Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1417180 | sp|Q5R6J3|S35F5_PONAB | 29.484 | 407 | 252 | 8 | 13 | 393 | 68 | 465 | 5.52e-39 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1417180 | G7L198 | 96.560 | 436 | 15 | 0 | 1 | 436 | 1 | 436 | 0.0 | 848 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015140 | Msa1417180 | 0.818170 | 2.254440e-52 | -8.615850e-47 |
| Msa0108870 | Msa1417180 | 0.821821 | 3.293257e-53 | -8.615850e-47 |
| Msa1363700 | Msa1417180 | 0.805663 | 1.197243e-49 | -8.615850e-47 |
| Msa1417180 | Msa1449050 | 0.969131 | 1.129595e-129 | -8.615850e-47 |
| Msa0619920 | Msa1417180 | 0.842106 | 3.166837e-58 | -8.615850e-47 |
| Msa0154920 | Msa1417180 | 0.801608 | 8.310431e-49 | -8.615850e-47 |
| Msa1258370 | Msa1417180 | 0.800161 | 1.641231e-48 | -8.615850e-47 |
| Msa1280620 | Msa1417180 | 0.800717 | 1.264206e-48 | -8.615850e-47 |
| Msa1317270 | Msa1417180 | 0.808418 | 3.128394e-50 | -8.615850e-47 |
| Msa0320610 | Msa1417180 | 0.800897 | 1.161449e-48 | -8.615850e-47 |
| Msa1148650 | Msa1417180 | 0.964898 | 6.556035e-124 | -8.615850e-47 |
| Msa0527910 | Msa1417180 | 0.812215 | 4.742569e-51 | -8.615850e-47 |
| Msa0537770 | Msa1417180 | 0.804193 | 2.429725e-49 | -8.615850e-47 |
| Msa0901320 | Msa1417180 | 0.808954 | 2.402363e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1417180 | MtrunA17_Chr7g0237321 | 96.560 | 436 | 15 | 0 | 1 | 436 | 1 | 436 | 0.0 | 848 |
| Msa1417180 | MtrunA17_Chr1g0149511 | 29.471 | 397 | 239 | 13 | 13 | 398 | 5 | 371 | 2.73e-34 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1417180 | AT3G07080.1 | 68.646 | 421 | 112 | 4 | 7 | 415 | 1 | 413 | 0.0 | 517 |
| Msa1417180 | AT4G32140.1 | 29.756 | 410 | 250 | 15 | 12 | 405 | 3 | 390 | 2.59e-34 | 132 |
Find 121 sgRNAs with CRISPR-Local
Find 313 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTCAGTTTCTTGGATTTC+TGG | -0.002991 | tig0024450:+68950 | Msa1417180:CDS |
| TTGATTCCAATTGTTGAAAT+TGG | 0.131160 | tig0024450:+67662 | Msa1417180:CDS |
| TAGAAATTGAATCCAAATTA+TGG | 0.133988 | tig0024450:-67191 | None:intergenic |
| CATTTAATTTCTTGCGAATA+AGG | 0.142549 | tig0024450:-68896 | None:intergenic |
| AAGAGTGATAAGAGTTTAAA+AGG | 0.154666 | tig0024450:+67725 | Msa1417180:CDS |
| GAATCATCCAACCCATAATT+TGG | 0.172630 | tig0024450:+67179 | Msa1417180:five_prime_UTR |
| CCTTGGTGAAATTGAGTATT+AGG | 0.200211 | tig0024450:-69007 | None:intergenic |
| TGTTGAAATTGGGAGGTATT+TGG | 0.227476 | tig0024450:+67673 | Msa1417180:CDS |
| GCAGCTGAATCTTGTGTTCT+TGG | 0.228024 | tig0024450:-71722 | None:intergenic |
| GTTGCCTCAAATCCTCTTCT+TGG | 0.248584 | tig0024450:+68825 | Msa1417180:CDS |
| AAGCAGCTTGGTCTGATTAT+TGG | 0.259880 | tig0024450:+69056 | Msa1417180:CDS |
| TAATAGCTGTTGCAATAATA+TGG | 0.277942 | tig0024450:+67549 | Msa1417180:CDS |
| GCTACAAAAGAGTCGTAAAT+TGG | 0.278178 | tig0024450:-67339 | None:intergenic |
| TGGACATTCTCCTCCCTTCA+TGG | 0.295170 | tig0024450:+71559 | Msa1417180:CDS |
| GCTAGTATGGCTCAGTTTCT+TGG | 0.297598 | tig0024450:+68942 | Msa1417180:CDS |
| GCTCAGTTTCTTGGATTTCT+GGG | 0.301569 | tig0024450:+68951 | Msa1417180:CDS |
| GTTTATTGATATGCCCGTTT+TGG | 0.303197 | tig0024450:+67990 | Msa1417180:CDS |
| TGGGTTGGATGATTCAATTA+TGG | 0.321612 | tig0024450:-67171 | None:intergenic |
| AAGAGTTTAAAAGGGAGGTT+AGG | 0.322283 | tig0024450:+67734 | Msa1417180:CDS |
| TATGGTGGGTTCAAAAGATT+TGG | 0.328397 | tig0024450:+67487 | Msa1417180:exon |
| AAAGCATGGAAATGGGGTTT+AGG | 0.333836 | tig0024450:+67515 | Msa1417180:CDS |
| AGTCTTGGTGATTCACAATC+TGG | 0.338502 | tig0024450:+68792 | Msa1417180:CDS |
| TACCTCCCAATTTCAACAAT+TGG | 0.341869 | tig0024450:-67668 | None:intergenic |
| GCTGTCATGATCGGCTTTGC+TGG | 0.343637 | tig0024450:+71599 | Msa1417180:CDS |
| ATTGGTTGGTCGGGTTGGTT+TGG | 0.346117 | tig0024450:+67898 | Msa1417180:CDS |
| ATGTGCTGAGTGATTACTTA+TGG | 0.347004 | tig0024450:+71447 | Msa1417180:CDS |
| AGGTATTTGGAGGATTCTTA+TGG | 0.349869 | tig0024450:+67686 | Msa1417180:CDS |
| AGAAATTGAATCCAAATTAT+GGG | 0.350708 | tig0024450:-67190 | None:intergenic |
| CCTATCAAAACCAGGATTGC+TGG | 0.353043 | tig0024450:+71421 | Msa1417180:intron |
| CTTATGGTGATTTATTGTTT+TGG | 0.353615 | tig0024450:+67702 | Msa1417180:CDS |
| TGGATAGTAAAGCATGGAAA+TGG | 0.360167 | tig0024450:+67507 | Msa1417180:CDS |
| ATTTAATTTCTTGCGAATAA+GGG | 0.360980 | tig0024450:-68895 | None:intergenic |
| TTCCAAGTAAGCATATAAAA+AGG | 0.364591 | tig0024450:-69035 | None:intergenic |
| TGATTCCAATTGTTGAAATT+GGG | 0.366697 | tig0024450:+67663 | Msa1417180:CDS |
| GGGTTGGATGATTCAATTAT+GGG | 0.370525 | tig0024450:-67170 | None:intergenic |
| GGATAGTAAAGCATGGAAAT+GGG | 0.381171 | tig0024450:+67508 | Msa1417180:CDS |
| CATATGCAATTCATTATTTG+TGG | 0.382385 | tig0024450:+67637 | Msa1417180:CDS |
| AAAGAATGGTGAAGCTAGTA+TGG | 0.384418 | tig0024450:+68929 | Msa1417180:CDS |
| CTTGGTGAAATTGAGTATTA+GGG | 0.387036 | tig0024450:-69006 | None:intergenic |
| GGAGGATTGGTTGGTCGGGT+TGG | 0.398920 | tig0024450:+67893 | Msa1417180:CDS |
| AGGTGGATGGGATTATTGAT+AGG | 0.423853 | tig0024450:+67831 | Msa1417180:CDS |
