Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407220 | AES90722.1 | 94.884 | 215 | 11 | 0 | 3 | 217 | 4 | 218 | 1.19e-133 | 384 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407220 | G7JE21 | 94.884 | 215 | 11 | 0 | 3 | 217 | 4 | 218 | 5.67e-134 | 384 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa1407220 | 0.811696 | 6.153307e-51 | -8.615850e-47 |
| Msa0061290 | Msa1407220 | 0.808098 | 3.659141e-50 | -8.615850e-47 |
| Msa1391770 | Msa1407220 | 0.802603 | 5.187973e-49 | -8.615850e-47 |
| Msa0157290 | Msa1407220 | 0.811775 | 5.913520e-51 | -8.615850e-47 |
| Msa0222700 | Msa1407220 | 0.801295 | 9.631589e-49 | -8.615850e-47 |
| Msa1297060 | Msa1407220 | 0.832952 | 7.045645e-56 | -8.615850e-47 |
| Msa1302830 | Msa1407220 | 0.800069 | 1.713423e-48 | -8.615850e-47 |
| Msa1330410 | Msa1407220 | 0.813893 | 2.032622e-51 | -8.615850e-47 |
| Msa0379770 | Msa1407220 | 0.816270 | 6.028598e-52 | -8.615850e-47 |
| Msa0264040 | Msa1407220 | 0.806736 | 7.115643e-50 | -8.615850e-47 |
| Msa0339320 | Msa1407220 | 0.806721 | 7.168143e-50 | -8.615850e-47 |
| Msa1206050 | Msa1407220 | 0.996986 | 3.883509e-235 | -8.615850e-47 |
| Msa1222850 | Msa1407220 | 0.809449 | 1.881720e-50 | -8.615850e-47 |
| Msa0880140 | Msa1407220 | 0.807762 | 4.314566e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407220 | MtrunA17_Chr4g0054061 | 94.884 | 215 | 11 | 0 | 3 | 217 | 4 | 218 | 1.09e-137 | 384 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407220 | AT3G49890.1 | 46.396 | 222 | 105 | 5 | 1 | 218 | 1 | 212 | 2.86e-56 | 178 |
| Msa1407220 | AT3G49890.2 | 41.200 | 250 | 105 | 6 | 1 | 218 | 1 | 240 | 2.68e-50 | 164 |
Find 63 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTAATCTTTGGGGATTT+AGG | 0.177270 | tig0023279:-5550 | None:intergenic |
| ATTATCATTATGCTTCTTCT+TGG | 0.221055 | tig0023279:-5521 | None:intergenic |
| GCTTAATCTTTGGGGATTTA+GGG | 0.228273 | tig0023279:-5549 | None:intergenic |
| AGTTGGTAGTGCTTAATCTT+TGG | 0.259629 | tig0023279:-5559 | None:intergenic |
| GTTGGTAGTGCTTAATCTTT+GGG | 0.273130 | tig0023279:-5558 | None:intergenic |
| CTTCTTGGTGTCATTGTTGT+TGG | 0.276148 | tig0023279:-5506 | None:intergenic |
| TCTTCTCCCGGAACAAGTTT+AGG | 0.314989 | tig0023279:-7375 | None:intergenic |
| TTGGCAGGCACAAAAGCTTT+TGG | 0.334252 | tig0023279:+5897 | Msa1407220:intron |
| TATGTCACTTCCTTCTTGAA+TGG | 0.336482 | tig0023279:+5472 | Msa1407220:CDS |
| GCAGCCATTGATTCCGTTGC+CGG | 0.343503 | tig0023279:+5439 | Msa1407220:CDS |
| ATTCAATCTATTGCTGTAGA+TGG | 0.344191 | tig0023279:+7526 | Msa1407220:CDS |
| CTGCTACAGTAGCCATTGTT+TGG | 0.353921 | tig0023279:-5382 | None:intergenic |
| AGGTCGTTTCCTTGGCGGTT+GGG | 0.354183 | tig0023279:-7355 | None:intergenic |
