_UTR 40.0%
GAGGAAAATACTTCTGCACT+TGG - chr2_1:72511171-72511190 Msa0223040:three_prime_UTR 40.0%
GAAATTCACACATCCGATCT+CGG - chr2_1:72511429-72511448 Msa0223040:CDS 40.0%
CTTGACCAAGACCTTAAACA+TGG - chr2_1:72511700-72511719 Msa0223040:CDS 40.0%
ACATGGTCTAAACACACTTG+AGG - chr2_1:72511717-72511736 Msa0223040:CDS 40.0%
GAGTTGTTGGAATGGTATGA+AGG + chr2_1:72511849-72511868 None:intergenic 40.0%
TTCTTGGTGAGTTGTTGGAA+TGG + chr2_1:72511857-72511876 None:intergenic 40.0%
GGTAATTCTTGGTGAGTTGT+TGG + chr2_1:72511862-72511881 None:intergenic 40.0%
GAAGGAGTTTGGCACAAAAT+AGG + chr2_1:72511897-72511916 None:intergenic 40.0%
!! CGGTTGATGATTTCATGTGA+AGG + chr2_1:72511915-72511934 None:intergenic 40.0%
CACATGAAATCATCAACCGA+AGG - chr2_1:72511916-72511935 Msa0223040:CDS 40.0%
ACGAAGGTAACGACGATAAA+TGG - chr2_1:72511986-72512005 Msa0223040:CDS 40.0%
CGAAGGTAACGACGATAAAT+GGG - chr2_1:72511987-72512006 Msa0223040:CDS 40.0%
GAAAAGCTCAAATCTTCTCC+CGG - chr2_1:72512029-72512048 Msa0223040:CDS 40.0%
!!! CGAAAGAGTATTTTATCGCC+GGG + chr2_1:72512050-72512069 None:intergenic 40.0%
!!! GCGAAAGAGTATTTTATCGC+CGG + chr2_1:72512051-72512070 None:intergenic 40.0%
ATAAGCCCATGAAGACTGAT+AGG + chr2_1:72512080-72512099 None:intergenic 40.0%
!! AAAGAAAGTGGTTTCTGGTC+TGG - chr2_1:72512108-72512127 Msa0223040:CDS 40.0%
!! AAGAAAGTGGTTTCTGGTCT+GGG - chr2_1:72512109-72512128 Msa0223040:CDS 40.0%
! TCCTTGGGCTTTAACATTTG+CGG + chr2_1:72512184-72512203 None:intergenic 40.0%
GATTCTTGTCACTACTTCCA+TGG - chr2_1:72512268-72512287 Msa0223040:CDS 40.0%
TTCAACGAAGCCGTATGTAT+GGG - chr2_1:72512310-72512329 Msa0223040:CDS 40.0%
!! GATTGGGGCCGTTTTAATAT+TGG - chr2_1:72512356-72512375 Msa0223040:CDS 40.0%
!!! TTGGTGGGCCTATGTTTTTT+CGG + chr2_1:72512383-72512402 None:intergenic 40.0%
!! ATCTTCTTTTCTGGCCCAAA+AGG - chr2_1:72512466-72512485 Msa0223040:CDS 40.0%
!! TCTTCTTTTCTGGCCCAAAA+GGG - chr2_1:72512467-72512486 Msa0223040:CDS 40.0%
CAACAAGTGTGGACAAACAT+TGG + chr2_1:72512521-72512540 None:intergenic 40.0%
ATCATGTGCTCTTCCATCAA+AGG - chr2_1:72512852-72512871 Msa0223040:CDS 40.0%
TGAAATGGGAAAGTCAAGAG+AGG - chr2_1:72512953-72512972 Msa0223040:CDS 40.0%
GTATAGTGATGAAGGTGAGA+AGG - chr2_1:72513067-72513086 Msa0223040:intron 40.0%
! CAATGAGGGAACTTGTTCAA+TGG - chr2_1:72513177-72513196 Msa0223040:intron 40.0%
! GGAAAGAAGCTTGGTTCGTT+TGG + chr2_1:72511226-72511245 None:intergenic 45.0%