| CGTGACTGTAGTATACTTCA+AGG | 0.427227 | tig0024450:-68041 | None:intergenic |
| AGAGTTTAAAAGGGAGGTTA+GGG | 0.430574 | tig0024450:+67735 | Msa1417180:CDS |
| AAATTGAGTATTAGGGCAAC+TGG | 0.432650 | tig0024450:-68999 | None:intergenic |
| TAGTTGGAGGATTGGTTGGT+CGG | 0.434753 | tig0024450:+67888 | Msa1417180:CDS |
| CTTTAGTGTTCTTCTCTGCA+TGG | 0.443808 | tig0024450:+68752 | Msa1417180:CDS |
| TTTAGTGTTCTTCTCTGCAT+GGG | 0.445703 | tig0024450:+68753 | Msa1417180:CDS |
| TTGGTTGATATATATAGATA+TGG | 0.447856 | tig0024450:+67469 | Msa1417180:exon |
| CTTTGCTGGAATCAATATTC+CGG | 0.452225 | tig0024450:+71613 | Msa1417180:CDS |
| GGGATTATTGATAGGAATGA+TGG | 0.456021 | tig0024450:+67839 | Msa1417180:CDS |
| GAGGTTAGGGGAGTCAGAGC+AGG | 0.456521 | tig0024450:+67748 | Msa1417180:CDS |
| TGGTTCTGAATTGCTGCCTT+CGG | 0.458823 | tig0024450:+67859 | Msa1417180:CDS |
| AGAGTGATAAGAGTTTAAAA+GGG | 0.465346 | tig0024450:+67726 | Msa1417180:CDS |
| CAAAGAGGGTTGGATGAGAA+AGG | 0.478907 | tig0024450:+67935 | Msa1417180:CDS |
| CCTTCGGATGATGTAGTTGG+AGG | 0.489732 | tig0024450:+67875 | Msa1417180:CDS |
| CTCAGTTTCTTGGATTTCTG+GGG | 0.495232 | tig0024450:+68952 | Msa1417180:CDS |
| CTGCCTTCGGATGATGTAGT+TGG | 0.499551 | tig0024450:+67872 | Msa1417180:CDS |
| GCCATTGTCGATACCATCAC+TGG | 0.501679 | tig0024450:+71539 | Msa1417180:CDS |
| GTGATAAGAGTTTAAAAGGG+AGG | 0.501849 | tig0024450:+67729 | Msa1417180:CDS |
| ACCTGTCGGATAATCAAAAT+CGG | 0.502142 | tig0024450:-67263 | None:intergenic |
| GTCTCCAAGAAGAGGATTTG+AGG | 0.508065 | tig0024450:-68829 | None:intergenic |
| TTGGTTATTGATGAGGTGGA+TGG | 0.510641 | tig0024450:+67818 | Msa1417180:CDS |
| GTTGATATATATAGATATGG+TGG | 0.511000 | tig0024450:+67472 | Msa1417180:exon |
| TTGAAAATGTTGATCAAAGA+GGG | 0.511678 | tig0024450:+67921 | Msa1417180:CDS |
| AGTTGGAGGATTGGTTGGTC+GGG | 0.512706 | tig0024450:+67889 | Msa1417180:CDS |
| GGAACAATAATTGTAAGTCT+TGG | 0.513896 | tig0024450:+68777 | Msa1417180:CDS |
| CATATGTAAGTAACAAGAAA+CGG | 0.514779 | tig0024450:-67620 | None:intergenic |
| TGGATGATTCAATTATGGGT+TGG | 0.516151 | tig0024450:-67166 | None:intergenic |
| AAAATACAATGTACAGGCTA+TGG | 0.518562 | tig0024450:-71749 | None:intergenic |
| ATTGAATCCAAATTATGGGT+TGG | 0.518853 | tig0024450:-67186 | None:intergenic |
| AACAAGAAACGGCGAGACAC+CGG | 0.521941 | tig0024450:-67609 | None:intergenic |
| GATGTAGTTGGAGGATTGGT+TGG | 0.522578 | tig0024450:+67884 | Msa1417180:CDS |
| TGTGCTGAGTGATTACTTAT+GGG | 0.526669 | tig0024450:+71448 | Msa1417180:CDS |
| TGAAATTGGGAGGTATTTGG+AGG | 0.527355 | tig0024450:+67676 | Msa1417180:CDS |
| AAGAAATTAAATGACGATGA+TGG | 0.528803 | tig0024450:+68906 | Msa1417180:CDS |
| GTTGAAAATGTTGATCAAAG+AGG | 0.534234 | tig0024450:+67920 | Msa1417180:CDS |
| TATCGACAATGGCAGCCAAT+GGG | 0.535322 | tig0024450:-71529 | None:intergenic |
| GGATGATGTAGTTGGAGGAT+TGG | 0.538766 | tig0024450:+67880 | Msa1417180:CDS |
| AAATGTTGATCAAAGAGGGT+TGG | 0.544769 | tig0024450:+67925 | Msa1417180:CDS |
| TGGTTATTGATGAGGTGGAT+GGG | 0.545204 | tig0024450:+67819 | Msa1417180:CDS |
| ATGCTTACTTGGAAGCAGCT+TGG | 0.546413 | tig0024450:+69044 | Msa1417180:CDS |
| TCAACCACAGTAGCTACAGC+TGG | 0.546656 | tig0024450:+71491 | Msa1417180:CDS |
| TTGATATATATAGATATGGT+GGG | 0.553205 | tig0024450:+67473 | Msa1417180:exon |
| TGAGGCGAGCGGTGAAGCTG+TGG | 0.553892 | tig0024450:+67790 | Msa1417180:CDS |
| CTTGGTCTGATTATTGGCAA+AGG | 0.556086 | tig0024450:+69062 | Msa1417180:CDS |
| TGATGTTAGAAGAACAGCCT+TGG | 0.557047 | tig0024450:-71471 | None:intergenic |
| AATGACGATGATGGAAAGAA+TGG | 0.558044 | tig0024450:+68915 | Msa1417180:CDS |
| CGGTGAAGCTGTGGAGTCGT+TGG | 0.559011 | tig0024450:+67799 | Msa1417180:CDS |
| GATAGTAAAGCATGGAAATG+GGG | 0.564186 | tig0024450:+67509 | Msa1417180:CDS |
| ACTCACAATTCAAGTCCCAT+TGG | 0.565061 | tig0024450:+71514 | Msa1417180:CDS |
| TGCTCCGAGGTAATCCATGA+AGG | 0.566177 | tig0024450:-71573 | None:intergenic |
| TTCCAATTGTTGAAATTGGG+AGG | 0.572344 | tig0024450:+67666 | Msa1417180:CDS |
| AAAGAGGGTTGGATGAGAAA+GGG | 0.575130 | tig0024450:+67936 | Msa1417180:CDS |
| GTCGTTGGTTATTGATGAGG+TGG | 0.576267 | tig0024450:+67814 | Msa1417180:CDS |
| GTATCGACAATGGCAGCCAA+TGG | 0.576644 | tig0024450:-71530 | None:intergenic |
| CCTCCCTTCATGGATTACCT+CGG | 0.584550 | tig0024450:+71569 | Msa1417180:CDS |
| AGTGTTCTTCTCTGCATGGG+AGG | 0.584870 | tig0024450:+68756 | Msa1417180:CDS |
| ATCAACAGAAACTACTGCTG+TGG | 0.586651 | tig0024450:+71652 | Msa1417180:CDS |
| GATACTTCTTAGAGATAATG+AGG | 0.587046 | tig0024450:+67772 | Msa1417180:CDS |
| AAAAGCTAGTGAAACCAAGA+AGG | 0.587390 | tig0024450:-68700 | None:intergenic |
| GGTTGGATGAGAAAGGGCGT+TGG | 0.588582 | tig0024450:+67942 | Msa1417180:CDS |
| AAGATTTGGATAGTAAAGCA+TGG | 0.592190 | tig0024450:+67501 | Msa1417180:CDS |
| GGAGCAATAGCTGTCATGAT+CGG | 0.595414 | tig0024450:+71590 | Msa1417180:CDS |
| GATTTGCTAAAAGTTTCGAC+CGG | 0.599285 | tig0024450:-71632 | None:intergenic |
| GAGTTTAAAAGGGAGGTTAG+GGG | 0.604921 | tig0024450:+67736 | Msa1417180:CDS |
