Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0062170 | Msa0394280 | 0.815392 | 9.466561e-52 | -8.615850e-47 |
| Msa0087670 | Msa0394280 | 0.826990 | 2.003157e-54 | -8.615850e-47 |
| Msa0140620 | Msa0394280 | 0.828083 | 1.094923e-54 | -8.615850e-47 |
| Msa0207360 | Msa0394280 | 0.808360 | 3.218388e-50 | -8.615850e-47 |
| Msa0207410 | Msa0394280 | 0.826917 | 2.084976e-54 | -8.615850e-47 |
| Msa0207440 | Msa0394280 | 0.814860 | 1.242409e-51 | -8.615850e-47 |
| Msa0234270 | Msa0394280 | 0.803196 | 3.912429e-49 | -8.615850e-47 |
| Msa0234320 | Msa0394280 | 0.805695 | 1.178801e-49 | -8.615850e-47 |
| Msa0365860 | Msa0394280 | 0.824706 | 6.981161e-54 | -8.615850e-47 |
| Msa0394280 | Msa0518980 | 0.808601 | 2.858148e-50 | -8.615850e-47 |
| Msa0394280 | Msa0539050 | 0.824005 | 1.020416e-53 | -8.615850e-47 |
| Msa0394280 | Msa0539060 | 0.828661 | 7.942184e-55 | -8.615850e-47 |
| Msa0394280 | Msa0576730 | 0.843688 | 1.201074e-58 | -8.615850e-47 |
| Msa0394280 | Msa0702150 | 0.846352 | 2.292768e-59 | -8.615850e-47 |
| Msa0394280 | Msa0702270 | 0.840063 | 1.089201e-57 | -8.615850e-47 |
| Msa0394280 | Msa0748920 | 0.812896 | 3.366476e-51 | -8.615850e-47 |
| Msa0394280 | Msa0750650 | 0.813119 | 3.007102e-51 | -8.615850e-47 |
| Msa0394280 | Msa0751010 | 0.807379 | 5.202247e-50 | -8.615850e-47 |
| Msa0394280 | Msa0844410 | 0.802553 | 5.312193e-49 | -8.615850e-47 |
| Msa0394280 | Msa0944610 | 0.806051 | 9.922646e-50 | -8.615850e-47 |
| Msa0394280 | Msa0990830 | 0.841562 | 4.406225e-58 | -8.615850e-47 |
| Msa0394280 | Msa1020100 | 0.828620 | 8.125871e-55 | -8.615850e-47 |
| Msa0394280 | Msa1059310 | 0.833300 | 5.773724e-56 | -8.615850e-47 |
| Msa0394280 | Msa1099960 | 0.811575 | 6.536926e-51 | -8.615850e-47 |
| Msa0394280 | Msa1211830 | 0.804763 | 1.848129e-49 | -8.615850e-47 |
| Msa0394280 | Msa1253810 | 0.809985 | 1.443469e-50 | -8.615850e-47 |
| Msa0394280 | Msa1275110 | 0.811114 | 8.229780e-51 | -8.615850e-47 |
| Msa0394280 | Msa1303580 | 0.807051 | 6.106335e-50 | -8.615850e-47 |
| Msa0394280 | Msa1320580 | 0.839384 | 1.636863e-57 | -8.615850e-47 |
| Msa0394280 | Msa1323800 | 0.800119 | 1.673733e-48 | -8.615850e-47 |
| Msa0394280 | Msa1350680 | 0.807534 | 4.822304e-50 | -8.615850e-47 |
| Msa0394280 | Msa1351540 | 0.814015 | 1.910455e-51 | -8.615850e-47 |
| Msa0394280 | Msa1388160 | 0.802721 | 4.904550e-49 | -8.615850e-47 |
| Msa0394280 | Msa1406120 | 0.804527 | 2.070010e-49 | -8.615850e-47 |
| Msa0394280 | Msa1454450 | 0.803621 | 3.194008e-49 | -8.615850e-47 |
| Msa0394280 | Msa1454950 | 0.808798 | 2.594315e-50 | -8.615850e-47 |