!! CATGATGGTGGAAAGAAGCT+TGG + chr2_1:72511235-72511254 None:intergenic 45.0%
ACTTACAAGGTAGCGCATGA+TGG + chr2_1:72511250-72511269 None:intergenic 45.0%
TTGAATAGGATGGCATGAGG+TGG - chr2_1:72511548-72511567 Msa0223040:CDS 45.0%
TGAATAGGATGGCATGAGGT+GGG - chr2_1:72511549-72511568 Msa0223040:CDS 45.0%
CTTGGGAGAGAAACTTCAAG+AGG - chr2_1:72511612-72511631 Msa0223040:CDS 45.0%
GCTAAACACTCTTTCCTTGG+TGG - chr2_1:72511766-72511785 Msa0223040:CDS 45.0%
AAACACTCTTTCCTTGGTGG+TGG - chr2_1:72511769-72511788 Msa0223040:CDS 45.0%
! TTGGACATTTGTTGGGCCTT+CGG + chr2_1:72511935-72511954 None:intergenic 45.0%
ACGACGATAAATGGGCCAAT+TGG - chr2_1:72511995-72512014 Msa0223040:CDS 45.0%
CGACGATAAATGGGCCAATT+GGG - chr2_1:72511996-72512015 Msa0223040:CDS 45.0%
ATTGGGCCTATCAGTCTTCA+TGG - chr2_1:72512071-72512090 Msa0223040:CDS 45.0%
TTGGGCCTATCAGTCTTCAT+GGG - chr2_1:72512072-72512091 Msa0223040:CDS 45.0%
TGAAACATAGCTTACGGCCA+CGG + chr2_1:72512139-72512158 None:intergenic 45.0%
! CAGGTAGAGAAGCGACTTTT+CGG - chr2_1:72512157-72512176 Msa0223040:CDS 45.0%
! AGGTAGAGAAGCGACTTTTC+GGG - chr2_1:72512158-72512177 Msa0223040:CDS 45.0%
AGTTCCAATCACCGTTCCTT+GGG + chr2_1:72512199-72512218 None:intergenic 45.0%
ACGGTGATTGGAACTGTGTA+CGG - chr2_1:72512204-72512223 Msa0223040:CDS 45.0%
CATACATACGGCTTCGTTGA+AGG + chr2_1:72512311-72512330 None:intergenic 45.0%
CTTCAACGAAGCCGTATGTA+TGG - chr2_1:72512309-72512328 Msa0223040:CDS 45.0%
! GCACATGTTGAAGCCCTTTT+GGG + chr2_1:72512483-72512502 None:intergenic 45.0%
ATGGGAAAGTCAAGAGAGGA+TGG - chr2_1:72512957-72512976 Msa0223040:CDS 45.0%
!! CTTTCGGGTTTGAGAGAAGA+TGG - chr2_1:72512987-72513006 Msa0223040:CDS 45.0%
TAGTGATGAAGGTGAGAAGG+AGG - chr2_1:72513070-72513089 Msa0223040:intron 45.0%
! GGAAAGAAGCTTGGTTCGTT+TGG + chr2_1:72511226-72511245 None:intergenic 45.0%
!! CATGATGGTGGAAAGAAGCT+TGG + chr2_1:72511235-72511254 None:intergenic 45.0%
ACTTACAAGGTAGCGCATGA+TGG + chr2_1:72511250-72511269 None:intergenic 45.0%
TTGAATAGGATGGCATGAGG+TGG - chr2_1:72511548-72511567 Msa0223040:CDS 45.0%
TGAATAGGATGGCATGAGGT+GGG - chr2_1:72511549-72511568 Msa0223040:CDS 45.0%
CTTGGGAGAGAAACTTCAAG+AGG - chr2_1:72511612-72511631 Msa0223040:CDS 45.0%
GCTAAACACTCTTTCCTTGG+TGG - chr2_1:72511766-72511785 Msa0223040:CDS 45.0%
AAACACTCTTTCCTTGGTGG+TGG - chr2_1:72511769-72511788 Msa0223040:CDS 45.0%
! TTGGACATTTGTTGGGCCTT+CGG + chr2_1:72511935-72511954 None:intergenic 45.0%
