Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0023610 | Msa1131820 | 0.806353 | 8.573255e-50 | -8.615850e-47 |
| Msa0639460 | Msa1131820 | 0.802557 | 5.303041e-49 | -8.615850e-47 |
| Msa0675510 | Msa1131820 | 0.806167 | 9.383628e-50 | -8.615850e-47 |
| Msa0815320 | Msa1131820 | 0.859824 | 3.165754e-63 | -8.615850e-47 |
| Msa0818010 | Msa1131820 | 0.811913 | 5.518072e-51 | -8.615850e-47 |
| Msa0153200 | Msa1131820 | 0.834347 | 3.159032e-56 | -8.615850e-47 |
| Msa0157800 | Msa1131820 | 0.813558 | 2.408876e-51 | -8.615850e-47 |
| Msa0211680 | Msa1131820 | 0.809828 | 1.560077e-50 | -8.615850e-47 |
| Msa0452410 | Msa1131820 | 0.805975 | 1.029843e-49 | -8.615850e-47 |
| Msa0458700 | Msa1131820 | 0.803387 | 3.571438e-49 | -8.615850e-47 |
| Msa1006250 | Msa1131820 | 0.859795 | 3.229856e-63 | -8.615850e-47 |
| Msa0273570 | Msa1131820 | 0.813179 | 2.917102e-51 | -8.615850e-47 |
| Msa0352000 | Msa1131820 | 0.820303 | 7.367481e-53 | -8.615850e-47 |
| Msa0352010 | Msa1131820 | 0.808935 | 2.424826e-50 | -8.615850e-47 |
| Msa1131820 | Msa1182730 | 0.800789 | 1.222175e-48 | -8.615850e-47 |
| Msa1131820 | Msa1232060 | 0.815043 | 1.131626e-51 | -8.615850e-47 |
| Msa1131820 | Msa1288000 | 0.845861 | 3.118941e-59 | -8.615850e-47 |
| Msa1131820 | Msa1347360 | 0.801831 | 7.480020e-49 | -8.615850e-47 |
| Msa1131820 | Msa1359820 | 0.817180 | 3.768573e-52 | -8.615850e-47 |
| Msa1131820 | Msa1409770 | 0.800329 | 1.517041e-48 | -8.615850e-47 |
| Msa1131820 | Msa1423990 | 0.819681 | 1.022185e-52 | -8.615850e-47 |
| Msa1131820 | Msa1463140 | 0.818846 | 1.584142e-52 | -8.615850e-47 |
| Msa0533290 | Msa1131820 | 0.813458 | 2.533476e-51 | -8.615850e-47 |
| Msa0533430 | Msa1131820 | 0.819919 | 9.020279e-53 | -8.615850e-47 |
| Msa0584130 | Msa1131820 | 0.817251 | 3.633937e-52 | -8.615850e-47 |
| Msa0858360 | Msa1131820 | 0.837482 | 5.063390e-57 | -8.615850e-47 |
| Msa0884920 | Msa1131820 | 0.813313 | 2.726574e-51 | -8.615850e-47 |
| Msa0902020 | Msa1131820 | 0.831441 | 1.666166e-55 | -8.615850e-47 |
| Msa0912370 | Msa1131820 | 0.803412 | 3.529749e-49 | -8.615850e-47 |
| Msa0912500 | Msa1131820 | 0.813384 | 2.630087e-51 | -8.615850e-47 |
| Msa0963310 | Msa1131820 | 0.822766 | 1.987661e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 24 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGTATATTAACAAGCTTT+TGG | 0.291374 | 7_3:-84462715 | None:intergenic |
| TCAAGTTGACGCCATCCTTT+AGG | 0.327487 | 7_3:-84465768 | None:intergenic |
| CCCGACAAACATTGTTTAAG+TGG | 0.365696 | 7_3:-84465896 | None:intergenic |
| AAAGGATGGCGTCAACTTGA+TGG | 0.426118 | 7_3:+84465771 | Msa1131820:CDS |
| CCACTTAAACAATGTTTGTC+GGG | 0.439248 | 7_3:+84465896 | Msa1131820:three_prime_UTR |