| AATTCTTTCCTCCTCTGTCT+TGG | 0.368441 | tig0023279:-7635 | None:intergenic |
| GAAACGACCTAAACTTGTTC+CGG | 0.373276 | tig0023279:+7368 | Msa1407220:CDS |
| CTGGTTTAGAATGTCTAAAC+AGG | 0.391452 | tig0023279:-6008 | None:intergenic |
| GATCTTAACCTGCATTTCCT+TGG | 0.392728 | tig0023279:-7704 | None:intergenic |
| ATGCCGCAATCATCGACATT+AGG | 0.437333 | tig0023279:-5982 | None:intergenic |
| AGTGACATAGGAGGAGGTTC+CGG | 0.442671 | tig0023279:-5458 | None:intergenic |
| GGTCGTTTCCTTGGCGGTTG+GGG | 0.447469 | tig0023279:-7354 | None:intergenic |
| AACCTGCATTTCCTTGGCCA+TGG | 0.449954 | tig0023279:-7698 | None:intergenic |
| CGACATTAGGATCCTCATCT+AGG | 0.450341 | tig0023279:-5969 | None:intergenic |
| TAGGTCGTTTCCTTGGCGGT+TGG | 0.450947 | tig0023279:-7356 | None:intergenic |
| AAACGACCTAAACTTGTTCC+GGG | 0.451262 | tig0023279:+7369 | Msa1407220:CDS |
| ACAAGTTTAGGTCGTTTCCT+TGG | 0.460078 | tig0023279:-7363 | None:intergenic |
| TCAAACACTAATAGTGTCTT+CGG | 0.460581 | tig0023279:+7725 | Msa1407220:exon |
| GATTAAGCACTACCAACTTA+AGG | 0.464419 | tig0023279:+5564 | Msa1407220:CDS |
| CTTGGTGTCATTGTTGTTGG+TGG | 0.472021 | tig0023279:-5503 | None:intergenic |
| AATAGTGTCTTCGGAGATGC+AGG | 0.494241 | tig0023279:+7734 | Msa1407220:exon |
| TGATGCATACAAGAAATCAT+TGG | 0.494355 | tig0023279:+7573 | Msa1407220:CDS |
| TTCTCATCAATATCTTCTCC+CGG | 0.497015 | tig0023279:-7387 | None:intergenic |
| TTTAGAATTGGACCTTAAGT+TGG | 0.504850 | tig0023279:-5576 | None:intergenic |
| TAAACAACATTAAAGTAAAG+AGG | 0.505007 | tig0023279:-7794 | None:intergenic |
| TGCATTTCCTTGGCCATGGA+TGG | 0.510483 | tig0023279:-7694 | None:intergenic |
| GGTTCCGGCAACGGAATCAA+TGG | 0.515860 | tig0023279:-5443 | None:intergenic |
| AGTTTAGGTCGTTTCCTTGG+CGG | 0.526801 | tig0023279:-7360 | None:intergenic |
| ATCCATGGCCAAGGAAATGC+AGG | 0.528018 | tig0023279:+7696 | Msa1407220:CDS |
| AGAAAGGTGGTTACCATCCA+TGG | 0.528142 | tig0023279:+7681 | Msa1407220:CDS |
| GAAACAACGTTGTAGAATGC+AGG | 0.539960 | tig0023279:-8079 | None:intergenic |
| CTGTTTAGACATTCTAAACC+AGG | 0.547528 | tig0023279:+6009 | Msa1407220:CDS |
| GGTGTCATTGTTGTTGGTGG+CGG | 0.554093 | tig0023279:-5500 | None:intergenic |
| ATGAAGACGGTGACGCAGCA+TGG | 0.564455 | tig0023279:+5413 | Msa1407220:CDS |
| ATAGGAGGAGGTTCCGGCAA+CGG | 0.566478 | tig0023279:-5452 | None:intergenic |
| TTAGGATCCTCATCTAGGAC+AGG | 0.568212 | tig0023279:-5964 | None:intergenic |
| ATTCAAGAAGGAAGTGACAT+AGG | 0.569799 | tig0023279:-5470 | None:intergenic |
| TCAAACATCAATACTGACAT+TGG | 0.572830 | tig0023279:+7757 | Msa1407220:three_prime_UTR |
| TATTGATGAGAAATCAAAGA+AGG | 0.576415 | tig0023279:+7398 | Msa1407220:CDS |
| GAAGGAAGTGACATAGGAGG+AGG | 0.580901 | tig0023279:-5464 | None:intergenic |
| GTTGATCATAAAATGAGCAT+CGG | 0.585046 | tig0023279:+7973 | Msa1407220:three_prime_UTR |