ACGACGATAAATGGGCCAAT+TGG - chr2_1:72511995-72512014 Msa0223040:CDS 45.0%
CGACGATAAATGGGCCAATT+GGG - chr2_1:72511996-72512015 Msa0223040:CDS 45.0%
ATTGGGCCTATCAGTCTTCA+TGG - chr2_1:72512071-72512090 Msa0223040:CDS 45.0%
TTGGGCCTATCAGTCTTCAT+GGG - chr2_1:72512072-72512091 Msa0223040:CDS 45.0%
TGAAACATAGCTTACGGCCA+CGG + chr2_1:72512139-72512158 None:intergenic 45.0%
! CAGGTAGAGAAGCGACTTTT+CGG - chr2_1:72512157-72512176 Msa0223040:CDS 45.0%
! AGGTAGAGAAGCGACTTTTC+GGG - chr2_1:72512158-72512177 Msa0223040:CDS 45.0%
AGTTCCAATCACCGTTCCTT+GGG + chr2_1:72512199-72512218 None:intergenic 45.0%
ACGGTGATTGGAACTGTGTA+CGG - chr2_1:72512204-72512223 Msa0223040:CDS 45.0%
CATACATACGGCTTCGTTGA+AGG + chr2_1:72512311-72512330 None:intergenic 45.0%
CTTCAACGAAGCCGTATGTA+TGG - chr2_1:72512309-72512328 Msa0223040:CDS 45.0%
! GCACATGTTGAAGCCCTTTT+GGG + chr2_1:72512483-72512502 None:intergenic 45.0%
ATGGGAAAGTCAAGAGAGGA+TGG - chr2_1:72512957-72512976 Msa0223040:CDS 45.0%
!! CTTTCGGGTTTGAGAGAAGA+TGG - chr2_1:72512987-72513006 Msa0223040:CDS 45.0%
TAGTGATGAAGGTGAGAAGG+AGG - chr2_1:72513070-72513089 Msa0223040:intron 45.0%
TACAAGGTAGCGCATGATGG+TGG + chr2_1:72511247-72511266 None:intergenic 50.0%
AGTCACCAAGTGCACGCATT+CGG + chr2_1:72511455-72511474 None:intergenic 50.0%
CAGTAAGTGAACCACCACCA+AGG + chr2_1:72511783-72511802 None:intergenic 50.0%
GCTGGGCTTGGACATTTGTT+GGG + chr2_1:72511942-72511961 None:intergenic 50.0%
!!! TTTTGTGAATGGGCTGGGCT+TGG + chr2_1:72511954-72511973 None:intergenic 50.0%
GAAACATAGCTTACGGCCAC+GGG + chr2_1:72512138-72512157 None:intergenic 50.0%
GTGGCCGTAAGCTATGTTTC+AGG - chr2_1:72512138-72512157 Msa0223040:CDS 50.0%
GCCGCAAATGTTAAAGCCCA+AGG - chr2_1:72512180-72512199 Msa0223040:CDS 50.0%
AAAGCCCAAGGAACGGTGAT+TGG - chr2_1:72512192-72512211 Msa0223040:CDS 50.0%
CAGTTCCAATCACCGTTCCT+TGG + chr2_1:72512200-72512219 None:intergenic 50.0%
TGGAACTGTGTACGGTGTGT+TGG - chr2_1:72512212-72512231 Msa0223040:CDS 50.0%
GGAACTGTGTACGGTGTGTT+GGG - chr2_1:72512213-72512232 Msa0223040:CDS 50.0%
GTGGCATTTCGGCTGTGATT+GGG - chr2_1:72512340-72512359 Msa0223040:CDS 50.0%
TGGCATTTCGGCTGTGATTG+GGG - chr2_1:72512341-72512360 Msa0223040:CDS 50.0%
CTTTCTATGGCGAACTCGCT+TGG + chr2_1:72512402-72512421 None:intergenic 50.0%
! GGCACATGTTGAAGCCCTTT+TGG + chr2_1:72512484-72512503 None:intergenic 50.0%
