AlfalfaGEDB | Msa1131820

M. sativa cultivar zhongmu-4 / Msa1131820

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0023610	Msa1131820	0.806353	8.573255e-50	-8.615850e-47
Msa0153200	Msa1131820	0.834347	3.159032e-56	-8.615850e-47
Msa0157800	Msa1131820	0.813558	2.408876e-51	-8.615850e-47
Msa0211680	Msa1131820	0.809828	1.560077e-50	-8.615850e-47
Msa0273570	Msa1131820	0.813179	2.917102e-51	-8.615850e-47
Msa0352000	Msa1131820	0.820303	7.367481e-53	-8.615850e-47
Msa0352010	Msa1131820	0.808935	2.424826e-50	-8.615850e-47
Msa0452410	Msa1131820	0.805975	1.029843e-49	-8.615850e-47
Msa0458700	Msa1131820	0.803387	3.571438e-49	-8.615850e-47
Msa0533290	Msa1131820	0.813458	2.533476e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Find 24 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGATGGCGTCAACTTGA+TGG	0.426118	7_3:+84465771	Msa1131820:CDS
AACTATGTTAATGCAAAGGA+AGG	0.523880	7_3:+84465730	Msa1131820:CDS
AATAAATGATGATGAAAGGA+AGG	0.561857	7_3:+84462742	Msa1131820:CDS
ACGAAATAAATGATGATGAA+AGG	0.525658	7_3:+84462738	Msa1131820:CDS
ACTATGTTAATGCAAAGGAA+GGG	0.676109	7_3:+84465731	Msa1131820:CDS
ACTTAATTACAAAATAACAT+TGG	0.535669	7_3:-84465926	None:intergenic
AGGCGTACTTACCTAAAGGA+TGG	0.652090	7_3:+84465757	Msa1131820:CDS
AGGTGAAAGATCTCAACATG+AGG	0.662987	7_3:+84462645	Msa1131820:CDS
ATCGTATGCATTGTAGTGGT+TGG	0.501248	7_3:+84465836	Msa1131820:three_prime_UTR
ATTTATCGTATGCATTGTAG+TGG	0.584319	7_3:+84465832	Msa1131820:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGTTGCTTCGTATATACTT+AGG	-	chr7_3:84462787-84462806	None:intergenic	30.0%
ATATACAAGGATCAAGTCTA+TGG	+	chr7_3:84462838-84462857	Msa1131820:intron	30.0%
GTAAAATATCCAAACAACTC+TGG	-	chr7_3:84463296-84463315	None:intergenic	30.0%
GTTACAAACCCAAAACTTAA+AGG	-	chr7_3:84463446-84463465	None:intergenic	30.0%
GGGAAAAAAAAAGAGATAGA+AGG	+	chr7_3:84463657-84463676	Msa1131820:intron	30.0%
TCTGTTAAAATAAACTGAGC+TGG	-	chr7_3:84464446-84464465	None:intergenic	30.0%
CAAAGACTAAATTACACTAG+AGG	-	chr7_3:84464589-84464608	None:intergenic	30.0%
TTGAATCAAGATTTGAGCAT+TGG	+	chr7_3:84464708-84464727	Msa1131820:intron	30.0%
TCAACAATCTATTATGTGTG+TGG	+	chr7_3:84464830-84464849	Msa1131820:intron	30.0%
ATTTGAGAGGGAACATAATT+AGG	-	chr7_3:84465040-84465059	None:intergenic	30.0%

Showing 1 to 10 of 183 entries

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	84462617	84465975	84462617	ID=Msa1131820;Name=Msa1131820
chr7_3	mRNA	84462617	84465975	84462617	ID=Msa1131820-mRNA-1;Parent=Msa1131820;Name=Msa1131820-mRNA-1;_AED=0.48;_eAED=0.48;_QI=0\|0\|0.5\|0.5\|1\|1\|2\|168\|88
chr7_3	exon	84462617	84462769	84462617	ID=Msa1131820-mRNA-1:exon:25142;Parent=Msa1131820-mRNA-1
chr7_3	exon	84465694	84465975	84465694	ID=Msa1131820-mRNA-1:exon:25143;Parent=Msa1131820-mRNA-1
chr7_3	CDS	84462617	84462769	84462617	ID=Msa1131820-mRNA-1:cds;Parent=Msa1131820-mRNA-1
chr7_3	CDS	84465694	84465807	84465694	ID=Msa1131820-mRNA-1:cds;Parent=Msa1131820-mRNA-1
chr7_3	three_prime_UTR	84465808	84465975	84465808	ID=Msa1131820-mRNA-1:three_prime_utr;Parent=Msa1131820-mRNA-1

Gene Sequence	>Msa1131820 ATGGCTTTTCGCAAAATGGAGATTAAGAAGGTGAAAGATCTCAACATGAGGCGTGTGACATCCTCTGAAAAGAAGTCTCACTCTTTTAAAGATATGATCCAAAAGCTTGTTAATATACTAGACGAAATAAATGATGATGAAAGGAAGGACGAGTCTCAAGCCTTTGCATCAATAGGAGAAGGAAGTGGCAACTATGTTAATGCAAAGGAAGGGTACAGGCGTACTTACCTAAAGGATGGCGTCAACTTGATGGTCTTAATTCCATAA
Protein sequence	>Msa1131820 MAFRKMEIKKVKDLNMRRVTSSEKKSHSFKDMIQKLVNILDEINDDERKDESQAFASIGEGSGNYVNAKEGYRRTYLKDGVNLMVLIP*