AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1272950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1272950 MtrunA17_Chr8g0338511 96.941 425 13 0 22 446 28 452 0.0 855
Msa1272950 MtrunA17_Chr8g0338471 78.960 423 84 2 16 437 17 435 0.0 699
Msa1272950 MtrunA17_Chr8g0338501 76.347 427 96 2 21 446 51 473 0.0 676
Msa1272950 MtrunA17_Chr8g0338521 70.868 357 93 5 41 394 12 360 2.33e-175 495
Msa1272950 MtrunA17_Chr8g0338531 67.324 355 93 4 87 434 8 346 3.29e-158 465
Msa1272950 MtrunA17_Chr2g0311541 43.218 435 241 6 11 442 3 434 3.40e-119 366
Msa1272950 MtrunA17_Chr2g0311551 44.096 415 227 5 27 440 259 669 1.04e-118 370
Msa1272950 MtrunA17_Chr8g0338481 68.201 239 51 1 192 430 1 214 1.94e-115 339
Msa1272950 MtrunA17_Chr2g0311521 43.165 417 232 5 28 442 261 674 2.46e-112 354
Msa1272950 MtrunA17_Chr5g0399591 41.646 413 215 12 45 441 40 442 1.54e-101 320
Msa1272950 MtrunA17_Chr5g0399561 38.745 462 253 14 1 446 1 448 1.69e-98 312
Msa1272950 MtrunA17_Chr2g0311511 41.311 351 190 9 5 341 9 357 4.18e-81 265
Msa1272950 MtrunA17_Chr5g0394381 33.256 430 244 20 28 445 24 422 5.35e-47 172
Msa1272950 MtrunA17_Chr4g0063701 29.911 448 267 19 8 431 13 437 2.63e-40 154
Msa1272950 MtrunA17_Chr4g0063691 30.858 431 259 16 8 417 16 428 2.31e-36 142
Msa1272950 MtrunA17_Chr0c04g0492001 28.235 425 271 16 31 443 29 431 6.96e-33 132
Msa1272950 MtrunA17_Chr0c04g0492031 28.235 425 271 16 31 443 29 431 2.18e-32 130
Msa1272950 MtrunA17_Chr3g0134291 28.235 425 271 16 31 443 29 431 2.46e-32 130
Msa1272950 MtrunA17_Chr3g0106201 27.619 420 268 12 33 439 24 420 1.37e-31 128
Msa1272950 MtrunA17_Chr3g0106141 28.352 455 284 15 1 442 1 426 2.07e-31 127
Msa1272950 MtrunA17_Chr3g0106131 27.765 425 274 10 33 446 24 426 2.87e-30 124
Msa1272950 MtrunA17_Chr3g0106121 28.502 414 261 12 33 433 24 415 1.21e-29 122
Msa1272950 MtrunA17_Chr3g0106151 27.603 413 246 14 44 439 38 414 1.77e-28 119
Msa1272950 MtrunA17_Chr3g0106211 29.255 376 229 13 33 395 27 378 1.82e-28 119
Msa1272950 MtrunA17_Chr1g0202331 25.263 475 292 20 1 436 1 451 9.76e-28 116
Msa1272950 MtrunA17_Chr7g0257821 28.205 390 233 16 45 423 45 398 2.87e-27 115
Msa1272950 MtrunA17_Chr3g0106221 27.614 373 226 10 44 396 37 385 8.40e-26 110
Msa1272950 MtrunA17_Chr4g0053161 24.890 454 289 18 1 435 21 441 1.60e-21 97.8
Msa1272950 MtrunA17_Chr3g0106191 28.883 367 219 13 82 439 2 335 2.22e-21 97.1
Msa1272950 MtrunA17_Chr7g0237341 26.044 407 258 16 44 435 43 421 1.37e-20 94.7
Msa1272950 MtrunA17_Chr7g0237351 23.581 458 305 17 6 446 5 434 1.90e-20 94.4
Msa1272950 MtrunA17_Chr4g0042351 26.044 407 255 16 4 395 2 377 2.43e-20 94.0
Msa1272950 MtrunA17_Chr4g0042391 26.355 406 255 15 4 395 2 377 3.92e-20 93.6
Msa1272950 MtrunA17_Chr2g0323301 25.768 423 246 18 4 397 9 392 4.10e-20 93.6
Msa1272950 MtrunA17_Chr7g0237331 24.631 406 261 12 44 433 44 420 7.64e-20 92.4
Msa1272950 MtrunA17_Chr3g0137741 27.559 381 201 22 43 401 52 379 1.05e-17 85.9
Msa1272950 MtrunA17_Chr4g0023071 23.990 421 261 15 10 400 6 397 1.50e-17 85.5
Msa1272950 MtrunA17_Chr8g0361311 27.778 378 215 17 44 396 39 383 1.80e-17 84.3
Msa1272950 MtrunA17_Chr2g0280701 25.666 413 242 20 13 396 6 382 2.01e-17 85.1
Msa1272950 MtrunA17_Chr8g0361251 27.513 378 216 17 44 396 39 383 8.50e-17 83.2
Msa1272950 MtrunA17_Chr3g0098791 24.181 397 240 16 23 397 29 386 2.29e-16 81.6
Msa1272950 MtrunA17_Chr4g0042381 24.938 405 261 15 6 395 1 377 2.42e-16 81.6
Msa1272950 MtrunA17_Chr3g0134321 33.766 154 95 4 44 192 38 189 2.93e-16 81.3
Msa1272950 MtrunA17_Chr2g0280801 23.918 485 285 21 9 445 4 452 3.68e-16 81.3
Msa1272950 MtrunA17_Chr2g0280751 23.457 405 258 14 22 406 28 400 6.44e-16 80.5
Msa1272950 MtrunA17_Chr3g0084621 25.397 378 224 17 44 397 44 387 7.61e-16 80.1
Msa1272950 MtrunA17_Chr4g0048691 25.547 411 210 13 44 405 61 424 9.45e-16 79.3
Msa1272950 MtrunA17_Chr8g0361301 26.862 376 220 15 44 396 40 383 1.85e-15 79.0
Msa1272950 MtrunA17_Chr2g0280731 27.378 347 209 14 9 338 14 334 2.26e-15 78.6
Msa1272950 MtrunA17_Chr2g0280681 25.648 386 208 18 44 395 43 383 2.32e-15 78.6
Msa1272950 MtrunA17_Chr2g0318811 25.791 411 243 17 9 396 7 378 2.33e-15 78.6
Msa1272950 MtrunA17_Chr8g0361441 24.020 408 279 12 1 397 1 388 2.43e-15 78.6
Msa1272950 MtrunA17_Chr2g0280691 26.221 389 232 18 32 397 27 383 4.56e-15 77.8
Msa1272950 MtrunA17_Chr5g0428111 26.667 390 238 19 32 400 31 393 5.53e-15 77.4
