Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1206050 | G7JE21 | 94.884 | 215 | 11 | 0 | 3 | 217 | 4 | 218 | 5.67e-134 | 384 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa1206050 | 0.813509 | 2.469479e-51 | -8.615850e-47 |
| Msa0061290 | Msa1206050 | 0.802067 | 6.689995e-49 | -8.615850e-47 |
| Msa0157290 | Msa1206050 | 0.813591 | 2.369039e-51 | -8.615850e-47 |
| Msa0222700 | Msa1206050 | 0.801835 | 7.465357e-49 | -8.615850e-47 |
| Msa0379770 | Msa1206050 | 0.813075 | 3.074903e-51 | -8.615850e-47 |
| Msa0264040 | Msa1206050 | 0.807763 | 4.312506e-50 | -8.615850e-47 |
| Msa0339320 | Msa1206050 | 0.807070 | 6.048416e-50 | -8.615850e-47 |
| Msa1206050 | Msa1209460 | 0.800742 | 1.249738e-48 | -8.615850e-47 |
| Msa1206050 | Msa1222850 | 0.811714 | 6.098535e-51 | -8.615850e-47 |
| Msa1206050 | Msa1297060 | 0.834565 | 2.784881e-56 | -8.615850e-47 |
| Msa1206050 | Msa1302830 | 0.801691 | 7.990478e-49 | -8.615850e-47 |
| Msa1206050 | Msa1330410 | 0.811254 | 7.674315e-51 | -8.615850e-47 |
| Msa1206050 | Msa1391770 | 0.807454 | 5.014712e-50 | -8.615850e-47 |
| Msa1206050 | Msa1407220 | 0.996986 | 3.883509e-235 | -8.615850e-47 |
| Msa0880140 | Msa1206050 | 0.809638 | 1.714085e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1206050 | MtrunA17_Chr4g0054061 | 94.884 | 215 | 11 | 0 | 3 | 217 | 4 | 218 | 1.09e-137 | 384 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1206050 | AT3G49890.1 | 46.396 | 222 | 105 | 5 | 1 | 218 | 1 | 212 | 2.86e-56 | 178 |
| Msa1206050 | AT3G49890.2 | 41.200 | 250 | 105 | 6 | 1 | 218 | 1 | 240 | 2.68e-50 | 164 |
Find 63 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTAATCTTTGGGGATTT+AGG | 0.177270 | 8_1:-62806018 | None:intergenic |
| ATTATCATTATGCTTCTTCT+TGG | 0.221055 | 8_1:-62805989 | None:intergenic |
| GCTTAATCTTTGGGGATTTA+GGG | 0.228273 | 8_1:-62806017 | None:intergenic |
| AGTTGGTAGTGCTTAATCTT+TGG | 0.259629 | 8_1:-62806027 | None:intergenic |
| GTTGGTAGTGCTTAATCTTT+GGG | 0.273130 | 8_1:-62806026 | None:intergenic |
| CTTCTTGGTGTCATTGTTGT+TGG | 0.276148 | 8_1:-62805974 | None:intergenic |
| TCTTCTCCCGGAACAAGTTT+AGG | 0.314989 | 8_1:-62807845 | None:intergenic |
| TTGGCAGGCACAAAAGCTTT+TGG | 0.334252 | 8_1:+62806365 | Msa1206050:intron |
| TATGTCACTTCCTTCTTGAA+TGG | 0.336482 | 8_1:+62805940 | Msa1206050:CDS |
| GCAGCCATTGATTCCGTTGC+CGG | 0.343503 | 8_1:+62805907 | Msa1206050:CDS |
| ATTCAATCTATTGCTGTAGA+TGG | 0.344191 | 8_1:+62807996 | Msa1206050:CDS |
| CTGCTACAGTAGCCATTGTT+TGG | 0.353921 | 8_1:-62805850 | None:intergenic |
| AGGTCGTTTCCTTGGCGGTT+GGG | 0.354183 | 8_1:-62807825 | None:intergenic |
| AATTCTTTCCTCCTCTGTCT+TGG | 0.368441 | 8_1:-62808105 | None:intergenic |
| GAAACGACCTAAACTTGTTC+CGG | 0.373276 | 8_1:+62807838 | Msa1206050:CDS |
| CTGGTTTAGAATGTCTAAAC+AGG | 0.391452 | 8_1:-62806476 | None:intergenic |