| TCTCAAGCCTTTGCATCAAT+AGG | 0.462111 | 7_3:+84465694 | Msa1131820:CDS |
| TCCACTTAAACAATGTTTGT+CGG | 0.471232 | 7_3:+84465895 | Msa1131820:three_prime_UTR |
| TCCTTCTCCTATTGATGCAA+AGG | 0.474495 | 7_3:-84465701 | None:intergenic |
| TCGCAAAATGGAGATTAAGA+AGG | 0.483000 | 7_3:+84462625 | Msa1131820:CDS |
| ATCGTATGCATTGTAGTGGT+TGG | 0.501248 | 7_3:+84465836 | Msa1131820:three_prime_UTR |
| AACTATGTTAATGCAAAGGA+AGG | 0.523880 | 7_3:+84465730 | Msa1131820:CDS |
| ACGAAATAAATGATGATGAA+AGG | 0.525658 | 7_3:+84462738 | Msa1131820:CDS |
| ACTTAATTACAAAATAACAT+TGG | 0.535669 | 7_3:-84465926 | None:intergenic |
| AATAAATGATGATGAAAGGA+AGG | 0.561857 | 7_3:+84462742 | Msa1131820:CDS |
| GCCTTTGCATCAATAGGAGA+AGG | 0.576681 | 7_3:+84465700 | Msa1131820:CDS |
| TTAATGCAAAGGAAGGGTAC+AGG | 0.577714 | 7_3:+84465737 | Msa1131820:CDS |
| ATTTATCGTATGCATTGTAG+TGG | 0.584319 | 7_3:+84465832 | Msa1131820:three_prime_UTR |
| GTACAGGCGTACTTACCTAA+AGG | 0.587942 | 7_3:+84465753 | Msa1131820:CDS |
| TGATGATGAAAGGAAGGACG+AGG | 0.598639 | 7_3:+84462748 | Msa1131820:CDS |
| GCATCAATAGGAGAAGGAAG+TGG | 0.598674 | 7_3:+84465706 | Msa1131820:CDS |
| TGGCAACTATGTTAATGCAA+AGG | 0.600670 | 7_3:+84465726 | Msa1131820:CDS |
| AGGCGTACTTACCTAAAGGA+TGG | 0.652090 | 7_3:+84465757 | Msa1131820:CDS |
| AGGTGAAAGATCTCAACATG+AGG | 0.662987 | 7_3:+84462645 | Msa1131820:CDS |
| ACTATGTTAATGCAAAGGAA+GGG | 0.676109 | 7_3:+84465731 | Msa1131820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATTTTTATAATTAAAA+GGG | - | chr7_3:84464396-84464415 | None:intergenic | 0.0% |
| !!! | TATTTATTTTTATAATTAAA+AGG | - | chr7_3:84464397-84464416 | None:intergenic | 0.0% |
| !!! | ATTTTTATTTTATTTTATTA+TGG | - | chr7_3:84465805-84465824 | None:intergenic | 0.0% |
| !! | GAAAAAAAAAAATAACTAAA+AGG | - | chr7_3:84463477-84463496 | None:intergenic | 10.0% |
| !!! | TTAAAAAATTCTATTGTTTT+GGG | + | chr7_3:84464177-84464196 | Msa1131820:intron | 10.0% |
| !! | ATCAAAATCAATTAAATTGA+AGG | + | chr7_3:84463729-84463748 | Msa1131820:intron | 15.0% |
| !!! | TTGAAATTTGATCTAAAATT+TGG | + | chr7_3:84463799-84463818 | Msa1131820:intron | 15.0% |
| !!! | GAAAAGTTGATATATTTATA+GGG | - | chr7_3:84464089-84464108 | None:intergenic | 15.0% |
| !!! | ATGGTTAAAGATATTTTTTA+GGG | - | chr7_3:84464122-84464141 | None:intergenic | 15.0% |
| !!! | TATGGTTAAAGATATTTTTT+AGG | - | chr7_3:84464123-84464142 | None:intergenic | 15.0% |
| !!! | GTTAAAAAATTCTATTGTTT+TGG | + | chr7_3:84464176-84464195 | Msa1131820:intron | 15.0% |
| !!! | TAAAAAATTCTATTGTTTTG+GGG | + | chr7_3:84464178-84464197 | Msa1131820:intron | 15.0% |
| !! | AAATAAATAATTAACAGATG+TGG | + | chr7_3:84464408-84464427 | Msa1131820:intron | 15.0% |
| !!! | CATTTTTTAATATTTCTTGT+AGG | - | chr7_3:84464867-84464886 | None:intergenic | 15.0% |