| GGGAGGAGAATGTCCAGTGA+TGG | 0.613474 | tig0024450:-71552 | None:intergenic |
| TCCAGTGATGGTATCGACAA+TGG | 0.618439 | tig0024450:-71540 | None:intergenic |
| GTGCAATCTGTTGTAGATGC+CGG | 0.622214 | tig0024450:+67590 | Msa1417180:CDS |
| CAGTGAAGAATAAGAACTAG+AGG | 0.622553 | tig0024450:+71876 | Msa1417180:three_prime_UTR |
| GAGTGATTACTTATGGGCCA+AGG | 0.635867 | tig0024450:+71454 | Msa1417180:CDS |
| GCTCCGAGGTAATCCATGAA+GGG | 0.637265 | tig0024450:-71572 | None:intergenic |
| GCGAATAAGGGTGATATACA+CGG | 0.641125 | tig0024450:-68883 | None:intergenic |
| TGTCGGATAATCAAAATCGG+TGG | 0.643264 | tig0024450:-67260 | None:intergenic |
| GGAGTCGTTGGTTATTGATG+AGG | 0.652711 | tig0024450:+67811 | Msa1417180:CDS |
| GAGTCCAGCTGTAGCTACTG+TGG | 0.652955 | tig0024450:-71495 | None:intergenic |
| CCTCCAACTACATCATCCGA+AGG | 0.666233 | tig0024450:-67875 | None:intergenic |
| CTTGAAGTATACTACAGTCA+CGG | 0.678447 | tig0024450:+68042 | Msa1417180:CDS |
| CCTAATACTCAATTTCACCA+AGG | 0.684236 | tig0024450:+69007 | Msa1417180:CDS |
| CTTAGAGATAATGAGGCGAG+CGG | 0.687600 | tig0024450:+67779 | Msa1417180:CDS |
| ACACAGTACGATGTACCTGT+CGG | 0.694325 | tig0024450:-67277 | None:intergenic |
| TCATGACAGCTATTGCTCCG+AGG | 0.724191 | tig0024450:-71586 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTTTATTATAACAGA+AGG | - | tig0024450:70095-70114 | None:intergenic | 10.0% |
| !! | TATACATATATAAATAACCA+AGG | - | tig0024450:69684-69703 | None:intergenic | 15.0% |
| !!! | AAATTATGGTATCATTTTTA+GGG | - | tig0024450:69944-69963 | None:intergenic | 15.0% |
| !!! | AAAATTATGGTATCATTTTT+AGG | - | tig0024450:69945-69964 | None:intergenic | 15.0% |
| !!! | TTCATAGAAATCTAAAATTA+TGG | - | tig0024450:69958-69977 | None:intergenic | 15.0% |
| !!! | AATTTTAGATTTCTATGAAT+AGG | + | tig0024450:69959-69978 | Msa1417180:intron | 15.0% |
| !! | AGTCAAAAAAAAAAATGAAT+AGG | + | tig0024450:69991-70010 | Msa1417180:intron | 15.0% |
| !!! | AATAAATTCTAAAATAAGGT+GGG | - | tig0024450:70448-70467 | None:intergenic | 15.0% |
| !!! | AAATAAATTCTAAAATAAGG+TGG | - | tig0024450:70449-70468 | None:intergenic | 15.0% |
| !!! | CTCAAATAAATTCTAAAATA+AGG | - | tig0024450:70452-70471 | None:intergenic | 15.0% |
| !!! | TCTCAAATAAATTCTTTTTT+TGG | - | tig0024450:70553-70572 | None:intergenic | 15.0% |
| !! | AAAAGAATTTATTTGAGAAA+AGG | + | tig0024450:70555-70574 | Msa1417180:intron | 15.0% |
| !! | AAAGAATTTATTTGAGAAAA+GGG | + | tig0024450:70556-70575 | Msa1417180:intron | 15.0% |
| !! | TTTAAAAATAACTCAATACT+GGG | - | tig0024450:70637-70656 | None:intergenic | 15.0% |
| !! | ATTTAAAAATAACTCAATAC+TGG | - | tig0024450:70638-70657 | None:intergenic | 15.0% |
| !! | AGAAATTGAATCCAAATTAT+GGG | - | tig0024450:67193-67212 | None:intergenic | 20.0% |
| !! | TAGAAATTGAATCCAAATTA+TGG | - | tig0024450:67194-67213 | None:intergenic | 20.0% |
| !!! | TATTTTCTAGAATTGCAAAA+TGG | + | tig0024450:67373-67392 | Msa1417180:five_prime_UTR | 20.0% |
| !!! | ATTTTCTAGAATTGCAAAAT+GGG | + | tig0024450:67374-67393 | Msa1417180:five_prime_UTR | 20.0% |
| !!! | TTGGTTGATATATATAGATA+TGG | + | tig0024450:67469-67488 | Msa1417180:exon | 20.0% |
| !! | TTGATATATATAGATATGGT+GGG | + | tig0024450:67473-67492 | Msa1417180:exon | 20.0% |
| !! | AGTAGTTAATGAATATAACA+AGG | + | tig0024450:68230-68249 | Msa1417180:intron | 20.0% |
| !! | TCTAGGTATTCAAATAAATA+TGG | + | tig0024450:68320-68339 | Msa1417180:intron | 20.0% |
| !! | ATGTATATATGAACCTAATT+TGG | - | tig0024450:68369-68388 | None:intergenic | 20.0% |
| !! | TGAAAAAGTAACTAATTTAG+AGG | - | tig0024450:68631-68650 | None:intergenic | 20.0% |
| !!! | ATTTAATTTCTTGCGAATAA+GGG | - | tig0024450:68898-68917 | None:intergenic | 20.0% |
| !! | TAAATGATAGTCATGATTAT+AGG | + | tig0024450:69193-69212 | Msa1417180:intron | 20.0% |
| !! | TGCAAAATACAATATGTAAA+GGG | - | tig0024450:69392-69411 | None:intergenic | 20.0% |
| !! | TTGCAAAATACAATATGTAA+AGG | - | tig0024450:69393-69412 | None:intergenic | 20.0% |
| !! | TATAACTTACAACTATTGAT+TGG | - | tig0024450:69601-69620 | None:intergenic | 20.0% |
| !!! | ATATTTCTTCATATTTTGCT+TGG | + | tig0024450:69901-69920 | Msa1417180:intron | 20.0% |
| !! | TCAAAAGAATTTGTGATTTA+TGG | - | tig0024450:70034-70053 | None:intergenic | 20.0% |
| !!! | CAAATAAATTCTTTTTTTGG+TGG | - | tig0024450:70550-70569 | None:intergenic | 20.0% |
| !! | AAGAATTTATTTGAGAAAAG+GGG | + | tig0024450:70557-70576 | Msa1417180:intron | 20.0% |
| !! | GATAATTCTTATGAGTTTAA+TGG | - | tig0024450:70723-70742 | None:intergenic | 20.0% |
| !! | ATCTTAAAAGGAAAAAAGTT+GGG | - | tig0024450:71094-71113 | None:intergenic | 20.0% |
| !! | CTGTTCAAATATTTGAAAAT+TGG | + | tig0024450:71265-71284 | Msa1417180:intron | 20.0% |
| !!! | ATTTTGTAATTAAAGGTGAA+AGG | + | tig0024450:71312-71331 | Msa1417180:intron | 20.0% |
| !! | TTTAGTTGTTGCAAAAAATT+TGG | - | tig0024450:71839-71858 | None:intergenic | 20.0% |
| !!! | TAGATTTTGAGTTTTGAGAA+GGG | + | tig0024450:67443-67462 | Msa1417180:five_prime_UTR | 25.0% |
| ! | GTTGATATATATAGATATGG+TGG | + | tig0024450:67472-67491 | Msa1417180:exon | 25.0% |