Msa1272950 MtrunA17_Chr7g0236161 23.666 431 261 19 44 436 44 444 6.43e-15 77.4
Msa1272950 MtrunA17_Chr7g0236201 23.666 431 261 19 44 436 44 444 6.58e-15 77.4
Msa1272950 MtrunA17_Chr3g0093161 24.868 378 249 14 32 396 25 380 7.38e-15 77.0
Msa1272950 MtrunA17_Chr4g0048721 25.164 457 284 20 5 433 11 437 1.15e-14 75.9
Msa1272950 MtrunA17_Chr3g0084411 24.173 393 231 15 44 406 41 396 2.10e-14 75.9
Msa1272950 MtrunA17_Chr8g0361261 26.596 376 221 15 44 396 71 414 2.25e-14 75.5
Msa1272950 MtrunA17_Chr3g0084651 23.342 377 232 14 44 395 41 385 2.61e-14 74.7
Msa1272950 MtrunA17_Chr7g0236121 23.448 435 269 18 44 444 44 448 2.74e-14 75.5
Msa1272950 MtrunA17_Chr1g0149381 26.316 418 239 20 43 441 57 424 2.90e-14 75.1
Msa1272950 MtrunA17_Chr3g0084681 24.409 381 224 16 44 397 44 387 4.00e-14 74.7
Msa1272950 MtrunA17_Chr2g0323241 31.841 201 118 8 6 196 9 200 5.26e-14 73.9
Msa1272950 MtrunA17_Chr3g0078531 25.768 423 256 20 3 395 13 407 6.13e-14 74.3
Msa1272950 MtrunA17_Chr2g0280791 24.598 435 265 17 1 406 1 401 6.57e-14 74.3
Msa1272950 MtrunA17_Chr2g0318841 24.029 412 255 17 6 396 4 378 7.81e-14 73.9
Msa1272950 MtrunA17_Chr7g0236641 23.195 457 283 20 8 434 14 432 1.16e-13 73.6
Msa1272950 MtrunA17_Chr2g0280711 25.131 382 231 18 40 396 38 389 1.30e-13 73.2
Msa1272950 MtrunA17_Chr3g0084431 23.389 419 251 17 5 397 7 381 1.33e-13 73.2
Msa1272950 MtrunA17_Chr3g0084491 25.876 371 230 15 44 397 57 399 2.38e-13 72.4
Msa1272950 MtrunA17_Chr4g0048761 25.260 384 225 16 44 397 56 407 2.85e-13 72.0
Msa1272950 MtrunA17_Chr2g0318831 38.849 139 69 6 44 175 41 170 3.88e-13 71.6
Msa1272950 MtrunA17_Chr2g0333091 26.238 404 241 17 43 431 50 411 4.79e-13 71.2
Msa1272950 MtrunA17_Chr7g0237391 23.342 407 270 15 44 435 42 421 7.02e-13 70.9
Msa1272950 MtrunA17_Chr4g0042361 23.483 379 236 15 44 396 74 424 9.55e-13 70.5
Msa1272950 MtrunA17_Chr8g0340091 31.361 169 101 7 29 185 80 245 1.00e-12 70.5
Msa1272950 MtrunA17_Chr4g0042421 23.020 404 265 15 13 395 7 385 1.05e-12 70.1
Msa1272950 MtrunA17_Chr8g0361431 26.347 334 208 13 26 348 34 340 1.15e-12 70.1
Msa1272950 MtrunA17_Chr2g0318171 25.783 415 245 21 41 440 53 419 1.16e-12 70.1
Msa1272950 MtrunA17_Chr4g0048651 26.606 327 194 15 44 348 61 363 2.06e-12 68.9
Msa1272950 MtrunA17_Chr3g0078541 26.702 382 223 21 44 395 52 406 2.70e-12 68.9
Msa1272950 MtrunA17_Chr8g0340061 31.361 169 101 7 29 185 27 192 3.00e-12 68.6
Msa1272950 MtrunA17_Chr1g0205551 29.252 147 90 6 126 267 1 138 4.27e-12 63.5
Msa1272950 MtrunA17_Chr3g0106161 30.055 183 106 5 258 435 90 255 5.12e-12 68.2
Msa1272950 MtrunA17_Chr8g0340071 29.139 151 96 4 44 185 44 192 1.67e-11 66.6
Msa1272950 MtrunA17_Chr4g0042341 23.571 420 263 16 5 396 3 392 1.92e-11 66.2
Msa1272950 MtrunA17_Chr4g0048641 29.373 303 165 16 44 322 63 340 2.08e-11 66.2
Msa1272950 MtrunA17_Chr3g0084451 24.603 378 224 15 44 397 44 384 2.11e-11 66.2
Msa1272950 MtrunA17_Chr3g0114851 29.392 296 161 15 30 307 28 293 2.21e-11 66.2
Msa1272950 MtrunA17_Chr4g0023221 22.829 403 243 17 44 407 62 435 2.60e-11 66.2
Msa1272950 MtrunA17_Chr4g0048801 40.000 135 62 6 46 165 39 169 5.67e-11 64.7
Msa1272950 MtrunA17_Chr2g0315841 36.585 123 75 2 79 198 93 215 7.40e-11 63.9
Msa1272950 MtrunA17_Chr7g0236651 23.246 456 273 18 8 429 12 424 7.41e-11 64.3
Msa1272950 MtrunA17_Chr2g0315851 36.585 123 75 2 79 198 93 215 7.98e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1272950 AT5G24080.2 27.891 441 267 21 24 432 26 447 6.19e-30 123
Msa1272950 AT2G41890.1 27.206 408 239 17 10 400 14 380 1.08e-19 92.4
Msa1272950 AT1G65790.3 24.433 397 247 12 20 397 22 384 4.89e-18 87.0
Msa1272950 AT1G65790.2 24.433 397 247 12 20 397 22 384 4.89e-18 87.0
Msa1272950 AT3G12000.1 26.178 382 239 13 35 396 40 398 5.46e-18 86.3
Msa1272950 AT1G65790.1 24.685 397 246 12 20 397 22 384 6.12e-18 87.0
Msa1272950 AT1G11340.2 27.297 381 213 16 44 395 102 447 2.45e-17 85.1
Msa1272950 AT1G11340.1 27.297 381 213 16 44 395 34 379 2.56e-17 85.1
Msa1272950 AT1G11340.3 27.297 381 213 16 44 395 102 447 2.89e-17 85.1
Msa1272950 AT1G34300.1 24.873 394 246 17 26 410 25 377 6.99e-17 84.0
Msa1272950 AT4G21390.2 25.231 432 264 16 6 411 11 409 1.53e-16 82.8
Msa1272950 AT4G21390.1 25.231 432 264 16 6 411 11 409 1.66e-16 82.8
Msa1272950 AT1G11330.3 25.897 390 246 15 39 406 42 410 2.89e-16 82.0