| Msa0394280 | Msa1455280 | 0.842296 | 2.819191e-58 | -8.615850e-47 |
| Msa0309660 | Msa0394280 | 0.860415 | 2.098264e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394280 | MtrunA17_Chr2g0310031 | 86.111 | 36 | 5 | 0 | 81 | 116 | 5 | 40 | 5.10e-13 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 28 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGCTGGTTTGGGTGGTTT+TGG | 0.288579 | 3_2:-8856556 | Msa0394280:CDS |
| GATGGTGGATCAGGACTTAA+AGG | 0.386606 | 3_2:-8858392 | Msa0394280:CDS |
| AAAGAACGTGTGAGAAGAAA+AGG | 0.426784 | 3_2:+8858821 | None:intergenic |
| GCAGTTGTTTCTGTGTTGGC+AGG | 0.431100 | 3_2:-8856492 | Msa0394280:CDS |
| AAGGTTGCAACTGCAGCAAC+TGG | 0.439191 | 3_2:-8858373 | Msa0394280:CDS |
| AAGGAACGAGATGGTGGATC+AGG | 0.449652 | 3_2:-8858401 | Msa0394280:CDS |
| ATAAAGATTAAAATAACATA+GGG | 0.471562 | 3_2:-8856396 | Msa0394280:three_prime_UTR |
| GTCAGCAGTTGTTTCTGTGT+TGG | 0.484412 | 3_2:-8856496 | Msa0394280:CDS |
| GATAAAGATTAAAATAACAT+AGG | 0.490640 | 3_2:-8856397 | Msa0394280:three_prime_UTR |
| GGAATGGGTCGGGTGGGAGA+AGG | 0.509024 | 3_2:-8858420 | Msa0394280:CDS |
| TGTGCAGGTTGTCAGATTCA+AGG | 0.512612 | 3_2:-8858441 | Msa0394280:intron |
| GATTAAAATAACATAGTGGC+AGG | 0.527318 | 3_2:-8856348 | Msa0394280:three_prime_UTR |
| GGTTGTCAGATTCAAGGAAT+GGG | 0.533310 | 3_2:-8858435 | Msa0394280:CDS |
| TCAGATTCAAGGAATGGGTC+GGG | 0.536876 | 3_2:-8858430 | Msa0394280:CDS |
| AGGTTGTCAGATTCAAGGAA+TGG | 0.541574 | 3_2:-8858436 | Msa0394280:CDS |
| TCATGAAATGATTGTACATG+AGG | 0.549175 | 3_2:-8856259 | Msa0394280:three_prime_UTR |
| GTCAGATTCAAGGAATGGGT+CGG | 0.562371 | 3_2:-8858431 | Msa0394280:CDS |
| GATTCAAGGAATGGGTCGGG+TGG | 0.567627 | 3_2:-8858427 | Msa0394280:CDS |
| ATTCAAGGAATGGGTCGGGT+GGG | 0.567684 | 3_2:-8858426 | Msa0394280:CDS |
| TGGGAGAAGGAACGAGATGG+TGG | 0.575216 | 3_2:-8858407 | Msa0394280:CDS |
| TGCTGACAGCAGCATACTCA+CGG | 0.581365 | 3_2:+8856512 | None:intergenic |
| CAATTGTATAAGTGTATGAG+TGG | 0.604418 | 3_2:-8856208 | None:intergenic |
| TAAAGATTAAAATAACATAG+TGG | 0.607047 | 3_2:-8856352 | Msa0394280:three_prime_UTR |
| CTGAAGGATCTTCAAACCGA+AGG | 0.628044 | 3_2:-8858215 | Msa0394280:CDS |
| GGGTGGGAGAAGGAACGAGA+TGG | 0.629943 | 3_2:-8858410 | Msa0394280:CDS |
| AACGTGTGAGAAGAAAAGGT+AGG | 0.665735 | 3_2:+8858825 | None:intergenic |
| CTACAACTTCTCCACTACCA+AGG | 0.672388 | 3_2:-8858334 | Msa0394280:intron |
| TAAAGATTAAAATAACATAG+GGG | 0.699413 | 3_2:-8856395 | Msa0394280:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGTTTAAAAAATATAAAG+TGG | + | chr3_2:8858052-8858071 | None:intergenic | 10.0% |