| ! | TAATAGCTGTTGCAATAATA+TGG | + | tig0024450:67549-67568 | Msa1417180:CDS | 25.0% |
| ! | CATATGTAAGTAACAAGAAA+CGG | - | tig0024450:67623-67642 | None:intergenic | 25.0% |
| ! | CATATGCAATTCATTATTTG+TGG | + | tig0024450:67637-67656 | Msa1417180:CDS | 25.0% |
| ! | TTGATTCCAATTGTTGAAAT+TGG | + | tig0024450:67662-67681 | Msa1417180:CDS | 25.0% |
| ! | TGATTCCAATTGTTGAAATT+GGG | + | tig0024450:67663-67682 | Msa1417180:CDS | 25.0% |
| !! | CTTATGGTGATTTATTGTTT+TGG | + | tig0024450:67702-67721 | Msa1417180:CDS | 25.0% |
| ! | AAGAGTGATAAGAGTTTAAA+AGG | + | tig0024450:67725-67744 | Msa1417180:CDS | 25.0% |
| ! | AGAGTGATAAGAGTTTAAAA+GGG | + | tig0024450:67726-67745 | Msa1417180:CDS | 25.0% |
| ! | TTGAAAATGTTGATCAAAGA+GGG | + | tig0024450:67921-67940 | Msa1417180:CDS | 25.0% |
| ! | GCTTAAATTAGCAGAAATTA+TGG | + | tig0024450:68123-68142 | Msa1417180:intron | 25.0% |
| ! | AAAATCGAAAACAATTTCGA+TGG | + | tig0024450:68169-68188 | Msa1417180:intron | 25.0% |
| ! | ATTTGAATACCTAGAAATCA+TGG | - | tig0024450:68315-68334 | None:intergenic | 25.0% |
| ! | ATATATGAACCTAATTTGGA+GGG | - | tig0024450:68365-68384 | None:intergenic | 25.0% |
| ! | TATATATGAACCTAATTTGG+AGG | - | tig0024450:68366-68385 | None:intergenic | 25.0% |
| ! | GTATGTTTGAATAGAAATTG+TGG | - | tig0024450:68434-68453 | None:intergenic | 25.0% |
| ! | AAACATACACAGAAAAATTG+TGG | + | tig0024450:68446-68465 | Msa1417180:intron | 25.0% |
| ! | GTAAATGCAAATCAAATACA+TGG | - | tig0024450:68556-68575 | None:intergenic | 25.0% |
| ! | AACAAAATTCGACAACAATT+TGG | - | tig0024450:68582-68601 | None:intergenic | 25.0% |
| !! | CATTTAATTTCTTGCGAATA+AGG | - | tig0024450:68899-68918 | None:intergenic | 25.0% |
| ! | AAGAAATTAAATGACGATGA+TGG | + | tig0024450:68906-68925 | Msa1417180:CDS | 25.0% |
| ! | AGTAAGCATATAAAAAGGTT+CGG | - | tig0024450:69033-69052 | None:intergenic | 25.0% |
| !! | AACCTTTTTATATGCTTACT+TGG | + | tig0024450:69033-69052 | Msa1417180:CDS | 25.0% |
| ! | TTCCAAGTAAGCATATAAAA+AGG | - | tig0024450:69038-69057 | None:intergenic | 25.0% |
| !! | GCTATCTTTTACATTTTCTT+TGG | + | tig0024450:69094-69113 | Msa1417180:intron | 25.0% |
| !! | AGTTCTTTATGCATTTTTCT+AGG | + | tig0024450:69135-69154 | Msa1417180:intron | 25.0% |
| !! | GTTCTTTATGCATTTTTCTA+GGG | + | tig0024450:69136-69155 | Msa1417180:intron | 25.0% |
| ! | AAGATGACTTTACATGTAAA+TGG | + | tig0024450:69226-69245 | Msa1417180:intron | 25.0% |
| !!! | TGTTCTTGTTGTTTTATGAA+TGG | + | tig0024450:69334-69353 | Msa1417180:intron | 25.0% |
| !! | TTTCTAAAAAGAACCCTTAA+AGG | - | tig0024450:69479-69498 | None:intergenic | 25.0% |
| !!! | TTTAAGGGTTCTTTTTAGAA+AGG | + | tig0024450:69478-69497 | Msa1417180:intron | 25.0% |
| ! | AGATTTCTATGAATAGGTAT+AGG | + | tig0024450:69965-69984 | Msa1417180:intron | 25.0% |
| ! | ATAAGGAATAAAAACTAAGC+AGG | - | tig0024450:70281-70300 | None:intergenic | 25.0% |
| !! | ATTTGAGACATCTTAAGTAT+TGG | + | tig0024450:70355-70374 | Msa1417180:intron | 25.0% |
| !!! | ATAAATTCTTTTTTTGGTGG+TGG | - | tig0024450:70547-70566 | None:intergenic | 25.0% |
| !!! | AAACTAGTTTTACTCTTACA+CGG | + | tig0024450:70597-70616 | Msa1417180:intron | 25.0% |
| !!! | CATACATAGTTTTGTTTTCT+AGG | - | tig0024450:70749-70768 | None:intergenic | 25.0% |
| ! | TCTTAAAAGGAAAAAAGTTG+GGG | - | tig0024450:71093-71112 | None:intergenic | 25.0% |
| ! | CATCTTAAAAGGAAAAAAGT+TGG | - | tig0024450:71095-71114 | None:intergenic | 25.0% |
| ! | AATTATTCTCAAACCAAACA+TGG | - | tig0024450:71123-71142 | None:intergenic | 25.0% |
| ! | TTGTAATCAAAAGCAAAAAC+AGG | - | tig0024450:71158-71177 | None:intergenic | 25.0% |
| !! | CGTGTGAATTTTGTAATTAA+AGG | + | tig0024450:71305-71324 | Msa1417180:intron | 25.0% |
| ! | AAATAATGTAGAATGAGGAA+AGG | - | tig0024450:71381-71400 | None:intergenic | 25.0% |
| ! | ATGTCAAATAATGTAGAATG+AGG | - | tig0024450:71386-71405 | None:intergenic | 25.0% |
| ! | TTATATTTCCTATCAAAACC+AGG | + | tig0024450:71413-71432 | Msa1417180:intron | 25.0% |
| ! | GAAAGAAAAATACAATGTAC+AGG | - | tig0024450:71758-71777 | None:intergenic | 25.0% |
| ATTGAATCCAAATTATGGGT+TGG | - | tig0024450:67189-67208 | None:intergenic | 30.0% | |
| !!! | TTAGAACGTGTTTTGATTTC+TGG | + | tig0024450:67414-67433 | Msa1417180:five_prime_UTR | 30.0% |
| !!! | TAGAACGTGTTTTGATTTCT+GGG | + | tig0024450:67415-67434 | Msa1417180:five_prime_UTR | 30.0% |
| !!! | CTAGATTTTGAGTTTTGAGA+AGG | + | tig0024450:67442-67461 | Msa1417180:five_prime_UTR | 30.0% |
| AAGATTTGGATAGTAAAGCA+TGG | + | tig0024450:67501-67520 | Msa1417180:CDS | 30.0% | |
| GATACTTCTTAGAGATAATG+AGG | + | tig0024450:67772-67791 | Msa1417180:CDS | 30.0% | |
| GTTGAAAATGTTGATCAAAG+AGG | + | tig0024450:67920-67939 | Msa1417180:CDS | 30.0% | |
| TGGAGGGTAATAACTTATAA+TGG | - | tig0024450:68349-68368 | None:intergenic | 30.0% | |
| AAGTTATTACCCTCCAAATT+AGG | + | tig0024450:68353-68372 | Msa1417180:intron | 30.0% | |
| AAAAATTGTGGTCAGAATCA+TGG | + | tig0024450:68458-68477 | Msa1417180:intron | 30.0% | |
| ! | GGTTAATTGTGTTTTGTGAA+TGG | + | tig0024450:68479-68498 | Msa1417180:intron | 30.0% |