| ATCTATTCCTGTCCTAGATG+AGG | 0.593312 | tig0023279:+5957 | Msa1407220:CDS |
| TACCTCAACAGTTTAGAAGA+CGG | 0.593760 | tig0023279:+7503 | Msa1407220:intron |
| GATCCTAATGTCGATGATTG+CGG | 0.595195 | tig0023279:+5979 | Msa1407220:CDS |
| AATGGCTACTGTAGCAGCAG+TGG | 0.604176 | tig0023279:+5388 | Msa1407220:CDS |
| CAGATGAACCCCAACCGCCA+AGG | 0.604989 | tig0023279:+7346 | Msa1407220:intron |
| AGCAGCAGTGGCGATGAAGA+CGG | 0.605287 | tig0023279:+5400 | Msa1407220:CDS |
| GGCGGAAAATCCATTCAAGA+AGG | 0.609902 | tig0023279:-5482 | None:intergenic |
| AAAAGCTAAAGCCAAGACAG+AGG | 0.615616 | tig0023279:+7624 | Msa1407220:CDS |
| TTGGTAGTGCTTAATCTTTG+GGG | 0.616398 | tig0023279:-5557 | None:intergenic |
| AGCTAAAGCCAAGACAGAGG+AGG | 0.620686 | tig0023279:+7627 | Msa1407220:CDS |
| CAAGAAGGAAGTGACATAGG+AGG | 0.628507 | tig0023279:-5467 | None:intergenic |
| GTGGTTACCATCCATGGCCA+AGG | 0.644984 | tig0023279:+7687 | Msa1407220:CDS |
| ATGGCAGAAGAACCAAACAA+TGG | 0.702147 | tig0023279:+5370 | Msa1407220:CDS |
| AAACCTGAAAGAGTGAACAA+TGG | 0.716102 | tig0023279:+5351 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGCAAAAATAAAATAAAATT+AGG | + | tig0023279:5659-5678 | Msa1407220:intron | 10.0% |
| !!! | ATAAAATAAAATTAGGATTT+TGG | + | tig0023279:5666-5685 | Msa1407220:intron | 10.0% |
| !!! | AAAAATGAGAAATTTAGAAT+TGG | - | tig0023279:5591-5610 | None:intergenic | 15.0% |
| !!! | TTTTAGATTTTTGATAGTTT+TGG | + | tig0023279:6108-6127 | Msa1407220:intron | 15.0% |
| !!! | CAACTTTTAAAAAGAAAAAT+AGG | - | tig0023279:6156-6175 | None:intergenic | 15.0% |
| !! | TAAGTTAAATAAATAGTGTA+AGG | + | tig0023279:7234-7253 | Msa1407220:intron | 15.0% |
| !! | AAGTTAAATAAATAGTGTAA+GGG | + | tig0023279:7235-7254 | Msa1407220:intron | 15.0% |
| !! | TTGAGAAATTGAAAAAAATT+AGG | + | tig0023279:7656-7675 | Msa1407220:CDS | 15.0% |
| !! | TGAGAAATTGAAAAAAATTA+GGG | + | tig0023279:7657-7676 | Msa1407220:CDS | 15.0% |
| !!! | AAAACTGAATTTTGTTTTGT+GGG | - | tig0023279:5713-5732 | None:intergenic | 20.0% |
| !!! | AAAAACTGAATTTTGTTTTG+TGG | - | tig0023279:5714-5733 | None:intergenic | 20.0% |
| !! | TTTATGTTGTGTATGTTTAT+TGG | + | tig0023279:5878-5897 | Msa1407220:intron | 20.0% |
| !! | ATATAAATGTCAAAGAACAA+TGG | - | tig0023279:6223-6242 | None:intergenic | 20.0% |
| !!! | ATTAGAGACTAAATTCATTT+TGG | + | tig0023279:6899-6918 | Msa1407220:intron | 20.0% |
| !!! | ACAACTTTTATTTTTTTGAC+AGG | + | tig0023279:7009-7028 | Msa1407220:intron | 20.0% |
| !!! | TTTTAGATATTAATGGTTTG+AGG | + | tig0023279:7064-7083 | Msa1407220:intron | 20.0% |
| !! | AGTTAAATAAATAGTGTAAG+GGG | + | tig0023279:7236-7255 | Msa1407220:intron | 20.0% |
| !! | GAGAAATTGAAAAAAATTAG+GGG | + | tig0023279:7658-7677 | Msa1407220:CDS | 20.0% |