| !! | CTACAAGAAATATTAAAAAA+TGG | + | chr7_3:84464865-84464884 | Msa1131820:intron | 15.0% |
| !!! | AATGTAATTTTTTTTCTTCA+TGG | + | chr7_3:84465413-84465432 | Msa1131820:intron | 15.0% |
| !! | ATTCTTGGTTATTATTATTA+TGG | + | chr7_3:84465492-84465511 | Msa1131820:intron | 15.0% |
| !! | ATTTGAAAAACAATAGATAA+GGG | - | chr7_3:84465623-84465642 | None:intergenic | 15.0% |
| !! | AATTTGAAAAACAATAGATA+AGG | - | chr7_3:84465624-84465643 | None:intergenic | 15.0% |
| !! | ACTTAATTACAAAATAACAT+TGG | - | chr7_3:84465929-84465948 | None:intergenic | 15.0% |
| !!! | GTGTTGTATATTTTTTATGT+TGG | + | chr7_3:84463402-84463421 | Msa1131820:intron | 20.0% |
| !! | GCAAACAATTTAATAGTTAA+AGG | - | chr7_3:84463510-84463529 | None:intergenic | 20.0% |
| !!! | TCAATGTGTATTTTAATTTG+TGG | - | chr7_3:84463608-84463627 | None:intergenic | 20.0% |
| !!! | AAGAGATTTTTTTTTTGACA+AGG | + | chr7_3:84463636-84463655 | Msa1131820:intron | 20.0% |
| !!! | AGAGATTTTTTTTTTGACAA+GGG | + | chr7_3:84463637-84463656 | Msa1131820:intron | 20.0% |
| !! | TTTAATATTAATTCTGAACC+TGG | - | chr7_3:84463684-84463703 | None:intergenic | 20.0% |
| !! | AAAATCAATTAAATTGAAGG+TGG | + | chr7_3:84463732-84463751 | Msa1131820:intron | 20.0% |
| !!! | TTTTAGATCAAATTTCAATC+AGG | - | chr7_3:84463797-84463816 | None:intergenic | 20.0% |
| !!! | TGATGAAGAAAGATTTTTTT+TGG | + | chr7_3:84464030-84464049 | Msa1131820:intron | 20.0% |
| !!! | GATGAAGAAAGATTTTTTTT+GGG | + | chr7_3:84464031-84464050 | Msa1131820:intron | 20.0% |
| !!! | TTTTTTGGGCTTTTTTAATT+AGG | + | chr7_3:84464045-84464064 | Msa1131820:intron | 20.0% |
| !!! | TTTTTGGGCTTTTTTAATTA+GGG | + | chr7_3:84464046-84464065 | Msa1131820:intron | 20.0% |
| !!! | CGAAAAGTTGATATATTTAT+AGG | - | chr7_3:84464090-84464109 | None:intergenic | 20.0% |
| !!! | TGGTTAAAGATATTTTTTAG+GGG | - | chr7_3:84464121-84464140 | None:intergenic | 20.0% |
| !! | AAGTTGAAGAAAAAATTTAG+AGG | + | chr7_3:84464321-84464340 | Msa1131820:intron | 20.0% |
| !! | AGTTGAAGAAAAAATTTAGA+GGG | + | chr7_3:84464322-84464341 | Msa1131820:intron | 20.0% |
| !! | GCAAAAGATTTAATAGTTAA+AGG | + | chr7_3:84464488-84464507 | Msa1131820:intron | 20.0% |
| !! | TAATAGTTAAAGGATGATTA+TGG | + | chr7_3:84464498-84464517 | Msa1131820:intron | 20.0% |
| !! | AATAGTTAAAGGATGATTAT+GGG | + | chr7_3:84464499-84464518 | Msa1131820:intron | 20.0% |
| !! | GTAACAAATTTGTAACAAAT+AGG | - | chr7_3:84464547-84464566 | None:intergenic | 20.0% |
| !! | TGTCATTAATATGATGATTT+GGG | - | chr7_3:84465004-84465023 | None:intergenic | 20.0% |
| !! | TTGTCATTAATATGATGATT+TGG | - | chr7_3:84465005-84465024 | None:intergenic | 20.0% |
| !! | ATTAATATGATGATTTGAGA+GGG | - | chr7_3:84465052-84465071 | None:intergenic | 20.0% |