| !!! | TTGGTTTCACTAGCTTTTTT+GGG | + | tig0024450:68705-68724 | Msa1417180:CDS | 30.0% |
| !! | TTTTGGGAGAAAAGTTTACT+TGG | + | tig0024450:68721-68740 | Msa1417180:CDS | 30.0% |
| GGAACAATAATTGTAAGTCT+TGG | + | tig0024450:68777-68796 | Msa1417180:CDS | 30.0% | |
| CTTGGTGAAATTGAGTATTA+GGG | - | tig0024450:69009-69028 | None:intergenic | 30.0% | |
| TAATACTCGTAAACCACTAT+AGG | + | tig0024450:69748-69767 | Msa1417180:intron | 30.0% | |
| AATACTCGTAAACCACTATA+GGG | + | tig0024450:69749-69768 | Msa1417180:intron | 30.0% | |
| GCAAATTTGATTATAGTTCC+TGG | + | tig0024450:69814-69833 | Msa1417180:intron | 30.0% | |
| ACCTTCAAAATGTTAAGCTT+CGG | + | tig0024450:69849-69868 | Msa1417180:intron | 30.0% | |
| TAGATTGAAACACAAGCAAA+AGG | + | tig0024450:69872-69891 | Msa1417180:intron | 30.0% | |
| ! | TTCTTCATATTTTGCTTGGA+TGG | + | tig0024450:69905-69924 | Msa1417180:intron | 30.0% |
| !! | ATGAATAGGTATAGCCTTAT+AGG | + | tig0024450:70005-70024 | Msa1417180:intron | 30.0% |
| GTGATTTATGGTAACCTATA+AGG | - | tig0024450:70022-70041 | None:intergenic | 30.0% | |
| TGCTGCTAGAATTTAAGAAA+CGG | + | tig0024450:70143-70162 | Msa1417180:intron | 30.0% | |
| TAGAATTTAAGAAACGGTTC+AGG | + | tig0024450:70149-70168 | Msa1417180:intron | 30.0% | |
| AGAATTTAAGAAACGGTTCA+GGG | + | tig0024450:70150-70169 | Msa1417180:intron | 30.0% | |
| GGAAAATCAAATCAGGAATA+AGG | - | tig0024450:70298-70317 | None:intergenic | 30.0% | |
| !! | TTCCTGATTTGATTTTCCAA+TGG | + | tig0024450:70300-70319 | Msa1417180:intron | 30.0% |
| TTCCATTGGAAAATCAAATC+AGG | - | tig0024450:70305-70324 | None:intergenic | 30.0% | |
| AAGATGTATTCAGCTAATGA+TGG | - | tig0024450:70390-70409 | None:intergenic | 30.0% | |
| ATCATTAGCTGAATACATCT+TGG | + | tig0024450:70389-70408 | Msa1417180:intron | 30.0% | |
| !! | AAATTCTAAAATAAGGTGGG+TGG | - | tig0024450:70445-70464 | None:intergenic | 30.0% |
| GACAATGCATAAAATATGCA+AGG | + | tig0024450:70503-70522 | Msa1417180:intron | 30.0% | |
| !!! | AACTAGTTTTACTCTTACAC+GGG | + | tig0024450:70598-70617 | Msa1417180:intron | 30.0% |
| AGTTATAAACTGTGCTTAGT+TGG | + | tig0024450:70661-70680 | Msa1417180:intron | 30.0% | |
| GCAAAATCATGAGTTCTTAT+TGG | + | tig0024450:70683-70702 | Msa1417180:intron | 30.0% | |
| GATGCAAAGTTGTAAATATG+CGG | - | tig0024450:71007-71026 | None:intergenic | 30.0% | |
| !! | AAGAGTTGATATGACTTTCA+TGG | + | tig0024450:71048-71067 | Msa1417180:intron | 30.0% |
| CCAAGATGAAAATAATGTGA+CGG | - | tig0024450:71183-71202 | None:intergenic | 30.0% | |
| AAAATACAATGTACAGGCTA+TGG | - | tig0024450:71752-71771 | None:intergenic | 30.0% | |
| TGGATGATTCAATTATGGGT+TGG | - | tig0024450:67169-67188 | None:intergenic | 35.0% | |
| GGGTTGGATGATTCAATTAT+GGG | - | tig0024450:67173-67192 | None:intergenic | 35.0% | |
| ! | TGGGTTGGATGATTCAATTA+TGG | - | tig0024450:67174-67193 | None:intergenic | 35.0% |
| GAATCATCCAACCCATAATT+TGG | + | tig0024450:67179-67198 | Msa1417180:five_prime_UTR | 35.0% | |
| ACCTGTCGGATAATCAAAAT+CGG | - | tig0024450:67266-67285 | None:intergenic | 35.0% | |
| GCTACAAAAGAGTCGTAAAT+TGG | - | tig0024450:67342-67361 | None:intergenic | 35.0% | |
| !!! | TGAGTTTTGAGAAGGGTTTT+TGG | + | tig0024450:67450-67469 | Msa1417180:five_prime_UTR | 35.0% |
| !! | TATGGTGGGTTCAAAAGATT+TGG | + | tig0024450:67487-67506 | Msa1417180:exon | 35.0% |
| TGGATAGTAAAGCATGGAAA+TGG | + | tig0024450:67507-67526 | Msa1417180:CDS | 35.0% | |
| GGATAGTAAAGCATGGAAAT+GGG | + | tig0024450:67508-67527 | Msa1417180:CDS | 35.0% | |
| GATAGTAAAGCATGGAAATG+GGG | + | tig0024450:67509-67528 | Msa1417180:CDS | 35.0% | |
| TTCCAATTGTTGAAATTGGG+AGG | + | tig0024450:67666-67685 | Msa1417180:CDS | 35.0% | |
| TACCTCCCAATTTCAACAAT+TGG | - | tig0024450:67671-67690 | None:intergenic | 35.0% | |
| !! | TGTTGAAATTGGGAGGTATT+TGG | + | tig0024450:67673-67692 | Msa1417180:CDS | 35.0% |
| AGGTATTTGGAGGATTCTTA+TGG | + | tig0024450:67686-67705 | Msa1417180:CDS | 35.0% | |
| GTGATAAGAGTTTAAAAGGG+AGG | + | tig0024450:67729-67748 | Msa1417180:CDS | 35.0% | |
| AAGAGTTTAAAAGGGAGGTT+AGG | + | tig0024450:67734-67753 | Msa1417180:CDS | 35.0% | |
| AGAGTTTAAAAGGGAGGTTA+GGG | + | tig0024450:67735-67754 | Msa1417180:CDS | 35.0% | |
| GGGATTATTGATAGGAATGA+TGG | + | tig0024450:67839-67858 | Msa1417180:CDS | 35.0% | |
| AAATGTTGATCAAAGAGGGT+TGG | + | tig0024450:67925-67944 | Msa1417180:CDS | 35.0% | |
| ! | GTTTATTGATATGCCCGTTT+TGG | + | tig0024450:67990-68009 | Msa1417180:CDS | 35.0% |
| AGTTGAGCGAAAAACCAAAA+CGG | - | tig0024450:68007-68026 | None:intergenic | 35.0% | |
| CTTGAAGTATACTACAGTCA+CGG | + | tig0024450:68042-68061 | Msa1417180:CDS | 35.0% | |
| GTTAACGTCATTCGAGTATA+TGG | + | tig0024450:68191-68210 | Msa1417180:intron | 35.0% | |
| GTTAGTGACGTTCAAAATTG+TGG | - | tig0024450:68293-68312 | None:intergenic | 35.0% | |
| ! | ATCCAGTCTTTTTACCTTCT+TGG | + | tig0024450:68686-68705 | Msa1417180:CDS | 35.0% |
| AACCAAGAAGGTAAAAAGAC+TGG | - | tig0024450:68691-68710 | None:intergenic | 35.0% | |
| AAAAGCTAGTGAAACCAAGA+AGG | - | tig0024450:68703-68722 | None:intergenic | 35.0% | |