| !! | ATAAAGATTAAAATAACATA+GGG | - | chr3_2:8858663-8858682 | Msa0394280:intron | 10.0% |
| !!! | GTAGTTTAATCAAAATTTTA+AGG | + | chr3_2:8857253-8857272 | None:intergenic | 15.0% |
| !!! | CATGGTTTAATAATTTTTTT+TGG | - | chr3_2:8857446-8857465 | Msa0394280:intron | 15.0% |
| !! | GATAAAGATTAAAATAACAT+AGG | - | chr3_2:8858662-8858681 | Msa0394280:intron | 15.0% |
| !! | TAAAGATTAAAATAACATAG+GGG | - | chr3_2:8858664-8858683 | Msa0394280:intron | 15.0% |
| !! | TAAAGATTAAAATAACATAG+TGG | - | chr3_2:8858664-8858683 | Msa0394280:intron | 15.0% |
| !!! | TTGTAATGAGTTTGTTTTAT+TGG | - | chr3_2:8856813-8856832 | Msa0394280:intron | 20.0% |
| !!! | AATGAGTTTTCTGAATTTAA+TGG | - | chr3_2:8856937-8856956 | Msa0394280:intron | 20.0% |
| !!! | ATTGAGTTTATTTTGTTTGT+TGG | - | chr3_2:8856981-8857000 | Msa0394280:intron | 20.0% |
| !!! | TTTCTTCAGATTTGATAATT+TGG | - | chr3_2:8857416-8857435 | Msa0394280:intron | 20.0% |
| !! | GATGAATAAAAAATACCAAA+AGG | + | chr3_2:8857587-8857606 | None:intergenic | 20.0% |
| !!! | GATTTTATATTCTTTGCTTT+TGG | - | chr3_2:8857672-8857691 | Msa0394280:intron | 20.0% |
| !!! | TAAAATATTTGTTACCACAT+AGG | + | chr3_2:8857802-8857821 | None:intergenic | 20.0% |
| !!! | TAAAATATTTGTTACCACAT+AGG | + | chr3_2:8857802-8857821 | None:intergenic | 20.0% |
| !!! | CTTTTTAACTCATTTGAATT+TGG | - | chr3_2:8858074-8858093 | Msa0394280:intron | 20.0% |
| !! | AGCTCATTGTAATTAAATAA+TGG | - | chr3_2:8858192-8858211 | Msa0394280:intron | 20.0% |
| !! | GCTCATTGTAATTAAATAAT+GGG | - | chr3_2:8858193-8858212 | Msa0394280:intron | 20.0% |
| !! | ATGATTTTGTAGAAGGAAAA+AGG | + | chr3_2:8856315-8856334 | None:intergenic | 25.0% |
| ! | ATGAGAAAATGAAATCATCT+GGG | + | chr3_2:8856415-8856434 | None:intergenic | 25.0% |
| ! | TATGAGAAAATGAAATCATC+TGG | + | chr3_2:8856416-8856435 | None:intergenic | 25.0% |
| !! | ATTTTTGTGTCTGATTCTTT+TGG | - | chr3_2:8857026-8857045 | Msa0394280:intron | 25.0% |
| ! | AAAACTAACACAACATACAA+AGG | + | chr3_2:8857275-8857294 | None:intergenic | 25.0% |
| ! | TGATAATTTGGTCATTTACA+TGG | - | chr3_2:8857428-8857447 | Msa0394280:intron | 25.0% |
| ! | TAAATTTCAGTCAACATAAC+TGG | + | chr3_2:8857529-8857548 | None:intergenic | 25.0% |
| !! | AGTTATGTTGACTGAAATTT+AGG | - | chr3_2:8857528-8857547 | Msa0394280:intron | 25.0% |
| !!! | AACTTTAGAATGATACCTTT+TGG | - | chr3_2:8857569-8857588 | Msa0394280:intron | 25.0% |
| !! | TTTTTATTCATCATGTGCAT+AGG | - | chr3_2:8857595-8857614 | Msa0394280:intron | 25.0% |
| ! | TAAAATCCTAAAAGCAAGAA+AGG | + | chr3_2:8857659-8857678 | None:intergenic | 25.0% |