| GATCTTAACCTGCATTTCCT+TGG | 0.392728 | 8_1:-62808174 | None:intergenic |
| ATGCCGCAATCATCGACATT+AGG | 0.437333 | 8_1:-62806450 | None:intergenic |
| AGTGACATAGGAGGAGGTTC+CGG | 0.442671 | 8_1:-62805926 | None:intergenic |
| GGTCGTTTCCTTGGCGGTTG+GGG | 0.447469 | 8_1:-62807824 | None:intergenic |
| AACCTGCATTTCCTTGGCCA+TGG | 0.449954 | 8_1:-62808168 | None:intergenic |
| CGACATTAGGATCCTCATCT+AGG | 0.450341 | 8_1:-62806437 | None:intergenic |
| TAGGTCGTTTCCTTGGCGGT+TGG | 0.450947 | 8_1:-62807826 | None:intergenic |
| AAACGACCTAAACTTGTTCC+GGG | 0.451262 | 8_1:+62807839 | Msa1206050:CDS |
| ACAAGTTTAGGTCGTTTCCT+TGG | 0.460078 | 8_1:-62807833 | None:intergenic |
| TCAAACACTAATAGTGTCTT+CGG | 0.460581 | 8_1:+62808195 | Msa1206050:exon |
| GATTAAGCACTACCAACTTA+AGG | 0.464419 | 8_1:+62806032 | Msa1206050:CDS |
| CTTGGTGTCATTGTTGTTGG+TGG | 0.472021 | 8_1:-62805971 | None:intergenic |
| AATAGTGTCTTCGGAGATGC+AGG | 0.494241 | 8_1:+62808204 | Msa1206050:exon |
| TGATGCATACAAGAAATCAT+TGG | 0.494355 | 8_1:+62808043 | Msa1206050:CDS |
| TTCTCATCAATATCTTCTCC+CGG | 0.497015 | 8_1:-62807857 | None:intergenic |
| TTTAGAATTGGACCTTAAGT+TGG | 0.504850 | 8_1:-62806044 | None:intergenic |
| TAAACAACATTAAAGTAAAG+AGG | 0.505007 | 8_1:-62808264 | None:intergenic |
| TGCATTTCCTTGGCCATGGA+TGG | 0.510483 | 8_1:-62808164 | None:intergenic |
| GGTTCCGGCAACGGAATCAA+TGG | 0.515860 | 8_1:-62805911 | None:intergenic |
| AGTTTAGGTCGTTTCCTTGG+CGG | 0.526801 | 8_1:-62807830 | None:intergenic |
| ATCCATGGCCAAGGAAATGC+AGG | 0.528018 | 8_1:+62808166 | Msa1206050:CDS |
| AGAAAGGTGGTTACCATCCA+TGG | 0.528142 | 8_1:+62808151 | Msa1206050:CDS |
| GAAACAACGTTGTAGAATGC+AGG | 0.539960 | 8_1:-62808549 | None:intergenic |
| CTGTTTAGACATTCTAAACC+AGG | 0.547528 | 8_1:+62806477 | Msa1206050:CDS |
| GGTGTCATTGTTGTTGGTGG+CGG | 0.554093 | 8_1:-62805968 | None:intergenic |
| ATGAAGACGGTGACGCAGCA+TGG | 0.564455 | 8_1:+62805881 | Msa1206050:CDS |
| ATAGGAGGAGGTTCCGGCAA+CGG | 0.566478 | 8_1:-62805920 | None:intergenic |
| TTAGGATCCTCATCTAGGAC+AGG | 0.568212 | 8_1:-62806432 | None:intergenic |
| ATTCAAGAAGGAAGTGACAT+AGG | 0.569799 | 8_1:-62805938 | None:intergenic |
| TCAAACATCAATACTGACAT+TGG | 0.572830 | 8_1:+62808227 | Msa1206050:three_prime_UTR |
| TATTGATGAGAAATCAAAGA+AGG | 0.576415 | 8_1:+62807868 | Msa1206050:CDS |
| GAAGGAAGTGACATAGGAGG+AGG | 0.580901 | 8_1:-62805932 | None:intergenic |
| GTTGATCATAAAATGAGCAT+CGG | 0.585046 | 8_1:+62808443 | Msa1206050:three_prime_UTR |
| ATCTATTCCTGTCCTAGATG+AGG | 0.593312 | 8_1:+62806425 | Msa1206050:CDS |
| TACCTCAACAGTTTAGAAGA+CGG | 0.593760 | 8_1:+62807973 | Msa1206050:intron |
| GATCCTAATGTCGATGATTG+CGG | 0.595195 | 8_1:+62806447 | Msa1206050:CDS |
| AATGGCTACTGTAGCAGCAG+TGG | 0.604176 | 8_1:+62805856 | Msa1206050:CDS |