Msa1272950 AT1G11330.1 25.897 390 246 15 39 406 42 410 3.03e-16 82.0
Msa1272950 AT1G11330.2 25.897 390 246 15 39 406 42 410 3.06e-16 82.0
Msa1272950 AT1G11410.1 24.346 382 223 13 44 395 37 382 2.36e-15 79.0
Msa1272950 AT1G11410.3 24.595 370 237 13 44 395 13 358 2.76e-15 79.0
Msa1272950 AT1G11410.4 24.346 382 223 13 44 395 44 389 2.96e-15 79.0
Msa1272950 AT4G21380.2 22.980 396 258 13 20 397 24 390 3.19e-15 78.6
Msa1272950 AT4G21380.1 22.980 396 258 13 20 397 24 390 7.97e-15 77.4
Msa1272950 AT1G11300.1 23.990 396 251 16 34 406 32 400 8.79e-15 77.4
Msa1272950 AT1G11300.2 24.121 398 248 16 34 406 32 400 9.77e-15 77.0
Msa1272950 AT1G11280.2 22.348 443 252 17 8 411 16 405 1.40e-14 76.6
Msa1272950 AT1G11280.3 22.348 443 252 17 8 411 16 405 1.44e-14 76.6
Msa1272950 AT1G11280.5 22.348 443 252 17 8 411 16 405 1.48e-14 76.3
Msa1272950 AT1G11280.1 22.348 443 252 17 8 411 26 415 1.54e-14 76.6
Msa1272950 AT1G11280.4 22.348 443 252 17 8 411 26 415 1.95e-14 76.3
Msa1272950 AT1G61360.1 23.487 413 248 18 34 411 19 398 8.29e-14 74.3
Msa1272950 AT1G11303.1 24.505 404 251 17 34 411 32 407 2.04e-13 73.2
Msa1272950 AT1G78850.1 23.342 377 248 15 54 407 52 410 2.23e-13 72.0
Msa1272950 AT1G65800.2 24.468 376 241 14 39 397 39 388 2.65e-13 72.4
Msa1272950 AT1G78860.1 23.016 378 248 15 54 407 52 410 2.96e-13 71.6
Msa1272950 AT1G65800.1 24.468 376 241 14 39 397 39 388 3.57e-13 72.4
Msa1272950 AT1G16905.1 24.793 363 223 17 62 407 69 398 3.61e-12 68.6
Msa1272950 AT1G61400.1 22.864 433 271 16 1 411 15 406 4.61e-12 68.9
Msa1272950 AT1G61400.2 22.864 433 271 16 1 411 15 406 6.52e-12 68.2
Msa1272950 AT1G61550.1 23.114 411 262 17 26 411 10 391 7.16e-12 68.2
Msa1272950 AT1G11350.1 26.492 419 217 22 33 406 26 398 7.40e-12 68.2
Msa1272950 AT4G32300.1 33.858 127 78 3 43 168 47 168 1.59e-11 67.0
Msa1272950 AT1G61380.1 23.155 393 249 17 44 411 35 399 1.98e-11 66.6
Msa1272950 AT5G24080.3 25.223 337 204 18 127 432 1 320 2.38e-11 66.6
Msa1272950 AT5G24080.1 25.223 337 204 18 127 432 1 320 2.38e-11 66.6
Msa1272950 AT4G27290.2 23.923 418 260 15 2 396 3 385 3.74e-11 65.9
Msa1272950 AT4G27290.1 23.923 418 260 15 2 396 3 385 3.95e-11 65.9
Msa1272950 AT1G78830.1 25.723 346 209 14 79 395 94 420 6.07e-11 64.7
Msa1272950 AT1G61610.2 23.934 422 275 17 13 411 15 413 8.99e-11 64.7
Msa1272950 AT1G61610.1 23.934 422 275 17 13 411 15 413 9.51e-11 64.7

Find 91 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATGGTTGCTTTCACCTTC+TGG 0.162410 8_3:+6604592 Msa1272950:CDS
ATCAGGGTACTTGTATGTTT+TGG 0.196804 8_3:+6605149 Msa1272950:CDS
CTACACTGCTCTTCAGTAAA+AGG 0.260924 8_3:-6605603 None:intergenic
ACCAATGGCTATGGTACTTT+TGG 0.266017 8_3:-6604539 None:intergenic
AGTATAAGTACATATATTAA+AGG 0.280779 8_3:-6605334 None:intergenic
CCTTCTGGTGACTTTGCCTT+TGG 0.284286 8_3:+6604607 Msa1272950:CDS
TCAATCAGTGAGTAATGTTT+TGG 0.296727 8_3:-6605435 None:intergenic
CCTTCTCAAGTTGTGGATAA+AGG 0.297314 8_3:+6604934 Msa1272950:CDS
CACTGGCAACTTTGTGCTTC+AGG 0.298549 8_3:+6604855 Msa1272950:CDS
TCACTCTTAGTTGAACTCTT+AGG 0.318025 8_3:-6605285 None:intergenic
TCCATAACCTGACACCATTT+GGG 0.321032 8_3:-6604786 None:intergenic
AAAGCTTTCTTCAAGGCTTA+AGG 0.324891 8_3:+6604960 Msa1272950:CDS
CCCCAAATGGTGTCAGGTTA+TGG 0.333819 8_3:+6604785 Msa1272950:CDS
TTCCATAACCTGACACCATT+TGG 0.334304 8_3:-6604787 None:intergenic
TATAATAGCTTCTGCACTTT+GGG 0.334674 8_3:+6605384 Msa1272950:CDS
CAGCTGCCATATGGATCATT+AGG 0.345935 8_3:-6605459 None:intergenic
GCACATCCTTGGATGAAATC+TGG 0.356014 8_3:-6605486 None:intergenic
CAATTGGTCTTTGACAAATC+AGG 0.365276 8_3:+6605132 Msa1272950:CDS
TGACAGGTATGGTGGAACTA+TGG 0.376095 8_3:-6605779 None:intergenic
CACAACTTGAGAAGGCAATA+AGG 0.378374 8_3:-6604926 None:intergenic
AAGAAGTTACCACTTTCAAA+TGG 0.384175 8_3:+6605693 Msa1272950:CDS
CATTCTATTAATTTACCATC+TGG 0.385953 8_3:+6605045 Msa1272950:CDS
AAGGAAGAAAGCTTTCTTCA+AGG 0.414940 8_3:+6604953 Msa1272950:CDS
ATCAAGTGCTGGAGCTCAAT+TGG 0.420184 8_3:+6605116 Msa1272950:CDS
AGAGTTGATGCAACTCTTAA+TGG 0.425621 8_3:+6605717 Msa1272950:CDS
TCAGGTTAGGTGATAGTTGT+TGG 0.437474 8_3:+6605667 Msa1272950:CDS
TCTGGCTTGCAGCTGCCATA+TGG 0.441887 8_3:-6605468 None:intergenic
ATCAGTGAGTAGAGGAGAAA+GGG 0.444345 8_3:-6604487 None:intergenic
AGCTCCAGCACTTGATGTAC+TGG 0.446907 8_3:-6605109 None:intergenic
GTGGAACTCACTGCCAATGA+TGG 0.454151 8_3:+6604748 Msa1272950:CDS