| ! | ATCTATCATTATGCAACAAA+AGG | + | chr3_2:8857772-8857791 | None:intergenic | 25.0% |
| ! | TTGTTGCATAATGATAGATA+TGG | - | chr3_2:8857773-8857792 | Msa0394280:intron | 25.0% |
| ! | TGTTGCATAATGATAGATAT+GGG | - | chr3_2:8857774-8857793 | Msa0394280:intron | 25.0% |
| ! | AAATGATTGTTTGTGATATC+TGG | - | chr3_2:8858261-8858280 | Msa0394280:intron | 25.0% |
| ! | AGAACAGTTATAATGACATA+TGG | - | chr3_2:8858312-8858331 | Msa0394280:intron | 25.0% |
| ! | TTAAGATACAATTTCCTGAT+TGG | + | chr3_2:8858363-8858382 | None:intergenic | 25.0% |
| ! | ATTTTGTAGAAGGAAAAAGG+AGG | + | chr3_2:8856312-8856331 | None:intergenic | 30.0% |
| CACAATCATATTCAACAAAG+AGG | + | chr3_2:8856602-8856621 | None:intergenic | 30.0% | |
| TTTGTTGAATATGATTGTGC+AGG | - | chr3_2:8856603-8856622 | Msa0394280:intron | 30.0% | |
| TGAAAGGAAAAATCTTACCT+TGG | + | chr3_2:8856745-8856764 | None:intergenic | 30.0% | |
| ! | TTTCCTTTCAATTCTTTTGC+TGG | - | chr3_2:8856755-8856774 | Msa0394280:intron | 30.0% |
| ! | ATGAGTATAGAGTAGTGTTT+TGG | - | chr3_2:8857476-8857495 | Msa0394280:intron | 30.0% |
| !! | ATCATTCTAAAGTTCCAGAA+TGG | + | chr3_2:8857563-8857582 | None:intergenic | 30.0% |
| ATCTATCATTATGCAGCAAA+AGG | + | chr3_2:8857837-8857856 | None:intergenic | 30.0% | |
| AATGATAGATATGACCTATG+TGG | - | chr3_2:8857847-8857866 | Msa0394280:intron | 30.0% | |
| ACATGTTTAGTACTTTGTGT+TGG | - | chr3_2:8858223-8858242 | Msa0394280:intron | 30.0% | |
| ! | GTTTTGTGAATGTTTCTTTG+AGG | - | chr3_2:8858390-8858409 | Msa0394280:CDS | 30.0% |
| !!! | TCTGTTTTTTTAGCTGGTTT+GGG | - | chr3_2:8858494-8858513 | Msa0394280:intron | 30.0% |
| GATTAAAATAACATAGTGGC+AGG | - | chr3_2:8858711-8858730 | Msa0394280:intron | 30.0% | |
| TCATGAAATGATTGTACATG+AGG | - | chr3_2:8858800-8858819 | Msa0394280:CDS | 30.0% | |
| AAAGAACGTGTGAGAAGAAA+AGG | + | chr3_2:8856241-8856260 | None:intergenic | 35.0% | |
| AGAAAATGAAATCATCTGGG+CGG | + | chr3_2:8856412-8856431 | None:intergenic | 35.0% | |
| GTGAAGGGGAAATTGAAAAT+GGG | + | chr3_2:8856473-8856492 | None:intergenic | 35.0% | |
| TGTGAAGGGGAAATTGAAAA+TGG | + | chr3_2:8856474-8856493 | None:intergenic | 35.0% | |
| CAAAACCTTAAAAGAGAGAG+AGG | + | chr3_2:8856508-8856527 | None:intergenic | 35.0% | |
| GAAAAATCTTACCTTGGTAG+TGG | + | chr3_2:8856739-8856758 | None:intergenic | 35.0% | |
| !!! | TTTATTGGTTTTGCAGCTGA+AGG | - | chr3_2:8856828-8856847 | Msa0394280:intron | 35.0% |
| !! | CTCACTCTGATTTTAACCTT+CGG | + | chr3_2:8856863-8856882 | None:intergenic | 35.0% |
| TCATTCATGTGATCTTTGTG+TGG | - | chr3_2:8857321-8857340 | Msa0394280:intron | 35.0% | |
| CATATGAGAGTTGTTGTCAT+AGG | - | chr3_2:8857377-8857396 | Msa0394280:intron | 35.0% | |