| !!! | CTTGGTTTCACTAGCTTTTT+TGG | + | tig0024450:68704-68723 | Msa1417180:CDS | 35.0% |
| TTTAGTGTTCTTCTCTGCAT+GGG | + | tig0024450:68753-68772 | Msa1417180:CDS | 35.0% | |
| ! | CATTTTTGCACTTTCTTCAG+CGG | + | tig0024450:68851-68870 | Msa1417180:CDS | 35.0% |
| ! | ATTTTTGCACTTTCTTCAGC+GGG | + | tig0024450:68852-68871 | Msa1417180:CDS | 35.0% |
| !! | AATGACGATGATGGAAAGAA+TGG | + | tig0024450:68915-68934 | Msa1417180:CDS | 35.0% |
| AAAGAATGGTGAAGCTAGTA+TGG | + | tig0024450:68929-68948 | Msa1417180:CDS | 35.0% | |
| AAATTGAGTATTAGGGCAAC+TGG | - | tig0024450:69002-69021 | None:intergenic | 35.0% | |
| CCTTGGTGAAATTGAGTATT+AGG | - | tig0024450:69010-69029 | None:intergenic | 35.0% | |
| CCTAATACTCAATTTCACCA+AGG | + | tig0024450:69007-69026 | Msa1417180:CDS | 35.0% | |
| !! | TTCTTTGGAGTTTGATGAAG+TGG | + | tig0024450:69109-69128 | Msa1417180:intron | 35.0% |
| ! | ATAATCGAAGCCTTTTACCA+GGG | - | tig0024450:69308-69327 | None:intergenic | 35.0% |
| ! | AATAATCGAAGCCTTTTACC+AGG | - | tig0024450:69309-69328 | None:intergenic | 35.0% |
| ACCAAGAGTAAAGGGTAAAT+GGG | - | tig0024450:69364-69383 | None:intergenic | 35.0% | |
| TGCAAATATGAGCATTCTCT+TGG | + | tig0024450:69408-69427 | Msa1417180:intron | 35.0% | |
| !! | CTCCTTTAAGGGTTCTTTTT+AGG | + | tig0024450:69441-69460 | Msa1417180:intron | 35.0% |
| GTCCTAAAAAGAACCCTTAA+AGG | - | tig0024450:69446-69465 | None:intergenic | 35.0% | |
| !!! | GGTTCTTTTTAGGACGAATT+TGG | + | tig0024450:69451-69470 | Msa1417180:intron | 35.0% |
| TAAAGTGGAATTCGCTTTAG+AGG | - | tig0024450:69638-69657 | None:intergenic | 35.0% | |
| AAAGCGAATTCCACTTTAGA+AGG | + | tig0024450:69640-69659 | Msa1417180:intron | 35.0% | |
| ! | AGATTTGTCTCCTTCTAAAG+TGG | - | tig0024450:69653-69672 | None:intergenic | 35.0% |
| ! | ACCGAAGCTTAACATTTTGA+AGG | - | tig0024450:69853-69872 | None:intergenic | 35.0% |
| TTTGCTTGGATGGTAATAAG+AGG | + | tig0024450:69915-69934 | Msa1417180:intron | 35.0% | |
| GAATTTAAGAAACGGTTCAG+GGG | + | tig0024450:70151-70170 | Msa1417180:intron | 35.0% | |
| TTCCATCTGTTATGAGATCT+GGG | + | tig0024450:70190-70209 | Msa1417180:intron | 35.0% | |
| !! | CATCTTAAGTATTGGTCAAG+AGG | + | tig0024450:70363-70382 | Msa1417180:intron | 35.0% |
| ATTAGCTGAATACATCTTGG+CGG | + | tig0024450:70392-70411 | Msa1417180:intron | 35.0% | |
| TGCATAAAATATGCAAGGTC+TGG | + | tig0024450:70508-70527 | Msa1417180:intron | 35.0% | |
| GCATAAAATATGCAAGGTCT+GGG | + | tig0024450:70509-70528 | Msa1417180:intron | 35.0% | |
| CATAAAATATGCAAGGTCTG+GGG | + | tig0024450:70510-70529 | Msa1417180:intron | 35.0% | |
| CACAACATGGTACTAACAAT+TGG | - | tig0024450:70846-70865 | None:intergenic | 35.0% | |
| CAACAAAGATTTGCACAACA+TGG | - | tig0024450:70859-70878 | None:intergenic | 35.0% | |
| CATGTTGTGCAAATCTTTGT+TGG | + | tig0024450:70857-70876 | Msa1417180:intron | 35.0% | |
| TACAACTTTGCATCTGTACA+TGG | + | tig0024450:71013-71032 | Msa1417180:intron | 35.0% | |
| ACATGGTGAGTCATCTTAAA+AGG | - | tig0024450:71106-71125 | None:intergenic | 35.0% | |
| TTAAGATGACTCACCATGTT+TGG | + | tig0024450:71107-71126 | Msa1417180:intron | 35.0% | |
| ! | CCGTCACATTATTTTCATCT+TGG | + | tig0024450:71180-71199 | Msa1417180:intron | 35.0% |
| ! | GAAAGGATACGTGGATTAAA+GGG | - | tig0024450:71364-71383 | None:intergenic | 35.0% |
| ATGTGCTGAGTGATTACTTA+TGG | + | tig0024450:71447-71466 | Msa1417180:CDS | 35.0% | |
| TGTGCTGAGTGATTACTTAT+GGG | + | tig0024450:71448-71467 | Msa1417180:CDS | 35.0% | |
| CTTTGCTGGAATCAATATTC+CGG | + | tig0024450:71613-71632 | Msa1417180:CDS | 35.0% | |
| !! | GATTTGCTAAAAGTTTCGAC+CGG | - | tig0024450:71635-71654 | None:intergenic | 35.0% |
| CAGTGAAGAATAAGAACTAG+AGG | + | tig0024450:71876-71895 | Msa1417180:three_prime_UTR | 35.0% | |
| TGTCGGATAATCAAAATCGG+TGG | - | tig0024450:67263-67282 | None:intergenic | 40.0% | |
| !!! | ACCGATTTTGATTATCCGAC+AGG | + | tig0024450:67262-67281 | Msa1417180:five_prime_UTR | 40.0% |
| !! | ACGACTCTTTTGTAGCTTGT+AGG | + | tig0024450:67346-67365 | Msa1417180:five_prime_UTR | 40.0% |
| AAAGCATGGAAATGGGGTTT+AGG | + | tig0024450:67515-67534 | Msa1417180:CDS | 40.0% | |
| !! | TGAAATTGGGAGGTATTTGG+AGG | + | tig0024450:67676-67695 | Msa1417180:CDS | 40.0% |
| GAGTTTAAAAGGGAGGTTAG+GGG | + | tig0024450:67736-67755 | Msa1417180:CDS | 40.0% | |
| TTGGTTATTGATGAGGTGGA+TGG | + | tig0024450:67818-67837 | Msa1417180:CDS | 40.0% | |
| TGGTTATTGATGAGGTGGAT+GGG | + | tig0024450:67819-67838 | Msa1417180:CDS | 40.0% | |
| AGGTGGATGGGATTATTGAT+AGG | + | tig0024450:67831-67850 | Msa1417180:CDS | 40.0% | |
| AAAGAGGGTTGGATGAGAAA+GGG | + | tig0024450:67936-67955 | Msa1417180:CDS | 40.0% | |
| GTTGAGCGAAAAACCAAAAC+GGG | - | tig0024450:68006-68025 | None:intergenic | 40.0% | |
| CGTGACTGTAGTATACTTCA+AGG | - | tig0024450:68044-68063 | None:intergenic | 40.0% | |
| CGTCACTAACCATGATTTCT+AGG | + | tig0024450:68303-68322 | Msa1417180:intron | 40.0% | |
| CTTTAGTGTTCTTCTCTGCA+TGG | + | tig0024450:68752-68771 | Msa1417180:CDS | 40.0% | |
| ! | AGTCTTGGTGATTCACAATC+TGG | + | tig0024450:68792-68811 | Msa1417180:CDS | 40.0% |