| !! | TAAACAACATTAAAGTAAAG+AGG | - | tig0023279:7797-7816 | None:intergenic | 20.0% |
| !!! | AAAAATTGTTGATTTGTTAG+TGG | + | tig0023279:7833-7852 | Msa1407220:three_prime_UTR | 20.0% |
| !!! | TTTATAACTACATTGTTTTG+AGG | - | tig0023279:7868-7887 | None:intergenic | 20.0% |
| !!! | AATGATTTTAAAGTTTTCAG+TGG | + | tig0023279:8045-8064 | Msa1407220:three_prime_UTR | 20.0% |
| ! | ATTATCATTATGCTTCTTCT+TGG | - | tig0023279:5524-5543 | None:intergenic | 25.0% |
| ! | GTAACAAAAAAACATGAACT+TGG | - | tig0023279:5741-5760 | None:intergenic | 25.0% |
| !!! | AGTTCATGTTTTTTTGTTAC+TGG | + | tig0023279:5741-5760 | Msa1407220:intron | 25.0% |
| !! | ATTTGCAATTTTGCAAAAGA+AGG | - | tig0023279:5794-5813 | None:intergenic | 25.0% |
| !! | ATTTTTCTTCTCATGGTTTT+TGG | + | tig0023279:5846-5865 | Msa1407220:intron | 25.0% |
| !!! | TTGTTTTTTTGTAGTGTTTC+TGG | + | tig0023279:6173-6192 | Msa1407220:intron | 25.0% |
| ! | AAACAAGAAAAAAGCTGAAT+TGG | + | tig0023279:6256-6275 | Msa1407220:intron | 25.0% |
| ! | AACAAGAAAAAAGCTGAATT+GGG | + | tig0023279:6257-6276 | Msa1407220:intron | 25.0% |
| !!! | AGACTAAATTCATTTTGGTT+TGG | + | tig0023279:6904-6923 | Msa1407220:intron | 25.0% |
| !! | TTTGTAGAGAATTTGACTTA+TGG | - | tig0023279:6935-6954 | None:intergenic | 25.0% |
| ! | TACAAGTAAACTAGTTGTTA+CGG | - | tig0023279:7035-7054 | None:intergenic | 25.0% |
| ! | GTGAAAAATAAAAATCAGTC+TGG | - | tig0023279:7155-7174 | None:intergenic | 25.0% |
| ! | TATTGATGAGAAATCAAAGA+AGG | + | tig0023279:7398-7417 | Msa1407220:CDS | 25.0% |
| !!! | TCTTGTATTTTTATCAGTGA+CGG | + | tig0023279:7915-7934 | Msa1407220:three_prime_UTR | 25.0% |
| ! | TTTAGAATTGGACCTTAAGT+TGG | - | tig0023279:5579-5598 | None:intergenic | 30.0% |
| TGGAATTTGAATTACGTTTG+TGG | + | tig0023279:5761-5780 | Msa1407220:intron | 30.0% | |
| GGAATTTGAATTACGTTTGT+GGG | + | tig0023279:5762-5781 | Msa1407220:intron | 30.0% | |
| ! | ACTGTACATTTTTCTTCTCA+TGG | + | tig0023279:5839-5858 | Msa1407220:intron | 30.0% |
| ! | TTTTGATCATGCAGGTAAAT+TGG | + | tig0023279:6038-6057 | Msa1407220:intron | 30.0% |
| !! | TTTGTAGTGTTTCTGGTAAT+AGG | + | tig0023279:6180-6199 | Msa1407220:intron | 30.0% |
| AGAATGAATAAAGAGATGCA+TGG | - | tig0023279:6418-6437 | None:intergenic | 30.0% | |
| ATGCATCTCTTTATTCATTC+TGG | + | tig0023279:6417-6436 | Msa1407220:intron | 30.0% | |
| ATGCATGTTATATTGCAATG+TGG | + | tig0023279:6501-6520 | Msa1407220:intron | 30.0% | |
| ! | AAGTGTTTGTGACATTGATT+TGG | + | tig0023279:6690-6709 | Msa1407220:intron | 30.0% |
| !! | AGTGTTTGTGACATTGATTT+GGG | + | tig0023279:6691-6710 | Msa1407220:intron | 30.0% |
| AACATGTTGCGTCAAATTTA+AGG | - | tig0023279:7105-7124 | None:intergenic | 30.0% | |
| ! | TTTTTCACATTGACACAAAC+TGG | + | tig0023279:7167-7186 | Msa1407220:intron | 30.0% |