CTTATTGCCTTCTCAAGTTG+TGG 0.458043 8_3:+6604927 Msa1272950:CDS
ACTGTTGTGTGGTATGCTAA+TGG 0.458658 8_3:+6604697 Msa1272950:CDS
GTGAAGGTTGGACCACAGTA+TGG 0.468347 8_3:+6605304 Msa1272950:CDS
GATCATCTTCTGCACATCCT+TGG 0.474213 8_3:-6605497 None:intergenic
ATTGATCCTAATGATCCATA+TGG 0.477623 8_3:+6605453 Msa1272950:CDS
ATTTAATACTAATTTGTGAC+AGG 0.481714 8_3:-6605795 None:intergenic
AAGGAGACAGATTTCAGTAA+AGG 0.482797 8_3:+6604979 Msa1272950:CDS
TACTTTGAAAGTAATACTGT+TGG 0.483409 8_3:+6605084 Msa1272950:CDS
ATATAATAGCTTCTGCACTT+TGG 0.487312 8_3:+6605383 Msa1272950:CDS
GTATAAGTACATATATTAAA+GGG 0.488197 8_3:-6605333 None:intergenic
CCTTTATCCACAACTTGAGA+AGG 0.492964 8_3:-6604934 None:intergenic
AGAAGTTACCACTTTCAAAT+GGG 0.494879 8_3:+6605694 Msa1272950:CDS
AGTTAGCACCAACCCATCAT+TGG 0.498106 8_3:-6604761 None:intergenic
GCAGTGTAGGAAATCTTGTA+TGG 0.504417 8_3:+6605617 Msa1272950:CDS
AATCAGTGAGTAGAGGAGAA+AGG 0.506599 8_3:-6604488 None:intergenic
ATACTAATTTGTGACAGGTA+TGG 0.507981 8_3:-6605790 None:intergenic
GGATGATTGTTTGTGTTCTG+TGG 0.510059 8_3:+6605638 Msa1272950:CDS
AAAAGAATCACCAATGGCTA+TGG 0.516781 8_3:-6604548 None:intergenic
AGTGCAGGTAGTGGTGTTTG+TGG 0.518931 8_3:+6605360 Msa1272950:CDS
TAACTTCCCCAAATGGTGTC+AGG 0.521731 8_3:+6604779 Msa1272950:CDS
TATCAGATTATGTGCTTCAA+AGG 0.523234 8_3:+6605580 Msa1272950:CDS
TGCAACTCTTAATGGTGCTA+AGG 0.523300 8_3:+6605725 Msa1272950:CDS
TTGGTGCTAACTTCCCCAAA+TGG 0.527112 8_3:+6604772 Msa1272950:CDS
AATTGGTCTTTGACAAATCA+GGG 0.536218 8_3:+6605133 Msa1272950:CDS
TGAAGCACATAATCTGATAG+AGG 0.536988 8_3:-6605576 None:intergenic
GGTTTGAGCTACAGCACAGA+TGG 0.537672 8_3:-6604518 None:intergenic
AGACAGATTTCAGTAAAGGA+AGG 0.543432 8_3:+6604983 Msa1272950:CDS
GGATCCAGTACATCAAGTGC+TGG 0.549542 8_3:+6605105 Msa1272950:CDS
GGAGACAGTCCTGCACCAAA+AGG 0.549672 8_3:+6604718 Msa1272950:CDS
GACAGGTATGGTGGAACTAT+GGG 0.550857 8_3:-6605778 None:intergenic
TCAACTCTCCCATTTGAAAG+TGG 0.563194 8_3:-6605702 None:intergenic
TGCACCAAAAGGATCAAAAG+TGG 0.563251 8_3:+6604729 Msa1272950:CDS
ACCAAAAGTACCATAGCCAT+TGG 0.565235 8_3:+6604538 Msa1272950:CDS
TATACTGTTAGTGCAGGTAG+TGG 0.565930 8_3:+6605351 Msa1272950:CDS
AAAAGATTAGTGTCTTTGAG+TGG 0.569176 8_3:-6604637 None:intergenic
AAGCAACCATGGAGATGTGC+TGG 0.569700 8_3:-6604581 None:intergenic
ATGGTAAATTCAACAGTCTG+TGG 0.569947 8_3:+6604878 Msa1272950:CDS
TGCAAGCCAGATTTCATCCA+AGG 0.573649 8_3:+6605480 Msa1272950:CDS
GGCAACTTTGTGCTTCAGGA+TGG 0.577553 8_3:+6604859 Msa1272950:CDS
TGTACTTATACTGTTAGTGC+AGG 0.578443 8_3:+6605345 Msa1272950:CDS
CGCGGTGTATTGAATGACAC+TGG 0.581627 8_3:+6604838 Msa1272950:CDS
CTAATTTGTGACAGGTATGG+TGG 0.587677 8_3:-6605787 None:intergenic
TGGTAAATTCAACAGTCTGT+GGG 0.591832 8_3:+6604879 Msa1272950:CDS
CACAAGCCAGCACATCTCCA+TGG 0.597254 8_3:+6604575 Msa1272950:CDS
CCAGAAGGTGAAAGCAACCA+TGG 0.600409 8_3:-6604592 None:intergenic
GAAGGCAATAAGGTGTCACT+AGG 0.602021 8_3:-6604916 None:intergenic
ACTCACTGCCAATGATGGGT+TGG 0.610259 8_3:+6604753 Msa1272950:CDS
AAGAGTTCAACTAAGAGTGA+AGG 0.613595 8_3:+6605288 Msa1272950:CDS
GTTCAACTAAGAGTGAAGGT+TGG 0.619862 8_3:+6605292 Msa1272950:CDS
CTCAATGTTAAAGTTTCTCG+CGG 0.620103 8_3:+6604820 Msa1272950:CDS
TTTCCGAGAAAACTGTTGTG+TGG 0.627609 8_3:+6604686 Msa1272950:CDS
TGCAGTAAAAGAATCACCAA+TGG 0.629150 8_3:-6604554 None:intergenic
TGGAACTCACTGCCAATGAT+GGG 0.629211 8_3:+6604749 Msa1272950:CDS
GTCAGGTTATGGAATACTGA+AGG 0.629411 8_3:+6604796 Msa1272950:CDS
CCAAAGGCAAAGTCACCAGA+AGG 0.636933 8_3:-6604607 None:intergenic
CCATAACCTGACACCATTTG+GGG 0.639256 8_3:-6604785 None:intergenic
ATTGCAGAATCAGTGAGTAG+AGG 0.647746 8_3:-6604495 None:intergenic
TTTGAGTGGAAGAAAACCAA+AGG 0.654690 8_3:-6604623 None:intergenic
AGGTATGGTGGAACTATGGG+AGG 0.656973 8_3:-6605775 None:intergenic
TGCTCTAAGATAAAATTGTG+TGG 0.657315 8_3:-6605223 None:intergenic
AAAGGGCTTAGACCATACTG+TGG 0.757626 8_3:-6605316 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTATAAGTACATATATTAAA+GGG - chr8_3:6605336-6605355 None:intergenic 15.0%
!! AGTATAAGTACATATATTAA+AGG - chr8_3:6605337-6605356 None:intergenic 15.0%
!! GTATAAGTACATATATTAAA+GGG - chr8_3:6605336-6605355 None:intergenic 15.0%
!! AGTATAAGTACATATATTAA+AGG - chr8_3:6605337-6605356 None:intergenic 15.0%
!!! ATCTTTTTTTGCTTTCAATT+TGG + chr8_3:6604653-6604672 Msa1272950:CDS 20.0%
!!! ATCTTTTTTTGCTTTCAATT+TGG + chr8_3:6604653-6604672 Msa1272950:CDS 20.0%