| !!! | AAAAATAAATTTTGCATTCG+TGG | + | chr7_3:84465128-84465147 | Msa1131820:intron | 20.0% |
| !!! | TTTTTTTTCTTCATGGTTTA+TGG | + | chr7_3:84465420-84465439 | Msa1131820:intron | 20.0% |
| !!! | GTTTTATTGTTACTATTGAA+AGG | + | chr7_3:84465444-84465463 | Msa1131820:intron | 20.0% |
| !!! | GATTTATGATTTTTGATTCT+TGG | + | chr7_3:84465477-84465496 | Msa1131820:intron | 20.0% |
| !!! | GAATTATTTCTTCAAAGTAA+TGG | + | chr7_3:84465648-84465667 | Msa1131820:intron | 20.0% |
| !! | CTAGTATATTAACAAGCTTT+TGG | - | chr7_3:84462718-84462737 | None:intergenic | 25.0% |
| !! | ACGAAATAAATGATGATGAA+AGG | + | chr7_3:84462738-84462757 | Msa1131820:CDS | 25.0% |
| !! | AATAAATGATGATGAAAGGA+AGG | + | chr7_3:84462742-84462761 | Msa1131820:CDS | 25.0% |
| !! | TATGAAGTTTTCACTTCATT+AGG | - | chr7_3:84462821-84462840 | None:intergenic | 25.0% |
| ! | AAGTGAAAACTTCATATACA+AGG | + | chr7_3:84462825-84462844 | Msa1131820:intron | 25.0% |
| !! | TGATGTGTTAATGATTTTGT+GGG | + | chr7_3:84462998-84463017 | Msa1131820:intron | 25.0% |
| !!! | GATCTATCAATTTTAGTGTT+TGG | - | chr7_3:84463771-84463790 | None:intergenic | 25.0% |
| ! | AAATTTGGATCTTCATATGT+TGG | + | chr7_3:84463814-84463833 | Msa1131820:intron | 25.0% |
| !!! | GGTTAAAGATATTTTTTAGG+GGG | - | chr7_3:84464120-84464139 | None:intergenic | 25.0% |
| ! | TGCACATAAGTTTACTTTAA+AGG | + | chr7_3:84464259-84464278 | Msa1131820:intron | 25.0% |
| !! | CATAAGTTTACTTTAAAGGA+AGG | + | chr7_3:84464263-84464282 | Msa1131820:intron | 25.0% |
| ! | TTTAACAGAATGTAAAACGT+AGG | + | chr7_3:84464457-84464476 | Msa1131820:intron | 25.0% |
| ! | GTTACAAATCCAAAACTTAA+AGG | + | chr7_3:84464562-84464581 | Msa1131820:intron | 25.0% |
| ! | ATAATTGATAAACATGATGC+AGG | - | chr7_3:84464671-84464690 | None:intergenic | 25.0% |
| !! | GAATCTCAAATCTTATTTCA+AGG | - | chr7_3:84464812-84464831 | None:intergenic | 25.0% |
| !! | ATTAATATGATGATTTGGGA+GGG | - | chr7_3:84465000-84465019 | None:intergenic | 25.0% |
| ! | CATTAATATGATGATTTGAG+AGG | - | chr7_3:84465053-84465072 | None:intergenic | 25.0% |
| ! | TAGGAATTAGAGTTCAAAAA+TGG | - | chr7_3:84465313-84465332 | None:intergenic | 25.0% |
| ! | TCTAATAAAAGCAAAACTTG+TGG | - | chr7_3:84465357-84465376 | None:intergenic | 25.0% |
| !!! | TTACTATTGAAAGGTGTTTA+TGG | + | chr7_3:84465453-84465472 | Msa1131820:intron | 25.0% |
| !!! | AAATTTTTTATCCTCCTGAT+TGG | + | chr7_3:84465515-84465534 | Msa1131820:intron | 25.0% |
| ! | CATAATGTTAAAAACCAATC+AGG | - | chr7_3:84465532-84465551 | None:intergenic | 25.0% |
| !! | GGTTTTTAACATTATGTGAT+TGG | + | chr7_3:84465536-84465555 | Msa1131820:intron | 25.0% |
| TAGTTGCTTCGTATATACTT+AGG | - | chr7_3:84462787-84462806 | None:intergenic | 30.0% | |