| ACACAAACTGGTTACATTAT+GGG | + | tig0023279:7179-7198 | Msa1407220:intron | 30.0% | |
| CAACATATGCAAATGTGATT+CGG | - | tig0023279:7302-7321 | None:intergenic | 30.0% | |
| ATTCAATCTATTGCTGTAGA+TGG | + | tig0023279:7526-7545 | Msa1407220:CDS | 30.0% | |
| TGATGCATACAAGAAATCAT+TGG | + | tig0023279:7573-7592 | Msa1407220:CDS | 30.0% | |
| TGAAAAAAATTAGGGGAGAA+AGG | + | tig0023279:7665-7684 | Msa1407220:CDS | 30.0% | |
| TCAAACACTAATAGTGTCTT+CGG | + | tig0023279:7725-7744 | Msa1407220:exon | 30.0% | |
| TCAAACATCAATACTGACAT+TGG | + | tig0023279:7757-7776 | Msa1407220:three_prime_UTR | 30.0% | |
| GTTGATCATAAAATGAGCAT+CGG | + | tig0023279:7973-7992 | Msa1407220:three_prime_UTR | 30.0% | |
| !!! | GATTTTAAAGTTTTCAGTGG+AGG | + | tig0023279:8048-8067 | Msa1407220:three_prime_UTR | 30.0% |
| ATTCAAGAAGGAAGTGACAT+AGG | - | tig0023279:5473-5492 | None:intergenic | 35.0% | |
| ! | TATGTCACTTCCTTCTTGAA+TGG | + | tig0023279:5472-5491 | Msa1407220:CDS | 35.0% |
| ! | GCTTAATCTTTGGGGATTTA+GGG | - | tig0023279:5552-5571 | None:intergenic | 35.0% |
| ! | TGCTTAATCTTTGGGGATTT+AGG | - | tig0023279:5553-5572 | None:intergenic | 35.0% |
| !! | TTGGTAGTGCTTAATCTTTG+GGG | - | tig0023279:5560-5579 | None:intergenic | 35.0% |
| !! | GTTGGTAGTGCTTAATCTTT+GGG | - | tig0023279:5561-5580 | None:intergenic | 35.0% |
| !! | AGTTGGTAGTGCTTAATCTT+TGG | - | tig0023279:5562-5581 | None:intergenic | 35.0% |
| GATTAAGCACTACCAACTTA+AGG | + | tig0023279:5564-5583 | Msa1407220:CDS | 35.0% | |
| !!! | GAATTTTGTTTTGTGGGCAA+TGG | - | tig0023279:5707-5726 | None:intergenic | 35.0% |
| TGTTGTGTATGTTTATTGGC+AGG | + | tig0023279:5882-5901 | Msa1407220:intron | 35.0% | |
| ! | AAAGCTTTTGGATGACATAG+TGG | + | tig0023279:5909-5928 | Msa1407220:CDS | 35.0% |
| ! | CTGGTTTAGAATGTCTAAAC+AGG | - | tig0023279:6011-6030 | None:intergenic | 35.0% |
| CTGTTTAGACATTCTAAACC+AGG | + | tig0023279:6009-6028 | Msa1407220:CDS | 35.0% | |
| GCATGATCAAAAACTATTCC+TGG | - | tig0023279:6030-6049 | None:intergenic | 35.0% | |
| ! | GGAATAGTTTTTGATCATGC+AGG | + | tig0023279:6030-6049 | Msa1407220:CDS | 35.0% |
| !!! | TTGATAGTTTTGGACTTTGC+TGG | + | tig0023279:6118-6137 | Msa1407220:intron | 35.0% |
| ! | ACTACAGAAAAGCATGCTTT+GGG | + | tig0023279:6592-6611 | Msa1407220:intron | 35.0% |
| TGCCAACTAAACCTGAATAA+TGG | + | tig0023279:6643-6662 | Msa1407220:intron | 35.0% | |
| ! | GACCATTATTCAGGTTTAGT+TGG | - | tig0023279:6648-6667 | None:intergenic | 35.0% |
| AATAGCTTGGACCATTATTC+AGG | - | tig0023279:6657-6676 | None:intergenic | 35.0% | |
| TAATGGTCCAAGCTATTACT+TGG | + | tig0023279:6660-6679 | Msa1407220:intron | 35.0% | |
| TCTACAAAATCCCATTTCAG+TGG | + | tig0023279:6947-6966 | Msa1407220:intron | 35.0% | |