! CATTCTATTAATTTACCATC+TGG + chr8_3:6605045-6605064 Msa1272950:CDS 25.0%
!! TTTTCATTAACAAAACCAGA+TGG - chr8_3:6605063-6605082 None:intergenic 25.0%
!! TACTTTGAAAGTAATACTGT+TGG + chr8_3:6605084-6605103 Msa1272950:CDS 25.0%
!! AGATCATTTCTCTTTTTACT+AGG - chr8_3:6605522-6605541 None:intergenic 25.0%
! CATTCTATTAATTTACCATC+TGG + chr8_3:6605045-6605064 Msa1272950:CDS 25.0%
!! TTTTCATTAACAAAACCAGA+TGG - chr8_3:6605063-6605082 None:intergenic 25.0%
!! TACTTTGAAAGTAATACTGT+TGG + chr8_3:6605084-6605103 Msa1272950:CDS 25.0%
!! AGATCATTTCTCTTTTTACT+AGG - chr8_3:6605522-6605541 None:intergenic 25.0%
AAAAGATTAGTGTCTTTGAG+TGG - chr8_3:6604640-6604659 None:intergenic 30.0%
! ACAGTTTTCTCGGAAATTTT+GGG - chr8_3:6604682-6604701 None:intergenic 30.0%
! AACAGTTTTCTCGGAAATTT+TGG - chr8_3:6604683-6604702 None:intergenic 30.0%
!!! GAACTTGTTTTACAAAGTGA+TGG + chr8_3:6605009-6605028 Msa1272950:CDS 30.0%
!! AATTGGTCTTTGACAAATCA+GGG + chr8_3:6605133-6605152 Msa1272950:CDS 30.0%
!! TGCTCTAAGATAAAATTGTG+TGG - chr8_3:6605226-6605245 None:intergenic 30.0%
! AGAGCAACTCTTAATTTTGA+TGG + chr8_3:6605240-6605259 Msa1272950:CDS 30.0%
ATATAATAGCTTCTGCACTT+TGG + chr8_3:6605383-6605402 Msa1272950:CDS 30.0%
TATAATAGCTTCTGCACTTT+GGG + chr8_3:6605384-6605403 Msa1272950:CDS 30.0%
! TCAATCAGTGAGTAATGTTT+TGG - chr8_3:6605438-6605457 None:intergenic 30.0%
ATTGATCCTAATGATCCATA+TGG + chr8_3:6605453-6605472 Msa1272950:CDS 30.0%
TATCAGATTATGTGCTTCAA+AGG + chr8_3:6605580-6605599 Msa1272950:CDS 30.0%
AAGAAGTTACCACTTTCAAA+TGG + chr8_3:6605693-6605712 Msa1272950:CDS 30.0%
AGAAGTTACCACTTTCAAAT+GGG + chr8_3:6605694-6605713 Msa1272950:CDS 30.0%
AAAAGATTAGTGTCTTTGAG+TGG - chr8_3:6604640-6604659 None:intergenic 30.0%
! ACAGTTTTCTCGGAAATTTT+GGG - chr8_3:6604682-6604701 None:intergenic 30.0%
! AACAGTTTTCTCGGAAATTT+TGG - chr8_3:6604683-6604702 None:intergenic 30.0%
!!! GAACTTGTTTTACAAAGTGA+TGG + chr8_3:6605009-6605028 Msa1272950:CDS 30.0%
!! AATTGGTCTTTGACAAATCA+GGG + chr8_3:6605133-6605152 Msa1272950:CDS 30.0%
!! TGCTCTAAGATAAAATTGTG+TGG - chr8_3:6605226-6605245 None:intergenic 30.0%
! AGAGCAACTCTTAATTTTGA+TGG + chr8_3:6605240-6605259 Msa1272950:CDS 30.0%
ATATAATAGCTTCTGCACTT+TGG + chr8_3:6605383-6605402 Msa1272950:CDS 30.0%
TATAATAGCTTCTGCACTTT+GGG + chr8_3:6605384-6605403 Msa1272950:CDS 30.0%
! TCAATCAGTGAGTAATGTTT+TGG - chr8_3:6605438-6605457 None:intergenic 30.0%
ATTGATCCTAATGATCCATA+TGG + chr8_3:6605453-6605472 Msa1272950:CDS 30.0%
TATCAGATTATGTGCTTCAA+AGG + chr8_3:6605580-6605599 Msa1272950:CDS 30.0%
AAGAAGTTACCACTTTCAAA+TGG + chr8_3:6605693-6605712 Msa1272950:CDS 30.0%
AGAAGTTACCACTTTCAAAT+GGG + chr8_3:6605694-6605713 Msa1272950:CDS 30.0%
AAAAGAATCACCAATGGCTA+TGG - chr8_3:6604551-6604570 None:intergenic 35.0%
TGCAGTAAAAGAATCACCAA+TGG - chr8_3:6604557-6604576 None:intergenic 35.0%
TTTGAGTGGAAGAAAACCAA+AGG - chr8_3:6604626-6604645 None:intergenic 35.0%
! ATACCACACAACAGTTTTCT+CGG - chr8_3:6604692-6604711 None:intergenic 35.0%
!! AGTTCCACTTTTGATCCTTT+TGG - chr8_3:6604736-6604755 None:intergenic 35.0%
CTCAATGTTAAAGTTTCTCG+CGG + chr8_3:6604820-6604839 Msa1272950:CDS 35.0%
ATGGTAAATTCAACAGTCTG+TGG + chr8_3:6604878-6604897 Msa1272950:CDS 35.0%
TGGTAAATTCAACAGTCTGT+GGG + chr8_3:6604879-6604898 Msa1272950:CDS 35.0%
AAGGAAGAAAGCTTTCTTCA+AGG + chr8_3:6604953-6604972 Msa1272950:CDS 35.0%
AAAGCTTTCTTCAAGGCTTA+AGG + chr8_3:6604960-6604979 Msa1272950:CDS 35.0%
AAGGAGACAGATTTCAGTAA+AGG + chr8_3:6604979-6604998 Msa1272950:CDS 35.0%
AGACAGATTTCAGTAAAGGA+AGG + chr8_3:6604983-6605002 Msa1272950:CDS 35.0%
!! CAATTGGTCTTTGACAAATC+AGG + chr8_3:6605132-6605151 Msa1272950:CDS 35.0%
!! ATCAGGGTACTTGTATGTTT+TGG + chr8_3:6605149-6605168 Msa1272950:CDS 35.0%
!! TCAGGGTACTTGTATGTTTT+GGG + chr8_3:6605150-6605169 Msa1272950:CDS 35.0%
TCACTCTTAGTTGAACTCTT+AGG - chr8_3:6605288-6605307 None:intergenic 35.0%
AAGAGTTCAACTAAGAGTGA+AGG + chr8_3:6605288-6605307 Msa1272950:CDS 35.0%
TGTACTTATACTGTTAGTGC+AGG + chr8_3:6605345-6605364 Msa1272950:CDS 35.0%
!! TGTTTTGGACACTGACATTT+TGG - chr8_3:6605423-6605442 None:intergenic 35.0%
!! AGATTTTGATCGACACTGAT+TGG + chr8_3:6605553-6605572 Msa1272950:CDS 35.0%
TGAAGCACATAATCTGATAG+AGG - chr8_3:6605579-6605598 None:intergenic 35.0%
!! AGAGTTGATGCAACTCTTAA+TGG + chr8_3:6605717-6605736 Msa1272950:CDS 35.0%