| CAGATGAACCCCAACCGCCA+AGG | 0.604989 | 8_1:+62807816 | Msa1206050:intron |
| AGCAGCAGTGGCGATGAAGA+CGG | 0.605287 | 8_1:+62805868 | Msa1206050:CDS |
| GGCGGAAAATCCATTCAAGA+AGG | 0.609902 | 8_1:-62805950 | None:intergenic |
| AAAAGCTAAAGCCAAGACAG+AGG | 0.615616 | 8_1:+62808094 | Msa1206050:CDS |
| TTGGTAGTGCTTAATCTTTG+GGG | 0.616398 | 8_1:-62806025 | None:intergenic |
| AGCTAAAGCCAAGACAGAGG+AGG | 0.620686 | 8_1:+62808097 | Msa1206050:CDS |
| CAAGAAGGAAGTGACATAGG+AGG | 0.628507 | 8_1:-62805935 | None:intergenic |
| GTGGTTACCATCCATGGCCA+AGG | 0.644984 | 8_1:+62808157 | Msa1206050:CDS |
| ATGGCAGAAGAACCAAACAA+TGG | 0.702147 | 8_1:+62805838 | Msa1206050:CDS |
| AAACCTGAAAGAGTGAACAA+TGG | 0.716102 | 8_1:+62805819 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGCAAAAATAAAATAAAATT+AGG | + | chr8_1:62806127-62806146 | Msa1206050:intron | 10.0% |
| !!! | ATAAAATAAAATTAGGATTT+TGG | + | chr8_1:62806134-62806153 | Msa1206050:intron | 10.0% |
| !!! | AAAAATGAGAAATTTAGAAT+TGG | - | chr8_1:62806059-62806078 | None:intergenic | 15.0% |
| !!! | TTTTAGATTTTTGATAGTTT+TGG | + | chr8_1:62806576-62806595 | Msa1206050:intron | 15.0% |
| !!! | CAACTTTTAAAAAGAAAAAT+AGG | - | chr8_1:62806624-62806643 | None:intergenic | 15.0% |
| !! | TAAGTTAAATAAATAGTGTA+AGG | + | chr8_1:62807704-62807723 | Msa1206050:intron | 15.0% |
| !! | AAGTTAAATAAATAGTGTAA+GGG | + | chr8_1:62807705-62807724 | Msa1206050:intron | 15.0% |
| !! | TTGAGAAATTGAAAAAAATT+AGG | + | chr8_1:62808126-62808145 | Msa1206050:CDS | 15.0% |
| !! | TGAGAAATTGAAAAAAATTA+GGG | + | chr8_1:62808127-62808146 | Msa1206050:CDS | 15.0% |
| !!! | AAAACTGAATTTTGTTTTGT+GGG | - | chr8_1:62806181-62806200 | None:intergenic | 20.0% |
| !!! | AAAAACTGAATTTTGTTTTG+TGG | - | chr8_1:62806182-62806201 | None:intergenic | 20.0% |
| !! | TTTATGTTGTGTATGTTTAT+TGG | + | chr8_1:62806346-62806365 | Msa1206050:intron | 20.0% |
| !! | ATATAAATGTCAAAGAACAA+TGG | - | chr8_1:62806691-62806710 | None:intergenic | 20.0% |
| !!! | ATTAGAGACTAAATTCATTT+TGG | + | chr8_1:62807369-62807388 | Msa1206050:intron | 20.0% |
| !!! | ACAACTTTTATTTTTTTGAC+AGG | + | chr8_1:62807479-62807498 | Msa1206050:intron | 20.0% |
| !!! | TTTTAGATATTAATGGTTTG+AGG | + | chr8_1:62807534-62807553 | Msa1206050:intron | 20.0% |
| !! | AGTTAAATAAATAGTGTAAG+GGG | + | chr8_1:62807706-62807725 | Msa1206050:intron | 20.0% |
| !! | GAGAAATTGAAAAAAATTAG+GGG | + | chr8_1:62808128-62808147 | Msa1206050:CDS | 20.0% |
| !! | TAAACAACATTAAAGTAAAG+AGG | - | chr8_1:62808267-62808286 | None:intergenic | 20.0% |
| !!! | AAAAATTGTTGATTTGTTAG+TGG | + | chr8_1:62808303-62808322 | Msa1206050:three_prime_UTR | 20.0% |
| !!! | TTTATAACTACATTGTTTTG+AGG | - | chr8_1:62808338-62808357 | None:intergenic | 20.0% |
| !!! | AATGATTTTAAAGTTTTCAG+TGG | + | chr8_1:62808515-62808534 | Msa1206050:three_prime_UTR | 20.0% |