| ATATACAAGGATCAAGTCTA+TGG | + | chr7_3:84462838-84462857 | Msa1131820:intron | 30.0% | |
| ! | GTGATGTGTTAATGATTTTG+TGG | + | chr7_3:84462997-84463016 | Msa1131820:intron | 30.0% |
| GTAAAATATCCAAACAACTC+TGG | - | chr7_3:84463296-84463315 | None:intergenic | 30.0% | |
| GTTACAAACCCAAAACTTAA+AGG | - | chr7_3:84463446-84463465 | None:intergenic | 30.0% | |
| !! | TTTTGGTGCAAATAAGGATT+TGG | - | chr7_3:84463569-84463588 | None:intergenic | 30.0% |
| GGGAAAAAAAAAGAGATAGA+AGG | + | chr7_3:84463657-84463676 | Msa1131820:intron | 30.0% | |
| ! | AAGTTTTCGATCTTCACTTT+TGG | - | chr7_3:84464290-84464309 | None:intergenic | 30.0% |
| ! | AAGTGAAGATCGAAAACTTT+TGG | + | chr7_3:84464291-84464310 | Msa1131820:intron | 30.0% |
| ! | AGTGAAGATCGAAAACTTTT+GGG | + | chr7_3:84464292-84464311 | Msa1131820:intron | 30.0% |
| TCTGTTAAAATAAACTGAGC+TGG | - | chr7_3:84464446-84464465 | None:intergenic | 30.0% | |
| CAAAGACTAAATTACACTAG+AGG | - | chr7_3:84464589-84464608 | None:intergenic | 30.0% | |
| TTGAATCAAGATTTGAGCAT+TGG | + | chr7_3:84464708-84464727 | Msa1131820:intron | 30.0% | |
| ! | AGGAACATTTTTCGTCTATA+AGG | - | chr7_3:84464792-84464811 | None:intergenic | 30.0% |
| TCAACAATCTATTATGTGTG+TGG | + | chr7_3:84464830-84464849 | Msa1131820:intron | 30.0% | |
| ! | CATTAATATGATGATTTGGG+AGG | - | chr7_3:84465001-84465020 | None:intergenic | 30.0% |
| ATTTGAGAGGGAACATAATT+AGG | - | chr7_3:84465040-84465059 | None:intergenic | 30.0% | |
| ATGATTCATAAGAAAGAGAG+AGG | - | chr7_3:84465242-84465261 | None:intergenic | 30.0% | |
| AGAAGAATGAATGACAGAAA+TGG | - | chr7_3:84465270-84465289 | None:intergenic | 30.0% | |
| TAGAGTTCAAAAATGGAAGA+AGG | - | chr7_3:84465306-84465325 | None:intergenic | 30.0% | |
| AATGTTAAAAACCAATCAGG+AGG | - | chr7_3:84465529-84465548 | None:intergenic | 30.0% | |
| AACTATGTTAATGCAAAGGA+AGG | + | chr7_3:84465730-84465749 | Msa1131820:CDS | 30.0% | |
| ACTATGTTAATGCAAAGGAA+GGG | + | chr7_3:84465731-84465750 | Msa1131820:CDS | 30.0% | |
| ATTTATCGTATGCATTGTAG+TGG | + | chr7_3:84465832-84465851 | Msa1131820:three_prime_UTR | 30.0% | |
| TCCACTTAAACAATGTTTGT+CGG | + | chr7_3:84465895-84465914 | Msa1131820:three_prime_UTR | 30.0% | |
| TCGCAAAATGGAGATTAAGA+AGG | + | chr7_3:84462625-84462644 | Msa1131820:CDS | 35.0% | |
| !! | TAGATCCAGTTTTGATCTGA+AGG | + | chr7_3:84463230-84463249 | Msa1131820:intron | 35.0% |
| GAAAACCTTCAGATCAAAAC+TGG | - | chr7_3:84463238-84463257 | None:intergenic | 35.0% | |
| AAAGGACCTCATGTGTAATT+TGG | - | chr7_3:84463428-84463447 | None:intergenic | 35.0% | |
| !! | ACATGAGGTCCTTTAAGTTT+TGG | + | chr7_3:84463434-84463453 | Msa1131820:intron | 35.0% |
| !! | CATGAGGTCCTTTAAGTTTT+GGG | + | chr7_3:84463435-84463454 | Msa1131820:intron | 35.0% |