AAAAGAATCACCAATGGCTA+TGG - chr8_3:6604551-6604570 None:intergenic 35.0%
TGCAGTAAAAGAATCACCAA+TGG - chr8_3:6604557-6604576 None:intergenic 35.0%
TTTGAGTGGAAGAAAACCAA+AGG - chr8_3:6604626-6604645 None:intergenic 35.0%
! ATACCACACAACAGTTTTCT+CGG - chr8_3:6604692-6604711 None:intergenic 35.0%
!! AGTTCCACTTTTGATCCTTT+TGG - chr8_3:6604736-6604755 None:intergenic 35.0%
CTCAATGTTAAAGTTTCTCG+CGG + chr8_3:6604820-6604839 Msa1272950:CDS 35.0%
ATGGTAAATTCAACAGTCTG+TGG + chr8_3:6604878-6604897 Msa1272950:CDS 35.0%
TGGTAAATTCAACAGTCTGT+GGG + chr8_3:6604879-6604898 Msa1272950:CDS 35.0%
AAGGAAGAAAGCTTTCTTCA+AGG + chr8_3:6604953-6604972 Msa1272950:CDS 35.0%
AAAGCTTTCTTCAAGGCTTA+AGG + chr8_3:6604960-6604979 Msa1272950:CDS 35.0%
AAGGAGACAGATTTCAGTAA+AGG + chr8_3:6604979-6604998 Msa1272950:CDS 35.0%
AGACAGATTTCAGTAAAGGA+AGG + chr8_3:6604983-6605002 Msa1272950:CDS 35.0%
!! CAATTGGTCTTTGACAAATC+AGG + chr8_3:6605132-6605151 Msa1272950:CDS 35.0%
!! ATCAGGGTACTTGTATGTTT+TGG + chr8_3:6605149-6605168 Msa1272950:CDS 35.0%
!! TCAGGGTACTTGTATGTTTT+GGG + chr8_3:6605150-6605169 Msa1272950:CDS 35.0%
TCACTCTTAGTTGAACTCTT+AGG - chr8_3:6605288-6605307 None:intergenic 35.0%
AAGAGTTCAACTAAGAGTGA+AGG + chr8_3:6605288-6605307 Msa1272950:CDS 35.0%
TGTACTTATACTGTTAGTGC+AGG + chr8_3:6605345-6605364 Msa1272950:CDS 35.0%
!! TGTTTTGGACACTGACATTT+TGG - chr8_3:6605423-6605442 None:intergenic 35.0%
!! AGATTTTGATCGACACTGAT+TGG + chr8_3:6605553-6605572 Msa1272950:CDS 35.0%
TGAAGCACATAATCTGATAG+AGG - chr8_3:6605579-6605598 None:intergenic 35.0%
!! AGAGTTGATGCAACTCTTAA+TGG + chr8_3:6605717-6605736 Msa1272950:CDS 35.0%
ATCAGTGAGTAGAGGAGAAA+GGG - chr8_3:6604490-6604509 None:intergenic 40.0%
AATCAGTGAGTAGAGGAGAA+AGG - chr8_3:6604491-6604510 None:intergenic 40.0%
ATTGCAGAATCAGTGAGTAG+AGG - chr8_3:6604498-6604517 None:intergenic 40.0%
!! ACCAAAAGTACCATAGCCAT+TGG + chr8_3:6604538-6604557 Msa1272950:CDS 40.0%
! ACCAATGGCTATGGTACTTT+TGG - chr8_3:6604542-6604561 None:intergenic 40.0%
TTTCCGAGAAAACTGTTGTG+TGG + chr8_3:6604686-6604705 Msa1272950:CDS 40.0%
ACTGTTGTGTGGTATGCTAA+TGG + chr8_3:6604697-6604716 Msa1272950:CDS 40.0%
!! ACTTTTGATCCTTTTGGTGC+AGG - chr8_3:6604730-6604749 None:intergenic 40.0%
TGCACCAAAAGGATCAAAAG+TGG + chr8_3:6604729-6604748 Msa1272950:CDS 40.0%
TCCATAACCTGACACCATTT+GGG - chr8_3:6604789-6604808 None:intergenic 40.0%
TTCCATAACCTGACACCATT+TGG - chr8_3:6604790-6604809 None:intergenic 40.0%
GTCAGGTTATGGAATACTGA+AGG + chr8_3:6604796-6604815 Msa1272950:CDS 40.0%
CACAACTTGAGAAGGCAATA+AGG - chr8_3:6604929-6604948 None:intergenic 40.0%
! CTTATTGCCTTCTCAAGTTG+TGG + chr8_3:6604927-6604946 Msa1272950:CDS 40.0%
CCTTTATCCACAACTTGAGA+AGG - chr8_3:6604937-6604956 None:intergenic 40.0%
! CCTTCTCAAGTTGTGGATAA+AGG + chr8_3:6604934-6604953 Msa1272950:CDS 40.0%
GTTCAACTAAGAGTGAAGGT+TGG + chr8_3:6605292-6605311 Msa1272950:CDS 40.0%
TATACTGTTAGTGCAGGTAG+TGG + chr8_3:6605351-6605370 Msa1272950:CDS 40.0%
CTACACTGCTCTTCAGTAAA+AGG - chr8_3:6605606-6605625 None:intergenic 40.0%
! CTTTTACTGAAGAGCAGTGT+AGG + chr8_3:6605604-6605623 Msa1272950:CDS 40.0%
GCAGTGTAGGAAATCTTGTA+TGG + chr8_3:6605617-6605636 Msa1272950:CDS 40.0%
GGATGATTGTTTGTGTTCTG+TGG + chr8_3:6605638-6605657 Msa1272950:CDS 40.0%
!! TGTGTTCTGTGGCTATTTTC+AGG + chr8_3:6605649-6605668 Msa1272950:CDS 40.0%
!!! TCTGTGGCTATTTTCAGGTT+AGG + chr8_3:6605654-6605673 Msa1272950:CDS 40.0%
TCAGGTTAGGTGATAGTTGT+TGG + chr8_3:6605667-6605686 Msa1272950:CDS 40.0%
TCAACTCTCCCATTTGAAAG+TGG - chr8_3:6605705-6605724 None:intergenic 40.0%
! TGCAACTCTTAATGGTGCTA+AGG + chr8_3:6605725-6605744 Msa1272950:CDS 40.0%
! CTAATTTGTGACAGGTATGG+TGG - chr8_3:6605790-6605809 None:intergenic 40.0%
ATCAGTGAGTAGAGGAGAAA+GGG - chr8_3:6604490-6604509 None:intergenic 40.0%
AATCAGTGAGTAGAGGAGAA+AGG - chr8_3:6604491-6604510 None:intergenic 40.0%
ATTGCAGAATCAGTGAGTAG+AGG - chr8_3:6604498-6604517 None:intergenic 40.0%
!! ACCAAAAGTACCATAGCCAT+TGG + chr8_3:6604538-6604557 Msa1272950:CDS 40.0%
! ACCAATGGCTATGGTACTTT+TGG - chr8_3:6604542-6604561 None:intergenic 40.0%
TTTCCGAGAAAACTGTTGTG+TGG + chr8_3:6604686-6604705 Msa1272950:CDS 40.0%
ACTGTTGTGTGGTATGCTAA+TGG + chr8_3:6604697-6604716 Msa1272950:CDS 40.0%
!! ACTTTTGATCCTTTTGGTGC+AGG - chr8_3:6604730-6604749 None:intergenic 40.0%
TGCACCAAAAGGATCAAAAG+TGG + chr8_3:6604729-6604748 Msa1272950:CDS 40.0%