| ! | ATTATCATTATGCTTCTTCT+TGG | - | chr8_1:62805992-62806011 | None:intergenic | 25.0% |
| ! | GTAACAAAAAAACATGAACT+TGG | - | chr8_1:62806209-62806228 | None:intergenic | 25.0% |
| !!! | AGTTCATGTTTTTTTGTTAC+TGG | + | chr8_1:62806209-62806228 | Msa1206050:intron | 25.0% |
| !! | ATTTGCAATTTTGCAAAAGA+AGG | - | chr8_1:62806262-62806281 | None:intergenic | 25.0% |
| !! | ATTTTTCTTCTCATGGTTTT+TGG | + | chr8_1:62806314-62806333 | Msa1206050:intron | 25.0% |
| !!! | TTGTTTTTTTGTAGTGTTTC+TGG | + | chr8_1:62806641-62806660 | Msa1206050:intron | 25.0% |
| ! | AAACAAGAAAAAAGCTGAAT+TGG | + | chr8_1:62806724-62806743 | Msa1206050:intron | 25.0% |
| ! | AACAAGAAAAAAGCTGAATT+GGG | + | chr8_1:62806725-62806744 | Msa1206050:intron | 25.0% |
| !!! | AGACTAAATTCATTTTGGTT+TGG | + | chr8_1:62807374-62807393 | Msa1206050:intron | 25.0% |
| !! | TTTGTAGAGAATTTGACTTA+TGG | - | chr8_1:62807405-62807424 | None:intergenic | 25.0% |
| ! | TACAAGTAAACTAGTTGTTA+CGG | - | chr8_1:62807505-62807524 | None:intergenic | 25.0% |
| ! | GTGAAAAATAAAAATCAGTC+TGG | - | chr8_1:62807625-62807644 | None:intergenic | 25.0% |
| ! | TATTGATGAGAAATCAAAGA+AGG | + | chr8_1:62807868-62807887 | Msa1206050:CDS | 25.0% |
| !!! | TCTTGTATTTTTATCAGTGA+CGG | + | chr8_1:62808385-62808404 | Msa1206050:three_prime_UTR | 25.0% |
| ! | TTTAGAATTGGACCTTAAGT+TGG | - | chr8_1:62806047-62806066 | None:intergenic | 30.0% |
| TGGAATTTGAATTACGTTTG+TGG | + | chr8_1:62806229-62806248 | Msa1206050:intron | 30.0% | |
| GGAATTTGAATTACGTTTGT+GGG | + | chr8_1:62806230-62806249 | Msa1206050:intron | 30.0% | |
| ! | ACTGTACATTTTTCTTCTCA+TGG | + | chr8_1:62806307-62806326 | Msa1206050:intron | 30.0% |
| ! | TTTTGATCATGCAGGTAAAT+TGG | + | chr8_1:62806506-62806525 | Msa1206050:intron | 30.0% |
| !! | TTTGTAGTGTTTCTGGTAAT+AGG | + | chr8_1:62806648-62806667 | Msa1206050:intron | 30.0% |
| AGAATGAATAAAGAGATGCA+TGG | - | chr8_1:62806887-62806906 | None:intergenic | 30.0% | |
| ATGCATCTCTTTATTCATTC+TGG | + | chr8_1:62806886-62806905 | Msa1206050:intron | 30.0% | |
| ATGCATGTTATATTGCAATG+TGG | + | chr8_1:62806970-62806989 | Msa1206050:intron | 30.0% | |
| ! | AAGTGTTTGTGACATTGATT+TGG | + | chr8_1:62807159-62807178 | Msa1206050:intron | 30.0% |
| !! | AGTGTTTGTGACATTGATTT+GGG | + | chr8_1:62807160-62807179 | Msa1206050:intron | 30.0% |
| AACATGTTGCGTCAAATTTA+AGG | - | chr8_1:62807575-62807594 | None:intergenic | 30.0% | |
| ! | TTTTTCACATTGACACAAAC+TGG | + | chr8_1:62807637-62807656 | Msa1206050:intron | 30.0% |
| ACACAAACTGGTTACATTAT+GGG | + | chr8_1:62807649-62807668 | Msa1206050:intron | 30.0% | |
| CAACATATGCAAATGTGATT+CGG | - | chr8_1:62807772-62807791 | None:intergenic | 30.0% | |
| ATTCAATCTATTGCTGTAGA+TGG | + | chr8_1:62807996-62808015 | Msa1206050:CDS | 30.0% | |