AGTCAAGAGAGGATGGCACA+TGG - chr2_1:72512964-72512983 Msa0223040:CDS 50.0%
AGAGGATGGCACATGGCTTT+CGG - chr2_1:72512971-72512990 Msa0223040:CDS 50.0%
TACAAGGTAGCGCATGATGG+TGG + chr2_1:72511247-72511266 None:intergenic 50.0%
AGTCACCAAGTGCACGCATT+CGG + chr2_1:72511455-72511474 None:intergenic 50.0%
CAGTAAGTGAACCACCACCA+AGG + chr2_1:72511783-72511802 None:intergenic 50.0%
GCTGGGCTTGGACATTTGTT+GGG + chr2_1:72511942-72511961 None:intergenic 50.0%
!!! TTTTGTGAATGGGCTGGGCT+TGG + chr2_1:72511954-72511973 None:intergenic 50.0%
GAAACATAGCTTACGGCCAC+GGG + chr2_1:72512138-72512157 None:intergenic 50.0%
GTGGCCGTAAGCTATGTTTC+AGG - chr2_1:72512138-72512157 Msa0223040:CDS 50.0%
GCCGCAAATGTTAAAGCCCA+AGG - chr2_1:72512180-72512199 Msa0223040:CDS 50.0%
AAAGCCCAAGGAACGGTGAT+TGG - chr2_1:72512192-72512211 Msa0223040:CDS 50.0%
CAGTTCCAATCACCGTTCCT+TGG + chr2_1:72512200-72512219 None:intergenic 50.0%
TGGAACTGTGTACGGTGTGT+TGG - chr2_1:72512212-72512231 Msa0223040:CDS 50.0%
GGAACTGTGTACGGTGTGTT+GGG - chr2_1:72512213-72512232 Msa0223040:CDS 50.0%
GTGGCATTTCGGCTGTGATT+GGG - chr2_1:72512340-72512359 Msa0223040:CDS 50.0%
TGGCATTTCGGCTGTGATTG+GGG - chr2_1:72512341-72512360 Msa0223040:CDS 50.0%
CTTTCTATGGCGAACTCGCT+TGG + chr2_1:72512402-72512421 None:intergenic 50.0%
! GGCACATGTTGAAGCCCTTT+TGG + chr2_1:72512484-72512503 None:intergenic 50.0%
AGTCAAGAGAGGATGGCACA+TGG - chr2_1:72512964-72512983 Msa0223040:CDS 50.0%
AGAGGATGGCACATGGCTTT+CGG - chr2_1:72512971-72512990 Msa0223040:CDS 50.0%
! TGCGTGCACTTGGTGACTGT+AGG - chr2_1:72511457-72511476 Msa0223040:CDS 55.0%
GGCTGGGCTTGGACATTTGT+TGG + chr2_1:72511943-72511962 None:intergenic 55.0%
AAGCCGTATGTATGGGCCTG+CGG - chr2_1:72512317-72512336 Msa0223040:CDS 55.0%
GGTGGCATTTCGGCTGTGAT+TGG - chr2_1:72512339-72512358 Msa0223040:CDS 55.0%
CTATGGCGAACTCGCTTGGT+GGG + chr2_1:72512398-72512417 None:intergenic 55.0%
TCTATGGCGAACTCGCTTGG+TGG + chr2_1:72512399-72512418 None:intergenic 55.0%
GAGGATGGCACATGGCTTTC+GGG - chr2_1:72512972-72512991 Msa0223040:CDS 55.0%
! TGCGTGCACTTGGTGACTGT+AGG - chr2_1:72511457-72511476 Msa0223040:CDS 55.0%
GGCTGGGCTTGGACATTTGT+TGG + chr2_1:72511943-72511962 None:intergenic 55.0%
AAGCCGTATGTATGGGCCTG+CGG - chr2_1:72512317-72512336 Msa0223040:CDS 55.0%
GGTGGCATTTCGGCTGTGAT+TGG - chr2_1:72512339-72512358 Msa0223040:CDS 55.0%
CTATGGCGAACTCGCTTGGT+GGG + chr2_1:72512398-72512417 None:intergenic 55.0%