| ! | GTGCAAATAAGGATTTGGTT+TGG | - | chr7_3:84463564-84463583 | None:intergenic | 35.0% |
| ! | AATTTGTGGCCGTTTGATTT+GGG | - | chr7_3:84463594-84463613 | None:intergenic | 35.0% |
| ! | TAATTTGTGGCCGTTTGATT+TGG | - | chr7_3:84463595-84463614 | None:intergenic | 35.0% |
| AAAAAAGAGATAGAAGGTCC+AGG | + | chr7_3:84463663-84463682 | Msa1131820:intron | 35.0% | |
| TGTGTGTGTTTGAACGAAAT+GGG | + | chr7_3:84463837-84463856 | Msa1131820:intron | 35.0% | |
| ! | GTGAAGATCGAAAACTTTTG+GGG | + | chr7_3:84464293-84464312 | Msa1131820:intron | 35.0% |
| TTAAAATAAACTGAGCTGGC+AGG | - | chr7_3:84464442-84464461 | None:intergenic | 35.0% | |
| !! | ACTAGAGGTCCTTTAAGTTT+TGG | - | chr7_3:84464574-84464593 | None:intergenic | 35.0% |
| ! | ATGATTTGGGAGGGAAATAT+GGG | - | chr7_3:84464991-84465010 | None:intergenic | 35.0% |
| ! | AACACCTAATTTTGTGCACA+CGG | + | chr7_3:84465085-84465104 | Msa1131820:intron | 35.0% |
| ATGAGATCTGAGTTGTAGAT+AGG | - | chr7_3:84465332-84465351 | None:intergenic | 35.0% | |
| ! | CTATATTTTGCTTGCTTGCT+TGG | + | chr7_3:84465579-84465598 | Msa1131820:intron | 35.0% |
| TGGCAACTATGTTAATGCAA+AGG | + | chr7_3:84465726-84465745 | Msa1131820:CDS | 35.0% | |
| CCACTTAAACAATGTTTGTC+GGG | + | chr7_3:84465896-84465915 | Msa1131820:three_prime_UTR | 35.0% | |
| AGGTGAAAGATCTCAACATG+AGG | + | chr7_3:84462645-84462664 | Msa1131820:CDS | 40.0% | |
| ! | AGAGTGAGACTTCTTTTCAG+AGG | - | chr7_3:84462681-84462700 | None:intergenic | 40.0% |
| TCACTTCATTAGGATCTGAG+TGG | - | chr7_3:84462811-84462830 | None:intergenic | 40.0% | |
| TACAAGGATCAAGTCTATGG+TGG | + | chr7_3:84462841-84462860 | Msa1131820:intron | 40.0% | |
| ACATCATCTATTCTCCCAGT+GGG | - | chr7_3:84462979-84462998 | None:intergenic | 40.0% | |
| TTTGTTTGCTCTCCTACTGA+TGG | + | chr7_3:84463125-84463144 | Msa1131820:intron | 40.0% | |
| ! | TGAAGGTTTTCTCTTACGTG+TGG | + | chr7_3:84463247-84463266 | Msa1131820:intron | 40.0% |
| TGCTTAGATCCAGAGTTGTT+TGG | + | chr7_3:84463284-84463303 | Msa1131820:intron | 40.0% | |
| ACGATTCAGCTCAATGCATT+TGG | + | chr7_3:84463314-84463333 | Msa1131820:intron | 40.0% | |
| !! | GTCGTTTGGTGTTTGTTAAC+CGG | + | chr7_3:84463343-84463362 | Msa1131820:intron | 40.0% |
| TGTTGGCCAAATTACACATG+AGG | + | chr7_3:84463419-84463438 | Msa1131820:intron | 40.0% | |
| ACCAAAACCCCCAAATCAAA+CGG | + | chr7_3:84463582-84463601 | Msa1131820:intron | 40.0% | |
| !! | ATTTGTGGCCGTTTGATTTG+GGG | - | chr7_3:84463593-84463612 | None:intergenic | 40.0% |
| GTGTGTGTGTTTGAACGAAA+TGG | + | chr7_3:84463836-84463855 | Msa1131820:intron | 40.0% | |
| ! | GATGATTTGGGAGGGAAATA+TGG | - | chr7_3:84464992-84465011 | None:intergenic | 40.0% |
| TCTCAAGCCTTTGCATCAAT+AGG | + | chr7_3:84465694-84465713 | Msa1131820:CDS | 40.0% | |