| TGATGCATACAAGAAATCAT+TGG | + | chr8_1:62808043-62808062 | Msa1206050:CDS | 30.0% | |
| TGAAAAAAATTAGGGGAGAA+AGG | + | chr8_1:62808135-62808154 | Msa1206050:CDS | 30.0% | |
| TCAAACACTAATAGTGTCTT+CGG | + | chr8_1:62808195-62808214 | Msa1206050:exon | 30.0% | |
| TCAAACATCAATACTGACAT+TGG | + | chr8_1:62808227-62808246 | Msa1206050:three_prime_UTR | 30.0% | |
| GTTGATCATAAAATGAGCAT+CGG | + | chr8_1:62808443-62808462 | Msa1206050:three_prime_UTR | 30.0% | |
| !!! | GATTTTAAAGTTTTCAGTGG+AGG | + | chr8_1:62808518-62808537 | Msa1206050:three_prime_UTR | 30.0% |
| ATTCAAGAAGGAAGTGACAT+AGG | - | chr8_1:62805941-62805960 | None:intergenic | 35.0% | |
| ! | TATGTCACTTCCTTCTTGAA+TGG | + | chr8_1:62805940-62805959 | Msa1206050:CDS | 35.0% |
| ! | GCTTAATCTTTGGGGATTTA+GGG | - | chr8_1:62806020-62806039 | None:intergenic | 35.0% |
| ! | TGCTTAATCTTTGGGGATTT+AGG | - | chr8_1:62806021-62806040 | None:intergenic | 35.0% |
| !! | TTGGTAGTGCTTAATCTTTG+GGG | - | chr8_1:62806028-62806047 | None:intergenic | 35.0% |
| !! | GTTGGTAGTGCTTAATCTTT+GGG | - | chr8_1:62806029-62806048 | None:intergenic | 35.0% |
| !! | AGTTGGTAGTGCTTAATCTT+TGG | - | chr8_1:62806030-62806049 | None:intergenic | 35.0% |
| GATTAAGCACTACCAACTTA+AGG | + | chr8_1:62806032-62806051 | Msa1206050:CDS | 35.0% | |
| !!! | GAATTTTGTTTTGTGGGCAA+TGG | - | chr8_1:62806175-62806194 | None:intergenic | 35.0% |
| TGTTGTGTATGTTTATTGGC+AGG | + | chr8_1:62806350-62806369 | Msa1206050:intron | 35.0% | |
| ! | AAAGCTTTTGGATGACATAG+TGG | + | chr8_1:62806377-62806396 | Msa1206050:CDS | 35.0% |
| ! | CTGGTTTAGAATGTCTAAAC+AGG | - | chr8_1:62806479-62806498 | None:intergenic | 35.0% |
| CTGTTTAGACATTCTAAACC+AGG | + | chr8_1:62806477-62806496 | Msa1206050:CDS | 35.0% | |
| GCATGATCAAAAACTATTCC+TGG | - | chr8_1:62806498-62806517 | None:intergenic | 35.0% | |
| ! | GGAATAGTTTTTGATCATGC+AGG | + | chr8_1:62806498-62806517 | Msa1206050:CDS | 35.0% |
| !!! | TTGATAGTTTTGGACTTTGC+TGG | + | chr8_1:62806586-62806605 | Msa1206050:intron | 35.0% |
| ! | ACTACAGAAAAGCATGCTTT+GGG | + | chr8_1:62807061-62807080 | Msa1206050:intron | 35.0% |
| TGCCAACTAAACCTGAATAA+TGG | + | chr8_1:62807112-62807131 | Msa1206050:intron | 35.0% | |
| ! | GACCATTATTCAGGTTTAGT+TGG | - | chr8_1:62807117-62807136 | None:intergenic | 35.0% |
| AATAGCTTGGACCATTATTC+AGG | - | chr8_1:62807126-62807145 | None:intergenic | 35.0% | |
| TAATGGTCCAAGCTATTACT+TGG | + | chr8_1:62807129-62807148 | Msa1206050:intron | 35.0% | |
| TCTACAAAATCCCATTTCAG+TGG | + | chr8_1:62807417-62807436 | Msa1206050:intron | 35.0% | |
| GACACAAACTGGTTACATTA+TGG | + | chr8_1:62807648-62807667 | Msa1206050:intron | 35.0% | |
| TGGTTACATTATGGGTTTGA+TGG | + | chr8_1:62807657-62807676 | Msa1206050:intron | 35.0% | |
| TGTTTACGCTTACATCTATG+TGG | + | chr8_1:62807790-62807809 | Msa1206050:intron | 35.0% | |