TCTATGGCGAACTCGCTTGG+TGG + chr2_1:72512399-72512418 None:intergenic 55.0%
GAGGATGGCACATGGCTTTC+GGG - chr2_1:72512972-72512991 Msa0223040:CDS 55.0%
TGCACGCATTCGGCCGAGAT+CGG + chr2_1:72511445-72511464 None:intergenic 60.0%
AGGATGGCATGAGGTGGGAG+AGG - chr2_1:72511554-72511573 Msa0223040:CDS 60.0%
! TTTCTGGTCTGGGCTTCCCG+TGG - chr2_1:72512119-72512138 Msa0223040:CDS 60.0%
AGCCGTATGTATGGGCCTGC+GGG - chr2_1:72512318-72512337 Msa0223040:CDS 60.0%
CACCCGCAGGCCCATACATA+CGG + chr2_1:72512323-72512342 None:intergenic 60.0%
TGCACGCATTCGGCCGAGAT+CGG + chr2_1:72511445-72511464 None:intergenic 60.0%
AGGATGGCATGAGGTGGGAG+AGG - chr2_1:72511554-72511573 Msa0223040:CDS 60.0%
! TTTCTGGTCTGGGCTTCCCG+TGG - chr2_1:72512119-72512138 Msa0223040:CDS 60.0%
AGCCGTATGTATGGGCCTGC+GGG - chr2_1:72512318-72512337 Msa0223040:CDS 60.0%
CACCCGCAGGCCCATACATA+CGG + chr2_1:72512323-72512342 None:intergenic 60.0%
CTCGGCCGAATGCGTGCACT+TGG - chr2_1:72511447-72511466 Msa0223040:CDS 65.0%
CGTATGTATGGGCCTGCGGG+TGG - chr2_1:72512321-72512340 Msa0223040:CDS 65.0%
TGGGCCTGCGGGTGGCATTT+CGG - chr2_1:72512329-72512348 Msa0223040:CDS 65.0%
ACAGCCGAAATGCCACCCGC+AGG + chr2_1:72512336-72512355 None:intergenic 65.0%
CTCGGCCGAATGCGTGCACT+TGG - chr2_1:72511447-72511466 Msa0223040:CDS 65.0%
CGTATGTATGGGCCTGCGGG+TGG - chr2_1:72512321-72512340 Msa0223040:CDS 65.0%
TGGGCCTGCGGGTGGCATTT+CGG - chr2_1:72512329-72512348 Msa0223040:CDS 65.0%
ACAGCCGAAATGCCACCCGC+AGG + chr2_1:72512336-72512355 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 72511102 72513465 72511102 ID=Msa0223040;Name=Msa0223040
chr2_1 mRNA 72511102 72513465 72511102 ID=Msa0223040-mRNA-1;Parent=Msa0223040;Name=Msa0223040-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.5|1|1|1|2|242|609
chr2_1 exon 72511102 72513011 72511102 ID=Msa0223040-mRNA-1:exon:20996;Parent=Msa0223040-mRNA-1
chr2_1 exon 72513304 72513465 72513304 ID=Msa0223040-mRNA-1:exon:20995;Parent=Msa0223040-mRNA-1
chr2_1 CDS 72513304 72513465 72513304 ID=Msa0223040-mRNA-1:cds;Parent=Msa0223040-mRNA-1
chr2_1 CDS 72511344 72513011 72511344 ID=Msa0223040-mRNA-1:cds;Parent=Msa0223040-mRNA-1
chr2_1 three_prime_UTR 72511102 72511343 72511102 ID=Msa0223040-mRNA-1:three_prime_utr;Parent=Msa0223040-mRNA-1
Gene Sequence

>Msa0223040