| GACACAAACTGGTTACATTA+TGG | + | tig0023279:7178-7197 | Msa1407220:intron | 35.0% | |
| TGGTTACATTATGGGTTTGA+TGG | + | tig0023279:7187-7206 | Msa1407220:intron | 35.0% | |
| TGTTTACGCTTACATCTATG+TGG | + | tig0023279:7320-7339 | Msa1407220:intron | 35.0% | |
| TTCTCATCAATATCTTCTCC+CGG | - | tig0023279:7390-7409 | None:intergenic | 35.0% | |
| ACAACATGCACATACATCTA+TGG | - | tig0023279:7437-7456 | None:intergenic | 35.0% | |
| TACCTCAACAGTTTAGAAGA+CGG | + | tig0023279:7503-7522 | Msa1407220:intron | 35.0% | |
| AAAAAATTAGGGGAGAAAGG+TGG | + | tig0023279:7668-7687 | Msa1407220:CDS | 35.0% | |
| !!! | ATCGCTGTTTTGTTATTGCA+AGG | + | tig0023279:7946-7965 | Msa1407220:three_prime_UTR | 35.0% |
| ATGGCAGAAGAACCAAACAA+TGG | + | tig0023279:5370-5389 | Msa1407220:CDS | 40.0% | |
| !! | CTTCTTGGTGTCATTGTTGT+TGG | - | tig0023279:5509-5528 | None:intergenic | 40.0% |
| ATCTATTCCTGTCCTAGATG+AGG | + | tig0023279:5957-5976 | Msa1407220:CDS | 40.0% | |
| GATCCTAATGTCGATGATTG+CGG | + | tig0023279:5979-5998 | Msa1407220:CDS | 40.0% | |
| !!! | TAGTTTTGGACTTTGCTGGT+TGG | + | tig0023279:6122-6141 | Msa1407220:intron | 40.0% |
| TGTCAAAGAACAATGGTGAC+TGG | - | tig0023279:6216-6235 | None:intergenic | 40.0% | |
| ATTGGGTAAAAGCCACTGAT+TGG | + | tig0023279:6274-6293 | Msa1407220:intron | 40.0% | |
| ! | TTGGGTAAAAGCCACTGATT+GGG | + | tig0023279:6275-6294 | Msa1407220:intron | 40.0% |
| TTAACCACAGACAAAGAGCA+GGG | - | tig0023279:6372-6391 | None:intergenic | 40.0% | |
| CTTTGTCTGTGGTTAAGAAG+TGG | + | tig0023279:6376-6395 | Msa1407220:intron | 40.0% | |
| !! | AGTTTGTTAACCACTCTGAG+AGG | + | tig0023279:6550-6569 | Msa1407220:intron | 40.0% |
| ACAATGATAACCTCTCAGAG+TGG | - | tig0023279:6563-6582 | None:intergenic | 40.0% | |
| ! | CACTACAGAAAAGCATGCTT+TGG | + | tig0023279:6591-6610 | Msa1407220:intron | 40.0% |
| ! | CTACAGAAAAGCATGCTTTG+GGG | + | tig0023279:6593-6612 | Msa1407220:intron | 40.0% |
| ! | TACAGAAAAGCATGCTTTGG+GGG | + | tig0023279:6594-6613 | Msa1407220:intron | 40.0% |
| CCAGCAGTAAGTTATAGCAT+AGG | - | tig0023279:6621-6640 | None:intergenic | 40.0% | |
| CCTATGCTATAACTTACTGC+TGG | + | tig0023279:6618-6637 | Msa1407220:intron | 40.0% | |
| GTCCAAGCTATTACTTGGAT+TGG | + | tig0023279:6665-6684 | Msa1407220:intron | 40.0% | |
| GTCCAATCCAAGTAATAGCT+TGG | - | tig0023279:6670-6689 | None:intergenic | 40.0% | |
| TCCATTCACTCCACTGAAAT+GGG | - | tig0023279:6960-6979 | None:intergenic | 40.0% | |
| TAAAAATCAGTCTGGCAGCT+GGG | - | tig0023279:7147-7166 | None:intergenic | 40.0% | |
| ATAAAAATCAGTCTGGCAGC+TGG | - | tig0023279:7148-7167 | None:intergenic | 40.0% | |
| ACAAGTTTAGGTCGTTTCCT+TGG | - | tig0023279:7366-7385 | None:intergenic | 40.0% | |
| ! | GAAACGACCTAAACTTGTTC+CGG | + | tig0023279:7368-7387 | Msa1407220:CDS | 40.0% |