| TTCTCATCAATATCTTCTCC+CGG | - | chr8_1:62807860-62807879 | None:intergenic | 35.0% | |
| ACAACATGCACATACATCTA+TGG | - | chr8_1:62807907-62807926 | None:intergenic | 35.0% | |
| TACCTCAACAGTTTAGAAGA+CGG | + | chr8_1:62807973-62807992 | Msa1206050:intron | 35.0% | |
| AAAAAATTAGGGGAGAAAGG+TGG | + | chr8_1:62808138-62808157 | Msa1206050:CDS | 35.0% | |
| !!! | ATCGCTGTTTTGTTATTGCA+AGG | + | chr8_1:62808416-62808435 | Msa1206050:three_prime_UTR | 35.0% |
| ATGGCAGAAGAACCAAACAA+TGG | + | chr8_1:62805838-62805857 | Msa1206050:CDS | 40.0% | |
| !! | CTTCTTGGTGTCATTGTTGT+TGG | - | chr8_1:62805977-62805996 | None:intergenic | 40.0% |
| ATCTATTCCTGTCCTAGATG+AGG | + | chr8_1:62806425-62806444 | Msa1206050:CDS | 40.0% | |
| GATCCTAATGTCGATGATTG+CGG | + | chr8_1:62806447-62806466 | Msa1206050:CDS | 40.0% | |
| !!! | TAGTTTTGGACTTTGCTGGT+TGG | + | chr8_1:62806590-62806609 | Msa1206050:intron | 40.0% |
| TGTCAAAGAACAATGGTGAC+TGG | - | chr8_1:62806684-62806703 | None:intergenic | 40.0% | |
| ATTGGGTAAAAGCCACTGAT+TGG | + | chr8_1:62806742-62806761 | Msa1206050:intron | 40.0% | |
| ! | TTGGGTAAAAGCCACTGATT+GGG | + | chr8_1:62806743-62806762 | Msa1206050:intron | 40.0% |
| TTAACCACAGACAAAGAGCA+GGG | - | chr8_1:62806841-62806860 | None:intergenic | 40.0% | |
| CTTTGTCTGTGGTTAAGAAG+TGG | + | chr8_1:62806845-62806864 | Msa1206050:intron | 40.0% | |
| !! | AGTTTGTTAACCACTCTGAG+AGG | + | chr8_1:62807019-62807038 | Msa1206050:intron | 40.0% |
| ACAATGATAACCTCTCAGAG+TGG | - | chr8_1:62807032-62807051 | None:intergenic | 40.0% | |
| ! | CACTACAGAAAAGCATGCTT+TGG | + | chr8_1:62807060-62807079 | Msa1206050:intron | 40.0% |
| ! | CTACAGAAAAGCATGCTTTG+GGG | + | chr8_1:62807062-62807081 | Msa1206050:intron | 40.0% |
| ! | TACAGAAAAGCATGCTTTGG+GGG | + | chr8_1:62807063-62807082 | Msa1206050:intron | 40.0% |
| CCAGCAGTAAGTTATAGCAT+AGG | - | chr8_1:62807090-62807109 | None:intergenic | 40.0% | |
| CCTATGCTATAACTTACTGC+TGG | + | chr8_1:62807087-62807106 | Msa1206050:intron | 40.0% | |
| GTCCAAGCTATTACTTGGAT+TGG | + | chr8_1:62807134-62807153 | Msa1206050:intron | 40.0% | |
| GTCCAATCCAAGTAATAGCT+TGG | - | chr8_1:62807139-62807158 | None:intergenic | 40.0% | |
| TCCATTCACTCCACTGAAAT+GGG | - | chr8_1:62807430-62807449 | None:intergenic | 40.0% | |
| TAAAAATCAGTCTGGCAGCT+GGG | - | chr8_1:62807617-62807636 | None:intergenic | 40.0% | |
| ATAAAAATCAGTCTGGCAGC+TGG | - | chr8_1:62807618-62807637 | None:intergenic | 40.0% | |
| ACAAGTTTAGGTCGTTTCCT+TGG | - | chr8_1:62807836-62807855 | None:intergenic | 40.0% | |
| ! | GAAACGACCTAAACTTGTTC+CGG | + | chr8_1:62807838-62807857 | Msa1206050:CDS | 40.0% |
| ! | AAACGACCTAAACTTGTTCC+GGG | + | chr8_1:62807839-62807858 | Msa1206050:CDS | 40.0% |
| ATCCGTCTTCTAAACTGTTG+AGG | - | chr8_1:62807978-62807997 | None:intergenic | 40.0% | |