AAAAACTACAAGCTATTAACAAATAATGTGTTGAAGAGACTGAAGCTTCTTGTAAAGGTAATTAGTGAGGAGGAAAATACTTCTGCACTTGGATTAATCTCTCGTGTTAAGTCTTTGGCAGCCAAACGAACCAAGCTTCTTTCCACCATCATGCGCTACCTTGATGGCATGAGGTGGGAGAGGCTTCCAATTAATTTTTTCAAACCACATTACAATAACTTGGGAGAGAAACTTCAAGAGGTAGATACCAATCTAATAGGAATGGAATTGGCTTTAAGTTCCTACAAATCATTCCCAATCAACATTCTTGACCAAGACCTTAAACATGGTCTAAACACACTTGAGGAGCATGTCAGCCTAACCATTAAAAATGCTAAACACTCTTTCCTTGGTGGTGGTTCACTTACTGTTCCTGAATCCAATGCAAAAAACATAACACATTTTCTTCAATCCCTTCATACCATTCCAACAACTCACCAAGAATTACCCATCTTTTTCTTCCTATTTTGTGCCAAACTCCTTCACATGAAATCATCAACCGAAGGCCCAACAAATGTCCAAGCCCAGCCCATTCACAAAAAAGAAATTTCTCACGAAGGTAACGACGATAAATGGGCCAATTGGGCCACAAAATTGAAAAGCTCAAATCTTCTCCCGGCGATAAAATACTCTTTCGCATTGGGCCTATCAGTCTTCATGGGCTTATTGTATAGCAAAGAAAGTGGTTTCTGGTCTGGGCTTCCCGTGGCCGTAAGCTATGTTTCAGGTAGAGAAGCGACTTTTCGGGCCGCAAATGTTAAAGCCCAAGGAACGGTGATTGGAACTGTGTACGGTGTGTTGGGTTGTTTTGTGTTTAATAGATTATTGTCAGTTAGATTCTTGTCACTACTTCCATGGTTCATTTTCACAAGTTTCCTTCAACGAAGCCGTATGTATGGGCCTGCGGGTGGCATTTCGGCTGTGATTGGGGCCGTTTTAATATTGGGCCGAAAAAACATAGGCCCACCAAGCGAGTTCGCCATAGAAAGAATCATCGAAACTTTTATTGGGCTTTCATGTTCTATTTTTGTGGATCTTCTTTTCTGGCCCAAAAGGGCTTCAACATGTGCCAAATATGAACTCTCCCAATGTTTGTCCACACTTGTTGAATCAATTGGAACATTGAGCCTAGATAGCAAAACTGATTCACAATTGGGAGAAAATCAAAGAAAACTTAAGGCCCAAGTTAATGAGCTTAGAAAATTTGTGGTAGAGGCAGAAGCTGAACCTAATTTTTGGTTTTTACCATTTCATAGTGGTTGCTATAATAGGCTTTTAGGCTCATTATCAAAGTTAGTGGATGTTTTGCATTTTGGCGAACGTGCATTAAAATCACTTCAACAAGAGTTTCAACGAAGTGATAATTTTGTGAATGAAGAAGTGAATATGTTACAAAGTGAACTTCTACATGCTAAGGAAATCATGTGCTCTTCCATCAAAGGTCTTGAAGAAATTTCCAAGATGAAATCATTCAAGTTTGTTGAAAAAGAGATTGAAAAAAAGAACATGTCTAGTGATGTTGAAATGGGAAAGTCAAGAGAGGATGGCACATGGCTTTCGGGTTTGAGAGAAGATGGAATAAGAGAAATCATAGAGACTTTTCTTCAAAGGTCAAGAGATGTTGTTGAGAAGTTGTATAGTGATGAAGGTGAGAAGGAGGTGAAGAGTGAAGTTGTTTTGAGTTTGAGTGTTGTTGGGTTTTGTTTGAGTGTGTGCATGCATGAGACAATAGAGATTGAAAAGGCAATGAGGGAACTTGTTCAATGGGAGAATCCCTCTAGCAGTATTTAA

Protein sequence

>Msa0223040

KNYKLLTNNVLKRLKLLVKVISEEENTSALGLISRVKSLAAKRTKLLSTIMRYLDGMRWERLPINFFKPHYNNLGEKLQEVDTNLIGMELALSSYKSFPINILDQDLKHGLNTLEEHVSLTIKNAKHSFLGGGSLTVPESNAKNITHFLQSLHTIPTTHQELPIFFFLFCAKLLHMKSSTEGPTNVQAQPIHKKEISHEGNDDKWANWATKLKSSNLLPAIKYSFALGLSVFMGLLYSKESGFWSGLPVAVSYVSGREATFRAANVKAQGTVIGTVYGVLGCFVFNRLLSVRFLSLLPWFIFTSFLQRSRMYGPAGGISAVIGAVLILGRKNIGPPSEFAIERIIETFIGLSCSIFVDLLFWPKRASTCAKYELSQCLSTLVESIGTLSLDSKTDSQLGENQRKLKAQVNELRKFVVEAEAEPNFWFLPFHSGCYNRLLGSLSKLVDVLHFGERALKSLQQEFQRSDNFVNEEVNMLQSELLHAKEIMCSSIKGLEEISKMKSFKFVEKEIEKKNMSSDVEMGKSREDGTWLSGLREDGIREIIETFLQRSRDVVEKLYSDEGEKEVKSEVVLSLSVVGFCLSVCMHETIEIEKAMRELVQWENPSSSI*