TCCATAACCTGACACCATTT+GGG - chr8_3:6604789-6604808 None:intergenic 40.0%
TTCCATAACCTGACACCATT+TGG - chr8_3:6604790-6604809 None:intergenic 40.0%
GTCAGGTTATGGAATACTGA+AGG + chr8_3:6604796-6604815 Msa1272950:CDS 40.0%
CACAACTTGAGAAGGCAATA+AGG - chr8_3:6604929-6604948 None:intergenic 40.0%
! CTTATTGCCTTCTCAAGTTG+TGG + chr8_3:6604927-6604946 Msa1272950:CDS 40.0%
CCTTTATCCACAACTTGAGA+AGG - chr8_3:6604937-6604956 None:intergenic 40.0%
! CCTTCTCAAGTTGTGGATAA+AGG + chr8_3:6604934-6604953 Msa1272950:CDS 40.0%
GTTCAACTAAGAGTGAAGGT+TGG + chr8_3:6605292-6605311 Msa1272950:CDS 40.0%
TATACTGTTAGTGCAGGTAG+TGG + chr8_3:6605351-6605370 Msa1272950:CDS 40.0%
CTACACTGCTCTTCAGTAAA+AGG - chr8_3:6605606-6605625 None:intergenic 40.0%
! CTTTTACTGAAGAGCAGTGT+AGG + chr8_3:6605604-6605623 Msa1272950:CDS 40.0%
GCAGTGTAGGAAATCTTGTA+TGG + chr8_3:6605617-6605636 Msa1272950:CDS 40.0%
GGATGATTGTTTGTGTTCTG+TGG + chr8_3:6605638-6605657 Msa1272950:CDS 40.0%
!! TGTGTTCTGTGGCTATTTTC+AGG + chr8_3:6605649-6605668 Msa1272950:CDS 40.0%
!!! TCTGTGGCTATTTTCAGGTT+AGG + chr8_3:6605654-6605673 Msa1272950:CDS 40.0%
TCAGGTTAGGTGATAGTTGT+TGG + chr8_3:6605667-6605686 Msa1272950:CDS 40.0%
TCAACTCTCCCATTTGAAAG+TGG - chr8_3:6605705-6605724 None:intergenic 40.0%
! TGCAACTCTTAATGGTGCTA+AGG + chr8_3:6605725-6605744 Msa1272950:CDS 40.0%
! CTAATTTGTGACAGGTATGG+TGG - chr8_3:6605790-6605809 None:intergenic 40.0%
TGGAACTCACTGCCAATGAT+GGG + chr8_3:6604749-6604768 Msa1272950:CDS 45.0%
AGTTAGCACCAACCCATCAT+TGG - chr8_3:6604764-6604783 None:intergenic 45.0%
!! TTGGTGCTAACTTCCCCAAA+TGG + chr8_3:6604772-6604791 Msa1272950:CDS 45.0%
TAACTTCCCCAAATGGTGTC+AGG + chr8_3:6604779-6604798 Msa1272950:CDS 45.0%
CCATAACCTGACACCATTTG+GGG - chr8_3:6604788-6604807 None:intergenic 45.0%
!! GAAGGCAATAAGGTGTCACT+AGG - chr8_3:6604919-6604938 None:intergenic 45.0%
!! ATCAAGTGCTGGAGCTCAAT+TGG + chr8_3:6605116-6605135 Msa1272950:CDS 45.0%
AAAGGGCTTAGACCATACTG+TGG - chr8_3:6605319-6605338 None:intergenic 45.0%
CAGCTGCCATATGGATCATT+AGG - chr8_3:6605462-6605481 None:intergenic 45.0%
TGCAAGCCAGATTTCATCCA+AGG + chr8_3:6605480-6605499 Msa1272950:CDS 45.0%
GCACATCCTTGGATGAAATC+TGG - chr8_3:6605489-6605508 None:intergenic 45.0%
GATCATCTTCTGCACATCCT+TGG - chr8_3:6605500-6605519 None:intergenic 45.0%
! GACAGGTATGGTGGAACTAT+GGG - chr8_3:6605781-6605800 None:intergenic 45.0%
! TGACAGGTATGGTGGAACTA+TGG - chr8_3:6605782-6605801 None:intergenic 45.0%
TGGAACTCACTGCCAATGAT+GGG + chr8_3:6604749-6604768 Msa1272950:CDS 45.0%
AGTTAGCACCAACCCATCAT+TGG - chr8_3:6604764-6604783 None:intergenic 45.0%
!! TTGGTGCTAACTTCCCCAAA+TGG + chr8_3:6604772-6604791 Msa1272950:CDS 45.0%
TAACTTCCCCAAATGGTGTC+AGG + chr8_3:6604779-6604798 Msa1272950:CDS 45.0%
CCATAACCTGACACCATTTG+GGG - chr8_3:6604788-6604807 None:intergenic 45.0%
!! GAAGGCAATAAGGTGTCACT+AGG - chr8_3:6604919-6604938 None:intergenic 45.0%
!! ATCAAGTGCTGGAGCTCAAT+TGG + chr8_3:6605116-6605135 Msa1272950:CDS 45.0%
AAAGGGCTTAGACCATACTG+TGG - chr8_3:6605319-6605338 None:intergenic 45.0%
CAGCTGCCATATGGATCATT+AGG - chr8_3:6605462-6605481 None:intergenic 45.0%
TGCAAGCCAGATTTCATCCA+AGG + chr8_3:6605480-6605499 Msa1272950:CDS 45.0%
GCACATCCTTGGATGAAATC+TGG - chr8_3:6605489-6605508 None:intergenic 45.0%
GATCATCTTCTGCACATCCT+TGG - chr8_3:6605500-6605519 None:intergenic 45.0%
! GACAGGTATGGTGGAACTAT+GGG - chr8_3:6605781-6605800 None:intergenic 45.0%
! TGACAGGTATGGTGGAACTA+TGG - chr8_3:6605782-6605801 None:intergenic 45.0%
GGTTTGAGCTACAGCACAGA+TGG - chr8_3:6604521-6604540 None:intergenic 50.0%
AAGCAACCATGGAGATGTGC+TGG - chr8_3:6604584-6604603 None:intergenic 50.0%
CCAGAAGGTGAAAGCAACCA+TGG - chr8_3:6604595-6604614 None:intergenic 50.0%
! CCATGGTTGCTTTCACCTTC+TGG + chr8_3:6604592-6604611 Msa1272950:CDS 50.0%
CCAAAGGCAAAGTCACCAGA+AGG - chr8_3:6604610-6604629 None:intergenic 50.0%
CCTTCTGGTGACTTTGCCTT+TGG + chr8_3:6604607-6604626 Msa1272950:CDS 50.0%
GTGGAACTCACTGCCAATGA+TGG + chr8_3:6604748-6604767 Msa1272950:CDS 50.0%
!! ACTCACTGCCAATGATGGGT+TGG + chr8_3:6604753-6604772 Msa1272950:CDS 50.0%
! CCCCAAATGGTGTCAGGTTA+TGG + chr8_3:6604785-6604804 Msa1272950:CDS 50.0%
CGCGGTGTATTGAATGACAC+TGG + chr8_3:6604838-6604857 Msa1272950:CDS 50.0%
CACTGGCAACTTTGTGCTTC+AGG + chr8_3:6604855-6604874 Msa1272950:CDS 50.0%
GGCAACTTTGTGCTTCAGGA+TGG + chr8_3:6604859-6604878 Msa1272950:CDS 50.0%