| AAAAGCTAAAGCCAAGACAG+AGG | + | chr8_1:62808094-62808113 | Msa1206050:CDS | 40.0% | |
| AATTCTTTCCTCCTCTGTCT+TGG | - | chr8_1:62808108-62808127 | None:intergenic | 40.0% | |
| GATCTTAACCTGCATTTCCT+TGG | - | chr8_1:62808177-62808196 | None:intergenic | 40.0% | |
| CTGCTACAGTAGCCATTGTT+TGG | - | chr8_1:62805853-62805872 | None:intergenic | 45.0% | |
| CAAGAAGGAAGTGACATAGG+AGG | - | chr8_1:62805938-62805957 | None:intergenic | 45.0% | |
| GGCGGAAAATCCATTCAAGA+AGG | - | chr8_1:62805953-62805972 | None:intergenic | 45.0% | |
| !! | CTTGGTGTCATTGTTGTTGG+TGG | - | chr8_1:62805974-62805993 | None:intergenic | 45.0% |
| ! | TTGGCAGGCACAAAAGCTTT+TGG | + | chr8_1:62806365-62806384 | Msa1206050:intron | 45.0% |
| ! | TTAGGATCCTCATCTAGGAC+AGG | - | chr8_1:62806435-62806454 | None:intergenic | 45.0% |
| CGACATTAGGATCCTCATCT+AGG | - | chr8_1:62806440-62806459 | None:intergenic | 45.0% | |
| ATGCCGCAATCATCGACATT+AGG | - | chr8_1:62806453-62806472 | None:intergenic | 45.0% | |
| !! | TGGACTTTGCTGGTTGGTAA+TGG | + | chr8_1:62806596-62806615 | Msa1206050:intron | 45.0% |
| TTTGCTTACAGCCCAATCAG+TGG | - | chr8_1:62806757-62806776 | None:intergenic | 45.0% | |
| CTTAACCACAGACAAAGAGC+AGG | - | chr8_1:62806842-62806861 | None:intergenic | 45.0% | |
| TCCCATTTCAGTGGAGTGAA+TGG | + | chr8_1:62807426-62807445 | Msa1206050:intron | 45.0% | |
| CTCCATTCACTCCACTGAAA+TGG | - | chr8_1:62807431-62807450 | None:intergenic | 45.0% | |
| CATTTCAGTGGAGTGAATGG+AGG | + | chr8_1:62807429-62807448 | Msa1206050:intron | 45.0% | |
| ! | AATGGAGGTTTTTCCGTCGT+TGG | + | chr8_1:62807444-62807463 | Msa1206050:intron | 45.0% |
| TTACGACTTAGCACCAACGA+CGG | - | chr8_1:62807460-62807479 | None:intergenic | 45.0% | |
| CGCAACATGTTGCCATGATA+TGG | + | chr8_1:62807584-62807603 | Msa1206050:intron | 45.0% | |
| AGTTTAGGTCGTTTCCTTGG+CGG | - | chr8_1:62807833-62807852 | None:intergenic | 45.0% | |
| TCTTCTCCCGGAACAAGTTT+AGG | - | chr8_1:62807848-62807867 | None:intergenic | 45.0% | |
| AGAAAGGTGGTTACCATCCA+TGG | + | chr8_1:62808151-62808170 | Msa1206050:CDS | 45.0% | |
| AATAGTGTCTTCGGAGATGC+AGG | + | chr8_1:62808204-62808223 | Msa1206050:exon | 45.0% | |
| !!! | AATATATTTTTAGATATTAA+TGG | + | chr8_1:62807527-62807546 | Msa1206050:intron | 5.0% |
| AATGGCTACTGTAGCAGCAG+TGG | + | chr8_1:62805856-62805875 | Msa1206050:CDS | 50.0% | |
| AGTGACATAGGAGGAGGTTC+CGG | - | chr8_1:62805929-62805948 | None:intergenic | 50.0% | |
| GAAGGAAGTGACATAGGAGG+AGG | - | chr8_1:62805935-62805954 | None:intergenic | 50.0% | |
| !! | GGTGTCATTGTTGTTGGTGG+CGG | - | chr8_1:62805971-62805990 | None:intergenic | 50.0% |
| GATGCATGGCATGCTGATCT+GGG | - | chr8_1:62806873-62806892 | None:intergenic | 50.0% | |
| AGATGCATGGCATGCTGATC+TGG | - | chr8_1:62806874-62806893 | None:intergenic | 50.0% | |