| TCCTTCTCCTATTGATGCAA+AGG | - | chr7_3:84465704-84465723 | None:intergenic | 40.0% | |
| ! | TTAATGCAAAGGAAGGGTAC+AGG | + | chr7_3:84465737-84465756 | Msa1131820:CDS | 40.0% |
| ATCGTATGCATTGTAGTGGT+TGG | + | chr7_3:84465836-84465855 | Msa1131820:three_prime_UTR | 40.0% | |
| CCCGACAAACATTGTTTAAG+TGG | - | chr7_3:84465899-84465918 | None:intergenic | 40.0% | |
| ! | TGATGATGAAAGGAAGGACG+AGG | + | chr7_3:84462748-84462767 | Msa1131820:CDS | 45.0% |
| ! | GCTACTTTCACATGAGCTAG+TGG | + | chr7_3:84462900-84462919 | Msa1131820:intron | 45.0% |
| ACTTTCACATGAGCTAGTGG+TGG | + | chr7_3:84462903-84462922 | Msa1131820:intron | 45.0% | |
| CTTTCACATGAGCTAGTGGT+GGG | + | chr7_3:84462904-84462923 | Msa1131820:intron | 45.0% | |
| TAAACCATGATTCCCCCACT+GGG | + | chr7_3:84462962-84462981 | Msa1131820:intron | 45.0% | |
| ATCATCTATTCTCCCAGTGG+GGG | - | chr7_3:84462977-84462996 | None:intergenic | 45.0% | |
| CATCATCTATTCTCCCAGTG+GGG | - | chr7_3:84462978-84462997 | None:intergenic | 45.0% | |
| CACATCATCTATTCTCCCAG+TGG | - | chr7_3:84462980-84462999 | None:intergenic | 45.0% | |
| GAGGAATGATGACCATCAGT+AGG | - | chr7_3:84463140-84463159 | None:intergenic | 45.0% | |
| ATCCCACTCCCTTGCAAAAT+CGG | - | chr7_3:84463202-84463221 | None:intergenic | 45.0% | |
| !! | GCATTTGGTGCTATGTCGTT+TGG | + | chr7_3:84463329-84463348 | Msa1131820:intron | 45.0% |
| !! | TGGGGGTTTTGGTGCAAATA+AGG | - | chr7_3:84463575-84463594 | None:intergenic | 45.0% |
| !! | TTTGTGGCCGTTTGATTTGG+GGG | - | chr7_3:84463592-84463611 | None:intergenic | 45.0% |
| GTGTGTTTGAACGAAATGGG+TGG | + | chr7_3:84463840-84463859 | Msa1131820:intron | 45.0% | |
| GGGAGGGAAATATGGGATTA+GGG | - | chr7_3:84464984-84465003 | None:intergenic | 45.0% | |
| TGGGAGGGAAATATGGGATT+AGG | - | chr7_3:84464985-84465004 | None:intergenic | 45.0% | |
| TGAGCCGTGTGCACAAAATT+AGG | - | chr7_3:84465092-84465111 | None:intergenic | 45.0% | |
| GAGAGAGGCTAGTGAATGAT+CGG | - | chr7_3:84465227-84465246 | None:intergenic | 45.0% | |
| ATGGAAGAAGGCGACTCAAA+CGG | - | chr7_3:84465294-84465313 | None:intergenic | 45.0% | |
| GCCTTTGCATCAATAGGAGA+AGG | + | chr7_3:84465700-84465719 | Msa1131820:CDS | 45.0% | |
| GCATCAATAGGAGAAGGAAG+TGG | + | chr7_3:84465706-84465725 | Msa1131820:CDS | 45.0% | |
| GTACAGGCGTACTTACCTAA+AGG | + | chr7_3:84465753-84465772 | Msa1131820:CDS | 45.0% | |
| AGGCGTACTTACCTAAAGGA+TGG | + | chr7_3:84465757-84465776 | Msa1131820:CDS | 45.0% | |
| !! | TCAAGTTGACGCCATCCTTT+AGG | - | chr7_3:84465771-84465790 | None:intergenic | 45.0% |
| AAAGGATGGCGTCAACTTGA+TGG | + | chr7_3:84465771-84465790 | Msa1131820:CDS | 45.0% | |
| !!! | ATGAATTTTTATATTTTTTA+TGG | - | chr7_3:84464141-84464160 | None:intergenic | 5.0% |
| !!! | AACTATAATTATATTTTTTT+AGG | - | chr7_3:84464648-84464667 | None:intergenic | 5.0% |