GGATCCAGTACATCAAGTGC+TGG + chr8_3:6605105-6605124 Msa1272950:CDS 50.0%
AGCTCCAGCACTTGATGTAC+TGG - chr8_3:6605112-6605131 None:intergenic 50.0%
GTGAAGGTTGGACCACAGTA+TGG + chr8_3:6605304-6605323 Msa1272950:CDS 50.0%
! AGTGCAGGTAGTGGTGTTTG+TGG + chr8_3:6605360-6605379 Msa1272950:CDS 50.0%
! AGGTATGGTGGAACTATGGG+AGG - chr8_3:6605778-6605797 None:intergenic 50.0%
GGTTTGAGCTACAGCACAGA+TGG - chr8_3:6604521-6604540 None:intergenic 50.0%
AAGCAACCATGGAGATGTGC+TGG - chr8_3:6604584-6604603 None:intergenic 50.0%
CCAGAAGGTGAAAGCAACCA+TGG - chr8_3:6604595-6604614 None:intergenic 50.0%
! CCATGGTTGCTTTCACCTTC+TGG + chr8_3:6604592-6604611 Msa1272950:CDS 50.0%
CCAAAGGCAAAGTCACCAGA+AGG - chr8_3:6604610-6604629 None:intergenic 50.0%
CCTTCTGGTGACTTTGCCTT+TGG + chr8_3:6604607-6604626 Msa1272950:CDS 50.0%
GTGGAACTCACTGCCAATGA+TGG + chr8_3:6604748-6604767 Msa1272950:CDS 50.0%
!! ACTCACTGCCAATGATGGGT+TGG + chr8_3:6604753-6604772 Msa1272950:CDS 50.0%
! CCCCAAATGGTGTCAGGTTA+TGG + chr8_3:6604785-6604804 Msa1272950:CDS 50.0%
CGCGGTGTATTGAATGACAC+TGG + chr8_3:6604838-6604857 Msa1272950:CDS 50.0%
CACTGGCAACTTTGTGCTTC+AGG + chr8_3:6604855-6604874 Msa1272950:CDS 50.0%
GGCAACTTTGTGCTTCAGGA+TGG + chr8_3:6604859-6604878 Msa1272950:CDS 50.0%
GGATCCAGTACATCAAGTGC+TGG + chr8_3:6605105-6605124 Msa1272950:CDS 50.0%
AGCTCCAGCACTTGATGTAC+TGG - chr8_3:6605112-6605131 None:intergenic 50.0%
GTGAAGGTTGGACCACAGTA+TGG + chr8_3:6605304-6605323 Msa1272950:CDS 50.0%
! AGTGCAGGTAGTGGTGTTTG+TGG + chr8_3:6605360-6605379 Msa1272950:CDS 50.0%
! AGGTATGGTGGAACTATGGG+AGG - chr8_3:6605778-6605797 None:intergenic 50.0%
CACAAGCCAGCACATCTCCA+TGG + chr8_3:6604575-6604594 Msa1272950:CDS 55.0%
GGAGACAGTCCTGCACCAAA+AGG + chr8_3:6604718-6604737 Msa1272950:CDS 55.0%
! TCTGGCTTGCAGCTGCCATA+TGG - chr8_3:6605471-6605490 None:intergenic 55.0%
CACAAGCCAGCACATCTCCA+TGG + chr8_3:6604575-6604594 Msa1272950:CDS 55.0%
GGAGACAGTCCTGCACCAAA+AGG + chr8_3:6604718-6604737 Msa1272950:CDS 55.0%
! TCTGGCTTGCAGCTGCCATA+TGG - chr8_3:6605471-6605490 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 6604469 6605809 6604469 ID=Msa1272950;Name=Msa1272950
chr8_3 mRNA 6604469 6605809 6604469 ID=Msa1272950-mRNA-1;Parent=Msa1272950;Name=Msa1272950-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|-1|0|1|-1|1|1|0|446
chr8_3 exon 6604469 6605809 6604469 ID=Msa1272950-mRNA-1:exon:2524;Parent=Msa1272950-mRNA-1
chr8_3 CDS 6604469 6605809 6604469 ID=Msa1272950-mRNA-1:cds;Parent=Msa1272950-mRNA-1
Gene Sequence

>Msa1272950

ATGGCTTCTTCTTTGCTTCCCTTTCTCCTCTACTCACTGATTCTGCAATCCATCTGTGCTGTAGCTCAAACCAAAAGTACCATAGCCATTGGTGATTCTTTTACTGCACAAGCCAGCACATCTCCATGGTTGCTTTCACCTTCTGGTGACTTTGCCTTTGGTTTTCTTCCACTCAAAGACACTAATCTTTTTTTGCTTTCAATTTGGTATCCCAAAATTTCCGAGAAAACTGTTGTGTGGTATGCTAATGGAGACAGTCCTGCACCAAAAGGATCAAAAGTGGAACTCACTGCCAATGATGGGTTGGTGCTAACTTCCCCAAATGGTGTCAGGTTATGGAATACTGAAGGACTCAATGTTAAAGTTTCTCGCGGTGTATTGAATGACACTGGCAACTTTGTGCTTCAGGATGGTAAATTCAACAGTCTGTGGGAGACTTTCAAGTTTCCTAGTGACACCTTATTGCCTTCTCAAGTTGTGGATAAAGGAAGAAAGCTTTCTTCAAGGCTTAAGGAGACAGATTTCAGTAAAGGAAGGTTTGAACTTGTTTTACAAAGTGATGGTAATCTTGTTATGCATTCTATTAATTTACCATCTGGTTTTGTTAATGAAAACTACTTTGAAAGTAATACTGTTGGATCCAGTACATCAAGTGCTGGAGCTCAATTGGTCTTTGACAAATCAGGGTACTTGTATGTTTTGGGAGAGAACAATGAGAAATACAATGTGTTTGAAGAAGAGAGTAACATTTCTACCACACAATTTTATCTTAGAGCAACTCTTAATTTTGATGGAGTGTTCACACTTTACAAGCATCCTAAGAGTTCAACTAAGAGTGAAGGTTGGACCACAGTATGGTCTAAGCCCTTTAATATATGTACTTATACTGTTAGTGCAGGTAGTGGTGTTTGTGGATATAATAGCTTCTGCACTTTGGGAGTTGATAAGAGACCAAAATGTCAGTGTCCAAAACATTACTCACTGATTGATCCTAATGATCCATATGGCAGCTGCAAGCCAGATTTCATCCAAGGATGTGCAGAAGATGATCCTAGTAAAAAGAGAAATGATCTCTATGAGTTCGAGATTTTGATCGACACTGATTGGCCTCTATCAGATTATGTGCTTCAAAGGCCTTTTACTGAAGAGCAGTGTAGGAAATCTTGTATGGATGATTGTTTGTGTTCTGTGGCTATTTTCAGGTTAGGTGATAGTTGTTGGAAGAAGAAGTTACCACTTTCAAATGGGAGAGTTGATGCAACTCTTAATGGTGCTAAGGCTTTCTTGAAAGTGAGAAAAGATAATGCCTCCCATAGTTCCACCATACCTGTCACAAATTAG

Protein sequence

>Msa1272950

MASSLLPFLLYSLILQSICAVAQTKSTIAIGDSFTAQASTSPWLLSPSGDFAFGFLPLKDTNLFLLSIWYPKISEKTVVWYANGDSPAPKGSKVELTANDGLVLTSPNGVRLWNTEGLNVKVSRGVLNDTGNFVLQDGKFNSLWETFKFPSDTLLPSQVVDKGRKLSSRLKETDFSKGRFELVLQSDGNLVMHSINLPSGFVNENYFESNTVGSSTSSAGAQLVFDKSGYLYVLGENNEKYNVFEEESNISTTQFYLRATLNFDGVFTLYKHPKSSTKSEGWTTVWSKPFNICTYTVSAGSGVCGYNSFCTLGVDKRPKCQCPKHYSLIDPNDPYGSCKPDFIQGCAEDDPSKKRNDLYEFEILIDTDWPLSDYVLQRPFTEEQCRKSCMDDCLCSVAIFRLGDSCWKKKLPLSNGRVDATLNGAKAFLKVRKDNASHSSTIPVTN*