| ! | AAACGACCTAAACTTGTTCC+GGG | + | tig0023279:7369-7388 | Msa1407220:CDS | 40.0% |
| ATCCGTCTTCTAAACTGTTG+AGG | - | tig0023279:7508-7527 | None:intergenic | 40.0% | |
| AAAAGCTAAAGCCAAGACAG+AGG | + | tig0023279:7624-7643 | Msa1407220:CDS | 40.0% | |
| AATTCTTTCCTCCTCTGTCT+TGG | - | tig0023279:7638-7657 | None:intergenic | 40.0% | |
| GATCTTAACCTGCATTTCCT+TGG | - | tig0023279:7707-7726 | None:intergenic | 40.0% | |
| CTGCTACAGTAGCCATTGTT+TGG | - | tig0023279:5385-5404 | None:intergenic | 45.0% | |
| CAAGAAGGAAGTGACATAGG+AGG | - | tig0023279:5470-5489 | None:intergenic | 45.0% | |
| GGCGGAAAATCCATTCAAGA+AGG | - | tig0023279:5485-5504 | None:intergenic | 45.0% | |
| !! | CTTGGTGTCATTGTTGTTGG+TGG | - | tig0023279:5506-5525 | None:intergenic | 45.0% |
| ! | TTGGCAGGCACAAAAGCTTT+TGG | + | tig0023279:5897-5916 | Msa1407220:intron | 45.0% |
| ! | TTAGGATCCTCATCTAGGAC+AGG | - | tig0023279:5967-5986 | None:intergenic | 45.0% |
| CGACATTAGGATCCTCATCT+AGG | - | tig0023279:5972-5991 | None:intergenic | 45.0% | |
| ATGCCGCAATCATCGACATT+AGG | - | tig0023279:5985-6004 | None:intergenic | 45.0% | |
| !! | TGGACTTTGCTGGTTGGTAA+TGG | + | tig0023279:6128-6147 | Msa1407220:intron | 45.0% |
| TTTGCTTACAGCCCAATCAG+TGG | - | tig0023279:6289-6308 | None:intergenic | 45.0% | |
| CTTAACCACAGACAAAGAGC+AGG | - | tig0023279:6373-6392 | None:intergenic | 45.0% | |
| TCCCATTTCAGTGGAGTGAA+TGG | + | tig0023279:6956-6975 | Msa1407220:intron | 45.0% | |
| CTCCATTCACTCCACTGAAA+TGG | - | tig0023279:6961-6980 | None:intergenic | 45.0% | |
| CATTTCAGTGGAGTGAATGG+AGG | + | tig0023279:6959-6978 | Msa1407220:intron | 45.0% | |
| ! | AATGGAGGTTTTTCCGTCGT+TGG | + | tig0023279:6974-6993 | Msa1407220:intron | 45.0% |
| TTACGACTTAGCACCAACGA+CGG | - | tig0023279:6990-7009 | None:intergenic | 45.0% | |
| CGCAACATGTTGCCATGATA+TGG | + | tig0023279:7114-7133 | Msa1407220:intron | 45.0% | |
| AGTTTAGGTCGTTTCCTTGG+CGG | - | tig0023279:7363-7382 | None:intergenic | 45.0% | |
| TCTTCTCCCGGAACAAGTTT+AGG | - | tig0023279:7378-7397 | None:intergenic | 45.0% | |
| AGAAAGGTGGTTACCATCCA+TGG | + | tig0023279:7681-7700 | Msa1407220:CDS | 45.0% | |
| AATAGTGTCTTCGGAGATGC+AGG | + | tig0023279:7734-7753 | Msa1407220:exon | 45.0% | |
| !!! | AATATATTTTTAGATATTAA+TGG | + | tig0023279:7057-7076 | Msa1407220:intron | 5.0% |
| AATGGCTACTGTAGCAGCAG+TGG | + | tig0023279:5388-5407 | Msa1407220:CDS | 50.0% | |
| AGTGACATAGGAGGAGGTTC+CGG | - | tig0023279:5461-5480 | None:intergenic | 50.0% | |
| GAAGGAAGTGACATAGGAGG+AGG | - | tig0023279:5467-5486 | None:intergenic | 50.0% | |
| !! | GGTGTCATTGTTGTTGGTGG+CGG | - | tig0023279:5503-5522 | None:intergenic | 50.0% |
| GATGCATGGCATGCTGATCT+GGG | - | tig0023279:6404-6423 | None:intergenic | 50.0% | |