| !! | TAAAATAAAATAAAAATTGA+TGG | + | chr7_3:84465808-84465827 | Msa1131820:three_prime_UTR | 5.0% |
| CAGTGGGGGAATCATGGTTT+AGG | - | chr7_3:84462963-84462982 | None:intergenic | 50.0% | |
| CTAAACCATGATTCCCCCAC+TGG | + | chr7_3:84462961-84462980 | Msa1131820:intron | 50.0% | |
| CGACAGAGGGTTATATGCAG+AGG | - | chr7_3:84463159-84463178 | None:intergenic | 50.0% | |
| GAAACGACAACGACGACAGA+GGG | - | chr7_3:84463172-84463191 | None:intergenic | 50.0% | |
| AGAAACGACAACGACGACAG+AGG | - | chr7_3:84463173-84463192 | None:intergenic | 50.0% | |
| ! | TCTGAGCCTCCGATTTTGCA+AGG | + | chr7_3:84463190-84463209 | Msa1131820:intron | 50.0% |
| ! | CTGAGCCTCCGATTTTGCAA+GGG | + | chr7_3:84463191-84463210 | Msa1131820:intron | 50.0% |
| ! | CTCCGATTTTGCAAGGGAGT+GGG | + | chr7_3:84463197-84463216 | Msa1131820:intron | 50.0% |
| !!! | GCCGTTTGATTTGGGGGTTT+TGG | - | chr7_3:84463586-84463605 | None:intergenic | 50.0% |
| ! | ATGGGTGGTCGTTGACGTTT+TGG | + | chr7_3:84463855-84463874 | Msa1131820:intron | 50.0% |
| ! | TGGGTGGTCGTTGACGTTTT+GGG | + | chr7_3:84463856-84463875 | Msa1131820:intron | 50.0% |
| !!! | TGGTCGTTGACGTTTTGGGA+TGG | + | chr7_3:84463860-84463879 | Msa1131820:intron | 50.0% |
| !!! | TCGTTGACGTTTTGGGATGG+TGG | + | chr7_3:84463863-84463882 | Msa1131820:intron | 50.0% |
| !!! | TTGACGTTTTGGGATGGTGG+TGG | + | chr7_3:84463866-84463885 | Msa1131820:intron | 50.0% |
| TTCTCCCAGTGGGGGAATCA+TGG | - | chr7_3:84462969-84462988 | None:intergenic | 55.0% | |
| CCACTCCCTTGCAAAATCGG+AGG | - | chr7_3:84463199-84463218 | None:intergenic | 55.0% | |
| ! | CCTCCGATTTTGCAAGGGAG+TGG | + | chr7_3:84463196-84463215 | Msa1131820:intron | 55.0% |
| AAACTGAGCTGGCAGGTGAC+AGG | - | chr7_3:84464435-84464454 | None:intergenic | 55.0% | |
| GCGCATCAGTGACGAAGCTC+CGG | - | chr7_3:84463365-84463384 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 84462617 | 84465975 | 84462617 | ID=Msa1131820;Name=Msa1131820 |
| chr7_3 | mRNA | 84462617 | 84465975 | 84462617 | ID=Msa1131820-mRNA-1;Parent=Msa1131820;Name=Msa1131820-mRNA-1;_AED=0.48;_eAED=0.48;_QI=0|0|0.5|0.5|1|1|2|168|88 |
| chr7_3 | exon | 84462617 | 84462769 | 84462617 | ID=Msa1131820-mRNA-1:exon:25142;Parent=Msa1131820-mRNA-1 |
| chr7_3 | exon | 84465694 | 84465975 | 84465694 | ID=Msa1131820-mRNA-1:exon:25143;Parent=Msa1131820-mRNA-1 |
| chr7_3 | CDS | 84462617 | 84462769 | 84462617 | ID=Msa1131820-mRNA-1:cds;Parent=Msa1131820-mRNA-1 |
| chr7_3 | CDS | 84465694 | 84465807 | 84465694 | ID=Msa1131820-mRNA-1:cds;Parent=Msa1131820-mRNA-1 |
| chr7_3 | three_prime_UTR | 84465808 | 84465975 | 84465808 | ID=Msa1131820-mRNA-1:three_prime_utr;Parent=Msa1131820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