| !!! | AGAGTAGTGTTTTGGTTGAT+TGG | - | chr3_2:8857484-8857503 | Msa0394280:intron | 35.0% |
| TAAAAGCAAGAAAGGAGGTA+TGG | + | chr3_2:8857651-8857670 | None:intergenic | 35.0% | |
| !! | ATACCTCCTTTCTTGCTTTT+AGG | - | chr3_2:8857650-8857669 | Msa0394280:intron | 35.0% |
| AATCCTAAAAGCAAGAAAGG+AGG | + | chr3_2:8857656-8857675 | None:intergenic | 35.0% | |
| ATGCAACAAAAGGAGAAGAA+AGG | + | chr3_2:8857762-8857781 | None:intergenic | 35.0% | |
| GCAGTAGTGATAATAATGAC+AGG | + | chr3_2:8858030-8858049 | None:intergenic | 35.0% | |
| TAGAGAGTTGTAATGACACA+TGG | - | chr3_2:8858286-8858305 | Msa0394280:intron | 35.0% | |
| !!! | GTGTTTTAATGACTCCAATC+AGG | - | chr3_2:8858346-8858365 | Msa0394280:CDS | 35.0% |
| ATATGCTGTCAGTATCTGTT+TGG | - | chr3_2:8858464-8858483 | Msa0394280:intron | 35.0% | |
| !!! | GTCTGTTTTTTTAGCTGGTT+TGG | - | chr3_2:8858493-8858512 | Msa0394280:intron | 35.0% |
| AACGTGTGAGAAGAAAAGGT+AGG | + | chr3_2:8856237-8856256 | None:intergenic | 40.0% | |
| GTAGAAGGAAAAAGGAGGAA+AGG | + | chr3_2:8856307-8856326 | None:intergenic | 40.0% | |
| ! | CCAGGAGATGATTTTGTAGA+AGG | + | chr3_2:8856322-8856341 | None:intergenic | 40.0% |
| CCTTCTACAAAATCATCTCC+TGG | - | chr3_2:8856319-8856338 | Msa0394280:three_prime_UTR | 40.0% | |
| AGTTGAACAACAGGATTTGG+AGG | + | chr3_2:8856353-8856372 | None:intergenic | 40.0% | |
| GGAAGTTGAACAACAGGATT+TGG | + | chr3_2:8856356-8856375 | None:intergenic | 40.0% | |
| ! | AGTGATGGAAGTTGAACAAC+AGG | + | chr3_2:8856362-8856381 | None:intergenic | 40.0% |
| AGGAAGCTTAGGTTTGTGAA+GGG | + | chr3_2:8856488-8856507 | None:intergenic | 40.0% | |
| AAAAGAGAGAGAGGAAGCTT+AGG | + | chr3_2:8856499-8856518 | None:intergenic | 40.0% | |
| ! | AGCTTCCTCTCTCTCTTTTA+AGG | - | chr3_2:8856500-8856519 | Msa0394280:CDS | 40.0% |
| AGGTTGTCAGATTCAAGGAA+TGG | - | chr3_2:8856623-8856642 | Msa0394280:intron | 40.0% | |
| GGTTGTCAGATTCAAGGAAT+GGG | - | chr3_2:8856624-8856643 | Msa0394280:intron | 40.0% | |
| TCGCCAGCAAAAGAATTGAA+AGG | + | chr3_2:8856761-8856780 | None:intergenic | 40.0% | |
| TCAGAAAACTCATTCGATCG+CGG | + | chr3_2:8856931-8856950 | None:intergenic | 40.0% | |
| ! | TTAAGGTTGAAAGCACACAC+TGG | + | chr3_2:8857236-8857255 | None:intergenic | 40.0% |
| ! | TTTGTGTGGTTGACTTCTAC+AGG | - | chr3_2:8857335-8857354 | Msa0394280:intron | 40.0% |
| TTAGGCTCTTGAATCCATTC+TGG | - | chr3_2:8857546-8857565 | Msa0394280:intron | 40.0% | |
| AAAGGAGAAGAAAGGAGGTA+TGG | + | chr3_2:8857754-8857773 | None:intergenic | 40.0% | |
| CAACAAAAGGAGAAGAAAGG+AGG | + | chr3_2:8857759-8857778 | None:intergenic | 40.0% | |