| GCAAAAATGTCTCCAAGAAG+AGG | - | tig0024450:68840-68859 | None:intergenic | 40.0% | |
| GCGAATAAGGGTGATATACA+CGG | - | tig0024450:68886-68905 | None:intergenic | 40.0% | |
| GCTCAGTTTCTTGGATTTCT+GGG | + | tig0024450:68951-68970 | Msa1417180:CDS | 40.0% | |
| CTCAGTTTCTTGGATTTCTG+GGG | + | tig0024450:68952-68971 | Msa1417180:CDS | 40.0% | |
| CATATAAAAAGGTTCGGCCT+TGG | - | tig0024450:69027-69046 | None:intergenic | 40.0% | |
| AAGCAGCTTGGTCTGATTAT+TGG | + | tig0024450:69056-69075 | Msa1417180:CDS | 40.0% | |
| CTTGGTCTGATTATTGGCAA+AGG | + | tig0024450:69062-69081 | Msa1417180:CDS | 40.0% | |
| TCCCATTTACCCTTTACTCT+TGG | + | tig0024450:69360-69379 | Msa1417180:intron | 40.0% | |
| CACCAAGAGTAAAGGGTAAA+TGG | - | tig0024450:69365-69384 | None:intergenic | 40.0% | |
| AGCATTCTCTTGGACGAATT+TGG | + | tig0024450:69418-69437 | Msa1417180:intron | 40.0% | |
| ! | GACGAATTTGGCTCCTTTAA+GGG | + | tig0024450:69430-69449 | Msa1417180:intron | 40.0% |
| ! | GACGAATTTGGCTCCTTTAA+GGG | + | tig0024450:69430-69449 | Msa1417180:intron | 40.0% |
| GACAAATCTCGTTTAGACCT+TGG | + | tig0024450:69664-69683 | Msa1417180:intron | 40.0% | |
| AACCACTATAGGGTTGACAT+TGG | + | tig0024450:69759-69778 | Msa1417180:intron | 40.0% | |
| AACCAATGTCAACCCTATAG+TGG | - | tig0024450:69764-69783 | None:intergenic | 40.0% | |
| GAAGGTAAAAAGTTTGCACC+AGG | - | tig0024450:69835-69854 | None:intergenic | 40.0% | |
| AGCTTCATACCATTTCGCTT+TGG | + | tig0024450:70066-70085 | Msa1417180:intron | 40.0% | |
| GTTCCATCTGTTATGAGATC+TGG | + | tig0024450:70189-70208 | Msa1417180:intron | 40.0% | |
| TTCCCAGATCTCATAACAGA+TGG | - | tig0024450:70195-70214 | None:intergenic | 40.0% | |
| ATCTGTTATGAGATCTGGGA+AGG | + | tig0024450:70194-70213 | Msa1417180:intron | 40.0% | |
| TCTGTTATGAGATCTGGGAA+GGG | + | tig0024450:70195-70214 | Msa1417180:intron | 40.0% | |
| !! | ACACATGAGAAGTGTTCCAT+TGG | - | tig0024450:70319-70338 | None:intergenic | 40.0% |
| TTAGCTGAATACATCTTGGC+GGG | + | tig0024450:70393-70412 | Msa1417180:intron | 40.0% | |
| !!! | ATTCTTTTTTTGGTGGTGGC+CGG | - | tig0024450:70543-70562 | None:intergenic | 40.0% |
| ! | GGAAAGGATACGTGGATTAA+AGG | - | tig0024450:71365-71384 | None:intergenic | 40.0% |
| TAGAATGAGGAAAGGATACG+TGG | - | tig0024450:71373-71392 | None:intergenic | 40.0% | |
| TGATGTTAGAAGAACAGCCT+TGG | - | tig0024450:71474-71493 | None:intergenic | 40.0% | |
| ACTCACAATTCAAGTCCCAT+TGG | + | tig0024450:71514-71533 | Msa1417180:CDS | 40.0% | |
| ATCAACAGAAACTACTGCTG+TGG | + | tig0024450:71652-71671 | Msa1417180:CDS | 40.0% | |
| ACACAGTACGATGTACCTGT+CGG | - | tig0024450:67280-67299 | None:intergenic | 45.0% | |
| GTGCAATCTGTTGTAGATGC+CGG | + | tig0024450:67590-67609 | Msa1417180:CDS | 45.0% | |
| CTTAGAGATAATGAGGCGAG+CGG | + | tig0024450:67779-67798 | Msa1417180:CDS | 45.0% | |
| ! | GGAGTCGTTGGTTATTGATG+AGG | + | tig0024450:67811-67830 | Msa1417180:CDS | 45.0% |
| ! | GTCGTTGGTTATTGATGAGG+TGG | + | tig0024450:67814-67833 | Msa1417180:CDS | 45.0% |
| !! | TGGTTCTGAATTGCTGCCTT+CGG | + | tig0024450:67859-67878 | Msa1417180:CDS | 45.0% |
| GGATGATGTAGTTGGAGGAT+TGG | + | tig0024450:67880-67899 | Msa1417180:CDS | 45.0% | |
| ! | GATGTAGTTGGAGGATTGGT+TGG | + | tig0024450:67884-67903 | Msa1417180:CDS | 45.0% |
| !! | TAGTTGGAGGATTGGTTGGT+CGG | + | tig0024450:67888-67907 | Msa1417180:CDS | 45.0% |
| CAAAGAGGGTTGGATGAGAA+AGG | + | tig0024450:67935-67954 | Msa1417180:CDS | 45.0% | |
| ACAGTCACGGTGAGTGAATT+TGG | + | tig0024450:68055-68074 | Msa1417180:intron | 45.0% | |
| GTTGCCTCAAATCCTCTTCT+TGG | + | tig0024450:68825-68844 | Msa1417180:CDS | 45.0% | |
| GTCTCCAAGAAGAGGATTTG+AGG | - | tig0024450:68832-68851 | None:intergenic | 45.0% | |
| GCTAGTATGGCTCAGTTTCT+TGG | + | tig0024450:68942-68961 | Msa1417180:CDS | 45.0% | |
| GGCTCAGTTTCTTGGATTTC+TGG | + | tig0024450:68950-68969 | Msa1417180:CDS | 45.0% | |
| ATGCTTACTTGGAAGCAGCT+TGG | + | tig0024450:69044-69063 | Msa1417180:CDS | 45.0% | |
| ! | GGACGAATTTGGCTCCTTTA+AGG | + | tig0024450:69429-69448 | Msa1417180:intron | 45.0% |
| ! | GGACGAATTTGGCTCCTTTA+AGG | + | tig0024450:69429-69448 | Msa1417180:intron | 45.0% |
| AGAAGGCTACCAAAGCGAAA+TGG | - | tig0024450:70078-70097 | None:intergenic | 45.0% | |
| !!! | TTCTTTTTTTGGTGGTGGCC+GGG | - | tig0024450:70542-70561 | None:intergenic | 45.0% |
| TGACGTTCTTAGTGAGAAGC+TGG | + | tig0024450:70783-70802 | Msa1417180:intron | 45.0% | |
| !!! | CCAGCAATCCTGGTTTTGAT+AGG | - | tig0024450:71424-71443 | None:intergenic | 45.0% |
| CCTATCAAAACCAGGATTGC+TGG | + | tig0024450:71421-71440 | Msa1417180:intron | 45.0% | |
| GAGTGATTACTTATGGGCCA+AGG | + | tig0024450:71454-71473 | Msa1417180:CDS | 45.0% | |
| TATCGACAATGGCAGCCAAT+GGG | - | tig0024450:71532-71551 | None:intergenic | 45.0% | |
| !! | TCCAGTGATGGTATCGACAA+TGG | - | tig0024450:71543-71562 | None:intergenic | 45.0% |
| GGAGCAATAGCTGTCATGAT+CGG | + | tig0024450:71590-71609 | Msa1417180:CDS | 45.0% | |
| GCAGCTGAATCTTGTGTTCT+TGG | - | tig0024450:71725-71744 | None:intergenic | 45.0% | |
| !!! | ATTATTTTTTGTTTTTTTAT+TGG | + | tig0024450:70892-70911 | Msa1417180:intron | 5.0% |