| CTGGGTTGCACACCATATCA+TGG | - | chr8_1:62807599-62807618 | None:intergenic | 50.0% | |
| AGCTAAAGCCAAGACAGAGG+AGG | + | chr8_1:62808097-62808116 | Msa1206050:CDS | 50.0% | |
| TGCATTTCCTTGGCCATGGA+TGG | - | chr8_1:62808167-62808186 | None:intergenic | 50.0% | |
| ATCCATGGCCAAGGAAATGC+AGG | + | chr8_1:62808166-62808185 | Msa1206050:CDS | 50.0% | |
| AACCTGCATTTCCTTGGCCA+TGG | - | chr8_1:62808171-62808190 | None:intergenic | 50.0% | |
| AGCAGCAGTGGCGATGAAGA+CGG | + | chr8_1:62805868-62805887 | Msa1206050:CDS | 55.0% | |
| ATGAAGACGGTGACGCAGCA+TGG | + | chr8_1:62805881-62805900 | Msa1206050:CDS | 55.0% | |
| !! | GCAGCCATTGATTCCGTTGC+CGG | + | chr8_1:62805907-62805926 | Msa1206050:CDS | 55.0% |
| GGTTCCGGCAACGGAATCAA+TGG | - | chr8_1:62805914-62805933 | None:intergenic | 55.0% | |
| ATAGGAGGAGGTTCCGGCAA+CGG | - | chr8_1:62805923-62805942 | None:intergenic | 55.0% | |
| CACACCCTGCTCTTTGTCTG+TGG | + | chr8_1:62806834-62806853 | Msa1206050:intron | 55.0% | |
| AGGTCGTTTCCTTGGCGGTT+GGG | - | chr8_1:62807828-62807847 | None:intergenic | 55.0% | |
| TAGGTCGTTTCCTTGGCGGT+TGG | - | chr8_1:62807829-62807848 | None:intergenic | 55.0% | |
| GTGGTTACCATCCATGGCCA+AGG | + | chr8_1:62808157-62808176 | Msa1206050:CDS | 55.0% | |
| CAGATGAACCCCAACCGCCA+AGG | + | chr8_1:62807816-62807835 | Msa1206050:intron | 60.0% | |
| GGTCGTTTCCTTGGCGGTTG+GGG | - | chr8_1:62807827-62807846 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 62805831 | 62808567 | 62805831 | ID=Msa1206050;Name=Msa1206050 |
| chr8_1 | mRNA | 62805831 | 62808567 | 62805831 | ID=Msa1206050-mRNA-1;Parent=Msa1206050;Name=Msa1206050-mRNA-1;_AED=0.06;_eAED=0.06;_QI=7|1|1|1|1|1|4|362|218 |
| chr8_1 | exon | 62805831 | 62806053 | 62805831 | ID=Msa1206050-mRNA-1:exon:20350;Parent=Msa1206050-mRNA-1 |
| chr8_1 | exon | 62806372 | 62806519 | 62806372 | ID=Msa1206050-mRNA-1:exon:20351;Parent=Msa1206050-mRNA-1 |
| chr8_1 | exon | 62807819 | 62807889 | 62807819 | ID=Msa1206050-mRNA-1:exon:20352;Parent=Msa1206050-mRNA-1 |
| chr8_1 | exon | 62807984 | 62808567 | 62807984 | ID=Msa1206050-mRNA-1:exon:20353;Parent=Msa1206050-mRNA-1 |
| chr8_1 | five_prime_UTR | 62805831 | 62805837 | 62805831 | ID=Msa1206050-mRNA-1:five_prime_utr;Parent=Msa1206050-mRNA-1 |
| chr8_1 | CDS | 62805838 | 62806053 | 62805838 | ID=Msa1206050-mRNA-1:cds;Parent=Msa1206050-mRNA-1 |
| chr8_1 | CDS | 62806372 | 62806519 | 62806372 | ID=Msa1206050-mRNA-1:cds;Parent=Msa1206050-mRNA-1 |
| chr8_1 | CDS | 62807819 | 62807889 | 62807819 | ID=Msa1206050-mRNA-1:cds;Parent=Msa1206050-mRNA-1 |
| chr8_1 | CDS | 62807984 | 62808205 | 62807984 | ID=Msa1206050-mRNA-1:cds;Parent=Msa1206050-mRNA-1 |
| chr8_1 | three_prime_UTR | 62808206 | 62808567 | 62808206 | ID=Msa1206050-mRNA-1:three_prime_utr;Parent=Msa1206050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