| TAGTTTGGATGGCAACTTCA+AGG | + | chr3_2:8857926-8857945 | None:intergenic | 40.0% | |
| TTGCCATCCAAACTATGTGA+AGG | - | chr3_2:8857931-8857950 | Msa0394280:intron | 40.0% | |
| ACACCTTCACATAGTTTGGA+TGG | + | chr3_2:8857937-8857956 | None:intergenic | 40.0% | |
| ATGCACACCTTCACATAGTT+TGG | + | chr3_2:8857941-8857960 | None:intergenic | 40.0% | |
| TAGTTTGGATGGCATCTTCA+AGG | + | chr3_2:8857978-8857997 | None:intergenic | 40.0% | |
| ATGCCATCCAAACTATGTGA+AGG | - | chr3_2:8857983-8858002 | Msa0394280:intron | 40.0% | |
| ACACCTTCACATAGTTTGGA+TGG | + | chr3_2:8857937-8857956 | None:intergenic | 40.0% | |
| ATGCACACCTTCACATAGTT+TGG | + | chr3_2:8857941-8857960 | None:intergenic | 40.0% | |
| !! | ACTAAGCTTTAAGCAGAGCT+TGG | + | chr3_2:8858156-8858175 | None:intergenic | 40.0% |
| !!! | TGCAGGTCTGTTTTTTTAGC+TGG | - | chr3_2:8858488-8858507 | Msa0394280:intron | 40.0% |
| !!! | GTTTTTTTAGCTGGTTTGGG+TGG | - | chr3_2:8858497-8858516 | Msa0394280:intron | 40.0% |
| GAACAACAGGATTTGGAGGA+GGG | + | chr3_2:8856349-8856368 | None:intergenic | 45.0% | |
| TGAACAACAGGATTTGGAGG+AGG | + | chr3_2:8856350-8856369 | None:intergenic | 45.0% | |
| AAGAGAGAAGGGTGAAGTGA+TGG | + | chr3_2:8856377-8856396 | None:intergenic | 45.0% | |
| ! | CGGTGGTTTGTAAGAGAGAA+GGG | + | chr3_2:8856388-8856407 | None:intergenic | 45.0% |
| CCTTCTCTCTTACAAACCAC+CGG | - | chr3_2:8856386-8856405 | Msa0394280:three_prime_UTR | 45.0% | |
| GGAAGCTTAGGTTTGTGAAG+GGG | + | chr3_2:8856487-8856506 | None:intergenic | 45.0% | |
| GAGGAAGCTTAGGTTTGTGA+AGG | + | chr3_2:8856489-8856508 | None:intergenic | 45.0% | |
| TGTGCAGGTTGTCAGATTCA+AGG | - | chr3_2:8856618-8856637 | Msa0394280:intron | 45.0% | |
| GTCAGATTCAAGGAATGGGT+CGG | - | chr3_2:8856628-8856647 | Msa0394280:intron | 45.0% | |
| TCAGATTCAAGGAATGGGTC+GGG | - | chr3_2:8856629-8856648 | Msa0394280:intron | 45.0% | |
| !! | GATGGTGGATCAGGACTTAA+AGG | - | chr3_2:8856667-8856686 | Msa0394280:intron | 45.0% |
| CTACAACTTCTCCACTACCA+AGG | - | chr3_2:8856725-8856744 | Msa0394280:intron | 45.0% | |
| ! | TTTTGCTGGCGAGTAACTTG+CGG | - | chr3_2:8856769-8856788 | Msa0394280:intron | 45.0% |
| CTGAAGGATCTTCAAACCGA+AGG | - | chr3_2:8856844-8856863 | Msa0394280:intron | 45.0% | |
| GATAGATATGGGCACCTATG+TGG | - | chr3_2:8857785-8857804 | Msa0394280:intron | 45.0% | |
| GTCAGTATCTGTTTGGTTGC+AGG | - | chr3_2:8858471-8858490 | Msa0394280:intron | 45.0% | |
| !!! | TTAGCTGGTTTGGGTGGTTT+TGG | - | chr3_2:8858503-8858522 | Msa0394280:intron | 45.0% |
| !!! | TTGGGTGGTTTTGGCTGTTT+TGG | - | chr3_2:8858512-8858531 | Msa0394280:intron | 45.0% |