| AACAAGAAACGGCGAGACAC+CGG | - | tig0024450:67612-67631 | None:intergenic | 50.0% | |
| CTGCCTTCGGATGATGTAGT+TGG | + | tig0024450:67872-67891 | Msa1417180:CDS | 50.0% | |
| CCTCCAACTACATCATCCGA+AGG | - | tig0024450:67878-67897 | None:intergenic | 50.0% | |
| CCTTCGGATGATGTAGTTGG+AGG | + | tig0024450:67875-67894 | Msa1417180:CDS | 50.0% | |
| !! | AGTTGGAGGATTGGTTGGTC+GGG | + | tig0024450:67889-67908 | Msa1417180:CDS | 50.0% |
| !! | ATTGGTTGGTCGGGTTGGTT+TGG | + | tig0024450:67898-67917 | Msa1417180:CDS | 50.0% |
| AGTGTTCTTCTCTGCATGGG+AGG | + | tig0024450:68756-68775 | Msa1417180:CDS | 50.0% | |
| TCCAACCCAACCCTGGTAAA+AGG | + | tig0024450:69295-69314 | Msa1417180:intron | 50.0% | |
| ! | CGAAGCCTTTTACCAGGGTT+GGG | - | tig0024450:69303-69322 | None:intergenic | 50.0% |
| ! | TCGAAGCCTTTTACCAGGGT+TGG | - | tig0024450:69304-69323 | None:intergenic | 50.0% |
| GGGCATGCACCAAGAGTAAA+GGG | - | tig0024450:69372-69391 | None:intergenic | 50.0% | |
| AGGGCATGCACCAAGAGTAA+AGG | - | tig0024450:69373-69392 | None:intergenic | 50.0% | |
| TCGCTAAAGCTGCTACTCAC+AGG | - | tig0024450:69724-69743 | None:intergenic | 50.0% | |
| CAGCAGTCAACCAAGTCACA+GGG | - | tig0024450:70128-70147 | None:intergenic | 50.0% | |
| ACAGATGGAACCTCGTGACT+AGG | - | tig0024450:70180-70199 | None:intergenic | 50.0% | |
| AAGTCCTCGTGAGCTTAGCT+CGG | + | tig0024450:70472-70491 | Msa1417180:intron | 50.0% | |
| ! | TGAGCTTAGCTCGGTTGGTA+TGG | + | tig0024450:70481-70500 | Msa1417180:intron | 50.0% |
| AGCACATTGTCCAGCAATCC+TGG | - | tig0024450:71434-71453 | None:intergenic | 50.0% | |
| TCAACCACAGTAGCTACAGC+TGG | + | tig0024450:71491-71510 | Msa1417180:CDS | 50.0% | |
| ! | GTATCGACAATGGCAGCCAA+TGG | - | tig0024450:71533-71552 | None:intergenic | 50.0% |
| GCCATTGTCGATACCATCAC+TGG | + | tig0024450:71539-71558 | Msa1417180:CDS | 50.0% | |
| TGGACATTCTCCTCCCTTCA+TGG | + | tig0024450:71559-71578 | Msa1417180:CDS | 50.0% | |
| ! | CCTCCCTTCATGGATTACCT+CGG | + | tig0024450:71569-71588 | Msa1417180:CDS | 50.0% |
| GCTCCGAGGTAATCCATGAA+GGG | - | tig0024450:71575-71594 | None:intergenic | 50.0% | |
| TGCTCCGAGGTAATCCATGA+AGG | - | tig0024450:71576-71595 | None:intergenic | 50.0% | |
| TCATGACAGCTATTGCTCCG+AGG | - | tig0024450:71589-71608 | None:intergenic | 50.0% | |
| ! | GGTTGGATGAGAAAGGGCGT+TGG | + | tig0024450:67942-67961 | Msa1417180:CDS | 55.0% |
| CTATGCATCCAACCCAACCC+TGG | + | tig0024450:69288-69307 | Msa1417180:intron | 55.0% | |
| ! | GCCTTTTACCAGGGTTGGGT+TGG | - | tig0024450:69299-69318 | None:intergenic | 55.0% |
| GTCAACCAAGTCACAGGGTG+CGG | - | tig0024450:70123-70142 | None:intergenic | 55.0% | |
| GCAGCAGTCAACCAAGTCAC+AGG | - | tig0024450:70129-70148 | None:intergenic | 55.0% | |
| GAGTCCAGCTGTAGCTACTG+TGG | - | tig0024450:71498-71517 | None:intergenic | 55.0% | |
| GGGAGGAGAATGTCCAGTGA+TGG | - | tig0024450:71555-71574 | None:intergenic | 55.0% | |
| CCGAGGTAATCCATGAAGGG+AGG | - | tig0024450:71572-71591 | None:intergenic | 55.0% | |
| ! | GCTGTCATGATCGGCTTTGC+TGG | + | tig0024450:71599-71618 | Msa1417180:CDS | 55.0% |
| GAGGTTAGGGGAGTCAGAGC+AGG | + | tig0024450:67748-67767 | Msa1417180:CDS | 60.0% | |
| CGGTGAAGCTGTGGAGTCGT+TGG | + | tig0024450:67799-67818 | Msa1417180:CDS | 60.0% | |
| !! | GGAGGATTGGTTGGTCGGGT+TGG | + | tig0024450:67893-67912 | Msa1417180:CDS | 60.0% |
| CACTTCCGCACCCTGTGACT+TGG | + | tig0024450:70115-70134 | Msa1417180:intron | 60.0% | |
| TCAGGGGTAGCCTAGTCACG+AGG | + | tig0024450:70167-70186 | Msa1417180:intron | 60.0% | |
| CCAACCGAGCTAAGCTCACG+AGG | - | tig0024450:70479-70498 | None:intergenic | 60.0% | |
| CCTCGTGAGCTTAGCTCGGT+TGG | + | tig0024450:70476-70495 | Msa1417180:intron | 60.0% | |
| ! | CAAGGTCTGGGGTTCGAACC+CGG | + | tig0024450:70521-70540 | Msa1417180:intron | 60.0% |
| TGAGGCGAGCGGTGAAGCTG+TGG | + | tig0024450:67790-67809 | Msa1417180:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024450 | gene | 67138 | 71926 | 67138 | ID=Msa1417180;Name=Msa1417180 |
| tig0024450 | mRNA | 67138 | 71926 | 67138 | ID=Msa1417180-mRNA-1;Parent=Msa1417180;Name=Msa1417180-mRNA-1;_AED=0.00;_eAED=0.00;_QI=350|1|1|1|1|1|3|172|438 |
| tig0024450 | exon | 67138 | 68063 | 67138 | ID=Msa1417180-mRNA-1:exon:23259;Parent=Msa1417180-mRNA-1 |
| tig0024450 | exon | 68663 | 69083 | 68663 | ID=Msa1417180-mRNA-1:exon:23260;Parent=Msa1417180-mRNA-1 |
| tig0024450 | exon | 71435 | 71926 | 71435 | ID=Msa1417180-mRNA-1:exon:23261;Parent=Msa1417180-mRNA-1 |
| tig0024450 | five_prime_UTR | 67138 | 67487 | 67138 | ID=Msa1417180-mRNA-1:five_prime_utr;Parent=Msa1417180-mRNA-1 |
| tig0024450 | CDS | 67488 | 68063 | 67488 | ID=Msa1417180-mRNA-1:cds;Parent=Msa1417180-mRNA-1 |
| tig0024450 | CDS | 68663 | 69083 | 68663 | ID=Msa1417180-mRNA-1:cds;Parent=Msa1417180-mRNA-1 |
| tig0024450 | CDS | 71435 | 71754 | 71435 | ID=Msa1417180-mRNA-1:cds;Parent=Msa1417180-mRNA-1 |
| tig0024450 | three_prime_UTR | 71755 | 71926 | 71755 | ID=Msa1417180-mRNA-1:three_prime_utr;Parent=Msa1417180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