| AGATGCATGGCATGCTGATC+TGG | - | tig0023279:6405-6424 | None:intergenic | 50.0% | |
| CTGGGTTGCACACCATATCA+TGG | - | tig0023279:7129-7148 | None:intergenic | 50.0% | |
| AGCTAAAGCCAAGACAGAGG+AGG | + | tig0023279:7627-7646 | Msa1407220:CDS | 50.0% | |
| TGCATTTCCTTGGCCATGGA+TGG | - | tig0023279:7697-7716 | None:intergenic | 50.0% | |
| ATCCATGGCCAAGGAAATGC+AGG | + | tig0023279:7696-7715 | Msa1407220:CDS | 50.0% | |
| AACCTGCATTTCCTTGGCCA+TGG | - | tig0023279:7701-7720 | None:intergenic | 50.0% | |
| AGCAGCAGTGGCGATGAAGA+CGG | + | tig0023279:5400-5419 | Msa1407220:CDS | 55.0% | |
| ATGAAGACGGTGACGCAGCA+TGG | + | tig0023279:5413-5432 | Msa1407220:CDS | 55.0% | |
| !! | GCAGCCATTGATTCCGTTGC+CGG | + | tig0023279:5439-5458 | Msa1407220:CDS | 55.0% |
| GGTTCCGGCAACGGAATCAA+TGG | - | tig0023279:5446-5465 | None:intergenic | 55.0% | |
| ATAGGAGGAGGTTCCGGCAA+CGG | - | tig0023279:5455-5474 | None:intergenic | 55.0% | |
| CACACCCTGCTCTTTGTCTG+TGG | + | tig0023279:6365-6384 | Msa1407220:intron | 55.0% | |
| AGGTCGTTTCCTTGGCGGTT+GGG | - | tig0023279:7358-7377 | None:intergenic | 55.0% | |
| TAGGTCGTTTCCTTGGCGGT+TGG | - | tig0023279:7359-7378 | None:intergenic | 55.0% | |
| GTGGTTACCATCCATGGCCA+AGG | + | tig0023279:7687-7706 | Msa1407220:CDS | 55.0% | |
| CAGATGAACCCCAACCGCCA+AGG | + | tig0023279:7346-7365 | Msa1407220:intron | 60.0% | |
| GGTCGTTTCCTTGGCGGTTG+GGG | - | tig0023279:7357-7376 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023279 | gene | 5363 | 8097 | 5363 | ID=Msa1407220;Name=Msa1407220 |
| tig0023279 | mRNA | 5363 | 8097 | 5363 | ID=Msa1407220-mRNA-1;Parent=Msa1407220;Name=Msa1407220-mRNA-1;_AED=0.06;_eAED=0.06;_QI=7|1|1|1|1|1|4|362|218 |
| tig0023279 | exon | 5363 | 5585 | 5363 | ID=Msa1407220-mRNA-1:exon:24997;Parent=Msa1407220-mRNA-1 |
| tig0023279 | exon | 5904 | 6051 | 5904 | ID=Msa1407220-mRNA-1:exon:24998;Parent=Msa1407220-mRNA-1 |
| tig0023279 | exon | 7349 | 7419 | 7349 | ID=Msa1407220-mRNA-1:exon:24999;Parent=Msa1407220-mRNA-1 |
| tig0023279 | exon | 7514 | 8097 | 7514 | ID=Msa1407220-mRNA-1:exon:25000;Parent=Msa1407220-mRNA-1 |
| tig0023279 | five_prime_UTR | 5363 | 5369 | 5363 | ID=Msa1407220-mRNA-1:five_prime_utr;Parent=Msa1407220-mRNA-1 |
| tig0023279 | CDS | 5370 | 5585 | 5370 | ID=Msa1407220-mRNA-1:cds;Parent=Msa1407220-mRNA-1 |
| tig0023279 | CDS | 5904 | 6051 | 5904 | ID=Msa1407220-mRNA-1:cds;Parent=Msa1407220-mRNA-1 |
| tig0023279 | CDS | 7349 | 7419 | 7349 | ID=Msa1407220-mRNA-1:cds;Parent=Msa1407220-mRNA-1 |
| tig0023279 | CDS | 7514 | 7735 | 7514 | ID=Msa1407220-mRNA-1:cds;Parent=Msa1407220-mRNA-1 |
| tig0023279 | three_prime_UTR | 7736 | 8097 | 7736 | ID=Msa1407220-mRNA-1:three_prime_utr;Parent=Msa1407220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