| !! | GTCAGCAGTTGTTTCTGTGT+TGG | - | chr3_2:8858563-8858582 | Msa0394280:intron | 45.0% |
| AACAGGATTTGGAGGAGGGA+TGG | + | chr3_2:8856345-8856364 | None:intergenic | 50.0% | |
| ! | CCGGTGGTTTGTAAGAGAGA+AGG | + | chr3_2:8856389-8856408 | None:intergenic | 50.0% |
| AATGAAATCATCTGGGCGGC+CGG | + | chr3_2:8856408-8856427 | None:intergenic | 50.0% | |
| ATTCAAGGAATGGGTCGGGT+GGG | - | chr3_2:8856633-8856652 | Msa0394280:intron | 50.0% | |
| !! | AAGGAACGAGATGGTGGATC+AGG | - | chr3_2:8856658-8856677 | Msa0394280:intron | 50.0% |
| AAGGTTGCAACTGCAGCAAC+TGG | - | chr3_2:8856686-8856705 | Msa0394280:intron | 50.0% | |
| TGCTGACAGCAGCATACTCA+CGG | + | chr3_2:8858550-8858569 | None:intergenic | 50.0% | |
| !! | GCAGTTGTTTCTGTGTTGGC+AGG | - | chr3_2:8858567-8858586 | Msa0394280:intron | 50.0% |
| GATTCAAGGAATGGGTCGGG+TGG | - | chr3_2:8856632-8856651 | Msa0394280:intron | 55.0% | |
| TGGGAGAAGGAACGAGATGG+TGG | - | chr3_2:8856652-8856671 | Msa0394280:intron | 55.0% | |
| GATTTGGAGGAGGGATGGCC+AGG | + | chr3_2:8856340-8856359 | None:intergenic | 60.0% | |
| GGGTGGGAGAAGGAACGAGA+TGG | - | chr3_2:8856649-8856668 | Msa0394280:intron | 60.0% | |
| GAAATCATCTGGGCGGCCGG+TGG | + | chr3_2:8856405-8856424 | None:intergenic | 65.0% | |
| GGAATGGGTCGGGTGGGAGA+AGG | - | chr3_2:8856639-8856658 | Msa0394280:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 8856209 | 8858872 | 8856209 | ID=Msa0394280;Name=Msa0394280 |
| chr3_2 | mRNA | 8856209 | 8858872 | 8856209 | ID=Msa0394280-mRNA-1;Parent=Msa0394280;Name=Msa0394280-mRNA-1;_AED=0.26;_eAED=0.36;_QI=0|0.33|0.75|1|1|1|4|268|116 |
| chr3_2 | exon | 8856209 | 8856588 | 8856209 | ID=Msa0394280-mRNA-1:exon:2323;Parent=Msa0394280-mRNA-1 |
| chr3_2 | exon | 8858204 | 8858237 | 8858204 | ID=Msa0394280-mRNA-1:exon:2322;Parent=Msa0394280-mRNA-1 |
| chr3_2 | exon | 8858335 | 8858456 | 8858335 | ID=Msa0394280-mRNA-1:exon:2321;Parent=Msa0394280-mRNA-1 |
| chr3_2 | exon | 8858790 | 8858872 | 8858790 | ID=Msa0394280-mRNA-1:exon:2320;Parent=Msa0394280-mRNA-1 |
| chr3_2 | CDS | 8858790 | 8858872 | 8858790 | ID=Msa0394280-mRNA-1:cds;Parent=Msa0394280-mRNA-1 |
| chr3_2 | CDS | 8858335 | 8858456 | 8858335 | ID=Msa0394280-mRNA-1:cds;Parent=Msa0394280-mRNA-1 |
| chr3_2 | CDS | 8858204 | 8858237 | 8858204 | ID=Msa0394280-mRNA-1:cds;Parent=Msa0394280-mRNA-1 |
| chr3_2 | CDS | 8856477 | 8856588 | 8856477 | ID=Msa0394280-mRNA-1:cds;Parent=Msa0394280-mRNA-1 |
| chr3_2 | three_prime_UTR | 8856209 | 8856476 | 8856209 | ID=Msa0394280-mRNA-1:three_prime_utr;Parent=Msa0394280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
